0.010270
0.005929
0.000000
0.000000
0.011859
0.000000
0.000000
0.000000
0.005816
0.00000
0.00000
0.00000
Vandeputte-Rutten, L.
Bos, M.P.
Tommassen, J.
Gros, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
97.372
97.372
171.939
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C20 H42 O6
378.544
PENTAETHYLENE GLYCOL MONODECYL ETHER
non-polymer
C2 H7 N O
61.083
ETHANOLAMINE
L-peptide COOH carboxy terminus
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
C
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
C
N
143
N
N
N
144
N
C
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
N
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
O
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
Y
207
N
C
Y
208
N
N
Y
209
N
C
Y
210
N
C
Y
211
N
N
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
S
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
N
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
S
N
350
N
O
N
351
N
O
N
352
N
O
N
353
N
O
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
N
382
N
O
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
Y
204
N
sing
Y
205
N
doub
Y
206
N
doub
N
207
N
sing
Y
208
N
sing
N
209
N
sing
Y
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
278
24825
24830
10.1074/jbc.M302803200
12716881
Crystal structure of Neisserial Surface Protein A (NspA),
a conserved outer membrane protein with vaccine potential
2003
10.2210/pdb1p4t/pdb
pdb_00001p4t
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
TOROIDAL MIRROR
CCD
2002-05-04
ADSC QUANTUM 4
DIAMOND (111)
SINGLE WAVELENGTH
M
x-ray
1
0.933
1.0
ID14-1
ESRF
0.933
SYNCHROTRON
ESRF BEAMLINE ID14-1
16582.434
outer membrane protein NspA
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
378.544
PENTAETHYLENE GLYCOL MONODECYL ETHER
5
syn
non-polymer
61.083
ETHANOLAMINE
1
syn
non-polymer
18.015
water
9
nat
water
Neisserial surface protein A, NspA
no
no
EGASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKP
YLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF
EGASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKP
YLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Neisseria
Escherichia
Escherichia coli
sample
nspa
487
Neisseria meningitidis
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET11a
1
4.73
73.99
VAPOR DIFFUSION, HANGING DROP
6.6
0.06% n-decylpentaoxyethylene (c10e5), 12% (w/v) PEG 3000, 0.1 M lithium sulfate,
0.1 M N-(2-acetamido)iminodiacetic acid (ADA), 2% (v/v) isopropanol, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
atom_site
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Advisory
Derived calculations
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
1
0
2003-07-22
1
1
2008-04-29
1
2
2011-07-13
2
0
2023-11-15
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-04-24
REL
REL
SO4
SULFATE ION
CXE
PENTAETHYLENE GLYCOL MONODECYL ETHER
ETA
ETHANOLAMINE
HOH
water
SO4
10
2
SO4
SO4
156
A
CXE
100
3
CXE
CXE
157
A
CXE
200
3
CXE
CXE
200
A
CXE
300
3
CXE
CXE
300
A
CXE
400
3
CXE
CXE
400
A
CXE
500
3
CXE
CXE
500
A
ETA
20
4
ETA
ETA
501
A
HOH
1
5
HOH
HOH
502
A
HOH
2
5
HOH
HOH
503
A
HOH
3
5
HOH
HOH
504
A
HOH
4
5
HOH
HOH
505
A
HOH
5
5
HOH
HOH
506
A
HOH
7
5
HOH
HOH
507
A
HOH
8
5
HOH
HOH
508
A
HOH
9
5
HOH
HOH
509
A
HOH
10
5
HOH
HOH
510
A
GLU
1
n
1
GLU
1
A
GLY
2
n
2
GLY
2
A
ALA
3
n
3
ALA
3
A
SER
4
n
4
SER
4
A
GLY
5
n
5
GLY
5
A
PHE
6
n
6
PHE
6
A
TYR
7
n
7
TYR
7
A
VAL
8
n
8
VAL
8
A
GLN
9
n
9
GLN
9
A
ALA
10
n
10
ALA
10
A
ASP
11
n
11
ASP
11
A
ALA
12
n
12
ALA
12
A
ALA
13
n
13
ALA
13
A
HIS
14
n
14
HIS
14
A
ALA
15
n
15
ALA
15
A
LYS
16
n
16
LYS
16
A
ALA
17
n
17
ALA
17
A
SER
18
n
18
SER
18
A
SER
19
n
19
SER
19
A
SER
20
n
20
SER
20
A
LEU
21
n
21
LEU
21
A
GLY
22
n
22
GLY
22
A
SER
23
n
23
SER
23
A
ALA
24
n
24
ALA
24
A
LYS
25
n
25
LYS
25
A
GLY
26
n
26
GLY
26
A
PHE
27
n
27
PHE
27
A
SER
28
n
28
SER
28
A
PRO
29
n
29
PRO
29
A
ARG
30
n
30
ARG
30
A
ILE
31
n
31
ILE
31
A
SER
32
n
32
SER
32
A
ALA
33
n
33
ALA
33
A
GLY
34
n
34
GLY
34
A
TYR
35
n
35
TYR
35
A
ARG
36
n
36
ARG
36
A
ILE
37
n
37
ILE
37
A
ASN
38
n
38
ASN
38
A
ASP
39
n
39
ASP
39
A
LEU
40
n
40
LEU
40
A
ARG
41
n
41
ARG
41
A
PHE
42
n
42
PHE
42
A
ALA
43
n
43
ALA
43
A
VAL
44
n
44
VAL
44
A
ASP
45
n
45
ASP
45
A
TYR
46
n
46
TYR
46
A
THR
47
n
47
THR
47
A
ARG
48
n
48
ARG
48
A
TYR
49
n
49
TYR
49
A
LYS
50
n
50
LYS
50
A
ASN
51
n
51
ASN
51
A
TYR
52
n
52
TYR
52
A
LYS
53
n
53
LYS
53
A
ALA
54
n
54
ALA
54
A
PRO
55
n
55
PRO
55
A
SER
56
n
56
SER
56
A
THR
57
n
57
THR
57
A
ASP
58
n
58
ASP
58
A
PHE
59
n
59
PHE
59
A
LYS
60
n
60
LYS
60
A
LEU
61
n
61
LEU
61
A
TYR
62
n
62
TYR
62
A
SER
63
n
63
SER
63
A
ILE
64
n
64
ILE
64
A
GLY
65
n
65
GLY
65
A
ALA
66
n
66
ALA
66
A
SER
67
n
67
SER
67
A
ALA
68
n
68
ALA
68
A
ILE
69
n
69
ILE
69
A
TYR
70
n
70
TYR
70
A
ASP
71
n
71
ASP
71
A
PHE
72
n
72
PHE
72
A
ASP
73
n
73
ASP
73
A
THR
74
n
74
THR
74
A
GLN
75
n
75
GLN
75
A
SER
76
n
76
SER
76
A
PRO
77
n
77
PRO
77
A
VAL
78
n
78
VAL
78
A
LYS
79
n
79
LYS
79
A
PRO
80
n
80
PRO
80
A
TYR
81
n
81
TYR
81
A
LEU
82
n
82
LEU
82
A
GLY
83
n
83
GLY
83
A
ALA
84
n
84
ALA
84
A
ARG
85
n
85
ARG
85
A
LEU
86
n
86
LEU
86
A
SER
87
n
87
SER
87
A
LEU
88
n
88
LEU
88
A
ASN
89
n
89
ASN
89
A
ARG
90
n
90
ARG
90
A
ALA
91
n
91
ALA
91
A
SER
92
n
92
SER
92
A
VAL
93
n
93
VAL
93
A
ASP
94
n
94
ASP
94
A
LEU
95
n
95
LEU
95
A
GLY
96
n
96
GLY
96
A
GLY
97
n
97
GLY
97
A
SER
98
n
98
SER
98
A
ASP
99
n
99
ASP
99
A
SER
100
n
100
SER
100
A
PHE
101
n
101
PHE
101
A
SER
102
n
102
SER
102
A
GLN
103
n
103
GLN
103
A
THR
104
n
104
THR
104
A
SER
105
n
105
SER
105
A
ILE
106
n
106
ILE
106
A
GLY
107
n
107
GLY
107
A
LEU
108
n
108
LEU
108
A
GLY
109
n
109
GLY
109
A
VAL
110
n
110
VAL
110
A
LEU
111
n
111
LEU
111
A
THR
112
n
112
THR
112
A
GLY
113
n
113
GLY
113
A
VAL
114
n
114
VAL
114
A
SER
115
n
115
SER
115
A
TYR
116
n
116
TYR
116
A
ALA
117
n
117
ALA
117
A
VAL
118
n
118
VAL
118
A
THR
119
n
119
THR
119
A
PRO
120
n
120
PRO
120
A
ASN
121
n
121
ASN
121
A
VAL
122
n
122
VAL
122
A
ASP
123
n
123
ASP
123
A
LEU
124
n
124
LEU
124
A
ASP
125
n
125
ASP
125
A
ALA
126
n
126
ALA
126
A
GLY
127
n
127
GLY
127
A
TYR
128
n
128
TYR
128
A
ARG
129
n
129
ARG
129
A
TYR
130
n
130
TYR
130
A
ASN
131
n
131
ASN
131
A
TYR
132
n
132
TYR
132
A
ILE
133
n
133
ILE
133
A
GLY
134
n
134
GLY
134
A
LYS
135
n
135
LYS
135
A
VAL
136
n
136
VAL
136
A
ASN
137
n
137
ASN
137
A
THR
138
n
138
THR
138
A
VAL
139
n
139
VAL
139
A
LYS
140
n
140
LYS
140
A
ASN
141
n
141
ASN
141
A
VAL
142
n
142
VAL
142
A
ARG
143
n
143
ARG
143
A
SER
144
n
144
SER
144
A
GLY
145
n
145
GLY
145
A
GLU
146
n
146
GLU
146
A
LEU
147
n
147
LEU
147
A
SER
148
n
148
SER
148
A
ALA
149
n
149
ALA
149
A
GLY
150
n
150
GLY
150
A
VAL
151
n
151
VAL
151
A
ARG
152
n
152
ARG
152
A
VAL
153
n
153
VAL
153
A
LYS
154
n
154
LYS
154
A
PHE
155
n
155
PHE
155
A
3.3852
1.0316
-0.6774
3.8066
-0.5308
5.2740
0.1487
-0.1624
-0.1803
0.1476
-0.0737
0.0617
0.2167
-0.2243
-0.0750
0.0567
-0.0422
-0.0747
0.1960
-0.0503
0.1666
refined
37.1490
16.9830
33.0080
X-RAY DIFFRACTION
A
1
A
1
A
155
A
155
X-RAY DIFFRACTION
1
A
157
C
A
500
G
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PQS
1
monomeric
software_defined_assembly
PISA
3
trimeric
10960
-60
24350
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
97.3720000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
48.6860000000
84.3266256173
0.0000000000
A
N
ALA
17
A
N
ALA
17
A
O
ALA
24
A
O
ALA
24
A
O
PHE
27
A
O
PHE
27
A
N
LYS
50
A
N
LYS
50
A
N
TYR
46
A
N
TYR
46
A
O
ILE
31
A
O
ILE
31
A
N
ARG
36
A
N
ARG
36
A
O
SER
4
A
O
SER
4
A
N
SER
18
A
N
SER
18
A
O
ARG
143
A
O
ARG
143
A
O
ARG
152
A
O
ARG
152
A
N
ASP
123
A
N
ASP
123
A
N
TYR
132
A
N
TYR
132
A
O
LEU
108
A
O
LEU
108
A
O
SER
115
A
O
SER
115
A
N
LYS
79
A
N
LYS
79
A
N
LEU
95
A
N
LEU
95
A
O
SER
98
A
O
SER
98
A
N
SER
100
A
N
SER
100
A
O
VAL
93
A
O
VAL
93
A
N
SER
92
A
N
SER
92
A
O
LYS
60
A
O
LYS
60
A
N
ILE
69
A
N
ILE
69
A
O
ARG
41
A
O
ARG
41
1
A
CG
GLU
1
A
CG
GLU
1
1
Y
1
A
CD
GLU
1
A
CD
GLU
1
1
Y
1
A
OE1
GLU
1
A
OE1
GLU
1
1
Y
1
A
OE2
GLU
1
A
OE2
GLU
1
1
Y
1
A
CG
LYS
53
A
CG
LYS
53
1
Y
1
A
CD
LYS
53
A
CD
LYS
53
1
Y
1
A
CE
LYS
53
A
CE
LYS
53
1
Y
1
A
NZ
LYS
53
A
NZ
LYS
53
1
Y
1
A
CG
LYS
79
A
CG
LYS
79
1
Y
1
A
CD
LYS
79
A
CD
LYS
79
1
Y
1
A
CE
LYS
79
A
CE
LYS
79
1
Y
1
A
NZ
LYS
79
A
NZ
LYS
79
1
Y
1
A
C1
CXE
157
C
C1
CXE
1
1
N
1
A
C2
CXE
157
C
C2
CXE
1
1
N
1
A
C24
CXE
157
C
C24
CXE
1
1
N
1
A
C25
CXE
157
C
C25
CXE
1
1
N
1
A
O26
CXE
157
C
O26
CXE
1
1
N
1
A
C1
CXE
200
D
C1
CXE
1
1
N
1
A
C2
CXE
200
D
C2
CXE
1
1
N
1
A
C3
CXE
200
D
C3
CXE
1
1
N
1
A
C4
CXE
200
D
C4
CXE
1
1
N
1
A
C5
CXE
200
D
C5
CXE
1
1
N
1
A
C1
CXE
300
E
C1
CXE
1
1
N
1
A
C2
CXE
300
E
C2
CXE
1
1
N
1
A
C12
CXE
300
E
C12
CXE
1
1
N
1
A
C13
CXE
300
E
C13
CXE
1
1
N
1
A
O14
CXE
300
E
O14
CXE
1
1
N
1
A
C15
CXE
300
E
C15
CXE
1
1
N
1
A
C16
CXE
300
E
C16
CXE
1
1
N
1
A
O17
CXE
300
E
O17
CXE
1
1
N
1
A
C18
CXE
300
E
C18
CXE
1
1
N
1
A
C19
CXE
300
E
C19
CXE
1
1
N
1
A
O20
CXE
300
E
O20
CXE
1
1
N
1
A
C21
CXE
300
E
C21
CXE
1
1
N
1
A
C22
CXE
300
E
C22
CXE
1
1
N
1
A
O23
CXE
300
E
O23
CXE
1
1
N
1
A
C24
CXE
300
E
C24
CXE
1
1
N
1
A
C25
CXE
300
E
C25
CXE
1
1
N
1
A
O26
CXE
300
E
O26
CXE
1
1
N
1
A
C1
CXE
400
F
C1
CXE
1
1
N
1
A
C2
CXE
400
F
C2
CXE
1
1
N
1
A
O14
CXE
400
F
O14
CXE
1
1
N
1
A
C15
CXE
400
F
C15
CXE
1
1
N
1
A
C16
CXE
400
F
C16
CXE
1
1
N
1
A
O17
CXE
400
F
O17
CXE
1
1
N
1
A
C18
CXE
400
F
C18
CXE
1
1
N
1
A
C19
CXE
400
F
C19
CXE
1
1
N
1
A
O20
CXE
400
F
O20
CXE
1
1
N
1
A
C21
CXE
400
F
C21
CXE
1
1
N
1
A
C22
CXE
400
F
C22
CXE
1
1
N
1
A
O23
CXE
400
F
O23
CXE
1
1
N
1
A
C24
CXE
400
F
C24
CXE
1
1
N
1
A
C25
CXE
400
F
C25
CXE
1
1
N
1
A
O26
CXE
400
F
O26
CXE
1
1
N
1
A
C1
CXE
500
G
C1
CXE
1
1
N
1
A
C2
CXE
500
G
C2
CXE
1
1
N
1
A
C24
CXE
500
G
C24
CXE
1
1
N
1
A
C25
CXE
500
G
C25
CXE
1
1
N
1
A
O26
CXE
500
G
O26
CXE
1
1
N
1
5.88
0.90
118.30
124.18
A
A
A
CB
CG
OD2
ASP
ASP
ASP
73
73
73
N
1
6.69
0.90
118.30
124.99
A
A
A
CB
CG
OD2
ASP
ASP
ASP
125
125
125
N
1
A
PHE
6
-35.77
143.29
1
A
ASN
38
46.61
-136.02
1
A
THR
74
-121.41
-163.41
1
A
GLN
75
-99.09
43.38
1
A
ASN
137
33.25
74.78
1
A
THR
138
100.66
-54.12
39.103
-0.40
-0.20
0.00
-0.40
0.00
0.59
0.927
0.922
0.25791
0.22514
0.22664
2.55
30.15
501
10340
10340
4.8
100.00
6.572
0.148
RANDOM
LIKELY RESIDUAL
1
isotropic
THROUGHOUT
0
0
SAD
0.314
0.245
0.80
0.80
1.40
Engh & Huber
BABINET MODEL WITH MASK
2.55
30.15
9
1262
92
0
1161
0.016
0.021
1326
0.002
0.020
1265
1.739
2.030
1744
0.796
3.000
2957
8.318
5.000
154
0.099
0.200
176
0.005
0.020
1371
0.003
0.020
270
0.200
0.200
171
0.244
0.200
1365
0.088
0.200
931
0.161
0.200
22
0.123
0.200
8
0.184
0.200
72
0.094
0.200
4
0.684
1.500
767
1.351
2.000
1216
2.018
3.000
559
3.330
4.500
528
0.452
0.236
2.616
39
694
20
69.8
2.55
40
1P4T
10503
10350
-3.7
-3.7
0.07
0.07
1
19
12.1
98.6
0.375
2.55
2.64
5.2
1029
0.375
1
8.7
99.7
refinement
REFMAC
5.1.19
data reduction
DENZO
data scaling
SCALEPACK
phasing
MLPHARE
Crystal structure of Neisserial surface protein A (NspA)
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
NspA is a monomer
MEMBRANE PROTEIN
beta barrel, outer membrane protein, MEMBRANE PROTEIN
Q9RP17_NEIME
UNP
1
20
Q9RP17
EGASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKP
YLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF
20
174
1P4T
1
155
Q9RP17
A
1
1
155
13
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
4
A
SER
4
A
SER
18
A
SER
18
A
SER
23
A
SER
23
A
PHE
27
A
PHE
27
A
LEU
40
A
LEU
40
A
ASN
51
A
ASN
51
A
ARG
30
A
ARG
30
A
ILE
37
A
ILE
37
A
SER
4
A
SER
4
A
SER
18
A
SER
18
A
VAL
139
A
VAL
139
A
LYS
154
A
LYS
154
A
VAL
122
A
VAL
122
A
VAL
136
A
VAL
136
A
SER
105
A
SER
105
A
THR
119
A
THR
119
A
VAL
78
A
VAL
78
A
LEU
95
A
LEU
95
A
SER
98
A
SER
98
A
PHE
101
A
PHE
101
A
VAL
78
A
VAL
78
A
LEU
95
A
LEU
95
A
LYS
60
A
LYS
60
A
ASP
71
A
ASP
71
A
LEU
40
A
LEU
40
A
ASN
51
A
ASN
51
BINDING SITE FOR RESIDUE SO4 A 156
A
SO4
156
Software
3
BINDING SITE FOR RESIDUE CXE A 157
A
CXE
157
Software
5
BINDING SITE FOR RESIDUE CXE A 200
A
CXE
200
Software
7
BINDING SITE FOR RESIDUE CXE A 300
A
CXE
300
Software
3
BINDING SITE FOR RESIDUE CXE A 400
A
CXE
400
Software
3
BINDING SITE FOR RESIDUE CXE A 500
A
CXE
500
Software
6
BINDING SITE FOR RESIDUE ETA A 501
A
ETA
501
Software
6
A
HIS
14
A
HIS
14
3
1_555
A
LYS
25
A
LYS
25
3
1_555
A
ARG
48
A
ARG
48
3
3_665
A
ASP
11
A
ASP
11
5
1_555
A
ARG
30
A
ARG
30
5
1_555
A
ALA
149
A
ALA
149
5
1_555
A
VAL
151
A
VAL
151
5
1_555
A
CXE
200
D
CXE
5
2_655
A
ALA
12
A
ALA
12
7
1_555
A
ALA
13
A
ALA
13
7
1_555
A
ILE
31
A
ILE
31
7
3_665
A
TYR
52
A
TYR
52
7
1_555
A
LEU
147
A
LEU
147
7
1_555
A
SER
148
A
SER
148
7
1_555
A
CXE
157
C
CXE
7
3_665
A
TYR
70
A
TYR
70
3
12_555
A
LEU
82
A
LEU
82
3
12_555
A
LEU
108
A
LEU
108
3
1_555
A
TYR
35
A
TYR
35
3
1_555
A
ALA
66
A
ALA
66
3
1_555
A
ILE
106
A
ILE
106
3
12_555
A
SER
19
A
SER
19
6
1_555
A
GLY
22
A
GLY
22
6
1_555
A
SER
23
A
SER
23
6
1_555
A
SER
100
A
SER
100
6
1_555
A
SER
102
A
SER
102
6
1_555
A
ASN
137
A
ASN
137
6
1_555
A
ARG
30
A
ARG
30
6
1_555
A
ARG
41
A
ARG
41
6
1_555
A
ILE
69
A
ILE
69
6
1_555
A
TYR
81
A
TYR
81
6
1_555
A
ASP
125
A
ASP
125
6
1_555
A
ARG
152
A
ARG
152
6
1_555
155
H 3 2