0.015078 0.000000 0.000000 0.000000 0.009443 0.000000 0.000000 0.000000 0.024086 0.00000 0.00000 0.00000 Fromme, J.C. Verdine, G.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 66.321 105.896 41.518 C5 H11 O6 P 198.111 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE ABASIC DIDEOXYRIBOSE DNA linking C9 H12 I N2 O8 P 434.078 n 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking Fe4 S4 351.640 IRON/SULFUR CLUSTER non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 N C N 8 R C N 9 N O N 10 N C N 11 S C N 12 N O N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N N N 25 N C N 26 N N N 27 N C N 28 N C N 29 N C N 30 N O N 31 N O N 32 N I N 33 R C N 34 N C N 35 S C N 36 R C N 37 N O N 38 N O N 39 N C N 40 N O N 41 N P N 42 N O N 43 N O N 44 N O N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N N N 71 S C N 72 N C N 73 N O N 74 N C N 75 N C N 76 N C N 77 N N N 78 N C N 79 N N N 80 N N N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N N N 98 S C N 99 N C N 100 N O N 101 N C N 102 N C N 103 N O N 104 N N N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 S C N 116 N C N 117 N O N 118 N C N 119 N C N 120 N O N 121 N O N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 R C N 132 N C N 133 N O N 134 N C N 135 N S N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C Y 156 N N Y 157 N C Y 158 N N Y 159 N C Y 160 N C N 161 N N Y 162 N N Y 163 N C Y 164 N N Y 165 N C N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N O N 181 N P N 182 N O N 183 N O N 184 N O N 185 N C N 186 R C N 187 N O N 188 S C N 189 N O N 190 N C N 191 R C N 192 N N N 193 N C N 194 N O N 195 N N N 196 N C N 197 N N N 198 N C N 199 N C N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N O N 215 N P N 216 N O N 217 N O N 218 N O N 219 N C N 220 R C N 221 N O N 222 S C N 223 N O N 224 N C N 225 R C Y 226 N N Y 227 N C Y 228 N N Y 229 N C N 230 N C N 231 N O N 232 N N N 233 N C N 234 N N N 235 N N Y 236 N C N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N O N 252 N P N 253 N O N 254 N O N 255 N O N 256 N C N 257 R C N 258 N O N 259 S C N 260 N O N 261 N C N 262 R C N 263 N N N 264 N C N 265 N O N 266 N N N 267 N C N 268 N O N 269 N C N 270 N C N 271 N C N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N O N 295 N N N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N C N 313 N C N 314 N O N 315 N O N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 N C N 328 N C N 329 N O N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C Y 341 N C Y 342 N N Y 343 N C Y 344 N C Y 345 N N N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N O N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 S C N 365 N C N 366 N C N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C N 387 N C N 388 N C N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N N N 405 S C N 406 N C N 407 N O N 408 N C N 409 N C N 410 N C N 411 N C N 412 N N N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N N N 430 S C N 431 N C N 432 N O N 433 N C N 434 N C N 435 N S N 436 N C N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N NA N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C Y 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N C Y 460 N C N 461 N O N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N N N 474 S C N 475 N C N 476 N O N 477 N C N 478 N C N 479 N C N 480 N O N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N N N 491 S C N 492 N C N 493 N O N 494 N C N 495 N O N 496 N O N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N FE N 505 N FE N 506 N FE N 507 N FE N 508 N S N 509 N S N 510 N S N 511 N S N 512 N N N 513 S C N 514 N C N 515 N O N 516 R C N 517 N O N 518 N C N 519 N O N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N N N 530 S C N 531 N C N 532 N O N 533 N C Y 534 N C Y 535 N C Y 536 N C Y 537 N N Y 538 N C Y 539 N C Y 540 N C Y 541 N C Y 542 N C N 543 N O N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N N N 557 S C N 558 N C N 559 N O N 560 N C Y 561 N C Y 562 N C Y 563 N C Y 564 N C Y 565 N C Y 566 N C N 567 N O N 568 N O N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N N N 581 S C N 582 N C N 583 N O N 584 N C N 585 N C N 586 N C N 587 N O N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N H N 595 N H N 596 N H N 597 N H N 598 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N doub N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing Y 163 N sing Y 164 N sing Y 165 N doub N 166 N sing Y 167 N sing Y 168 N sing Y 169 N doub N 170 N sing Y 171 N doub N 172 N sing N 173 N sing Y 174 N sing Y 175 N doub N 176 N sing Y 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing Y 236 N sing Y 237 N sing Y 238 N doub N 239 N sing Y 240 N sing N 241 N sing Y 242 N doub N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing Y 346 N sing Y 347 N doub Y 348 N doub N 349 N sing Y 350 N sing N 351 N sing Y 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N doub N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N doub N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N doub N 450 N sing N 451 N sing N 452 N sing N 453 N sing Y 454 N doub Y 455 N sing Y 456 N sing N 457 N sing Y 458 N doub N 459 N sing Y 460 N doub N 461 N sing Y 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N doub N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N doub N 531 N sing N 532 N sing N 533 N sing N 534 N sing Y 535 N doub Y 536 N sing Y 537 N sing N 538 N sing Y 539 N doub Y 540 N sing Y 541 N sing N 542 N sing Y 543 N sing Y 544 N doub N 545 N sing Y 546 N doub N 547 N sing Y 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N doub N 559 N sing N 560 N sing N 561 N sing N 562 N sing Y 563 N doub Y 564 N sing Y 565 N sing N 566 N sing Y 567 N doub N 568 N sing Y 569 N doub N 570 N sing Y 571 N sing N 572 N sing N 573 N sing N 574 N sing N 575 N sing N 576 N sing N 577 N sing N 578 N sing N 579 N sing N 580 N sing N 581 N sing N 582 N doub N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N sing N 593 N sing UK Embo J. EMJODG 0897 0261-4189 22 3461 3471 10.1093/emboj/cdg311 12840008 Structure of a Trapped Endonuclease III-DNA Covalent Intermediate 2003 10.2210/pdb1p59/pdb pdb_00001p59 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2002-11-20 RIGAKU RAXIS IV NULL SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 3519.119 5'-D(*AP*AP*GP*AP*CP*GP*(5IU)P*GP*GP*AP*C)-3' 1 syn polymer 3414.813 5'-D(TP*GP*(5IU)P*CP*CP*AP*(3DR)P*GP*(5IU)P*CP*T)-3' 1 syn polymer 26236.789 Endonuclease III 1 man polymer 22.990 SODIUM ION 1 syn non-polymer 351.640 IRON/SULFUR CLUSTER 1 syn non-polymer 18.015 water 31 nat water no yes (DA)(DA)(DG)(DA)(DC)(DG)(5IU)(DG)(DG)(DA)(DC) AAGACGUGGAC B polydeoxyribonucleotide no yes (DT)(DG)(5IU)(DC)(DC)(DA)(3DR)(DG)(5IU)(DC)(DT) TGUCCANGUCT C polydeoxyribonucleotide no no GSHMLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDI RSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVERVSKRLGFCRWDDS VLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRKREEKAANQK GSHMLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDI RSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVERVSKRLGFCRWDDS VLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRKREEKAANQK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Geobacillus Escherichia sample NTH 1422 Geobacillus stearothermophilus 562 Escherichia coli BL21(C41) PLASMID PET28 1 2.18 43.58 VAPOR DIFFUSION, HANGING DROP 8.5 PEG 8000, TRIS, BME, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 PEG 8000 1 TRIS 1 BME 1 PEG 8000 2 TRIS 2 BME 2 -16.885 1 20 B 2 C 22 -2.207 B_DA2:DT22_C 1 -5.580 -0.118 -0.255 0.150 -4.412 1 19 B 3 C 21 0.138 B_DG3:DC21_C 2 -13.863 -0.496 0.047 -0.240 2.075 1 20 B 4 C 20 2.313 B_DA4:5IU20_C 3 -4.860 0.188 -0.016 0.287 10.089 1 19 B 5 C 19 -0.094 B_DC5:DG19_C 4 -4.081 0.053 0.033 -0.134 -6.588 1 20 B 7 C 17 5.133 B_5IU7:DA17_C 5 -10.805 0.284 0.415 0.101 -1.054 1 19 B 8 C 16 -2.305 B_DG8:DC16_C 6 -6.222 0.303 -0.059 -0.183 -10.672 1 19 B 9 C 15 4.594 B_DG9:DC15_C 7 -8.758 0.183 -0.254 0.047 -6.308 1 20 B 10 C 14 0.091 B_DA10:5IU14_C 8 -5.731 -0.411 -0.246 0.184 4.474 1 19 B 11 C 13 3.259 B_DC11:DG13_C 9 10.328 0.582 -0.138 -0.259 3.006 32.978 B B 2 3 3.131 C C 22 21 3.003 1.776 -0.077 0.126 BB_DA2DG3:DC21DT22_CC 1 -1.499 2.642 32.898 -0.055 -0.098 3.118 38.802 B B 3 4 1.567 C C 21 20 3.113 1.041 -0.161 0.127 BB_DG3DA4:5IU20DC21_CC 2 -0.717 1.080 38.782 0.070 0.160 3.058 25.975 B B 4 5 1.459 C C 20 19 3.083 0.656 0.329 -0.337 BB_DA4DC5:DG195IU20_CC 3 -1.053 2.343 25.946 -0.919 -1.004 3.159 37.557 B B 7 8 2.724 C C 17 16 3.134 1.753 -0.783 0.311 BB_5IU7DG8:DC16DA17_CC 4 -0.754 1.171 37.511 0.263 1.122 3.302 33.770 B B 8 9 15.270 C C 16 15 3.559 8.774 0.346 -0.545 BB_DG8DG9:DC15DC16_CC 5 -0.326 0.567 32.640 -2.456 -0.651 3.207 35.862 B B 9 10 -1.951 C C 15 14 3.206 -1.200 -0.233 0.190 BB_DG9DA10:5IU14DC15_CC 6 -2.234 3.631 35.775 0.477 0.064 3.096 34.168 B B 10 11 3.937 C C 14 13 3.186 2.310 0.690 -0.596 BB_DA10DC11:DG135IU14_CC 7 -1.989 3.389 34.036 -1.366 -1.477 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2003-07-15 1 1 2008-04-29 1 2 2011-07-13 1 3 2017-10-11 1 4 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id EndoIII-DNA covalent complex with estranged guanine EndoIII-DNA covalent complex with estranged adenine Endonuclease III structure SEQUENCE AUTHORS INFORMED THAT THE PROTEIN SEQUENCE HAS NOT YET BEEN PUBLISHED. RESIDUES GLY -2, SER -1 AND HIS 0 ARE CLONING ARTIFACTS. RCSB Y RCSB 2003-04-25 REL REL NA SODIUM ION SF4 IRON/SULFUR CLUSTER HOH water 1ORN PDB ENTRY 1ORN PDB experimental model NA1 1 4 NA NA 224 A FS4 300 5 SF4 SF4 300 A HOH 9 6 HOH HOH 12 B HOH 20 6 HOH HOH 13 B HOH 21 6 HOH HOH 14 B HOH 2 6 HOH HOH 23 C HOH 18 6 HOH HOH 24 C HOH 19 6 HOH HOH 25 C HOH 22 6 HOH HOH 26 C HOH 29 6 HOH HOH 27 C HOH 1 6 HOH HOH 301 A HOH 3 6 HOH HOH 302 A HOH 4 6 HOH HOH 303 A HOH 5 6 HOH HOH 304 A HOH 6 6 HOH HOH 305 A HOH 7 6 HOH HOH 306 A HOH 8 6 HOH HOH 307 A HOH 10 6 HOH HOH 308 A HOH 11 6 HOH HOH 309 A HOH 12 6 HOH HOH 310 A HOH 13 6 HOH HOH 311 A HOH 14 6 HOH HOH 312 A HOH 15 6 HOH HOH 313 A HOH 16 6 HOH HOH 314 A HOH 17 6 HOH HOH 315 A HOH 23 6 HOH HOH 316 A HOH 24 6 HOH HOH 317 A HOH 25 6 HOH HOH 318 A HOH 26 6 HOH HOH 319 A HOH 27 6 HOH HOH 320 A HOH 28 6 HOH HOH 321 A HOH 30 6 HOH HOH 322 A HOH 31 6 HOH HOH 323 A ADE 1 n 1 DA 1 B ADE 2 n 2 DA 2 B GUA 3 n 3 DG 3 B ADE 4 n 4 DA 4 B CYT 5 n 5 DC 5 B GUA 6 n 6 DG 6 B 5IU 7 n 7 5IU 7 B GUA 8 n 8 DG 8 B GUA 9 n 9 DG 9 B ADE 10 n 10 DA 10 B CYT 11 n 11 DC 11 B n 1 12 C GUA 13 n 2 DG 13 C 5IU 14 n 3 5IU 14 C CYT 15 n 4 DC 15 C CYT 16 n 5 DC 16 C ADE 17 n 6 DA 17 C 3DR 18 n 7 3DR 18 C GUA 19 n 8 DG 19 C 5IU 20 n 9 5IU 20 C CYT 21 n 10 DC 21 C THY 22 n 11 DT 22 C n 1 -2 A n 2 -1 A n 3 0 A ALA 1 n 4 MET 1 A LEU 2 n 5 LEU 2 A THR 3 n 6 THR 3 A ALA 4 n 7 LYS 4 A GLN 5 n 8 GLN 5 A GLN 6 n 9 GLN 6 A ILE 7 n 10 ILE 7 A ARG 8 n 11 ARG 8 A TYR 9 n 12 TYR 9 A CYS 10 n 13 CYS 10 A LEU 11 n 14 LEU 11 A ALA 12 n 15 ASP 12 A GLU 13 n 16 GLU 13 A MET 14 n 17 MET 14 A ALA 15 n 18 ALA 15 A LYS 16 n 19 LYS 16 A MET 17 n 20 MET 17 A PHE 18 n 21 PHE 18 A PRO 19 n 22 PRO 19 A GLY 20 n 23 ASP 20 A ALA 21 n 24 ALA 21 A HIS 22 n 25 HIS 22 A CYS 23 n 26 CYS 23 A GLU 24 n 27 GLU 24 A LEU 25 n 28 LEU 25 A VAL 26 n 29 VAL 26 A HIS 27 n 30 HIS 27 A ARG 28 n 31 ARG 28 A ASN 29 n 32 ASN 29 A PRO 30 n 33 PRO 30 A PHE 31 n 34 PHE 31 A GLU 32 n 35 GLU 32 A LEU 33 n 36 LEU 33 A LEU 34 n 37 LEU 34 A ILE 35 n 38 ILE 35 A ALA 36 n 39 ALA 36 A VAL 37 n 40 VAL 37 A VAL 38 n 41 VAL 38 A LEU 39 n 42 LEU 39 A SER 40 n 43 SER 40 A ALA 41 n 44 ALA 41 A GLN 42 n 45 GLN 42 A CYS 43 n 46 CYS 43 A THR 44 n 47 THR 44 A ASP 45 n 48 ASP 45 A ALA 46 n 49 ALA 46 A LEU 47 n 50 LEU 47 A VAL 48 n 51 VAL 48 A ASN 49 n 52 ASN 49 A LYS 50 n 53 LYS 50 A VAL 51 n 54 VAL 51 A THR 52 n 55 THR 52 A LYS 53 n 56 LYS 53 A ARG 54 n 57 ARG 54 A LEU 55 n 58 LEU 55 A PHE 56 n 59 PHE 56 A GLU 57 n 60 GLU 57 A LYS 58 n 61 LYS 58 A TYR 59 n 62 TYR 59 A ARG 60 n 63 ARG 60 A THR 61 n 64 THR 61 A PRO 62 n 65 PRO 62 A HIS 63 n 66 HIS 63 A ASP 64 n 67 ASP 64 A TYR 65 n 68 TYR 65 A ILE 66 n 69 ILE 66 A ALA 67 n 70 ALA 67 A VAL 68 n 71 VAL 68 A PRO 69 n 72 PRO 69 A LEU 70 n 73 LEU 70 A GLU 71 n 74 GLU 71 A GLU 72 n 75 GLU 72 A LEU 73 n 76 LEU 73 A GLU 74 n 77 GLU 74 A GLN 75 n 78 GLN 75 A ASP 76 n 79 ASP 76 A ILE 77 n 80 ILE 77 A ARG 78 n 81 ARG 78 A SER 79 n 82 SER 79 A ILE 80 n 83 ILE 80 A GLY 81 n 84 GLY 81 A LEU 82 n 85 LEU 82 A TYR 83 n 86 TYR 83 A ARG 84 n 87 ARG 84 A ASN 85 n 88 ASN 85 A LYS 86 n 89 LYS 86 A ALA 87 n 90 ALA 87 A ALA 88 n 91 ARG 88 A ASN 89 n 92 ASN 89 A ILE 90 n 93 ILE 90 A GLN 91 n 94 GLN 91 A LYS 92 n 95 LYS 92 A LEU 93 n 96 LEU 93 A CYS 94 n 97 CYS 94 A ALA 95 n 98 ALA 95 A MET 96 n 99 MET 96 A LEU 97 n 100 LEU 97 A ILE 98 n 101 ILE 98 A ASP 99 n 102 ASP 99 A LYS 100 n 103 LYS 100 A TYR 101 n 104 TYR 101 A ASN 102 n 105 ASN 102 A GLY 103 n 106 GLY 103 A GLU 104 n 107 GLU 104 A VAL 105 n 108 VAL 105 A PRO 106 n 109 PRO 106 A ARG 107 n 110 ARG 107 A ASP 108 n 111 ASP 108 A ARG 109 n 112 ARG 109 A ASP 110 n 113 ASP 110 A GLU 111 n 114 GLU 111 A LEU 112 n 115 LEU 112 A MET 113 n 116 MET 113 A LYS 114 n 117 LYS 114 A LEU 115 n 118 LEU 115 A PRO 116 n 119 PRO 116 A GLY 117 n 120 GLY 117 A VAL 118 n 121 VAL 118 A GLY 119 n 122 GLY 119 A ARG 120 n 123 ARG 120 A LYS 121 n 124 LYS 121 A THR 122 n 125 THR 122 A ALA 123 n 126 ALA 123 A ASN 124 n 127 ASN 124 A VAL 125 n 128 VAL 125 A VAL 126 n 129 VAL 126 A VAL 127 n 130 VAL 127 A SER 128 n 131 SER 128 A THR 129 n 132 THR 129 A ALA 130 n 133 ALA 130 A PHE 131 n 134 PHE 131 A GLY 132 n 135 GLY 132 A VAL 133 n 136 VAL 133 A PRO 134 n 137 PRO 134 A ALA 135 n 138 ALA 135 A ILE 136 n 139 ILE 136 A ALA 137 n 140 ALA 137 A VAL 138 n 141 VAL 138 A ASP 139 n 142 ASP 139 A THR 140 n 143 THR 140 A HIS 141 n 144 HIS 141 A VAL 142 n 145 VAL 142 A GLU 143 n 146 GLU 143 A ARG 144 n 147 ARG 144 A VAL 145 n 148 VAL 145 A SER 146 n 149 SER 146 A LYS 147 n 150 LYS 147 A ARG 148 n 151 ARG 148 A LEU 149 n 152 LEU 149 A GLY 150 n 153 GLY 150 A PHE 151 n 154 PHE 151 A CYS 152 n 155 CYS 152 A ARG 153 n 156 ARG 153 A TRP 154 n 157 TRP 154 A ASP 155 n 158 ASP 155 A ASP 156 n 159 ASP 156 A SER 157 n 160 SER 157 A VAL 158 n 161 VAL 158 A LEU 159 n 162 LEU 159 A ALA 160 n 163 GLU 160 A VAL 161 n 164 VAL 161 A GLU 162 n 165 GLU 162 A LYS 163 n 166 LYS 163 A THR 164 n 167 THR 164 A LEU 165 n 168 LEU 165 A MET 166 n 169 MET 166 A LYS 167 n 170 LYS 167 A ILE 168 n 171 ILE 168 A ILE 169 n 172 ILE 169 A PRO 170 n 173 PRO 170 A LYS 171 n 174 LYS 171 A GLU 172 n 175 GLU 172 A GLU 173 n 176 GLU 173 A TRP 174 n 177 TRP 174 A SER 175 n 178 SER 175 A ILE 176 n 179 ILE 176 A THR 177 n 180 THR 177 A HIS 178 n 181 HIS 178 A HIS 179 n 182 HIS 179 A ARG 180 n 183 ARG 180 A MET 181 n 184 MET 181 A ILE 182 n 185 ILE 182 A PHE 183 n 186 PHE 183 A PHE 184 n 187 PHE 184 A GLY 185 n 188 GLY 185 A ARG 186 n 189 ARG 186 A TYR 187 n 190 TYR 187 A HIS 188 n 191 HIS 188 A CYS 189 n 192 CYS 189 A LYS 190 n 193 LYS 190 A ALA 191 n 194 ALA 191 A GLY 192 n 195 GLN 192 A GLY 193 n 196 SER 193 A PRO 194 n 197 PRO 194 A ALA 195 n 198 GLN 195 A CYS 196 n 199 CYS 196 A PRO 197 n 200 PRO 197 A SER 198 n 201 SER 198 A CYS 199 n 202 CYS 199 A PRO 200 n 203 PRO 200 A LEU 201 n 204 LEU 201 A LEU 202 n 205 LEU 202 A HIS 203 n 206 HIS 203 A LEU 204 n 207 LEU 204 A CYS 205 n 208 CYS 205 A ALA 206 n 209 ARG 206 A GLU 207 n 210 GLU 207 A GLY 208 n 211 GLY 208 A LYS 209 n 212 LYS 209 A LYS 210 n 213 LYS 210 A ARG 211 n 214 ARG 211 A MET 212 n 215 MET 212 A ALA 213 n 216 ARG 213 A GLY 214 n 217 LYS 214 A n 218 215 A n 219 216 A n 220 217 A n 221 218 A n 222 219 A n 223 220 A n 224 221 A n 225 222 A n 226 223 A author_defined_assembly 3 trimeric C DC 21 B OP1 DC 10 1_555 A NA 224 D NA NA 1_555 A MET 113 C O MET 116 1_555 162.5 C DC 21 B OP1 DC 10 1_555 A NA 224 D NA NA 1_555 A LEU 115 C O LEU 118 1_555 94.6 A MET 113 C O MET 116 1_555 A NA 224 D NA NA 1_555 A LEU 115 C O LEU 118 1_555 102.5 C DC 21 B OP1 DC 10 1_555 A NA 224 D NA NA 1_555 A VAL 118 C O VAL 121 1_555 91.7 A MET 113 C O MET 116 1_555 A NA 224 D NA NA 1_555 A VAL 118 C O VAL 121 1_555 87.4 A LEU 115 C O LEU 118 1_555 A NA 224 D NA NA 1_555 A VAL 118 C O VAL 121 1_555 82.4 A CYS 189 C SG CYS 192 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S1 SF4 1_555 110.7 A CYS 189 C SG CYS 192 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S3 SF4 1_555 109.0 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S3 SF4 1_555 113.6 A CYS 189 C SG CYS 192 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S4 SF4 1_555 119.4 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S4 SF4 1_555 101.1 A SF4 300 E S3 SF4 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S4 SF4 1_555 103.0 A CYS 196 C SG CYS 199 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S1 SF4 1_555 102.0 A CYS 196 C SG CYS 199 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S2 SF4 1_555 125.1 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S2 SF4 1_555 101.7 A CYS 196 C SG CYS 199 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S4 SF4 1_555 112.0 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S4 SF4 1_555 107.1 A SF4 300 E S2 SF4 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S4 SF4 1_555 107.0 A CYS 199 C SG CYS 202 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S2 SF4 1_555 121.1 A CYS 199 C SG CYS 202 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S3 SF4 1_555 112.5 A SF4 300 E S2 SF4 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S3 SF4 1_555 100.4 A CYS 199 C SG CYS 202 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S4 SF4 1_555 118.8 A SF4 300 E S2 SF4 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S4 SF4 1_555 101.1 A SF4 300 E S3 SF4 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S4 SF4 1_555 99.5 A CYS 205 C SG CYS 208 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S1 SF4 1_555 118.1 A CYS 205 C SG CYS 208 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S2 SF4 1_555 106.6 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S2 SF4 1_555 100.2 A CYS 205 C SG CYS 208 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S3 SF4 1_555 118.9 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S3 SF4 1_555 105.4 A SF4 300 E S2 SF4 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S3 SF4 1_555 105.4 B 5IU 7 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE A 5IU 7 DU C 5IU 14 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE B 5IU 3 DU C 5IU 20 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE B 5IU 9 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 C P DG 13 B P DG 2 1 Y 1 C OP1 DG 13 B OP1 DG 2 1 Y 1 C OP2 DG 13 B OP2 DG 2 1 Y 1 A CG MET 1 C CG MET 4 1 Y 1 A SD MET 1 C SD MET 4 1 Y 1 A CE MET 1 C CE MET 4 1 Y 1 A CG LYS 4 C CG LYS 7 1 Y 1 A CD LYS 4 C CD LYS 7 1 Y 1 A CE LYS 4 C CE LYS 7 1 Y 1 A NZ LYS 4 C NZ LYS 7 1 Y 1 A NE ARG 8 C NE ARG 11 1 Y 1 A CZ ARG 8 C CZ ARG 11 1 Y 1 A NH1 ARG 8 C NH1 ARG 11 1 Y 1 A NH2 ARG 8 C NH2 ARG 11 1 Y 1 A CG ASP 12 C CG ASP 15 1 Y 1 A OD1 ASP 12 C OD1 ASP 15 1 Y 1 A OD2 ASP 12 C OD2 ASP 15 1 Y 1 A CE LYS 16 C CE LYS 19 1 Y 1 A NZ LYS 16 C NZ LYS 19 1 Y 1 A CB ASP 20 C CB ASP 23 1 Y 1 A CG ASP 20 C CG ASP 23 1 Y 1 A OD1 ASP 20 C OD1 ASP 23 1 Y 1 A OD2 ASP 20 C OD2 ASP 23 1 Y 1 A CD LYS 50 C CD LYS 53 1 Y 1 A CE LYS 50 C CE LYS 53 1 Y 1 A NZ LYS 50 C NZ LYS 53 1 Y 1 A CD LYS 53 C CD LYS 56 1 Y 1 A CE LYS 53 C CE LYS 56 1 Y 1 A NZ LYS 53 C NZ LYS 56 1 Y 1 A CG ARG 88 C CG ARG 91 1 Y 1 A CD ARG 88 C CD ARG 91 1 Y 1 A NE ARG 88 C NE ARG 91 1 Y 1 A CZ ARG 88 C CZ ARG 91 1 Y 1 A NH1 ARG 88 C NH1 ARG 91 1 Y 1 A NH2 ARG 88 C NH2 ARG 91 1 Y 1 A CD LYS 92 C CD LYS 95 1 Y 1 A CE LYS 92 C CE LYS 95 1 Y 1 A NZ LYS 92 C NZ LYS 95 1 Y 1 A CD LYS 100 C CD LYS 103 1 Y 1 A CE LYS 100 C CE LYS 103 1 Y 1 A NZ LYS 100 C NZ LYS 103 1 Y 1 A NE ARG 153 C NE ARG 156 1 Y 1 A CZ ARG 153 C CZ ARG 156 1 Y 1 A NH1 ARG 153 C NH1 ARG 156 1 Y 1 A NH2 ARG 153 C NH2 ARG 156 1 Y 1 A OD1 ASP 155 C OD1 ASP 158 1 Y 1 A OD2 ASP 155 C OD2 ASP 158 1 Y 1 A CG GLU 160 C CG GLU 163 1 Y 1 A CD GLU 160 C CD GLU 163 1 Y 1 A OE1 GLU 160 C OE1 GLU 163 1 Y 1 A OE2 GLU 160 C OE2 GLU 163 1 Y 1 A CE LYS 190 C CE LYS 193 1 Y 1 A NZ LYS 190 C NZ LYS 193 1 Y 1 A CB GLN 192 C CB GLN 195 1 Y 1 A CG GLN 192 C CG GLN 195 1 Y 1 A CD GLN 192 C CD GLN 195 1 Y 1 A OE1 GLN 192 C OE1 GLN 195 1 Y 1 A NE2 GLN 192 C NE2 GLN 195 1 Y 1 A CB SER 193 C CB SER 196 1 Y 1 A OG SER 193 C OG SER 196 1 Y 1 A CG GLN 195 C CG GLN 198 1 Y 1 A CD GLN 195 C CD GLN 198 1 Y 1 A OE1 GLN 195 C OE1 GLN 198 1 Y 1 A NE2 GLN 195 C NE2 GLN 198 1 Y 1 A CG ARG 206 C CG ARG 209 1 Y 1 A CD ARG 206 C CD ARG 209 1 Y 1 A NE ARG 206 C NE ARG 209 1 Y 1 A CZ ARG 206 C CZ ARG 209 1 Y 1 A NH1 ARG 206 C NH1 ARG 209 1 Y 1 A NH2 ARG 206 C NH2 ARG 209 1 Y 1 A CE LYS 210 C CE LYS 213 1 Y 1 A NZ LYS 210 C NZ LYS 213 1 Y 1 A CG ARG 213 C CG ARG 216 1 Y 1 A CD ARG 213 C CD ARG 216 1 Y 1 A NE ARG 213 C NE ARG 216 1 Y 1 A CZ ARG 213 C CZ ARG 216 1 Y 1 A NH1 ARG 213 C NH1 ARG 216 1 Y 1 A NH2 ARG 213 C NH2 ARG 216 1 Y 1 A CB LYS 214 C CB LYS 217 1 Y 1 A CG LYS 214 C CG LYS 217 1 Y 1 A CD LYS 214 C CD LYS 217 1 Y 1 A CE LYS 214 C CE LYS 217 1 Y 1 A NZ LYS 214 C NZ LYS 217 1 Y 1 C DT 12 B DT 1 1 Y 1 A GLY -2 C GLY 1 1 Y 1 A SER -1 C SER 2 1 Y 1 A HIS 0 C HIS 3 1 Y 1 A ARG 215 C ARG 218 1 Y 1 A GLU 216 C GLU 219 1 Y 1 A GLU 217 C GLU 220 1 Y 1 A LYS 218 C LYS 221 1 Y 1 A ALA 219 C ALA 222 1 Y 1 A ALA 220 C ALA 223 1 Y 1 A ASN 221 C ASN 224 1 Y 1 A GLN 222 C GLN 225 1 Y 1 A LYS 223 C LYS 226 1 Y 1 A ASP 20 -100.33 45.30 1 A ALA 41 -36.68 120.19 1 A ALA 135 -172.73 148.68 1 A ILE 168 -89.83 -77.03 1 A HIS 188 -130.33 -71.21 1 A GLN 192 -56.94 -70.48 1 A PRO 200 -57.35 -7.04 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP ION.PARAM ION.TOP WATER_REP.PARAM WATER.TOP FS4.PARAM FS4.TOP 38.3 4.27 0.00 0.00 -6.18 0.00 1.91 0.269 0.007 0.214 0.214 2.50 29.31 1599 17052 9.4 87.2 RANDOM 854279.88 854279.88 0 1 RESTRAINED THROUGHOUT 0 FOURIER SYNTHESIS PDB ENTRY 1ORN Engh & Huber FLAT MODEL 28.0823 0.317717 0.43 0.33 5.0 0.38 0.28 2.50 29.31 31 2114 9 417 1657 0.008 1.2 19.1 0.95 1.12 1.50 1.81 2.00 3.98 2.00 4.62 2.50 0.341 0.030 0.295 2.59 130 1432 10 8.3 78.5 36.7 2.5 50 1P59 19576 17421 -3 0.056 1 19.6 3.0 89.0 0.271 2.50 2.59 3.7 1997 2.7 83.1 refinement CNS 1.0 data scaling SCALEPACK phasing CNS Structure of a non-covalent Endonuclease III-DNA Complex 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N 6 N N A THR 3 C THR 6 HELX_P A PHE 18 C PHE 21 1 1 16 A ASN 29 C ASN 32 HELX_P A ALA 41 C ALA 44 1 2 13 A THR 44 C THR 47 HELX_P A TYR 59 C TYR 62 1 3 16 A THR 61 C THR 64 HELX_P A ALA 67 C ALA 70 1 4 7 A PRO 69 C PRO 72 HELX_P A ILE 77 C ILE 80 1 5 9 A LEU 82 C LEU 85 HELX_P A TYR 101 C TYR 104 1 6 20 A ASP 108 C ASP 111 HELX_P A LYS 114 C LYS 117 1 7 7 A GLY 119 C GLY 122 HELX_P A GLY 132 C GLY 135 1 8 14 A ASP 139 C ASP 142 HELX_P A GLY 150 C GLY 153 1 9 12 A SER 157 C SER 160 HELX_P A ILE 169 C ILE 172 1 10 13 A PRO 170 C PRO 173 HELX_P A GLU 172 C GLU 175 5 11 3 A GLU 173 C GLU 176 HELX_P A HIS 188 C HIS 191 1 12 16 A GLN 195 C GLN 198 HELX_P A CYS 199 C CYS 202 5 13 5 A LEU 201 C LEU 204 HELX_P A LEU 204 C LEU 207 5 14 4 A CYS 205 C CYS 208 HELX_P A LYS 214 C LYS 217 1 15 10 covale 1.607 both B DG 6 A O3' DG 6 1_555 B 5IU 7 A P 5IU 7 1_555 covale 1.600 both B 5IU 7 A O3' 5IU 7 1_555 B DG 8 A P DG 8 1_555 covale 1.613 both C DG 13 B O3' DG 2 1_555 C 5IU 14 B P 5IU 3 1_555 covale 1.608 both C 5IU 14 B O3' 5IU 3 1_555 C DC 15 B P DC 4 1_555 covale 1.619 both C DA 17 B O3' DA 6 1_555 C 3DR 18 B P 3DR 7 1_555 covale 1.602 both C 3DR 18 B O3' 3DR 7 1_555 C DG 19 B P DG 8 1_555 covale 1.605 both C DG 19 B O3' DG 8 1_555 C 5IU 20 B P 5IU 9 1_555 covale 1.606 both C 5IU 20 B O3' 5IU 9 1_555 C DC 21 B P DC 10 1_555 metalc 2.370 C DC 21 B OP1 DC 10 1_555 A NA 224 D NA NA 1_555 metalc 2.255 A MET 113 C O MET 116 1_555 A NA 224 D NA NA 1_555 metalc 2.376 A LEU 115 C O LEU 118 1_555 A NA 224 D NA NA 1_555 metalc 2.568 A VAL 118 C O VAL 121 1_555 A NA 224 D NA NA 1_555 metalc 2.634 A CYS 189 C SG CYS 192 1_555 A SF4 300 E FE2 SF4 1_555 metalc 2.462 A CYS 196 C SG CYS 199 1_555 A SF4 300 E FE3 SF4 1_555 metalc 2.339 A CYS 199 C SG CYS 202 1_555 A SF4 300 E FE1 SF4 1_555 metalc 2.423 A CYS 205 C SG CYS 208 1_555 A SF4 300 E FE4 SF4 1_555 hydrog WATSON-CRICK B DA 2 A N1 DA 2 1_555 C DT 22 B N3 DT 11 1_555 hydrog WATSON-CRICK B DA 2 A N6 DA 2 1_555 C DT 22 B O4 DT 11 1_555 hydrog WATSON-CRICK B DG 3 A N1 DG 3 1_555 C DC 21 B N3 DC 10 1_555 hydrog WATSON-CRICK B DG 3 A N2 DG 3 1_555 C DC 21 B O2 DC 10 1_555 hydrog WATSON-CRICK B DG 3 A O6 DG 3 1_555 C DC 21 B N4 DC 10 1_555 hydrog WATSON-CRICK B DA 4 A N1 DA 4 1_555 C 5IU 20 B N3 5IU 9 1_555 hydrog WATSON-CRICK B DA 4 A N6 DA 4 1_555 C 5IU 20 B O4 5IU 9 1_555 hydrog WATSON-CRICK B DC 5 A N3 DC 5 1_555 C DG 19 B N1 DG 8 1_555 hydrog WATSON-CRICK B DC 5 A N4 DC 5 1_555 C DG 19 B O6 DG 8 1_555 hydrog WATSON-CRICK B DC 5 A O2 DC 5 1_555 C DG 19 B N2 DG 8 1_555 hydrog WATSON-CRICK B 5IU 7 A N3 5IU 7 1_555 C DA 17 B N1 DA 6 1_555 hydrog WATSON-CRICK B 5IU 7 A O4 5IU 7 1_555 C DA 17 B N6 DA 6 1_555 hydrog WATSON-CRICK B DG 8 A N1 DG 8 1_555 C DC 16 B N3 DC 5 1_555 hydrog WATSON-CRICK B DG 8 A N2 DG 8 1_555 C DC 16 B O2 DC 5 1_555 hydrog WATSON-CRICK B DG 8 A O6 DG 8 1_555 C DC 16 B N4 DC 5 1_555 hydrog WATSON-CRICK B DG 9 A N1 DG 9 1_555 C DC 15 B N3 DC 4 1_555 hydrog WATSON-CRICK B DG 9 A N2 DG 9 1_555 C DC 15 B O2 DC 4 1_555 hydrog WATSON-CRICK B DG 9 A O6 DG 9 1_555 C DC 15 B N4 DC 4 1_555 hydrog WATSON-CRICK B DA 10 A N1 DA 10 1_555 C 5IU 14 B N3 5IU 3 1_555 hydrog WATSON-CRICK B DA 10 A N6 DA 10 1_555 C 5IU 14 B O4 5IU 3 1_555 hydrog WATSON-CRICK B DC 11 A N3 DC 11 1_555 C DG 13 B N1 DG 2 1_555 hydrog WATSON-CRICK B DC 11 A N4 DC 11 1_555 C DG 13 B O6 DG 2 1_555 hydrog WATSON-CRICK B DC 11 A O2 DC 11 1_555 C DG 13 B N2 DG 2 1_555 HYDROLASE/DNA DNA REPAIR, DNA GLYCOSYLASE, [4FE-4S] CLUSTER, IRON-SULFUR CLUSTER, HYDROLASE-DNA COMPLEX 1P59 PDB 1 1P59 1P59 PDB 2 1P59 1P59 PDB 3 1P59 1 11 1P59 1 11 1P59 B 1 1 11 12 22 1P59 12 22 1P59 C 2 1 11 -2 223 1P59 -2 223 1P59 A 3 1 226 BINDING SITE FOR RESIDUE NA A 224 A NA 224 Software 4 BINDING SITE FOR RESIDUE SF4 A 300 A SF4 300 Software 7 A MET 113 C MET 116 4 1_555 A LEU 115 C LEU 118 4 1_555 A VAL 118 C VAL 121 4 1_555 C DC 21 B DC 10 4 1_555 A LEU 149 C LEU 152 7 1_555 A PHE 184 C PHE 187 7 1_555 A CYS 189 C CYS 192 7 1_555 A CYS 196 C CYS 199 7 1_555 A CYS 199 C CYS 202 7 1_555 A CYS 205 C CYS 208 7 1_555 A GLY 208 C GLY 211 7 1_555 18 P 21 21 2