1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lukavsky, P.J. Kim, I. Otto, G.A. Puglisi, J.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 10 1033 1038 10.1038/nsb1004 14578934 Structure of HCV IRES domain II determined by NMR. 2003 10.2210/pdb1p5o/pdb pdb_00001p5o 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 24776.691 77-MER HCV IRES domain II (residues 45-117) 1 syn polymer no no GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 37.750 A 1 A 77 -5.915 A_G1:C77_A 1 -49.321 0.287 -0.065 -0.167 14.192 1 19 A 2 A 76 -13.190 A_G2:C76_A 2 -28.496 0.597 0.691 -0.157 10.777 1 19 A 3 A 75 -0.714 A_C3:G75_A 3 -24.492 -0.605 0.676 -0.153 21.002 1 20 A 4 A 74 -3.318 A_U4:A74_A 4 -19.806 -0.647 0.399 -0.060 -1.969 1 19 A 5 A 73 -0.909 A_G5:C73_A 5 -22.296 0.453 0.714 -0.240 -6.945 1 19 A 7 A 72 1.399 A_G7:C72_A 6 -26.203 0.550 0.385 -0.084 -3.011 1 A 8 A 71 15.469 A_A8:U71_A 7 -25.743 -0.485 1.047 -0.208 -11.469 1 A 9 A 70 6.844 A_G9:C70_A 8 -32.916 0.823 0.549 -0.036 11.191 1 19 A 10 A 69 -8.464 A_G10:C69_A 9 -8.360 0.509 0.883 -0.214 10.768 1 19 A 16 A 68 7.648 A_C16:G68_A 10 -31.070 -0.399 0.168 0.017 10.354 1 20 A 17 A 67 9.023 A_U17:A67_A 11 -24.568 0.414 0.627 -0.218 3.030 1 19 A 18 A 66 -5.779 A_G18:C66_A 12 -27.521 0.308 -0.017 -0.181 -5.956 28 A 19 A 65 -12.433 A_U19:G65_A 13 -15.813 2.160 -0.030 -0.516 -6.053 1 19 A 20 A 63 5.770 A_C20:G63_A 14 -16.924 -0.171 -0.378 -0.246 15.335 1 18 A 21 A 62 19.808 A_U21:C62_A 15 -15.699 -0.720 0.377 -1.613 0.111 1 19 A 23 A 60 9.262 A_C23:G60_A 16 -21.759 -0.429 -1.125 -0.502 -6.557 1 20 A 24 A 59 1.574 A_A24:U59_A 17 -11.161 -0.430 -0.421 -0.350 15.028 1 19 A 25 A 58 -1.463 A_C25:G58_A 18 -12.435 -0.307 -0.342 -0.121 25.173 A 26 A 57 60.971 A_G26:A57_A 19 0.678 1.038 0.350 -5.516 -3.555 1 19 A 27 A 56 0.046 A_C27:G56_A 20 -15.708 -0.243 -0.479 -0.254 -38.591 1 20 A 28 A 55 -10.970 A_A28:U55_A 21 5.863 0.150 -1.605 -0.121 2.182 9 11 A 29 A 54 -9.278 A_G29:A54_A 22 6.289 6.524 -0.927 -3.301 -0.789 4 24 A 30 A 53 -108.942 A_A30:U53_A 23 -15.655 -3.946 -1.065 -1.384 -31.405 8 2 A 31 A 51 -178.955 A_A31:A51_A 24 -16.420 -5.742 -0.629 4.547 6.537 28 A 33 A 49 6.891 A_G33:U49_A 25 -30.013 -2.437 -0.002 -0.409 8.877 1 19 A 34 A 48 4.299 A_C34:G48_A 26 -15.995 -0.251 -0.769 -0.142 -19.445 1 19 A 35 A 47 8.040 A_G35:C47_A 27 -11.155 0.161 -2.010 -0.623 2.808 1 A 36 A 46 7.656 A_U36:G46_A 28 6.407 1.145 -1.374 0.082 -0.132 1 19 A 37 A 45 -1.972 A_C37:G45_A 29 -4.452 -0.391 0.093 -0.101 2.296 10 A 39 A 43 -20.301 A_A39:A43_A 30 64.486 4.857 -1.893 -4.511 3.438 40.830 A A 1 2 24.502 A A 77 76 3.975 16.594 -0.175 -0.534 AA_G1G2:C76C77_AA 1 -4.964 7.329 37.116 -2.944 -0.401 3.354 36.939 A A 2 3 -13.041 A A 76 75 3.002 -8.182 1.576 -1.252 AA_G2C3:G75C76_AA 2 4.143 -6.603 35.821 -0.886 -1.936 3.292 31.499 A A 3 4 -16.548 A A 75 74 3.087 -8.868 0.132 -1.176 AA_C3U4:A74G75_AA 3 0.080 -0.150 30.255 -0.520 -0.228 3.403 34.904 A A 4 5 6.017 A A 74 73 3.612 3.600 0.124 -1.712 AA_U4G5:C73A74_AA 4 -2.701 4.515 34.622 -3.441 -0.647 2.964 37.588 A A 5 7 5.295 A A 73 72 3.125 3.405 -0.721 -1.014 AA_G5G7:C72C73_AA 5 2.822 -4.389 37.337 -1.988 1.462 2.472 37.056 A A 7 8 5.963 A A 72 71 2.614 3.778 0.324 -0.899 AA_G7A8:U71C72_AA 6 -3.492 5.512 36.709 -1.810 -0.876 2.931 41.293 A A 8 9 12.605 A A 71 70 3.214 8.817 -0.633 -0.764 AA_A8G9:C70U71_AA 7 3.354 -4.795 40.247 -1.986 1.241 2.519 31.309 A A 9 10 -3.169 A A 70 69 2.450 -1.705 -0.397 -0.784 AA_G9G10:C69C70_AA 8 -4.078 7.580 31.004 -1.207 0.148 2.671 38.811 A A 16 17 23.304 A A 68 67 3.174 15.067 -0.007 -0.657 AA_C16U17:A67G68_AA 9 -4.833 7.476 35.554 -2.710 -0.542 2.467 37.745 A A 17 18 22.703 A A 67 66 3.116 14.304 -0.784 -0.838 AA_U17G18:C66A67_AA 10 4.821 -7.652 34.697 -2.945 1.768 3.315 49.481 A A 18 19 -3.816 A A 66 65 3.240 -3.191 0.608 -0.935 AA_G18U19:G65C66_AA 11 2.400 -2.870 49.330 -0.880 -0.548 2.128 21.407 A A 19 20 24.541 A A 65 63 3.015 8.778 0.238 -1.487 AA_U19C20:G63G65_AA 12 4.508 -12.602 19.020 -6.981 0.889 2.414 32.139 A A 20 21 28.858 A A 63 62 2.713 15.121 0.913 0.852 AA_C20U21:C62G63_AA 13 -9.302 17.751 26.899 -0.786 -3.079 5.821 79.047 A A 21 23 15.398 A A 62 60 6.483 19.432 -1.285 -1.846 AA_U21C23:G60C62_AA 14 8.103 -6.421 76.638 -2.468 1.434 3.051 34.591 A A 23 24 40.020 A A 60 59 3.611 21.905 -0.266 0.400 AA_C23A24:U59G60_AA 15 -6.174 11.280 26.224 -3.280 -0.666 2.703 36.751 A A 24 25 -3.041 A A 59 58 2.660 -1.917 0.593 -1.088 AA_A24C25:G58U59_AA 16 -0.530 0.841 36.699 -1.511 -1.000 -0.697 175.761 A A 25 26 -0.806 A A 58 57 -0.058 -1.606 2.328 -3.929 AA_C25G26:A57G58_AA 17 -164.941 82.773 147.192 -1.966 -1.111 -1.690 175.919 A A 26 27 -46.825 A A 57 56 -3.802 -92.783 -0.631 -3.924 AA_G26C27:G56A57_AA 18 147.276 -74.326 93.061 -2.547 -0.610 4.959 26.601 A A 27 28 7.219 A A 56 55 5.341 3.298 -0.141 -2.021 AA_C27A28:U55G56_AA 19 4.423 -9.682 26.033 -5.770 2.156 2.314 65.370 A A 28 29 -7.005 A A 55 54 2.319 -7.547 -0.373 0.109 AA_A28G29:A54U55_AA 20 -4.393 4.077 64.848 0.322 0.216 2.699 -14.869 A A 29 30 -73.984 A A 54 53 3.386 14.238 -4.546 -1.376 AA_G29A30:U53A54_AA 21 1.523 7.914 -4.018 -12.393 -15.673 2.891 84.477 A A 30 31 -2.643 A A 53 51 2.886 -3.552 1.406 -0.789 AA_A30A31:A51U53_AA 22 -1.477 1.099 84.405 -0.514 -1.076 1.715 -17.483 A A 31 33 -46.713 A A 51 49 6.729 11.148 -0.276 1.054 AA_A31G33:U49A51_AA 23 -11.720 -49.107 -6.657 -16.270 -14.365 3.553 45.347 A A 33 34 -11.716 A A 49 48 3.437 -8.979 -0.213 -0.943 AA_G33C34:G48U49_AA 24 -0.141 0.183 44.495 -0.364 0.263 3.626 35.227 A A 34 35 30.817 A A 48 47 4.583 17.798 0.228 -0.720 AA_C34G35:C47G48_AA 25 3.814 -6.604 30.288 -4.781 0.392 2.533 33.654 A A 35 36 9.079 A A 47 46 2.743 5.217 0.071 -0.916 AA_G35U36:G46C47_AA 26 -5.101 8.878 32.876 -2.277 -0.803 3.953 24.566 A A 36 37 -5.304 A A 46 45 3.734 -2.241 -0.582 -2.122 AA_U36C37:G45G46_AA 27 -4.479 10.598 24.058 -4.166 -0.271 5.337 97.363 A A 37 39 -10.512 A A 45 43 5.512 -15.527 0.449 0.175 AA_C37A39:A43G45_AA 28 36.505 -24.715 90.844 0.576 0.783 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-11-04 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 2003-04-27 REL REL Synthesized by in vitro transcription from linearized plasmid DNA using T7 RNA polymerase sample The structure was solved using triple resonance, multidimensional NMR spectroscopy and TROSY-type experiments to measure residual dipolar couplings lowest restraint violation and total energy 200 12 2D S-NOESY 2D NOESY DQF-COSY 2D HP-COSY 3D_13C-separated_NOESY 3D HCP 3D HMQC TOCSY 100mM NaCl, 5mM MgCl2 6.40 ambient 288 K 100mM NaCl, 5mM MgCl2 6.40 ambient 298 K 100mM NaCl, 5mM MgCl2 6.40 ambient 303 K see reference above see reference above 1 closest to the average 0.5-1.5mM HCV IRES domain II RNA 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride 96% D2O, 4% H2O 0.5-1.5mM HCV IRES domain II RNA 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride 100% D2O 0.5-1.5mM HCV IRES domain II RNA U-15N,13C 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride 96% D2O, 4% H2O 0.5-1.5mM HCV IRES domain II RNA U-15N,13C 10mM phosphate buffer 100mM sodium chloride 5mM magnesium chloride 100% D2O Varian processing VNMR 6.1C Goddard, T.D. & Kneller D.G. data analysis Sparky 3 Brunger, A.T. refinement X-PLOR 3.1 Brunger, A.T. et al refinement CNS 1.1 Zweckstetter, M. & Bax, A. refinement PALES 1 500 Varian INOVA 800 Varian INOVA GUA 1 n 1 G 1 A GUA 2 n 2 G 2 A CYT 3 n 3 C 3 A URI 4 n 4 U 4 A GUA 5 n 5 G 5 A URI 6 n 6 U 6 A GUA 7 n 7 G 7 A ADE 8 n 8 A 8 A GUA 9 n 9 G 9 A GUA 10 n 10 G 10 A ADE 11 n 11 A 11 A ADE 12 n 12 A 12 A CYT 13 n 13 C 13 A URI 14 n 14 U 14 A ADE 15 n 15 A 15 A CYT 16 n 16 C 16 A URI 17 n 17 U 17 A GUA 18 n 18 G 18 A URI 19 n 19 U 19 A CYT 20 n 20 C 20 A URI 21 n 21 U 21 A URI 22 n 22 U 22 A CYT 23 n 23 C 23 A ADE 24 n 24 A 24 A CYT 25 n 25 C 25 A GUA 26 n 26 G 26 A CYT 27 n 27 C 27 A ADE 28 n 28 A 28 A GUA 29 n 29 G 29 A ADE 30 n 30 A 30 A ADE 31 n 31 A 31 A ADE 32 n 32 A 32 A GUA 33 n 33 G 33 A CYT 34 n 34 C 34 A GUA 35 n 35 G 35 A URI 36 n 36 U 36 A CYT 37 n 37 C 37 A URI 38 n 38 U 38 A ADE 39 n 39 A 39 A GUA 40 n 40 G 40 A CYT 41 n 41 C 41 A CYT 42 n 42 C 42 A ADE 43 n 43 A 43 A URI 44 n 44 U 44 A GUA 45 n 45 G 45 A GUA 46 n 46 G 46 A CYT 47 n 47 C 47 A GUA 48 n 48 G 48 A URI 49 n 49 U 49 A URI 50 n 50 U 50 A ADE 51 n 51 A 51 A GUA 52 n 52 G 52 A URI 53 n 53 U 53 A ADE 54 n 54 A 54 A URI 55 n 55 U 55 A GUA 56 n 56 G 56 A ADE 57 n 57 A 57 A GUA 58 n 58 G 58 A URI 59 n 59 U 59 A GUA 60 n 60 G 60 A URI 61 n 61 U 61 A CYT 62 n 62 C 62 A GUA 63 n 63 G 63 A URI 64 n 64 U 64 A GUA 65 n 65 G 65 A CYT 66 n 66 C 66 A ADE 67 n 67 A 67 A GUA 68 n 68 G 68 A CYT 69 n 69 C 69 A CYT 70 n 70 C 70 A URI 71 n 71 U 71 A CYT 72 n 72 C 72 A CYT 73 n 73 C 73 A ADE 74 n 74 A 74 A GUA 75 n 75 G 75 A CYT 76 n 76 C 76 A CYT 77 n 77 C 77 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 3 A A O2' H61 A A 39 43 1.58 3 A A O6 HO2' G G 29 52 1.58 4 A A O6 HO2' G G 29 52 1.50 6 A A O6 HO2' G G 29 52 1.57 7 A A H61 O2' A U 32 50 1.60 8 A A O6 HO2' G G 29 52 1.46 8 A A O6 H41 G C 18 66 1.59 10 A A O2' H61 A A 39 43 1.59 11 A A H61 O4 A U 28 55 1.51 2 A C 76 0.059 SIDE CHAIN Solution Structure of HCV IRES Domain II 1 N N hydrog G-C PAIR A G 1 A N1 G 1 1_555 A C 77 A N3 C 77 1_555 hydrog G-G MISPAIR A G 2 A O6 G 2 1_555 A G 75 A N1 G 75 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 76 A N3 C 76 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 76 A O2 C 76 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 76 A N4 C 76 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 75 A N1 G 75 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 75 A O6 G 75 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 75 A N2 G 75 1_555 hydrog WATSON-CRICK A U 4 A N3 U 4 1_555 A A 74 A N1 A 74 1_555 hydrog WATSON-CRICK A U 4 A O4 U 4 1_555 A A 74 A N6 A 74 1_555 hydrog G-C PAIR A G 5 A O6 G 5 1_555 A C 72 A N4 C 72 1_555 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 73 A N3 C 73 1_555 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 73 A O2 C 73 1_555 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 73 A N4 C 73 1_555 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 A C 72 A N3 C 72 1_555 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 A C 72 A O2 C 72 1_555 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 A C 72 A N4 C 72 1_555 hydrog A-U PAIR A A 8 A N1 A 8 1_555 A U 71 A N3 U 71 1_555 hydrog G-C PAIR A G 9 A O6 G 9 1_555 A C 69 A N4 C 69 1_555 hydrog G-C PAIR A G 9 A N1 G 9 1_555 A C 70 A N3 C 70 1_555 hydrog WATSON-CRICK A G 10 A N1 G 10 1_555 A C 69 A N3 C 69 1_555 hydrog WATSON-CRICK A G 10 A N2 G 10 1_555 A C 69 A O2 C 69 1_555 hydrog WATSON-CRICK A G 10 A O6 G 10 1_555 A C 69 A N4 C 69 1_555 hydrog WATSON-CRICK A C 16 A N3 C 16 1_555 A G 68 A N1 G 68 1_555 hydrog WATSON-CRICK A C 16 A N4 C 16 1_555 A G 68 A O6 G 68 1_555 hydrog WATSON-CRICK A C 16 A O2 C 16 1_555 A G 68 A N2 G 68 1_555 hydrog WATSON-CRICK A U 17 A N3 U 17 1_555 A A 67 A N1 A 67 1_555 hydrog WATSON-CRICK A U 17 A O4 U 17 1_555 A A 67 A N6 A 67 1_555 hydrog WATSON-CRICK A G 18 A N1 G 18 1_555 A C 66 A N3 C 66 1_555 hydrog WATSON-CRICK A G 18 A N2 G 18 1_555 A C 66 A O2 C 66 1_555 hydrog WATSON-CRICK A G 18 A O6 G 18 1_555 A C 66 A N4 C 66 1_555 hydrog TYPE_28_PAIR A U 19 A N3 U 19 1_555 A G 65 A O6 G 65 1_555 hydrog TYPE_28_PAIR A U 19 A O2 U 19 1_555 A G 65 A N1 G 65 1_555 hydrog WATSON-CRICK A C 20 A N3 C 20 1_555 A G 63 A N1 G 63 1_555 hydrog WATSON-CRICK A C 20 A N4 C 20 1_555 A G 63 A O6 G 63 1_555 hydrog WATSON-CRICK A C 20 A O2 C 20 1_555 A G 63 A N2 G 63 1_555 hydrog TYPE_18_PAIR A U 21 A N3 U 21 1_555 A C 62 A N3 C 62 1_555 hydrog TYPE_18_PAIR A U 21 A O4 U 21 1_555 A C 62 A N4 C 62 1_555 hydrog WATSON-CRICK A C 23 A N3 C 23 1_555 A G 60 A N1 G 60 1_555 hydrog WATSON-CRICK A C 23 A N4 C 23 1_555 A G 60 A O6 G 60 1_555 hydrog WATSON-CRICK A C 23 A O2 C 23 1_555 A G 60 A N2 G 60 1_555 hydrog WATSON-CRICK A A 24 A N1 A 24 1_555 A U 59 A N3 U 59 1_555 hydrog WATSON-CRICK A A 24 A N6 A 24 1_555 A U 59 A O4 U 59 1_555 hydrog WATSON-CRICK A C 25 A N3 C 25 1_555 A G 58 A N1 G 58 1_555 hydrog WATSON-CRICK A C 25 A N4 C 25 1_555 A G 58 A O6 G 58 1_555 hydrog WATSON-CRICK A C 25 A O2 C 25 1_555 A G 58 A N2 G 58 1_555 hydrog G-A MISPAIR A G 26 A N7 G 26 1_555 A A 57 A N6 A 57 1_555 hydrog WATSON-CRICK A C 27 A N3 C 27 1_555 A G 56 A N1 G 56 1_555 hydrog WATSON-CRICK A C 27 A N4 C 27 1_555 A G 56 A O6 G 56 1_555 hydrog WATSON-CRICK A C 27 A O2 C 27 1_555 A G 56 A N2 G 56 1_555 hydrog WATSON-CRICK A A 28 A N1 A 28 1_555 A U 55 A N3 U 55 1_555 hydrog WATSON-CRICK A A 28 A N6 A 28 1_555 A U 55 A O4 U 55 1_555 hydrog TYPE_11_PAIR A G 29 A N2 G 29 1_555 A A 54 A N7 A 54 1_555 hydrog TYPE_11_PAIR A G 29 A N3 G 29 1_555 A A 54 A N6 A 54 1_555 hydrog G-U MISPAIR A G 29 A N2 G 29 1_555 A U 55 A O4 U 55 1_555 hydrog REVERSED HOOGSTEEN A A 30 A N6 A 30 1_555 A U 53 A O2 U 53 1_555 hydrog REVERSED HOOGSTEEN A A 30 A N7 A 30 1_555 A U 53 A N3 U 53 1_555 hydrog TYPE_2_PAIR A A 31 A N6 A 31 1_555 A A 51 A N7 A 51 1_555 hydrog TYPE_2_PAIR A A 31 A N7 A 31 1_555 A A 51 A N6 A 51 1_555 hydrog TYPE_28_PAIR A G 33 A N1 G 33 1_555 A U 49 A O2 U 49 1_555 hydrog TYPE_28_PAIR A G 33 A O6 G 33 1_555 A U 49 A N3 U 49 1_555 hydrog WATSON-CRICK A C 34 A N3 C 34 1_555 A G 48 A N1 G 48 1_555 hydrog WATSON-CRICK A C 34 A N4 C 34 1_555 A G 48 A O6 G 48 1_555 hydrog WATSON-CRICK A C 34 A O2 C 34 1_555 A G 48 A N2 G 48 1_555 hydrog WATSON-CRICK A G 35 A N1 G 35 1_555 A C 47 A N3 C 47 1_555 hydrog WATSON-CRICK A G 35 A N2 G 35 1_555 A C 47 A O2 C 47 1_555 hydrog WATSON-CRICK A G 35 A O6 G 35 1_555 A C 47 A N4 C 47 1_555 hydrog U-G MISPAIR A U 36 A O2 U 36 1_555 A G 46 A N1 G 46 1_555 hydrog WATSON-CRICK A C 37 A N3 C 37 1_555 A G 45 A N1 G 45 1_555 hydrog WATSON-CRICK A C 37 A N4 C 37 1_555 A G 45 A O6 G 45 1_555 hydrog WATSON-CRICK A C 37 A O2 C 37 1_555 A G 45 A N2 G 45 1_555 hydrog A-A MISPAIR A A 39 A N3 A 39 1_555 A A 43 A N6 A 43 1_555 hydrog G-U MISPAIR A G 52 A N2 G 52 1_555 A U 53 A O4 U 53 1_555 RNA RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME ENTRY SITE, tRNA, LOOP E MOTIF, HAIRPIN LOOP, RNA 1P5O PDB 1 1P5O 1 77 1P5O 1 77 1P5O A 1 1 77