0.012389
0.000000
0.000000
0.000000
0.012389
0.000000
0.000000
0.000000
0.010607
0.00000
0.00000
0.00000
Sabini, E.
Ort, S.
Monnerjahn, C.
Konrad, M.
Lavie, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
80.720
80.720
94.280
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C9 H13 N3 O5
243.217
CYTARABINE
1-BETA-D-ARABINOFURANOSYLCYTOSINE; ARA-C
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
O
N
57
N
C
N
58
R
C
N
59
N
O
N
60
R
C
Y
61
N
N
Y
62
N
C
Y
63
N
C
Y
64
N
C
Y
65
N
N
Y
66
N
C
N
67
N
O
N
68
N
N
N
69
S
C
N
70
N
O
N
71
S
C
N
72
N
O
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
N
N
87
S
C
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
N
N
94
N
C
N
95
N
N
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
N
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
N
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
O
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
Y
214
N
C
Y
215
N
N
Y
216
N
C
Y
217
N
C
Y
218
N
N
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
S
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
N
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
S
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
MG
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
O
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
R
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
N
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
N
450
N
C
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
Y
69
N
sing
Y
70
N
sing
Y
71
N
doub
N
72
N
sing
Y
73
N
sing
N
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
Y
215
N
sing
Y
216
N
doub
Y
217
N
doub
N
218
N
sing
Y
219
N
sing
N
220
N
sing
Y
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
10
513
519
10.1038/nsb942
12808445
Structure of human dCK suggests strategies to improve anticancer and antiviral therapy
2003
10.2210/pdb1p5z/pdb
pdb_00001p5z
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
CCD
2002-11-26
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
22-ID
APS
1.0000
SYNCHROTRON
APS BEAMLINE 22-ID
30834.779
Deoxycytidine kinase
2.7.1.74
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
243.217
CYTARABINE
1
syn
non-polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
18.015
water
176
nat
water
dCK
no
no
GSHMATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKN
GGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQD
WHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLD
VNEDFKDKYESLVEKVKEFLSTL
GSHMATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKN
GGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQD
WHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLD
VNEDFKDKYESLVEKVKEFLSTL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
DCK
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
pET14b
1
2.49
50.59
VAPOR DIFFUSION, HANGING DROP
9.0
20%(w/v)PEG1K, 100mM magnesium acetate, 100mM TRIS, 5mM araC, 5mM ADP, 5mM MgCl2, 5mM DTT, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-07-01
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
COMPLEXED WITH 2'-DEOXYCYTIDINE AND ADP
COMPLEXED WITH 2'-DEOXYCYTIDINE AND ADP
COMPLEXED WITH GEMCITABINE
RCSB
Y
RCSB
2003-04-28
REL
REL
MG
MAGNESIUM ION
AR3
CYTARABINE
ADP
ADENOSINE-5'-DIPHOSPHATE
HOH
water
MG
401
2
MG
MG
401
B
ARA
304
3
AR3
AR3
304
B
ADP
301
4
ADP
ADP
301
B
HOH
1
5
HOH
HOH
402
B
HOH
2
5
HOH
HOH
403
B
HOH
3
5
HOH
HOH
404
B
HOH
4
5
HOH
HOH
405
B
HOH
5
5
HOH
HOH
406
B
HOH
6
5
HOH
HOH
407
B
HOH
7
5
HOH
HOH
408
B
HOH
8
5
HOH
HOH
409
B
HOH
9
5
HOH
HOH
410
B
HOH
10
5
HOH
HOH
411
B
HOH
11
5
HOH
HOH
412
B
HOH
12
5
HOH
HOH
413
B
HOH
13
5
HOH
HOH
414
B
HOH
14
5
HOH
HOH
415
B
HOH
15
5
HOH
HOH
416
B
HOH
16
5
HOH
HOH
417
B
HOH
17
5
HOH
HOH
418
B
HOH
18
5
HOH
HOH
419
B
HOH
19
5
HOH
HOH
420
B
HOH
20
5
HOH
HOH
421
B
HOH
21
5
HOH
HOH
422
B
HOH
22
5
HOH
HOH
423
B
HOH
23
5
HOH
HOH
424
B
HOH
24
5
HOH
HOH
425
B
HOH
25
5
HOH
HOH
426
B
HOH
26
5
HOH
HOH
427
B
HOH
27
5
HOH
HOH
428
B
HOH
28
5
HOH
HOH
429
B
HOH
29
5
HOH
HOH
430
B
HOH
30
5
HOH
HOH
431
B
HOH
31
5
HOH
HOH
432
B
HOH
32
5
HOH
HOH
433
B
HOH
33
5
HOH
HOH
434
B
HOH
34
5
HOH
HOH
435
B
HOH
35
5
HOH
HOH
436
B
HOH
36
5
HOH
HOH
437
B
HOH
37
5
HOH
HOH
438
B
HOH
38
5
HOH
HOH
439
B
HOH
39
5
HOH
HOH
440
B
HOH
40
5
HOH
HOH
441
B
HOH
41
5
HOH
HOH
442
B
HOH
42
5
HOH
HOH
443
B
HOH
43
5
HOH
HOH
444
B
HOH
44
5
HOH
HOH
445
B
HOH
45
5
HOH
HOH
446
B
HOH
46
5
HOH
HOH
447
B
HOH
47
5
HOH
HOH
448
B
HOH
48
5
HOH
HOH
449
B
HOH
49
5
HOH
HOH
450
B
HOH
50
5
HOH
HOH
451
B
HOH
51
5
HOH
HOH
452
B
HOH
52
5
HOH
HOH
453
B
HOH
53
5
HOH
HOH
454
B
HOH
54
5
HOH
HOH
455
B
HOH
55
5
HOH
HOH
456
B
HOH
56
5
HOH
HOH
457
B
HOH
57
5
HOH
HOH
458
B
HOH
58
5
HOH
HOH
459
B
HOH
59
5
HOH
HOH
460
B
HOH
60
5
HOH
HOH
461
B
HOH
61
5
HOH
HOH
462
B
HOH
62
5
HOH
HOH
463
B
HOH
63
5
HOH
HOH
464
B
HOH
64
5
HOH
HOH
465
B
HOH
65
5
HOH
HOH
466
B
HOH
66
5
HOH
HOH
467
B
HOH
67
5
HOH
HOH
468
B
HOH
68
5
HOH
HOH
469
B
HOH
69
5
HOH
HOH
470
B
HOH
70
5
HOH
HOH
471
B
HOH
71
5
HOH
HOH
472
B
HOH
72
5
HOH
HOH
473
B
HOH
73
5
HOH
HOH
474
B
HOH
74
5
HOH
HOH
475
B
HOH
75
5
HOH
HOH
476
B
HOH
76
5
HOH
HOH
477
B
HOH
77
5
HOH
HOH
478
B
HOH
78
5
HOH
HOH
479
B
HOH
79
5
HOH
HOH
480
B
HOH
81
5
HOH
HOH
481
B
HOH
82
5
HOH
HOH
482
B
HOH
83
5
HOH
HOH
483
B
HOH
84
5
HOH
HOH
484
B
HOH
86
5
HOH
HOH
485
B
HOH
87
5
HOH
HOH
486
B
HOH
88
5
HOH
HOH
487
B
HOH
89
5
HOH
HOH
488
B
HOH
90
5
HOH
HOH
489
B
HOH
91
5
HOH
HOH
490
B
HOH
92
5
HOH
HOH
491
B
HOH
93
5
HOH
HOH
492
B
HOH
94
5
HOH
HOH
493
B
HOH
95
5
HOH
HOH
494
B
HOH
96
5
HOH
HOH
495
B
HOH
97
5
HOH
HOH
496
B
HOH
98
5
HOH
HOH
497
B
HOH
99
5
HOH
HOH
498
B
HOH
100
5
HOH
HOH
499
B
HOH
101
5
HOH
HOH
500
B
HOH
102
5
HOH
HOH
501
B
HOH
103
5
HOH
HOH
502
B
HOH
104
5
HOH
HOH
503
B
HOH
106
5
HOH
HOH
504
B
HOH
107
5
HOH
HOH
505
B
HOH
108
5
HOH
HOH
506
B
HOH
109
5
HOH
HOH
507
B
HOH
110
5
HOH
HOH
508
B
HOH
111
5
HOH
HOH
509
B
HOH
112
5
HOH
HOH
510
B
HOH
113
5
HOH
HOH
511
B
HOH
114
5
HOH
HOH
512
B
HOH
115
5
HOH
HOH
513
B
HOH
116
5
HOH
HOH
514
B
HOH
118
5
HOH
HOH
515
B
HOH
119
5
HOH
HOH
516
B
HOH
120
5
HOH
HOH
517
B
HOH
122
5
HOH
HOH
518
B
HOH
127
5
HOH
HOH
519
B
HOH
130
5
HOH
HOH
520
B
HOH
131
5
HOH
HOH
521
B
HOH
134
5
HOH
HOH
522
B
HOH
135
5
HOH
HOH
523
B
HOH
136
5
HOH
HOH
524
B
HOH
137
5
HOH
HOH
525
B
HOH
139
5
HOH
HOH
526
B
HOH
141
5
HOH
HOH
527
B
HOH
142
5
HOH
HOH
528
B
HOH
144
5
HOH
HOH
529
B
HOH
145
5
HOH
HOH
530
B
HOH
150
5
HOH
HOH
531
B
HOH
151
5
HOH
HOH
532
B
HOH
152
5
HOH
HOH
533
B
HOH
155
5
HOH
HOH
534
B
HOH
156
5
HOH
HOH
535
B
HOH
157
5
HOH
HOH
536
B
HOH
158
5
HOH
HOH
537
B
HOH
159
5
HOH
HOH
538
B
HOH
160
5
HOH
HOH
539
B
HOH
161
5
HOH
HOH
540
B
HOH
162
5
HOH
HOH
541
B
HOH
163
5
HOH
HOH
542
B
HOH
164
5
HOH
HOH
543
B
HOH
166
5
HOH
HOH
544
B
HOH
169
5
HOH
HOH
545
B
HOH
171
5
HOH
HOH
546
B
HOH
172
5
HOH
HOH
547
B
HOH
173
5
HOH
HOH
548
B
HOH
174
5
HOH
HOH
549
B
HOH
175
5
HOH
HOH
550
B
HOH
176
5
HOH
HOH
551
B
HOH
177
5
HOH
HOH
552
B
HOH
178
5
HOH
HOH
553
B
HOH
181
5
HOH
HOH
554
B
HOH
183
5
HOH
HOH
555
B
HOH
184
5
HOH
HOH
556
B
HOH
188
5
HOH
HOH
557
B
HOH
191
5
HOH
HOH
558
B
HOH
193
5
HOH
HOH
559
B
HOH
195
5
HOH
HOH
560
B
HOH
196
5
HOH
HOH
561
B
HOH
197
5
HOH
HOH
562
B
HOH
198
5
HOH
HOH
563
B
HOH
200
5
HOH
HOH
564
B
HOH
202
5
HOH
HOH
565
B
HOH
203
5
HOH
HOH
566
B
HOH
204
5
HOH
HOH
567
B
HOH
205
5
HOH
HOH
568
B
HOH
206
5
HOH
HOH
569
B
HOH
207
5
HOH
HOH
570
B
HOH
208
5
HOH
HOH
571
B
HOH
209
5
HOH
HOH
572
B
HOH
210
5
HOH
HOH
573
B
HOH
211
5
HOH
HOH
574
B
HOH
402
5
HOH
HOH
575
B
HOH
403
5
HOH
HOH
576
B
HOH
404
5
HOH
HOH
577
B
n
1
-2
B
n
2
-1
B
n
3
0
B
n
4
1
B
n
5
2
B
n
6
3
B
n
7
4
B
n
8
5
B
n
9
6
B
n
10
7
B
n
11
8
B
n
12
9
B
n
13
10
B
n
14
11
B
n
15
12
B
n
16
13
B
n
17
14
B
n
18
15
B
n
19
16
B
n
20
17
B
n
21
18
B
n
22
19
B
ARG
20
n
23
ARG
20
B
ILE
21
n
24
ILE
21
B
LYS
22
n
25
LYS
22
B
LYS
23
n
26
LYS
23
B
ILE
24
n
27
ILE
24
B
SER
25
n
28
SER
25
B
ILE
26
n
29
ILE
26
B
GLU
27
n
30
GLU
27
B
GLY
28
n
31
GLY
28
B
ASN
29
n
32
ASN
29
B
ILE
30
n
33
ILE
30
B
ALA
31
n
34
ALA
31
B
ALA
32
n
35
ALA
32
B
GLY
33
n
36
GLY
33
B
LYS
34
n
37
LYS
34
B
SER
35
n
38
SER
35
B
THR
36
n
39
THR
36
B
PHE
37
n
40
PHE
37
B
VAL
38
n
41
VAL
38
B
ASN
39
n
42
ASN
39
B
ILE
40
n
43
ILE
40
B
LEU
41
n
44
LEU
41
B
LYS
42
n
45
LYS
42
B
GLN
43
n
46
GLN
43
B
LEU
44
n
47
LEU
44
B
CYS
45
n
48
CYS
45
B
ALA
46
n
49
GLU
46
B
ASP
47
n
50
ASP
47
B
TRP
48
n
51
TRP
48
B
GLU
49
n
52
GLU
49
B
VAL
50
n
53
VAL
50
B
VAL
51
n
54
VAL
51
B
PRO
52
n
55
PRO
52
B
GLU
53
n
56
GLU
53
B
PRO
54
n
57
PRO
54
B
VAL
55
n
58
VAL
55
B
ALA
56
n
59
ALA
56
B
ARG
57
n
60
ARG
57
B
TRP
58
n
61
TRP
58
B
CYS
59
n
62
CYS
59
B
ASN
60
n
63
ASN
60
B
VAL
61
n
64
VAL
61
B
GLN
62
n
65
GLN
62
B
SER
63
n
66
SER
63
B
THR
64
n
67
THR
64
B
n
68
65
B
n
69
66
B
n
70
67
B
n
71
68
B
n
72
69
B
n
73
70
B
n
74
71
B
n
75
72
B
n
76
73
B
n
77
74
B
n
78
75
B
n
79
76
B
ASN
77
n
80
ASN
77
B
GLY
78
n
81
GLY
78
B
GLY
79
n
82
GLY
79
B
ASN
80
n
83
ASN
80
B
VAL
81
n
84
VAL
81
B
LEU
82
n
85
LEU
82
B
GLN
83
n
86
GLN
83
B
MET
84
n
87
MET
84
B
MET
85
n
88
MET
85
B
TYR
86
n
89
TYR
86
B
GLU
87
n
90
GLU
87
B
LYS
88
n
91
LYS
88
B
PRO
89
n
92
PRO
89
B
GLU
90
n
93
GLU
90
B
ARG
91
n
94
ARG
91
B
TRP
92
n
95
TRP
92
B
SER
93
n
96
SER
93
B
PHE
94
n
97
PHE
94
B
THR
95
n
98
THR
95
B
PHE
96
n
99
PHE
96
B
GLN
97
n
100
GLN
97
B
THR
98
n
101
THR
98
B
TYR
99
n
102
TYR
99
B
ALA
100
n
103
ALA
100
B
CYS
101
n
104
CYS
101
B
LEU
102
n
105
LEU
102
B
SER
103
n
106
SER
103
B
ARG
104
n
107
ARG
104
B
ILE
105
n
108
ILE
105
B
ARG
106
n
109
ARG
106
B
ALA
107
n
110
ALA
107
B
GLN
108
n
111
GLN
108
B
LEU
109
n
112
LEU
109
B
ALA
110
n
113
ALA
110
B
SER
111
n
114
SER
111
B
LEU
112
n
115
LEU
112
B
ASN
113
n
116
ASN
113
B
GLY
114
n
117
GLY
114
B
LYS
115
n
118
LYS
115
B
LEU
116
n
119
LEU
116
B
LYS
117
n
120
LYS
117
B
ASP
118
n
121
ASP
118
B
ALA
119
n
122
ALA
119
B
GLU
120
n
123
GLU
120
B
ALA
121
n
124
LYS
121
B
PRO
122
n
125
PRO
122
B
VAL
123
n
126
VAL
123
B
LEU
124
n
127
LEU
124
B
PHE
125
n
128
PHE
125
B
PHE
126
n
129
PHE
126
B
GLU
127
n
130
GLU
127
B
ARG
128
n
131
ARG
128
B
SER
129
n
132
SER
129
B
VAL
130
n
133
VAL
130
B
TYR
131
n
134
TYR
131
B
SER
132
n
135
SER
132
B
ASP
133
n
136
ASP
133
B
ARG
134
n
137
ARG
134
B
TYR
135
n
138
TYR
135
B
ILE
136
n
139
ILE
136
B
PHE
137
n
140
PHE
137
B
ALA
138
n
141
ALA
138
B
SER
139
n
142
SER
139
B
ASN
140
n
143
ASN
140
B
LEU
141
n
144
LEU
141
B
TYR
142
n
145
TYR
142
B
GLU
143
n
146
GLU
143
B
SER
144
n
147
SER
144
B
GLU
145
n
148
GLU
145
B
CYS
146
n
149
CYS
146
B
MET
147
n
150
MET
147
B
ASN
148
n
151
ASN
148
B
GLU
149
n
152
GLU
149
B
THR
150
n
153
THR
150
B
GLU
151
n
154
GLU
151
B
TRP
152
n
155
TRP
152
B
THR
153
n
156
THR
153
B
ILE
154
n
157
ILE
154
B
TYR
155
n
158
TYR
155
B
GLN
156
n
159
GLN
156
B
ASP
157
n
160
ASP
157
B
TRP
158
n
161
TRP
158
B
HIS
159
n
162
HIS
159
B
ASP
160
n
163
ASP
160
B
TRP
161
n
164
TRP
161
B
MET
162
n
165
MET
162
B
ASN
163
n
166
ASN
163
B
ASN
164
n
167
ASN
164
B
GLN
165
n
168
GLN
165
B
PHE
166
n
169
PHE
166
B
GLY
167
n
170
GLY
167
B
GLN
168
n
171
GLN
168
B
SER
169
n
172
SER
169
B
LEU
170
n
173
LEU
170
B
GLU
171
n
174
GLU
171
B
LEU
172
n
175
LEU
172
B
ASP
173
n
176
ASP
173
B
GLY
174
n
177
GLY
174
B
ILE
175
n
178
ILE
175
B
ILE
176
n
179
ILE
176
B
TYR
177
n
180
TYR
177
B
LEU
178
n
181
LEU
178
B
GLN
179
n
182
GLN
179
B
ALA
180
n
183
ALA
180
B
THR
181
n
184
THR
181
B
PRO
182
n
185
PRO
182
B
GLU
183
n
186
GLU
183
B
THR
184
n
187
THR
184
B
CYS
185
n
188
CYS
185
B
LEU
186
n
189
LEU
186
B
HIS
187
n
190
HIS
187
B
ARG
188
n
191
ARG
188
B
ILE
189
n
192
ILE
189
B
TYR
190
n
193
TYR
190
B
LEU
191
n
194
LEU
191
B
ARG
192
n
195
ARG
192
B
GLY
193
n
196
GLY
193
B
ARG
194
n
197
ARG
194
B
ASN
195
n
198
ASN
195
B
GLU
196
n
199
GLU
196
B
GLU
197
n
200
GLU
197
B
GLN
198
n
201
GLN
198
B
GLY
199
n
202
GLY
199
B
ILE
200
n
203
ILE
200
B
PRO
201
n
204
PRO
201
B
LEU
202
n
205
LEU
202
B
GLU
203
n
206
GLU
203
B
TYR
204
n
207
TYR
204
B
LEU
205
n
208
LEU
205
B
GLU
206
n
209
GLU
206
B
LYS
207
n
210
LYS
207
B
LEU
208
n
211
LEU
208
B
HIS
209
n
212
HIS
209
B
TYR
210
n
213
TYR
210
B
LYS
211
n
214
LYS
211
B
HIS
212
n
215
HIS
212
B
GLU
213
n
216
GLU
213
B
SER
214
n
217
SER
214
B
TRP
215
n
218
TRP
215
B
LEU
216
n
219
LEU
216
B
LEU
217
n
220
LEU
217
B
HIS
218
n
221
HIS
218
B
ARG
219
n
222
ARG
219
B
THR
220
n
223
THR
220
B
LEU
221
n
224
LEU
221
B
ALA
222
n
225
LYS
222
B
THR
223
n
226
THR
223
B
ASN
224
n
227
ASN
224
B
PHE
225
n
228
PHE
225
B
ASP
226
n
229
ASP
226
B
TYR
227
n
230
TYR
227
B
LEU
228
n
231
LEU
228
B
GLN
229
n
232
GLN
229
B
GLU
230
n
233
GLU
230
B
VAL
231
n
234
VAL
231
B
PRO
232
n
235
PRO
232
B
ILE
233
n
236
ILE
233
B
LEU
234
n
237
LEU
234
B
THR
235
n
238
THR
235
B
LEU
236
n
239
LEU
236
B
ASP
237
n
240
ASP
237
B
VAL
238
n
241
VAL
238
B
ASN
239
n
242
ASN
239
B
GLU
240
n
243
GLU
240
B
ASP
241
n
244
ASP
241
B
PHE
242
n
245
PHE
242
B
LYS
243
n
246
LYS
243
B
ASP
244
n
247
ASP
244
B
LYS
245
n
248
LYS
245
B
TYR
246
n
249
TYR
246
B
GLU
247
n
250
GLU
247
B
SER
248
n
251
SER
248
B
LEU
249
n
252
LEU
249
B
VAL
250
n
253
VAL
250
B
GLU
251
n
254
GLU
251
B
LYS
252
n
255
LYS
252
B
VAL
253
n
256
VAL
253
B
LYS
254
n
257
LYS
254
B
GLU
255
n
258
GLU
255
B
PHE
256
n
259
PHE
256
B
LEU
257
n
260
LEU
257
B
SER
258
n
261
SER
258
B
THR
259
n
262
THR
259
B
LEU
260
n
263
LEU
260
B
author_and_software_defined_assembly
PISA,PQS
2
dimeric
5190
-38
20560
B
SER
35
A
OG
SER
38
1_555
B
MG
401
B
MG
MG
1_555
B
GLU
127
A
OE1
GLU
130
1_555
89.9
B
SER
35
A
OG
SER
38
1_555
B
MG
401
B
MG
MG
1_555
B
ADP
301
D
O2B
ADP
1_555
91.6
B
GLU
127
A
OE1
GLU
130
1_555
B
MG
401
B
MG
MG
1_555
B
ADP
301
D
O2B
ADP
1_555
96.2
B
SER
35
A
OG
SER
38
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
575
E
O
HOH
1_555
85.1
B
GLU
127
A
OE1
GLU
130
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
575
E
O
HOH
1_555
87.1
B
ADP
301
D
O2B
ADP
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
575
E
O
HOH
1_555
175.3
B
SER
35
A
OG
SER
38
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
576
E
O
HOH
1_555
84.8
B
GLU
127
A
OE1
GLU
130
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
576
E
O
HOH
1_555
172.3
B
ADP
301
D
O2B
ADP
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
576
E
O
HOH
1_555
89.5
B
HOH
575
E
O
HOH
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
576
E
O
HOH
1_555
86.9
B
SER
35
A
OG
SER
38
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
577
E
O
HOH
1_555
175.1
B
GLU
127
A
OE1
GLU
130
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
577
E
O
HOH
1_555
91.9
B
ADP
301
D
O2B
ADP
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
577
E
O
HOH
1_555
92.7
B
HOH
575
E
O
HOH
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
577
E
O
HOH
1_555
90.5
B
HOH
576
E
O
HOH
1_555
B
MG
401
B
MG
MG
1_555
B
HOH
577
E
O
HOH
1_555
93.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
80.7200000000
80.7200000000
47.1400000000
B
N
VAL
51
A
N
VAL
54
B
O
PHE
125
A
O
PHE
128
B
O
PHE
126
A
O
PHE
129
B
N
ILE
26
A
N
ILE
29
B
N
GLU
27
A
N
GLU
30
B
O
LEU
178
A
O
LEU
181
B
N
TYR
177
A
N
TYR
180
B
O
LEU
234
A
O
LEU
237
1
B
CG
GLU
46
A
CG
GLU
49
1
Y
1
B
CD
GLU
46
A
CD
GLU
49
1
Y
1
B
OE1
GLU
46
A
OE1
GLU
49
1
Y
1
B
OE2
GLU
46
A
OE2
GLU
49
1
Y
1
B
CG
LYS
121
A
CG
LYS
124
1
Y
1
B
CD
LYS
121
A
CD
LYS
124
1
Y
1
B
CE
LYS
121
A
CE
LYS
124
1
Y
1
B
NZ
LYS
121
A
NZ
LYS
124
1
Y
1
B
CG
LYS
222
A
CG
LYS
225
1
Y
1
B
CD
LYS
222
A
CD
LYS
225
1
Y
1
B
CE
LYS
222
A
CE
LYS
225
1
Y
1
B
NZ
LYS
222
A
NZ
LYS
225
1
Y
1
B
GLY
-2
A
GLY
1
1
Y
1
B
SER
-1
A
SER
2
1
Y
1
B
HIS
0
A
HIS
3
1
Y
1
B
MET
1
A
MET
4
1
Y
1
B
ALA
2
A
ALA
5
1
Y
1
B
THR
3
A
THR
6
1
Y
1
B
PRO
4
A
PRO
7
1
Y
1
B
PRO
5
A
PRO
8
1
Y
1
B
LYS
6
A
LYS
9
1
Y
1
B
ARG
7
A
ARG
10
1
Y
1
B
SER
8
A
SER
11
1
Y
1
B
CYS
9
A
CYS
12
1
Y
1
B
PRO
10
A
PRO
13
1
Y
1
B
SER
11
A
SER
14
1
Y
1
B
PHE
12
A
PHE
15
1
Y
1
B
SER
13
A
SER
16
1
Y
1
B
ALA
14
A
ALA
17
1
Y
1
B
SER
15
A
SER
18
1
Y
1
B
SER
16
A
SER
19
1
Y
1
B
GLU
17
A
GLU
20
1
Y
1
B
GLY
18
A
GLY
21
1
Y
1
B
THR
19
A
THR
22
1
Y
1
B
GLN
65
A
GLN
68
1
Y
1
B
ASP
66
A
ASP
69
1
Y
1
B
GLU
67
A
GLU
70
1
Y
1
B
PHE
68
A
PHE
71
1
Y
1
B
GLU
69
A
GLU
72
1
Y
1
B
GLU
70
A
GLU
73
1
Y
1
B
LEU
71
A
LEU
74
1
Y
1
B
THR
72
A
THR
75
1
Y
1
B
MET
73
A
MET
76
1
Y
1
B
SER
74
A
SER
77
1
Y
1
B
GLN
75
A
GLN
78
1
Y
1
B
LYS
76
A
LYS
79
1
Y
1
B
B
O
O
HOH
HOH
518
573
2.08
1
6.41
0.90
118.30
124.71
B
B
B
CB
CG
OD2
ASP
ASP
ASP
118
118
118
N
1
5.46
0.90
118.30
123.76
B
B
B
CB
CG
OD2
ASP
ASP
ASP
173
173
173
N
1
5.94
0.90
118.30
124.24
B
B
B
CB
CG
OD2
ASP
ASP
ASP
237
237
237
N
1
5.66
0.90
118.30
123.96
B
B
B
CB
CG
OD2
ASP
ASP
ASP
244
244
244
N
1
B
ASN
60
-154.20
86.61
1
B
LYS
88
-152.25
73.18
1
B
ARG
128
64.82
171.83
1
B
ILE
136
-102.18
-67.62
25.373
1.08
0.00
0.00
1.08
0.00
-2.16
0.968
0.959
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.19694
0.17298
0.1754
1.60
20.00
4127
37175
10.0
99.04
1.381
0.048
RANDOM
1
THROUGHOUT
0
MAD
0.078
0.078
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.60
20.00
176
2123
45
0
1902
0.018
0.021
1995
0.002
0.020
1730
1.770
1.966
2710
0.929
3.000
4037
5.204
5.000
227
0.109
0.200
291
0.011
0.020
2177
0.013
0.020
413
0.217
0.200
368
0.245
0.200
1846
0.083
0.200
1012
0.158
0.200
99
0.075
0.200
4
0.309
0.200
40
0.152
0.200
15
1.151
1.500
1142
2.088
2.000
1846
2.854
3.000
853
4.641
4.500
864
0.236
0.234
1.641
287
2722
20
25.0
1.6
30.0
1P5Z
41303
0.052
1
23.1
11.8
1.6
1.7
4.9
0.511
1
refinement
REFMAC
5.1.24
data scaling
XDS
phasing
SOLVE
Structure of human dCK complexed with cytarabine and ADP-MG
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
B
GLY
33
A
GLY
36
HELX_P
B
ASN
39
A
ASN
42
1
1
7
B
ILE
40
A
ILE
43
HELX_P
B
CYS
45
A
CYS
48
5
2
6
B
PRO
54
A
PRO
57
HELX_P
B
CYS
59
A
CYS
62
1
3
6
B
ASN
80
A
ASN
83
HELX_P
B
LYS
88
A
LYS
91
1
4
9
B
LYS
88
A
LYS
91
HELX_P
B
ASN
113
A
ASN
116
1
5
26
B
GLY
114
A
GLY
117
HELX_P
B
ALA
119
A
ALA
122
5
6
6
B
SER
129
A
SER
132
HELX_P
B
ILE
136
A
ILE
139
1
7
8
B
ILE
136
A
ILE
139
HELX_P
B
SER
144
A
SER
147
1
8
9
B
ASN
148
A
ASN
151
HELX_P
B
GLU
171
A
GLU
174
1
9
24
B
THR
181
A
THR
184
HELX_P
B
GLY
193
A
GLY
196
1
10
13
B
ARG
194
A
ARG
197
HELX_P
B
GLN
198
A
GLN
201
5
11
5
B
PRO
201
A
PRO
204
HELX_P
B
LEU
217
A
LEU
220
1
12
17
B
PHE
225
A
PHE
228
HELX_P
B
VAL
231
A
VAL
234
5
13
7
B
ASP
241
A
ASP
244
HELX_P
B
THR
259
A
THR
262
1
14
19
metalc
2.130
B
SER
35
A
OG
SER
38
1_555
B
MG
401
B
MG
MG
1_555
metalc
2.116
B
GLU
127
A
OE1
GLU
130
1_555
B
MG
401
B
MG
MG
1_555
metalc
2.104
B
ADP
301
D
O2B
ADP
1_555
B
MG
401
B
MG
MG
1_555
metalc
2.135
B
MG
401
B
MG
MG
1_555
B
HOH
575
E
O
HOH
1_555
metalc
2.118
B
MG
401
B
MG
MG
1_555
B
HOH
576
E
O
HOH
1_555
metalc
2.027
B
MG
401
B
MG
MG
1_555
B
HOH
577
E
O
HOH
1_555
TRANSFERASE
nucleoside kinase, P-loop, araC, cytarabine, TRANSFERASE
DCK_HUMAN
UNP
1
1
P27707
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN
VLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHD
WMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE
DFKDKYESLVEKVKEFLSTL
1
260
1P5Z
1
260
P27707
B
1
4
263
1
cloning artifact
GLY
-2
1P5Z
B
P27707
UNP
1
1
cloning artifact
SER
-1
1P5Z
B
P27707
UNP
2
1
cloning artifact
HIS
0
1P5Z
B
P27707
UNP
3
5
parallel
parallel
parallel
parallel
B
TRP
48
A
TRP
51
B
VAL
51
A
VAL
54
B
VAL
123
A
VAL
126
B
GLU
127
A
GLU
130
B
LYS
22
A
LYS
25
B
GLU
27
A
GLU
30
B
GLY
174
A
GLY
177
B
GLN
179
A
GLN
182
B
ILE
233
A
ILE
236
B
ASP
237
A
ASP
240
BINDING SITE FOR RESIDUE MG B 401
B
MG
401
Software
6
BINDING SITE FOR RESIDUE AR3 B 304
B
AR3
304
Software
13
BINDING SITE FOR RESIDUE ADP B 301
B
ADP
301
Software
25
B
SER
35
A
SER
38
6
1_555
B
GLU
127
A
GLU
130
6
1_555
B
ADP
301
D
ADP
6
1_555
B
HOH
575
E
HOH
6
1_555
B
HOH
576
E
HOH
6
1_555
B
HOH
577
E
HOH
6
1_555
B
ILE
30
A
ILE
33
13
1_555
B
GLU
53
A
GLU
56
13
1_555
B
TRP
58
A
TRP
61
13
1_555
B
MET
85
A
MET
88
13
1_555
B
TYR
86
A
TYR
89
13
1_555
B
PHE
96
A
PHE
99
13
1_555
B
GLN
97
A
GLN
100
13
1_555
B
ARG
128
A
ARG
131
13
1_555
B
ASP
133
A
ASP
136
13
1_555
B
PHE
137
A
PHE
140
13
1_555
B
GLU
197
A
GLU
200
13
1_555
B
HOH
414
E
HOH
13
1_555
B
HOH
416
E
HOH
13
1_555
B
ALA
31
A
ALA
34
25
1_555
B
ALA
32
A
ALA
35
25
1_555
B
GLY
33
A
GLY
36
25
1_555
B
LYS
34
A
LYS
37
25
1_555
B
SER
35
A
SER
38
25
1_555
B
THR
36
A
THR
39
25
1_555
B
GLU
127
A
GLU
130
25
1_555
B
ARG
188
A
ARG
191
25
1_555
B
ARG
192
A
ARG
195
25
1_555
B
TYR
210
A
TYR
213
25
4_565
B
HIS
218
A
HIS
221
25
4_565
B
VAL
238
A
VAL
241
25
1_555
B
GLU
240
A
GLU
243
25
1_555
B
ASP
241
A
ASP
244
25
1_555
B
PHE
242
A
PHE
245
25
1_555
B
MG
401
B
MG
25
1_555
B
HOH
418
E
HOH
25
1_555
B
HOH
420
E
HOH
25
1_555
B
HOH
422
E
HOH
25
1_555
B
HOH
438
E
HOH
25
1_555
B
HOH
454
E
HOH
25
1_555
B
HOH
514
E
HOH
25
1_555
B
HOH
550
E
HOH
25
4_565
B
HOH
576
E
HOH
25
1_555
B
HOH
577
E
HOH
25
1_555
96
P 43 21 2