0.012500
0.000000
0.000000
0.000000
0.012500
0.000000
0.000000
0.000000
0.010644
0.00000
0.00000
0.00000
Sabini, E.
Ort, S.
Monnerjahn, C.
Konrad, M.
Lavie, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
80.001
80.001
93.946
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H13 N3 O4
227.217
2'-DEOXYCYTIDINE
DNA OH 5 prime terminus
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
N
C
N
132
N
N
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
N
N
138
R
C
N
139
N
C
N
140
S
C
N
141
R
C
N
142
N
O
N
143
N
O
N
144
N
C
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
O
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
N
C
Y
213
N
C
Y
214
N
N
Y
215
N
C
Y
216
N
C
Y
217
N
N
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
S
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
N
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
C
N
307
N
S
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
R
C
N
380
N
O
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
N
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
N
430
N
O
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
C
N
449
N
C
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
Y
214
N
sing
Y
215
N
doub
Y
216
N
doub
N
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
Y
322
N
doub
Y
323
N
sing
Y
324
N
sing
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
Y
419
N
doub
Y
420
N
sing
Y
421
N
sing
N
422
N
sing
Y
423
N
doub
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
10
513
519
10.1038/nsb942
12808445
Structure of human dCK suggests strategies to improve anticancer and antiviral therapy
2003
10.2210/pdb1p61/pdb
pdb_00001p61
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
CCD
2001-03-21
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.9552
1.0
14-BM-D
APS
0.9552
SYNCHROTRON
APS BEAMLINE 14-BM-D
30834.779
Deoxycytidine kinase
2.7.1.74
1
man
polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
227.217
2'-DEOXYCYTIDINE
1
syn
non-polymer
18.015
water
131
nat
water
dCK
no
no
GSHMATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKN
GGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQD
WHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLD
VNEDFKDKYESLVEKVKEFLSTL
GSHMATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKN
GGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQD
WHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLD
VNEDFKDKYESLVEKVKEFLSTL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
DCK
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
pET14b
1
2.44
49.52
VAPOR DIFFUSION, SITTING DROP
7.5
0.95-1.0M citrate trisodium dihydrate, 100mM Hepes, 5mM deoxycytidine, 5mM ADP, 5mM MgCl2, 5mM DTT, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-07-01
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_chem_comp.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
COMPLEXED WITH CYTARABINE
COMPLEXED WITH 2'-DEOXYCYTIDINE AND ADP
COMPLEXED WITH GEMCITABINE
RCSB
Y
RCSB
2003-04-28
REL
REL
ADP
ADENOSINE-5'-DIPHOSPHATE
DCZ
2'-DEOXYCYTIDINE
HOH
water
ADP
301
2
ADP
ADP
301
B
DCY
302
3
DCZ
DCZ
302
B
HOH
1
4
HOH
HOH
303
B
HOH
2
4
HOH
HOH
304
B
HOH
3
4
HOH
HOH
305
B
HOH
4
4
HOH
HOH
306
B
HOH
5
4
HOH
HOH
307
B
HOH
6
4
HOH
HOH
308
B
HOH
7
4
HOH
HOH
309
B
HOH
8
4
HOH
HOH
310
B
HOH
9
4
HOH
HOH
311
B
HOH
11
4
HOH
HOH
312
B
HOH
12
4
HOH
HOH
313
B
HOH
13
4
HOH
HOH
314
B
HOH
14
4
HOH
HOH
315
B
HOH
15
4
HOH
HOH
316
B
HOH
16
4
HOH
HOH
317
B
HOH
17
4
HOH
HOH
318
B
HOH
18
4
HOH
HOH
319
B
HOH
19
4
HOH
HOH
320
B
HOH
20
4
HOH
HOH
321
B
HOH
21
4
HOH
HOH
322
B
HOH
23
4
HOH
HOH
323
B
HOH
25
4
HOH
HOH
324
B
HOH
26
4
HOH
HOH
325
B
HOH
27
4
HOH
HOH
326
B
HOH
28
4
HOH
HOH
327
B
HOH
31
4
HOH
HOH
328
B
HOH
32
4
HOH
HOH
329
B
HOH
33
4
HOH
HOH
330
B
HOH
35
4
HOH
HOH
331
B
HOH
37
4
HOH
HOH
332
B
HOH
38
4
HOH
HOH
333
B
HOH
39
4
HOH
HOH
334
B
HOH
40
4
HOH
HOH
335
B
HOH
41
4
HOH
HOH
336
B
HOH
42
4
HOH
HOH
337
B
HOH
43
4
HOH
HOH
338
B
HOH
45
4
HOH
HOH
339
B
HOH
47
4
HOH
HOH
340
B
HOH
49
4
HOH
HOH
341
B
HOH
50
4
HOH
HOH
342
B
HOH
51
4
HOH
HOH
343
B
HOH
52
4
HOH
HOH
344
B
HOH
53
4
HOH
HOH
345
B
HOH
55
4
HOH
HOH
346
B
HOH
56
4
HOH
HOH
347
B
HOH
57
4
HOH
HOH
348
B
HOH
58
4
HOH
HOH
349
B
HOH
59
4
HOH
HOH
350
B
HOH
60
4
HOH
HOH
351
B
HOH
61
4
HOH
HOH
352
B
HOH
62
4
HOH
HOH
353
B
HOH
63
4
HOH
HOH
354
B
HOH
64
4
HOH
HOH
355
B
HOH
65
4
HOH
HOH
356
B
HOH
66
4
HOH
HOH
357
B
HOH
67
4
HOH
HOH
358
B
HOH
68
4
HOH
HOH
359
B
HOH
70
4
HOH
HOH
360
B
HOH
71
4
HOH
HOH
361
B
HOH
72
4
HOH
HOH
362
B
HOH
73
4
HOH
HOH
363
B
HOH
75
4
HOH
HOH
364
B
HOH
78
4
HOH
HOH
365
B
HOH
81
4
HOH
HOH
366
B
HOH
82
4
HOH
HOH
367
B
HOH
83
4
HOH
HOH
368
B
HOH
84
4
HOH
HOH
369
B
HOH
87
4
HOH
HOH
370
B
HOH
88
4
HOH
HOH
371
B
HOH
89
4
HOH
HOH
372
B
HOH
92
4
HOH
HOH
373
B
HOH
95
4
HOH
HOH
374
B
HOH
96
4
HOH
HOH
375
B
HOH
97
4
HOH
HOH
376
B
HOH
98
4
HOH
HOH
377
B
HOH
99
4
HOH
HOH
378
B
HOH
100
4
HOH
HOH
379
B
HOH
102
4
HOH
HOH
380
B
HOH
103
4
HOH
HOH
381
B
HOH
104
4
HOH
HOH
382
B
HOH
105
4
HOH
HOH
383
B
HOH
106
4
HOH
HOH
384
B
HOH
108
4
HOH
HOH
385
B
HOH
109
4
HOH
HOH
386
B
HOH
110
4
HOH
HOH
387
B
HOH
117
4
HOH
HOH
388
B
HOH
120
4
HOH
HOH
389
B
HOH
121
4
HOH
HOH
390
B
HOH
123
4
HOH
HOH
391
B
HOH
124
4
HOH
HOH
392
B
HOH
126
4
HOH
HOH
393
B
HOH
130
4
HOH
HOH
394
B
HOH
131
4
HOH
HOH
395
B
HOH
133
4
HOH
HOH
396
B
HOH
134
4
HOH
HOH
397
B
HOH
135
4
HOH
HOH
398
B
HOH
136
4
HOH
HOH
399
B
HOH
137
4
HOH
HOH
400
B
HOH
141
4
HOH
HOH
401
B
HOH
145
4
HOH
HOH
402
B
HOH
148
4
HOH
HOH
403
B
HOH
150
4
HOH
HOH
404
B
HOH
151
4
HOH
HOH
405
B
HOH
152
4
HOH
HOH
406
B
HOH
153
4
HOH
HOH
407
B
HOH
154
4
HOH
HOH
408
B
HOH
156
4
HOH
HOH
409
B
HOH
157
4
HOH
HOH
410
B
HOH
164
4
HOH
HOH
411
B
HOH
167
4
HOH
HOH
412
B
HOH
170
4
HOH
HOH
413
B
HOH
171
4
HOH
HOH
414
B
HOH
177
4
HOH
HOH
415
B
HOH
178
4
HOH
HOH
416
B
HOH
180
4
HOH
HOH
417
B
HOH
181
4
HOH
HOH
418
B
HOH
182
4
HOH
HOH
419
B
HOH
183
4
HOH
HOH
420
B
HOH
184
4
HOH
HOH
421
B
HOH
185
4
HOH
HOH
422
B
HOH
186
4
HOH
HOH
423
B
HOH
187
4
HOH
HOH
424
B
HOH
188
4
HOH
HOH
425
B
HOH
190
4
HOH
HOH
426
B
HOH
191
4
HOH
HOH
427
B
HOH
193
4
HOH
HOH
428
B
HOH
195
4
HOH
HOH
429
B
HOH
196
4
HOH
HOH
430
B
HOH
198
4
HOH
HOH
431
B
HOH
199
4
HOH
HOH
432
B
HOH
200
4
HOH
HOH
433
B
n
1
-2
B
n
2
-1
B
n
3
0
B
n
4
1
B
n
5
2
B
n
6
3
B
n
7
4
B
n
8
5
B
n
9
6
B
n
10
7
B
n
11
8
B
n
12
9
B
n
13
10
B
n
14
11
B
n
15
12
B
n
16
13
B
n
17
14
B
n
18
15
B
n
19
16
B
n
20
17
B
n
21
18
B
n
22
19
B
ARG
20
n
23
ARG
20
B
ILE
21
n
24
ILE
21
B
LYS
22
n
25
LYS
22
B
LYS
23
n
26
LYS
23
B
ILE
24
n
27
ILE
24
B
SER
25
n
28
SER
25
B
ILE
26
n
29
ILE
26
B
GLU
27
n
30
GLU
27
B
GLY
28
n
31
GLY
28
B
ASN
29
n
32
ASN
29
B
ILE
30
n
33
ILE
30
B
ALA
31
n
34
ALA
31
B
ALA
32
n
35
ALA
32
B
GLY
33
n
36
GLY
33
B
LYS
34
n
37
LYS
34
B
SER
35
n
38
SER
35
B
THR
36
n
39
THR
36
B
PHE
37
n
40
PHE
37
B
VAL
38
n
41
VAL
38
B
ASN
39
n
42
ASN
39
B
ILE
40
n
43
ILE
40
B
LEU
41
n
44
LEU
41
B
LYS
42
n
45
LYS
42
B
GLN
43
n
46
GLN
43
B
LEU
44
n
47
LEU
44
B
CYS
45
n
48
CYS
45
B
ALA
46
n
49
GLU
46
B
ASP
47
n
50
ASP
47
B
TRP
48
n
51
TRP
48
B
GLU
49
n
52
GLU
49
B
VAL
50
n
53
VAL
50
B
VAL
51
n
54
VAL
51
B
PRO
52
n
55
PRO
52
B
GLU
53
n
56
GLU
53
B
PRO
54
n
57
PRO
54
B
VAL
55
n
58
VAL
55
B
ALA
56
n
59
ALA
56
B
ARG
57
n
60
ARG
57
B
TRP
58
n
61
TRP
58
B
CYS
59
n
62
CYS
59
B
ASN
60
n
63
ASN
60
B
VAL
61
n
64
VAL
61
B
GLN
62
n
65
GLN
62
B
SER
63
n
66
SER
63
B
ALA
64
n
67
THR
64
B
n
68
65
B
n
69
66
B
n
70
67
B
n
71
68
B
n
72
69
B
n
73
70
B
n
74
71
B
n
75
72
B
n
76
73
B
n
77
74
B
n
78
75
B
n
79
76
B
ASN
77
n
80
ASN
77
B
GLY
78
n
81
GLY
78
B
GLY
79
n
82
GLY
79
B
ASN
80
n
83
ASN
80
B
VAL
81
n
84
VAL
81
B
LEU
82
n
85
LEU
82
B
GLN
83
n
86
GLN
83
B
MET
84
n
87
MET
84
B
MET
85
n
88
MET
85
B
TYR
86
n
89
TYR
86
B
ALA
87
n
90
GLU
87
B
LYS
88
n
91
LYS
88
B
PRO
89
n
92
PRO
89
B
GLU
90
n
93
GLU
90
B
ARG
91
n
94
ARG
91
B
TRP
92
n
95
TRP
92
B
SER
93
n
96
SER
93
B
PHE
94
n
97
PHE
94
B
THR
95
n
98
THR
95
B
PHE
96
n
99
PHE
96
B
GLN
97
n
100
GLN
97
B
THR
98
n
101
THR
98
B
TYR
99
n
102
TYR
99
B
ALA
100
n
103
ALA
100
B
CYS
101
n
104
CYS
101
B
LEU
102
n
105
LEU
102
B
SER
103
n
106
SER
103
B
ARG
104
n
107
ARG
104
B
ILE
105
n
108
ILE
105
B
ARG
106
n
109
ARG
106
B
ALA
107
n
110
ALA
107
B
GLN
108
n
111
GLN
108
B
LEU
109
n
112
LEU
109
B
ALA
110
n
113
ALA
110
B
SER
111
n
114
SER
111
B
LEU
112
n
115
LEU
112
B
ALA
113
n
116
ASN
113
B
GLY
114
n
117
GLY
114
B
ALA
115
n
118
LYS
115
B
LEU
116
n
119
LEU
116
B
ALA
117
n
120
LYS
117
B
ALA
118
n
121
ASP
118
B
ALA
119
n
122
ALA
119
B
ALA
120
n
123
GLU
120
B
ALA
121
n
124
LYS
121
B
PRO
122
n
125
PRO
122
B
VAL
123
n
126
VAL
123
B
LEU
124
n
127
LEU
124
B
PHE
125
n
128
PHE
125
B
PHE
126
n
129
PHE
126
B
GLU
127
n
130
GLU
127
B
ARG
128
n
131
ARG
128
B
SER
129
n
132
SER
129
B
VAL
130
n
133
VAL
130
B
TYR
131
n
134
TYR
131
B
SER
132
n
135
SER
132
B
ASP
133
n
136
ASP
133
B
ARG
134
n
137
ARG
134
B
TYR
135
n
138
TYR
135
B
ILE
136
n
139
ILE
136
B
PHE
137
n
140
PHE
137
B
ALA
138
n
141
ALA
138
B
SER
139
n
142
SER
139
B
ASN
140
n
143
ASN
140
B
LEU
141
n
144
LEU
141
B
TYR
142
n
145
TYR
142
B
GLU
143
n
146
GLU
143
B
SER
144
n
147
SER
144
B
GLU
145
n
148
GLU
145
B
CYS
146
n
149
CYS
146
B
MET
147
n
150
MET
147
B
ASN
148
n
151
ASN
148
B
GLU
149
n
152
GLU
149
B
THR
150
n
153
THR
150
B
GLU
151
n
154
GLU
151
B
TRP
152
n
155
TRP
152
B
THR
153
n
156
THR
153
B
ILE
154
n
157
ILE
154
B
TYR
155
n
158
TYR
155
B
GLN
156
n
159
GLN
156
B
ASP
157
n
160
ASP
157
B
TRP
158
n
161
TRP
158
B
HIS
159
n
162
HIS
159
B
ASP
160
n
163
ASP
160
B
TRP
161
n
164
TRP
161
B
MET
162
n
165
MET
162
B
ASN
163
n
166
ASN
163
B
ASN
164
n
167
ASN
164
B
GLN
165
n
168
GLN
165
B
PHE
166
n
169
PHE
166
B
GLY
167
n
170
GLY
167
B
GLN
168
n
171
GLN
168
B
SER
169
n
172
SER
169
B
LEU
170
n
173
LEU
170
B
GLU
171
n
174
GLU
171
B
LEU
172
n
175
LEU
172
B
ASP
173
n
176
ASP
173
B
GLY
174
n
177
GLY
174
B
ILE
175
n
178
ILE
175
B
ILE
176
n
179
ILE
176
B
TYR
177
n
180
TYR
177
B
LEU
178
n
181
LEU
178
B
GLN
179
n
182
GLN
179
B
ALA
180
n
183
ALA
180
B
THR
181
n
184
THR
181
B
PRO
182
n
185
PRO
182
B
GLU
183
n
186
GLU
183
B
THR
184
n
187
THR
184
B
CYS
185
n
188
CYS
185
B
LEU
186
n
189
LEU
186
B
HIS
187
n
190
HIS
187
B
ARG
188
n
191
ARG
188
B
ILE
189
n
192
ILE
189
B
TYR
190
n
193
TYR
190
B
LEU
191
n
194
LEU
191
B
ARG
192
n
195
ARG
192
B
GLY
193
n
196
GLY
193
B
ARG
194
n
197
ARG
194
B
ASN
195
n
198
ASN
195
B
GLU
196
n
199
GLU
196
B
GLU
197
n
200
GLU
197
B
GLN
198
n
201
GLN
198
B
GLY
199
n
202
GLY
199
B
ILE
200
n
203
ILE
200
B
PRO
201
n
204
PRO
201
B
LEU
202
n
205
LEU
202
B
GLU
203
n
206
GLU
203
B
TYR
204
n
207
TYR
204
B
LEU
205
n
208
LEU
205
B
GLU
206
n
209
GLU
206
B
LYS
207
n
210
LYS
207
B
LEU
208
n
211
LEU
208
B
HIS
209
n
212
HIS
209
B
TYR
210
n
213
TYR
210
B
LYS
211
n
214
LYS
211
B
HIS
212
n
215
HIS
212
B
GLU
213
n
216
GLU
213
B
SER
214
n
217
SER
214
B
TRP
215
n
218
TRP
215
B
LEU
216
n
219
LEU
216
B
LEU
217
n
220
LEU
217
B
HIS
218
n
221
HIS
218
B
ARG
219
n
222
ARG
219
B
THR
220
n
223
THR
220
B
LEU
221
n
224
LEU
221
B
ALA
222
n
225
LYS
222
B
THR
223
n
226
THR
223
B
ASN
224
n
227
ASN
224
B
PHE
225
n
228
PHE
225
B
ASP
226
n
229
ASP
226
B
TYR
227
n
230
TYR
227
B
LEU
228
n
231
LEU
228
B
GLN
229
n
232
GLN
229
B
GLU
230
n
233
GLU
230
B
VAL
231
n
234
VAL
231
B
PRO
232
n
235
PRO
232
B
ILE
233
n
236
ILE
233
B
LEU
234
n
237
LEU
234
B
THR
235
n
238
THR
235
B
LEU
236
n
239
LEU
236
B
ASP
237
n
240
ASP
237
B
VAL
238
n
241
VAL
238
B
ASN
239
n
242
ASN
239
B
GLU
240
n
243
GLU
240
B
ASP
241
n
244
ASP
241
B
PHE
242
n
245
PHE
242
B
LYS
243
n
246
LYS
243
B
ASP
244
n
247
ASP
244
B
GLY
245
n
248
LYS
245
B
TYR
246
n
249
TYR
246
B
ALA
247
n
250
GLU
247
B
SER
248
n
251
SER
248
B
LEU
249
n
252
LEU
249
B
VAL
250
n
253
VAL
250
B
GLU
251
n
254
GLU
251
B
LYS
252
n
255
LYS
252
B
VAL
253
n
256
VAL
253
B
LYS
254
n
257
LYS
254
B
GLU
255
n
258
GLU
255
B
PHE
256
n
259
PHE
256
B
LEU
257
n
260
LEU
257
B
SER
258
n
261
SER
258
B
THR
259
n
262
THR
259
B
LEU
260
n
263
LEU
260
B
author_and_software_defined_assembly
PISA,PQS
2
dimeric
4840
-19
19840
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
80.0010000000
80.0010000000
46.9730000000
B
N
GLU
49
A
N
GLU
52
B
O
VAL
123
A
O
VAL
126
B
O
LEU
124
A
O
LEU
127
B
N
LYS
22
A
N
LYS
25
B
N
GLU
27
A
N
GLU
30
B
O
ILE
176
A
O
ILE
179
B
N
TYR
177
A
N
TYR
180
B
O
LEU
234
A
O
LEU
237
1
B
HOH
424
D
HOH
1
B
CG
GLU
46
A
CG
GLU
49
1
Y
1
B
CD
GLU
46
A
CD
GLU
49
1
Y
1
B
OE1
GLU
46
A
OE1
GLU
49
1
Y
1
B
OE2
GLU
46
A
OE2
GLU
49
1
Y
1
B
OG1
THR
64
A
OG1
THR
67
1
Y
1
B
CG2
THR
64
A
CG2
THR
67
1
Y
1
B
CG
GLU
87
A
CG
GLU
90
1
Y
1
B
CD
GLU
87
A
CD
GLU
90
1
Y
1
B
OE1
GLU
87
A
OE1
GLU
90
1
Y
1
B
OE2
GLU
87
A
OE2
GLU
90
1
Y
1
B
CG
ASN
113
A
CG
ASN
116
1
Y
1
B
OD1
ASN
113
A
OD1
ASN
116
1
Y
1
B
ND2
ASN
113
A
ND2
ASN
116
1
Y
1
B
CG
LYS
115
A
CG
LYS
118
1
Y
1
B
CD
LYS
115
A
CD
LYS
118
1
Y
1
B
CE
LYS
115
A
CE
LYS
118
1
Y
1
B
NZ
LYS
115
A
NZ
LYS
118
1
Y
1
B
CG
LYS
117
A
CG
LYS
120
1
Y
1
B
CD
LYS
117
A
CD
LYS
120
1
Y
1
B
CE
LYS
117
A
CE
LYS
120
1
Y
1
B
NZ
LYS
117
A
NZ
LYS
120
1
Y
1
B
CG
ASP
118
A
CG
ASP
121
1
Y
1
B
OD1
ASP
118
A
OD1
ASP
121
1
Y
1
B
OD2
ASP
118
A
OD2
ASP
121
1
Y
1
B
CG
GLU
120
A
CG
GLU
123
1
Y
1
B
CD
GLU
120
A
CD
GLU
123
1
Y
1
B
OE1
GLU
120
A
OE1
GLU
123
1
Y
1
B
OE2
GLU
120
A
OE2
GLU
123
1
Y
1
B
CG
LYS
121
A
CG
LYS
124
1
Y
1
B
CD
LYS
121
A
CD
LYS
124
1
Y
1
B
CE
LYS
121
A
CE
LYS
124
1
Y
1
B
NZ
LYS
121
A
NZ
LYS
124
1
Y
1
B
CG
LYS
222
A
CG
LYS
225
1
Y
1
B
CD
LYS
222
A
CD
LYS
225
1
Y
1
B
CE
LYS
222
A
CE
LYS
225
1
Y
1
B
NZ
LYS
222
A
NZ
LYS
225
1
Y
1
B
CB
LYS
245
A
CB
LYS
248
1
Y
1
B
CG
LYS
245
A
CG
LYS
248
1
Y
1
B
CD
LYS
245
A
CD
LYS
248
1
Y
1
B
CE
LYS
245
A
CE
LYS
248
1
Y
1
B
NZ
LYS
245
A
NZ
LYS
248
1
Y
1
B
CG
GLU
247
A
CG
GLU
250
1
Y
1
B
CD
GLU
247
A
CD
GLU
250
1
Y
1
B
OE1
GLU
247
A
OE1
GLU
250
1
Y
1
B
OE2
GLU
247
A
OE2
GLU
250
1
Y
1
B
GLY
-2
A
GLY
1
1
Y
1
B
SER
-1
A
SER
2
1
Y
1
B
HIS
0
A
HIS
3
1
Y
1
B
MET
1
A
MET
4
1
Y
1
B
ALA
2
A
ALA
5
1
Y
1
B
THR
3
A
THR
6
1
Y
1
B
PRO
4
A
PRO
7
1
Y
1
B
PRO
5
A
PRO
8
1
Y
1
B
LYS
6
A
LYS
9
1
Y
1
B
ARG
7
A
ARG
10
1
Y
1
B
SER
8
A
SER
11
1
Y
1
B
CYS
9
A
CYS
12
1
Y
1
B
PRO
10
A
PRO
13
1
Y
1
B
SER
11
A
SER
14
1
Y
1
B
PHE
12
A
PHE
15
1
Y
1
B
SER
13
A
SER
16
1
Y
1
B
ALA
14
A
ALA
17
1
Y
1
B
SER
15
A
SER
18
1
Y
1
B
SER
16
A
SER
19
1
Y
1
B
GLU
17
A
GLU
20
1
Y
1
B
GLY
18
A
GLY
21
1
Y
1
B
THR
19
A
THR
22
1
Y
1
B
GLN
65
A
GLN
68
1
Y
1
B
ASP
66
A
ASP
69
1
Y
1
B
GLU
67
A
GLU
70
1
Y
1
B
PHE
68
A
PHE
71
1
Y
1
B
GLU
69
A
GLU
72
1
Y
1
B
GLU
70
A
GLU
73
1
Y
1
B
LEU
71
A
LEU
74
1
Y
1
B
THR
72
A
THR
75
1
Y
1
B
MET
73
A
MET
76
1
Y
1
B
SER
74
A
SER
77
1
Y
1
B
GLN
75
A
GLN
78
1
Y
1
B
LYS
76
A
LYS
79
1
Y
1
B
B
O
O
HOH
HOH
355
394
1.81
1
B
B
LYS
LEU
115
116
147.69
1
B
B
LEU
LYS
116
117
143.47
1
B
B
LYS
ASP
117
118
-147.80
1
5.73
0.90
118.30
124.03
B
B
B
CB
CG
OD2
ASP
ASP
ASP
173
173
173
N
1
B
LYS
115
34.54
42.58
1
B
LYS
117
-64.26
-155.49
1
B
ASP
118
68.98
-77.47
1
B
ALA
119
53.44
-65.74
1
B
GLU
120
118.10
-76.01
1
B
LYS
121
-112.62
62.57
1
B
ARG
128
61.17
-179.37
1
B
ILE
136
-97.34
-68.48
1
B
GLN
168
50.81
-56.32
39.706
2.17
0.00
0.00
2.17
0.00
-4.34
0.946
0.925
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.27964
0.22158
0.22733
2.21
20
1537
13671
10.1
95.79
6.278
0.153
RANDOM
1
THROUGHOUT
0
MAD
0.314
0.251
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.21
20
131
2043
43
0
1869
0.021
0.021
1961
0.002
0.020
1713
1.885
1.962
2668
0.915
3.000
3981
7.942
5.000
227
0.097
0.200
288
0.008
0.020
2159
0.007
0.020
414
0.219
0.200
422
0.250
0.200
1948
0.095
0.200
1151
0.194
0.200
98
0.279
0.200
13
0.300
0.200
57
0.395
0.200
7
1.097
1.500
1141
2.000
2.000
1834
2.658
3.000
820
4.250
4.500
834
0.666
0.652
2.266
100
878
20
2.2
30.0
1P61
15208
0.064
1
28.2
2.2
2.3
7.5
0.156
1
refinement
REFMAC
5.1.24
Structure of human dCK complexed with 2'-Deoxycytidine and ADP, P 43 21 2 space group
1
N
N
2
N
N
3
N
N
4
N
N
B
GLY
33
A
GLY
36
HELX_P
B
CYS
45
A
CYS
48
1
1
13
B
PRO
54
A
PRO
57
HELX_P
B
ASN
60
A
ASN
63
1
2
7
B
ASN
80
A
ASN
83
HELX_P
B
LYS
88
A
LYS
91
1
3
9
B
LYS
88
A
LYS
91
HELX_P
B
ASN
113
A
ASN
116
1
4
26
B
SER
129
A
SER
132
HELX_P
B
ILE
136
A
ILE
139
1
5
8
B
ILE
136
A
ILE
139
HELX_P
B
SER
144
A
SER
147
1
6
9
B
ASN
148
A
ASN
151
HELX_P
B
GLY
167
A
GLY
170
1
7
20
B
THR
181
A
THR
184
HELX_P
B
GLY
193
A
GLY
196
1
8
13
B
ARG
194
A
ARG
197
HELX_P
B
GLN
198
A
GLN
201
5
9
5
B
PRO
201
A
PRO
204
HELX_P
B
LEU
217
A
LEU
220
1
10
17
B
PHE
225
A
PHE
228
HELX_P
B
GLU
230
A
GLU
233
5
11
6
B
ASP
241
A
ASP
244
HELX_P
B
THR
259
A
THR
262
1
12
19
TRANSFERASE
nucleoside kinase, P-loop, deoxycytidine, TRANSFERASE
DCK_HUMAN
UNP
1
1
P27707
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN
VLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHD
WMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE
DFKDKYESLVEKVKEFLSTL
1
260
1P61
1
260
P27707
B
1
4
263
1
cloning artifact
GLY
-2
1P61
B
P27707
UNP
1
1
cloning artifact
SER
-1
1P61
B
P27707
UNP
2
1
cloning artifact
HIS
0
1P61
B
P27707
UNP
3
5
parallel
parallel
parallel
parallel
B
TRP
48
A
TRP
51
B
VAL
51
A
VAL
54
B
VAL
123
A
VAL
126
B
GLU
127
A
GLU
130
B
LYS
22
A
LYS
25
B
GLU
27
A
GLU
30
B
GLY
174
A
GLY
177
B
GLN
179
A
GLN
182
B
ILE
233
A
ILE
236
B
ASP
237
A
ASP
240
BINDING SITE FOR RESIDUE ADP B 301
B
ADP
301
Software
21
BINDING SITE FOR RESIDUE DCZ B 302
B
DCZ
302
Software
15
B
ALA
31
A
ALA
34
21
1_555
B
ALA
32
A
ALA
35
21
1_555
B
GLY
33
A
GLY
36
21
1_555
B
LYS
34
A
LYS
37
21
1_555
B
SER
35
A
SER
38
21
1_555
B
THR
36
A
THR
39
21
1_555
B
ARG
188
A
ARG
191
21
1_555
B
ARG
192
A
ARG
195
21
1_555
B
TYR
210
A
TYR
213
21
4_565
B
GLU
213
A
GLU
216
21
4_565
B
HIS
218
A
HIS
221
21
4_565
B
VAL
238
A
VAL
241
21
1_555
B
GLU
240
A
GLU
243
21
1_555
B
ASP
241
A
ASP
244
21
1_555
B
PHE
242
A
PHE
245
21
1_555
B
HOH
310
D
HOH
21
1_555
B
HOH
311
D
HOH
21
1_555
B
HOH
325
D
HOH
21
1_555
B
HOH
326
D
HOH
21
4_565
B
HOH
341
D
HOH
21
4_565
B
HOH
346
D
HOH
21
1_555
B
ILE
30
A
ILE
33
15
1_555
B
GLU
53
A
GLU
56
15
1_555
B
VAL
55
A
VAL
58
15
1_555
B
TRP
58
A
TRP
61
15
1_555
B
LEU
82
A
LEU
85
15
1_555
B
MET
85
A
MET
88
15
1_555
B
TYR
86
A
TYR
89
15
1_555
B
PHE
96
A
PHE
99
15
1_555
B
GLN
97
A
GLN
100
15
1_555
B
ARG
128
A
ARG
131
15
1_555
B
ASP
133
A
ASP
136
15
1_555
B
PHE
137
A
PHE
140
15
1_555
B
GLU
197
A
GLU
200
15
1_555
B
HOH
303
D
HOH
15
1_555
B
HOH
323
D
HOH
15
1_555
96
P 43 21 2