1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wei, Y. Kim, S. Fela, D. Baum, J. Hecht, M.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.Usa PNASA6 0040 0027-8424 100 13270 13273 10.1073/pnas.1835644100 14593201 Solution structure of a de novo protein from a designed combinatorial library. 2003 10.2210/pdb1p68/pdb pdb_00001p68 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 11949.376 De novo designed protein S-824 1 man polymer no no MYGKLNDLLEDLQEVLKNLHKNWHGGKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDELNNHLQGGKH TVHHIEQNIKEIFHHLEELVHR MYGKLNDLLEDLQEVLKNLHKNWHGGKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDELNNHLQGGKH TVHHIEQNIKEIFHHLEELVHR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia Escherichia coli sample 562 Escherichia coli 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET3a database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2003-11-11 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession chemical shift assignment of S-824 RCSB Y RCSB 2003-04-29 REL REL This structure was determined using standard 3D heteronuclear techniques. back calculated data agree with experimental NOESY spectrum 100 15 3D_13C-separated_NOESY 3D_15N-separated_NOESY HNHA 50mM 4.0 1 atm 298 K simulated annealing 7 lowest energy 50mM Acetate buffer 92% H2O, 8% D2O Brunger structure solution CNS 1.1 Brunger refinement CNS 1.1 600 Varian INOVA MET 1 n 1 MET 1 A TYR 2 n 2 TYR 2 A GLY 3 n 3 GLY 3 A LYS 4 n 4 LYS 4 A LEU 5 n 5 LEU 5 A ASN 6 n 6 ASN 6 A ASP 7 n 7 ASP 7 A LEU 8 n 8 LEU 8 A LEU 9 n 9 LEU 9 A GLU 10 n 10 GLU 10 A ASP 11 n 11 ASP 11 A LEU 12 n 12 LEU 12 A GLN 13 n 13 GLN 13 A GLU 14 n 14 GLU 14 A VAL 15 n 15 VAL 15 A LEU 16 n 16 LEU 16 A LYS 17 n 17 LYS 17 A ASN 18 n 18 ASN 18 A LEU 19 n 19 LEU 19 A HIS 20 n 20 HIS 20 A LYS 21 n 21 LYS 21 A ASN 22 n 22 ASN 22 A TRP 23 n 23 TRP 23 A HIS 24 n 24 HIS 24 A GLY 25 n 25 GLY 25 A GLY 26 n 26 GLY 26 A LYS 27 n 27 LYS 27 A ASP 28 n 28 ASP 28 A ASN 29 n 29 ASN 29 A LEU 30 n 30 LEU 30 A HIS 31 n 31 HIS 31 A ASP 32 n 32 ASP 32 A VAL 33 n 33 VAL 33 A ASP 34 n 34 ASP 34 A ASN 35 n 35 ASN 35 A HIS 36 n 36 HIS 36 A LEU 37 n 37 LEU 37 A GLN 38 n 38 GLN 38 A ASN 39 n 39 ASN 39 A VAL 40 n 40 VAL 40 A ILE 41 n 41 ILE 41 A GLU 42 n 42 GLU 42 A ASP 43 n 43 ASP 43 A ILE 44 n 44 ILE 44 A HIS 45 n 45 HIS 45 A ASP 46 n 46 ASP 46 A PHE 47 n 47 PHE 47 A MET 48 n 48 MET 48 A GLN 49 n 49 GLN 49 A GLY 50 n 50 GLY 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A SER 53 n 53 SER 53 A GLY 54 n 54 GLY 54 A GLY 55 n 55 GLY 55 A LYS 56 n 56 LYS 56 A LEU 57 n 57 LEU 57 A GLN 58 n 58 GLN 58 A GLU 59 n 59 GLU 59 A MET 60 n 60 MET 60 A MET 61 n 61 MET 61 A LYS 62 n 62 LYS 62 A GLU 63 n 63 GLU 63 A PHE 64 n 64 PHE 64 A GLN 65 n 65 GLN 65 A GLN 66 n 66 GLN 66 A VAL 67 n 67 VAL 67 A LEU 68 n 68 LEU 68 A ASP 69 n 69 ASP 69 A GLU 70 n 70 GLU 70 A LEU 71 n 71 LEU 71 A ASN 72 n 72 ASN 72 A ASN 73 n 73 ASN 73 A HIS 74 n 74 HIS 74 A LEU 75 n 75 LEU 75 A GLN 76 n 76 GLN 76 A GLY 77 n 77 GLY 77 A GLY 78 n 78 GLY 78 A LYS 79 n 79 LYS 79 A HIS 80 n 80 HIS 80 A THR 81 n 81 THR 81 A VAL 82 n 82 VAL 82 A HIS 83 n 83 HIS 83 A HIS 84 n 84 HIS 84 A ILE 85 n 85 ILE 85 A GLU 86 n 86 GLU 86 A GLN 87 n 87 GLN 87 A ASN 88 n 88 ASN 88 A ILE 89 n 89 ILE 89 A LYS 90 n 90 LYS 90 A GLU 91 n 91 GLU 91 A ILE 92 n 92 ILE 92 A PHE 93 n 93 PHE 93 A HIS 94 n 94 HIS 94 A HIS 95 n 95 HIS 95 A LEU 96 n 96 LEU 96 A GLU 97 n 97 GLU 97 A GLU 98 n 98 GLU 98 A LEU 99 n 99 LEU 99 A VAL 100 n 100 VAL 100 A HIS 101 n 101 HIS 101 A ARG 102 n 102 ARG 102 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H VAL GLU 82 86 1.36 1 A A O H ILE ILE 85 89 1.60 2 A A O H VAL GLU 82 86 1.40 2 A A O H PHE GLU 93 97 1.60 3 A A O H VAL GLU 82 86 1.38 3 A A O H LYS HIS 79 83 1.55 3 A A O H PHE GLU 93 97 1.57 3 A A O H LEU ASN 68 72 1.59 4 A A O H VAL GLU 82 86 1.38 4 A A O H ILE ILE 85 89 1.57 4 A A O H PHE GLU 93 97 1.59 4 A A O H LEU ASP 30 34 1.59 5 A A O H VAL GLU 82 86 1.35 5 A A O H LYS HIS 79 83 1.58 6 A A O H VAL GLU 82 86 1.47 6 A A O H PHE GLU 93 97 1.59 6 A A O H THR ILE 81 85 1.59 6 A A O H LEU TRP 19 23 1.59 7 A A O H VAL GLU 82 86 1.39 7 A A O H ILE ILE 85 89 1.51 7 A A O H PHE GLU 93 97 1.55 7 A A O H LEU ASN 68 72 1.57 8 A A O H VAL GLU 82 86 1.39 8 A A O H LEU HIS 71 74 1.59 9 A A O H VAL GLU 82 86 1.37 9 A A O H LYS HIS 79 83 1.54 9 A A O H PHE GLU 93 97 1.57 10 A A O H VAL GLU 82 86 1.38 11 A A O H VAL GLU 82 86 1.43 11 A A O H ILE ILE 85 89 1.55 11 A A O H PHE GLU 93 97 1.59 12 A A O H VAL GLU 82 86 1.39 12 A A O H PHE GLU 93 97 1.56 12 A A O H LEU ASN 68 72 1.58 13 A A O H VAL GLU 82 86 1.40 13 A A O H LYS HIS 79 83 1.54 13 A A O H ILE MET 44 48 1.57 13 A A O H ILE ILE 85 89 1.60 14 A A O H VAL GLU 82 86 1.42 14 A A O H PHE GLU 93 97 1.55 15 A A O H VAL GLU 82 86 1.51 15 A A O H LEU ASP 30 34 1.57 15 A A O H PHE GLU 93 97 1.58 1 A ASN 22 -152.97 19.93 1 A HIS 24 -178.44 -52.42 1 A HIS 74 -155.38 34.51 1 A LEU 75 -51.23 90.34 1 A GLN 76 -65.64 68.30 1 A THR 81 -69.03 -74.16 2 A TYR 2 -96.96 40.88 2 A ASN 22 -146.50 10.84 2 A HIS 24 -179.13 -51.78 2 A VAL 33 -90.01 -60.25 2 A HIS 74 -154.97 32.31 2 A LEU 75 -52.67 88.31 2 A GLN 76 -67.97 69.70 2 A THR 81 -67.45 -74.41 2 A LEU 99 -96.10 -67.20 3 A HIS 24 179.56 58.67 3 A HIS 74 -153.82 28.72 3 A LEU 75 -49.38 85.30 3 A THR 81 -69.93 -74.23 4 A HIS 24 179.04 47.18 4 A HIS 74 -147.19 26.97 4 A LEU 75 -49.50 91.95 4 A GLN 76 -64.54 68.23 4 A THR 81 -69.69 -74.64 5 A ASN 22 -146.01 12.63 5 A HIS 24 -178.32 -51.18 5 A HIS 74 -156.33 30.08 5 A LEU 75 -50.70 85.25 5 A THR 81 -68.67 -73.26 5 A LEU 99 -100.81 -63.02 5 A HIS 101 -96.59 33.63 6 A HIS 24 -175.97 -52.65 6 A HIS 74 -150.92 36.49 6 A LEU 75 -67.46 85.35 6 A GLN 76 -68.03 65.75 7 A HIS 24 -175.20 -48.66 7 A HIS 74 -152.15 32.71 7 A LEU 75 -54.65 83.28 7 A THR 81 -69.93 -74.40 8 A ASN 22 -145.41 -20.12 8 A HIS 24 -178.86 -53.13 8 A SER 53 -64.59 -168.32 8 A LEU 75 -51.92 92.08 8 A GLN 76 -64.30 69.14 8 A THR 81 -68.02 -74.56 9 A TYR 2 -99.32 54.61 9 A HIS 24 179.39 57.60 9 A HIS 74 -150.90 32.03 9 A LEU 75 -50.27 82.76 9 A THR 81 -69.55 -74.15 9 A HIS 101 -98.33 31.33 10 A HIS 24 -177.90 -52.49 10 A HIS 74 -158.68 35.63 10 A LEU 75 -54.67 88.44 10 A GLN 76 -63.76 69.25 10 A THR 81 -67.49 -72.57 11 A ASN 22 -142.10 10.64 11 A HIS 24 -179.99 -52.12 11 A HIS 74 -154.09 31.92 11 A LEU 75 -50.32 90.27 11 A GLN 76 -66.25 68.85 11 A THR 81 -67.15 -74.36 11 A HIS 101 -94.83 33.57 12 A ASN 22 -148.61 18.59 12 A HIS 24 179.94 52.10 12 A SER 53 -59.89 -175.87 12 A HIS 74 -151.98 27.89 12 A LEU 75 -51.38 89.34 12 A GLN 76 -66.36 68.09 12 A THR 81 -67.97 -73.53 13 A HIS 24 -176.75 -49.38 13 A HIS 74 -151.53 36.34 13 A LEU 75 -52.08 86.55 13 A THR 81 -69.48 -73.34 13 A HIS 101 -96.08 32.99 14 A TYR 2 -103.81 66.76 14 A ASN 22 -153.93 19.25 14 A HIS 24 -177.15 -51.16 14 A SER 53 -85.76 36.51 14 A LEU 71 -75.05 -70.82 14 A HIS 74 -151.96 24.31 14 A LEU 75 -47.63 94.74 14 A THR 81 -68.04 -75.10 15 A TYR 2 -101.09 76.88 15 A LYS 17 -39.14 -39.55 15 A ASN 22 -152.69 10.14 15 A HIS 24 -178.41 -50.64 15 A LEU 71 -76.98 -72.04 15 A HIS 74 -146.41 29.46 15 A LEU 75 -49.93 88.90 Solution structure of S-824, a de novo designed four helix bundle 1 N N A LYS 4 A LYS 4 HELX_P A LYS 21 A LYS 21 1 1 18 A LEU 30 A LEU 30 HELX_P A ASP 46 A ASP 46 1 2 17 A GLY 55 A GLY 55 HELX_P A MET 60 A MET 60 1 3 6 A MET 60 A MET 60 HELX_P A ASN 73 A ASN 73 1 4 14 A GLY 78 A GLY 78 HELX_P A LYS 90 A LYS 90 1 5 13 A GLU 91 A GLU 91 HELX_P A HIS 101 A HIS 101 1 6 11 DE NOVO PROTEIN Protein, four helix bundle, de novo design, DE NOVO PROTEIN 1P68 PDB 1 1P68 1 102 1P68 1 102 1P68 A 1 1 102