1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wei, Y.
Kim, S.
Fela, D.
Baum, J.
Hecht, M.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
100
13270
13273
10.1073/pnas.1835644100
14593201
Solution structure of a de novo protein from a designed combinatorial library.
2003
10.2210/pdb1p68/pdb
pdb_00001p68
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
11949.376
De novo designed protein S-824
1
man
polymer
no
no
MYGKLNDLLEDLQEVLKNLHKNWHGGKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDELNNHLQGGKH
TVHHIEQNIKEIFHHLEELVHR
MYGKLNDLLEDLQEVLKNLHKNWHGGKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDELNNHLQGGKH
TVHHIEQNIKEIFHHLEELVHR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET3a
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2003-11-11
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
chemical shift assignment of S-824
RCSB
Y
RCSB
2003-04-29
REL
REL
This structure was determined using standard 3D heteronuclear techniques.
back calculated data agree with experimental NOESY spectrum
100
15
3D_13C-separated_NOESY
3D_15N-separated_NOESY
HNHA
50mM
4.0
1
atm
298
K
simulated annealing
7
lowest energy
50mM Acetate buffer
92% H2O, 8% D2O
Brunger
structure solution
CNS
1.1
Brunger
refinement
CNS
1.1
600
Varian
INOVA
MET
1
n
1
MET
1
A
TYR
2
n
2
TYR
2
A
GLY
3
n
3
GLY
3
A
LYS
4
n
4
LYS
4
A
LEU
5
n
5
LEU
5
A
ASN
6
n
6
ASN
6
A
ASP
7
n
7
ASP
7
A
LEU
8
n
8
LEU
8
A
LEU
9
n
9
LEU
9
A
GLU
10
n
10
GLU
10
A
ASP
11
n
11
ASP
11
A
LEU
12
n
12
LEU
12
A
GLN
13
n
13
GLN
13
A
GLU
14
n
14
GLU
14
A
VAL
15
n
15
VAL
15
A
LEU
16
n
16
LEU
16
A
LYS
17
n
17
LYS
17
A
ASN
18
n
18
ASN
18
A
LEU
19
n
19
LEU
19
A
HIS
20
n
20
HIS
20
A
LYS
21
n
21
LYS
21
A
ASN
22
n
22
ASN
22
A
TRP
23
n
23
TRP
23
A
HIS
24
n
24
HIS
24
A
GLY
25
n
25
GLY
25
A
GLY
26
n
26
GLY
26
A
LYS
27
n
27
LYS
27
A
ASP
28
n
28
ASP
28
A
ASN
29
n
29
ASN
29
A
LEU
30
n
30
LEU
30
A
HIS
31
n
31
HIS
31
A
ASP
32
n
32
ASP
32
A
VAL
33
n
33
VAL
33
A
ASP
34
n
34
ASP
34
A
ASN
35
n
35
ASN
35
A
HIS
36
n
36
HIS
36
A
LEU
37
n
37
LEU
37
A
GLN
38
n
38
GLN
38
A
ASN
39
n
39
ASN
39
A
VAL
40
n
40
VAL
40
A
ILE
41
n
41
ILE
41
A
GLU
42
n
42
GLU
42
A
ASP
43
n
43
ASP
43
A
ILE
44
n
44
ILE
44
A
HIS
45
n
45
HIS
45
A
ASP
46
n
46
ASP
46
A
PHE
47
n
47
PHE
47
A
MET
48
n
48
MET
48
A
GLN
49
n
49
GLN
49
A
GLY
50
n
50
GLY
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
SER
53
n
53
SER
53
A
GLY
54
n
54
GLY
54
A
GLY
55
n
55
GLY
55
A
LYS
56
n
56
LYS
56
A
LEU
57
n
57
LEU
57
A
GLN
58
n
58
GLN
58
A
GLU
59
n
59
GLU
59
A
MET
60
n
60
MET
60
A
MET
61
n
61
MET
61
A
LYS
62
n
62
LYS
62
A
GLU
63
n
63
GLU
63
A
PHE
64
n
64
PHE
64
A
GLN
65
n
65
GLN
65
A
GLN
66
n
66
GLN
66
A
VAL
67
n
67
VAL
67
A
LEU
68
n
68
LEU
68
A
ASP
69
n
69
ASP
69
A
GLU
70
n
70
GLU
70
A
LEU
71
n
71
LEU
71
A
ASN
72
n
72
ASN
72
A
ASN
73
n
73
ASN
73
A
HIS
74
n
74
HIS
74
A
LEU
75
n
75
LEU
75
A
GLN
76
n
76
GLN
76
A
GLY
77
n
77
GLY
77
A
GLY
78
n
78
GLY
78
A
LYS
79
n
79
LYS
79
A
HIS
80
n
80
HIS
80
A
THR
81
n
81
THR
81
A
VAL
82
n
82
VAL
82
A
HIS
83
n
83
HIS
83
A
HIS
84
n
84
HIS
84
A
ILE
85
n
85
ILE
85
A
GLU
86
n
86
GLU
86
A
GLN
87
n
87
GLN
87
A
ASN
88
n
88
ASN
88
A
ILE
89
n
89
ILE
89
A
LYS
90
n
90
LYS
90
A
GLU
91
n
91
GLU
91
A
ILE
92
n
92
ILE
92
A
PHE
93
n
93
PHE
93
A
HIS
94
n
94
HIS
94
A
HIS
95
n
95
HIS
95
A
LEU
96
n
96
LEU
96
A
GLU
97
n
97
GLU
97
A
GLU
98
n
98
GLU
98
A
LEU
99
n
99
LEU
99
A
VAL
100
n
100
VAL
100
A
HIS
101
n
101
HIS
101
A
ARG
102
n
102
ARG
102
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
VAL
GLU
82
86
1.36
1
A
A
O
H
ILE
ILE
85
89
1.60
2
A
A
O
H
VAL
GLU
82
86
1.40
2
A
A
O
H
PHE
GLU
93
97
1.60
3
A
A
O
H
VAL
GLU
82
86
1.38
3
A
A
O
H
LYS
HIS
79
83
1.55
3
A
A
O
H
PHE
GLU
93
97
1.57
3
A
A
O
H
LEU
ASN
68
72
1.59
4
A
A
O
H
VAL
GLU
82
86
1.38
4
A
A
O
H
ILE
ILE
85
89
1.57
4
A
A
O
H
PHE
GLU
93
97
1.59
4
A
A
O
H
LEU
ASP
30
34
1.59
5
A
A
O
H
VAL
GLU
82
86
1.35
5
A
A
O
H
LYS
HIS
79
83
1.58
6
A
A
O
H
VAL
GLU
82
86
1.47
6
A
A
O
H
PHE
GLU
93
97
1.59
6
A
A
O
H
THR
ILE
81
85
1.59
6
A
A
O
H
LEU
TRP
19
23
1.59
7
A
A
O
H
VAL
GLU
82
86
1.39
7
A
A
O
H
ILE
ILE
85
89
1.51
7
A
A
O
H
PHE
GLU
93
97
1.55
7
A
A
O
H
LEU
ASN
68
72
1.57
8
A
A
O
H
VAL
GLU
82
86
1.39
8
A
A
O
H
LEU
HIS
71
74
1.59
9
A
A
O
H
VAL
GLU
82
86
1.37
9
A
A
O
H
LYS
HIS
79
83
1.54
9
A
A
O
H
PHE
GLU
93
97
1.57
10
A
A
O
H
VAL
GLU
82
86
1.38
11
A
A
O
H
VAL
GLU
82
86
1.43
11
A
A
O
H
ILE
ILE
85
89
1.55
11
A
A
O
H
PHE
GLU
93
97
1.59
12
A
A
O
H
VAL
GLU
82
86
1.39
12
A
A
O
H
PHE
GLU
93
97
1.56
12
A
A
O
H
LEU
ASN
68
72
1.58
13
A
A
O
H
VAL
GLU
82
86
1.40
13
A
A
O
H
LYS
HIS
79
83
1.54
13
A
A
O
H
ILE
MET
44
48
1.57
13
A
A
O
H
ILE
ILE
85
89
1.60
14
A
A
O
H
VAL
GLU
82
86
1.42
14
A
A
O
H
PHE
GLU
93
97
1.55
15
A
A
O
H
VAL
GLU
82
86
1.51
15
A
A
O
H
LEU
ASP
30
34
1.57
15
A
A
O
H
PHE
GLU
93
97
1.58
1
A
ASN
22
-152.97
19.93
1
A
HIS
24
-178.44
-52.42
1
A
HIS
74
-155.38
34.51
1
A
LEU
75
-51.23
90.34
1
A
GLN
76
-65.64
68.30
1
A
THR
81
-69.03
-74.16
2
A
TYR
2
-96.96
40.88
2
A
ASN
22
-146.50
10.84
2
A
HIS
24
-179.13
-51.78
2
A
VAL
33
-90.01
-60.25
2
A
HIS
74
-154.97
32.31
2
A
LEU
75
-52.67
88.31
2
A
GLN
76
-67.97
69.70
2
A
THR
81
-67.45
-74.41
2
A
LEU
99
-96.10
-67.20
3
A
HIS
24
179.56
58.67
3
A
HIS
74
-153.82
28.72
3
A
LEU
75
-49.38
85.30
3
A
THR
81
-69.93
-74.23
4
A
HIS
24
179.04
47.18
4
A
HIS
74
-147.19
26.97
4
A
LEU
75
-49.50
91.95
4
A
GLN
76
-64.54
68.23
4
A
THR
81
-69.69
-74.64
5
A
ASN
22
-146.01
12.63
5
A
HIS
24
-178.32
-51.18
5
A
HIS
74
-156.33
30.08
5
A
LEU
75
-50.70
85.25
5
A
THR
81
-68.67
-73.26
5
A
LEU
99
-100.81
-63.02
5
A
HIS
101
-96.59
33.63
6
A
HIS
24
-175.97
-52.65
6
A
HIS
74
-150.92
36.49
6
A
LEU
75
-67.46
85.35
6
A
GLN
76
-68.03
65.75
7
A
HIS
24
-175.20
-48.66
7
A
HIS
74
-152.15
32.71
7
A
LEU
75
-54.65
83.28
7
A
THR
81
-69.93
-74.40
8
A
ASN
22
-145.41
-20.12
8
A
HIS
24
-178.86
-53.13
8
A
SER
53
-64.59
-168.32
8
A
LEU
75
-51.92
92.08
8
A
GLN
76
-64.30
69.14
8
A
THR
81
-68.02
-74.56
9
A
TYR
2
-99.32
54.61
9
A
HIS
24
179.39
57.60
9
A
HIS
74
-150.90
32.03
9
A
LEU
75
-50.27
82.76
9
A
THR
81
-69.55
-74.15
9
A
HIS
101
-98.33
31.33
10
A
HIS
24
-177.90
-52.49
10
A
HIS
74
-158.68
35.63
10
A
LEU
75
-54.67
88.44
10
A
GLN
76
-63.76
69.25
10
A
THR
81
-67.49
-72.57
11
A
ASN
22
-142.10
10.64
11
A
HIS
24
-179.99
-52.12
11
A
HIS
74
-154.09
31.92
11
A
LEU
75
-50.32
90.27
11
A
GLN
76
-66.25
68.85
11
A
THR
81
-67.15
-74.36
11
A
HIS
101
-94.83
33.57
12
A
ASN
22
-148.61
18.59
12
A
HIS
24
179.94
52.10
12
A
SER
53
-59.89
-175.87
12
A
HIS
74
-151.98
27.89
12
A
LEU
75
-51.38
89.34
12
A
GLN
76
-66.36
68.09
12
A
THR
81
-67.97
-73.53
13
A
HIS
24
-176.75
-49.38
13
A
HIS
74
-151.53
36.34
13
A
LEU
75
-52.08
86.55
13
A
THR
81
-69.48
-73.34
13
A
HIS
101
-96.08
32.99
14
A
TYR
2
-103.81
66.76
14
A
ASN
22
-153.93
19.25
14
A
HIS
24
-177.15
-51.16
14
A
SER
53
-85.76
36.51
14
A
LEU
71
-75.05
-70.82
14
A
HIS
74
-151.96
24.31
14
A
LEU
75
-47.63
94.74
14
A
THR
81
-68.04
-75.10
15
A
TYR
2
-101.09
76.88
15
A
LYS
17
-39.14
-39.55
15
A
ASN
22
-152.69
10.14
15
A
HIS
24
-178.41
-50.64
15
A
LEU
71
-76.98
-72.04
15
A
HIS
74
-146.41
29.46
15
A
LEU
75
-49.93
88.90
Solution structure of S-824, a de novo designed four helix bundle
1
N
N
A
LYS
4
A
LYS
4
HELX_P
A
LYS
21
A
LYS
21
1
1
18
A
LEU
30
A
LEU
30
HELX_P
A
ASP
46
A
ASP
46
1
2
17
A
GLY
55
A
GLY
55
HELX_P
A
MET
60
A
MET
60
1
3
6
A
MET
60
A
MET
60
HELX_P
A
ASN
73
A
ASN
73
1
4
14
A
GLY
78
A
GLY
78
HELX_P
A
LYS
90
A
LYS
90
1
5
13
A
GLU
91
A
GLU
91
HELX_P
A
HIS
101
A
HIS
101
1
6
11
DE NOVO PROTEIN
Protein, four helix bundle, de novo design, DE NOVO PROTEIN
1P68
PDB
1
1P68
1
102
1P68
1
102
1P68
A
1
1
102