1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Melckebeke, H.V.
Vreuls, C.
Gans, P.
Llabres, G.
Filee, P.
Joris, B.
Simorre, J.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
333
711
720
10.1016/j.jmb.2003.09.005
14568532
Solution structural study of BlaI: implications for the repression of genes involved in beta-lactam antibiotic resistance.
2003
10.2210/pdb1p6r/pdb
pdb_00001p6r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
9512.079
Penicillinase repressor
N-terminal domain (residues 1-82)
1
man
polymer
Regulatory protein blaI, Beta-lactamase repressor protein
no
no
MKKIPQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDESDYIEV
KS
MKKIPQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDESDYIEV
KS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
Escherichia
sample
BLAI OR PENI
1402
Bacillus licheniformis
562
Escherichia coli
BL21(DE3) pLys
PLASMID
pET22
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-12-09
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2003-04-30
REL
REL
structures with the lowest energy
80
19
2D NOESY
3D_13C-separated_NOESY
3D_15N-separated_NOESY
3D-13C-separated NOESY optimized for CH groups
4D 13C-separated-HSQC-NOESY-HSQC
300 mM KCl, 75 mM phosphate sodium
7.6
ambient
298
K
300 mM KCl, 75 mM phosphate sodium
7.6
ambient
298
K
For structure calculation, a total of 1252 interproton and 110 dihedral restraints were used. The distance constraints contain 596 intraresidue, 205 sequential, 87 medium-range, 145 long-range, and 219 ambiguous correlations.
simulated annealing, molecular dynamics
19
lowest energy
U-15N 0.75 mM,
phosphate buffer 75 mM pH 7.6, 300 mM KCl
90% H2O, 10% D2O
90% H2O/10% D2O
U-15N-13C 0.50 mM,
phosphate buffer 75 mM pH 7.6, 300 mM KCl
90% H2O, 10% D2O
90% H2O/10% D2O
Accelrys
processing
Felix
2000
Accelrys
structure solution
Discover
2000
Pearlman
refinement
Amber
1991
Cornilescu
data analysis
TALOS
1999
800
Varian
INOVA
600
Varian
INOVA
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
LYS
3
n
3
LYS
3
A
ILE
4
n
4
ILE
4
A
PRO
5
n
5
PRO
5
A
GLN
6
n
6
GLN
6
A
ILE
7
n
7
ILE
7
A
SER
8
n
8
SER
8
A
ASP
9
n
9
ASP
9
A
ALA
10
n
10
ALA
10
A
GLU
11
n
11
GLU
11
A
LEU
12
n
12
LEU
12
A
GLU
13
n
13
GLU
13
A
VAL
14
n
14
VAL
14
A
MET
15
n
15
MET
15
A
LYS
16
n
16
LYS
16
A
VAL
17
n
17
VAL
17
A
ILE
18
n
18
ILE
18
A
TRP
19
n
19
TRP
19
A
LYS
20
n
20
LYS
20
A
HIS
21
n
21
HIS
21
A
SER
22
n
22
SER
22
A
SER
23
n
23
SER
23
A
ILE
24
n
24
ILE
24
A
ASN
25
n
25
ASN
25
A
THR
26
n
26
THR
26
A
ASN
27
n
27
ASN
27
A
GLU
28
n
28
GLU
28
A
VAL
29
n
29
VAL
29
A
ILE
30
n
30
ILE
30
A
LYS
31
n
31
LYS
31
A
GLU
32
n
32
GLU
32
A
LEU
33
n
33
LEU
33
A
SER
34
n
34
SER
34
A
LYS
35
n
35
LYS
35
A
THR
36
n
36
THR
36
A
SER
37
n
37
SER
37
A
THR
38
n
38
THR
38
A
TRP
39
n
39
TRP
39
A
SER
40
n
40
SER
40
A
PRO
41
n
41
PRO
41
A
LYS
42
n
42
LYS
42
A
THR
43
n
43
THR
43
A
ILE
44
n
44
ILE
44
A
GLN
45
n
45
GLN
45
A
THR
46
n
46
THR
46
A
MET
47
n
47
MET
47
A
LEU
48
n
48
LEU
48
A
LEU
49
n
49
LEU
49
A
ARG
50
n
50
ARG
50
A
LEU
51
n
51
LEU
51
A
ILE
52
n
52
ILE
52
A
LYS
53
n
53
LYS
53
A
LYS
54
n
54
LYS
54
A
GLY
55
n
55
GLY
55
A
ALA
56
n
56
ALA
56
A
LEU
57
n
57
LEU
57
A
ASN
58
n
58
ASN
58
A
HIS
59
n
59
HIS
59
A
HIS
60
n
60
HIS
60
A
LYS
61
n
61
LYS
61
A
GLU
62
n
62
GLU
62
A
GLY
63
n
63
GLY
63
A
ARG
64
n
64
ARG
64
A
VAL
65
n
65
VAL
65
A
PHE
66
n
66
PHE
66
A
VAL
67
n
67
VAL
67
A
TYR
68
n
68
TYR
68
A
THR
69
n
69
THR
69
A
PRO
70
n
70
PRO
70
A
ASN
71
n
71
ASN
71
A
ILE
72
n
72
ILE
72
A
ASP
73
n
73
ASP
73
A
GLU
74
n
74
GLU
74
A
SER
75
n
75
SER
75
A
ASP
76
n
76
ASP
76
A
TYR
77
n
77
TYR
77
A
ILE
78
n
78
ILE
78
A
GLU
79
n
79
GLU
79
A
VAL
80
n
80
VAL
80
A
LYS
81
n
81
LYS
81
A
SER
82
n
82
SER
82
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
24
A
N
ILE
24
A
O
TYR
68
A
O
TYR
68
A
O
VAL
67
A
O
VAL
67
A
N
HIS
60
A
N
HIS
60
1
A
TYR
68
0.133
SIDE CHAIN
1
A
TYR
77
0.080
SIDE CHAIN
2
A
PHE
66
0.093
SIDE CHAIN
2
A
TYR
68
0.120
SIDE CHAIN
3
A
TYR
68
0.086
SIDE CHAIN
3
A
TYR
77
0.176
SIDE CHAIN
4
A
TYR
68
0.083
SIDE CHAIN
6
A
PHE
66
0.128
SIDE CHAIN
7
A
TYR
68
0.141
SIDE CHAIN
8
A
TYR
68
0.080
SIDE CHAIN
9
A
TYR
68
0.070
SIDE CHAIN
10
A
PHE
66
0.084
SIDE CHAIN
10
A
TYR
68
0.128
SIDE CHAIN
11
A
TYR
68
0.120
SIDE CHAIN
12
A
PHE
66
0.076
SIDE CHAIN
13
A
ARG
64
0.082
SIDE CHAIN
13
A
TYR
77
0.122
SIDE CHAIN
14
A
TYR
68
0.102
SIDE CHAIN
15
A
TYR
68
0.093
SIDE CHAIN
16
A
PHE
66
0.072
SIDE CHAIN
16
A
TYR
68
0.101
SIDE CHAIN
17
A
TYR
68
0.123
SIDE CHAIN
18
A
PHE
66
0.091
SIDE CHAIN
18
A
TYR
77
0.085
SIDE CHAIN
19
A
TYR
68
0.142
SIDE CHAIN
1
A
THR
38
-68.16
70.98
1
A
ASP
73
-156.29
-55.36
1
A
ASP
76
-68.32
81.44
1
A
TYR
77
62.73
75.52
1
A
LYS
81
-64.76
76.00
2
A
SER
23
-131.93
-158.16
2
A
GLU
62
-110.21
77.78
2
A
SER
75
-65.38
-76.52
2
A
ASP
76
-73.59
40.76
3
A
LYS
2
60.54
-67.71
3
A
SER
23
-131.91
-158.17
3
A
THR
38
-68.29
60.41
3
A
GLU
74
56.61
-78.59
3
A
ASP
76
53.72
-77.90
4
A
ILE
4
-152.40
74.04
4
A
SER
23
-131.46
-157.90
4
A
LYS
81
-179.23
-119.40
6
A
SER
22
-98.83
-61.69
6
A
GLU
74
62.18
-72.63
6
A
TYR
77
-162.78
115.84
7
A
LYS
2
68.92
-70.51
7
A
SER
23
-132.68
-158.48
7
A
THR
36
-93.24
-62.12
7
A
THR
38
-67.84
66.43
7
A
ASP
73
-155.11
-62.07
7
A
ASP
76
48.82
-105.82
7
A
LYS
81
-104.49
55.86
8
A
ILE
4
33.20
61.71
8
A
GLN
6
-69.26
78.96
8
A
SER
23
-131.54
-157.57
8
A
THR
36
-98.48
-70.03
8
A
ALA
56
-97.97
-70.54
8
A
PRO
70
-64.33
88.51
8
A
GLU
74
-34.41
-70.83
8
A
SER
75
-90.49
31.39
8
A
LYS
81
60.79
-131.37
9
A
LYS
3
-150.25
-57.44
9
A
SER
23
-132.50
-157.26
9
A
THR
38
-65.30
81.74
10
A
ILE
4
-155.36
68.65
10
A
SER
23
-132.71
-159.66
10
A
THR
38
-69.24
70.40
10
A
TYR
77
-72.99
49.99
11
A
SER
23
-132.44
-158.25
11
A
THR
38
-64.83
78.76
11
A
ASP
76
-94.87
33.05
11
A
TYR
77
-64.17
-78.17
11
A
LYS
81
-158.94
-50.12
12
A
GLN
6
-80.35
48.29
12
A
SER
23
-130.65
-156.60
12
A
LYS
54
-72.48
26.66
12
A
ALA
56
-131.25
-39.55
13
A
LYS
2
67.16
91.21
13
A
LYS
3
68.11
-76.38
13
A
ILE
4
-33.15
99.61
13
A
SER
23
-131.62
-158.10
13
A
ASP
73
-155.48
-54.18
13
A
SER
75
-74.33
47.97
13
A
ASP
76
-47.72
94.68
14
A
LYS
3
66.96
-67.17
14
A
PRO
5
-49.73
157.45
14
A
SER
23
-131.29
-157.21
14
A
THR
38
-67.79
65.92
14
A
LYS
54
-71.81
26.90
14
A
ALA
56
-121.74
-58.11
15
A
ILE
4
-29.00
-64.08
15
A
SER
23
-129.21
-157.90
15
A
LYS
54
-72.20
26.45
15
A
GLU
74
56.55
-81.86
15
A
SER
75
-87.53
49.92
15
A
ASP
76
-84.61
-156.54
16
A
HIS
21
-66.86
-174.30
16
A
SER
22
-98.79
-60.98
16
A
ARG
64
-171.95
-58.69
16
A
LYS
81
59.06
-135.21
17
A
SER
23
-131.90
-157.87
17
A
THR
38
-62.56
80.25
17
A
GLU
74
57.40
-71.15
17
A
SER
75
-25.39
-92.03
17
A
ASP
76
105.92
150.67
18
A
SER
23
-132.37
-158.26
19
A
SER
23
-132.24
-158.01
Solution structure of the DNA binding domain of the repressor BlaI.
1
N
N
A
SER
8
A
SER
8
HELX_P
A
LYS
20
A
LYS
20
1
1
13
A
THR
26
A
THR
26
HELX_P
A
SER
37
A
SER
37
1
2
12
A
SER
40
A
SER
40
HELX_P
A
LYS
54
A
LYS
54
1
3
15
TRANSCRIPTION
Transcription regulation, Repressor, DNA-binding, Winged Helix Protein, Bacterial resistance to antibiotics, TRANSCRIPTION
BLAI_BACLI
UNP
1
1
P06555
MKKIPQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDESDYIEV
KS
1
82
1P6R
1
82
P06555
A
1
1
82
3
anti-parallel
anti-parallel
A
ILE
24
A
ILE
24
A
ASN
25
A
ASN
25
A
VAL
65
A
VAL
65
A
PRO
70
A
PRO
70
A
LEU
57
A
LEU
57
A
GLU
62
A
GLU
62