0.010032
0.000000
0.000000
0.000000
0.010032
0.000000
0.000000
0.000000
0.004830
0.00000
0.00000
0.00000
Gutmann, S.
Haebel, P.W.
Metzinger, L.
Sutter, M.
Felden, B.
Ban, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
99.680
99.680
207.050
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
O
N
147
N
P
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
C
N
152
R
C
N
153
N
O
N
154
S
C
N
155
N
O
N
156
R
C
N
157
N
O
N
158
R
C
Y
159
N
N
Y
160
N
C
Y
161
N
N
Y
162
N
C
N
163
N
C
N
164
N
O
N
165
N
N
N
166
N
C
N
167
N
N
N
168
N
N
Y
169
N
C
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
O
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
N
C
N
225
N
C
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
Y
238
N
C
Y
239
N
N
Y
240
N
C
Y
241
N
C
Y
242
N
N
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
S
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
N
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
S
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
C
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
R
C
N
402
N
O
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
N
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
N
452
N
O
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
O
N
466
N
P
N
467
N
O
N
468
N
O
N
469
N
O
N
470
N
C
N
471
R
C
N
472
N
O
N
473
S
C
N
474
N
O
N
475
R
C
N
476
N
O
N
477
R
C
N
478
N
N
N
479
N
C
N
480
N
O
N
481
N
N
N
482
N
C
N
483
N
O
N
484
N
C
N
485
N
C
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
N
N
500
S
C
N
501
N
C
N
502
N
O
N
503
N
C
N
504
N
C
N
505
N
C
N
506
N
O
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
Y
169
N
sing
Y
170
N
sing
Y
171
N
doub
N
172
N
sing
Y
173
N
sing
N
174
N
sing
Y
175
N
doub
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
Y
242
N
sing
Y
243
N
doub
Y
244
N
doub
N
245
N
sing
Y
246
N
sing
N
247
N
sing
Y
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
Y
348
N
doub
Y
349
N
sing
Y
350
N
sing
N
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
Y
417
N
doub
Y
418
N
sing
Y
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
Y
445
N
doub
Y
446
N
sing
Y
447
N
sing
N
448
N
sing
Y
449
N
doub
N
450
N
sing
Y
451
N
doub
N
452
N
sing
Y
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
doub
N
489
N
sing
N
490
N
doub
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
doub
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
UK
Nature
NATUAS
0006
0028-0836
424
699
703
10.1038/nature01831
12904796
Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB
2003
10.2210/pdb1p6v/pdb
pdb_00001p6v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-11-12
MARRESEARCH
Si 111
SINGLE WAVELENGTH
M
x-ray
1
1.008
1.0
X06SA
SLS
1.008
SYNCHROTRON
SLS BEAMLINE X06SA
21959.070
45-MER
2
syn
polymer
18440.818
SsrA-binding protein
2
man
polymer
no
no
GGGGGCGGAAAGGAUUCGACGGGGACUUCGGUCCUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
GGGGGCGGAAAGGAUUCGACGGGGACUUCGGUCCUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
B,D
polyribonucleotide
no
no
GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPL
RKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGKIHL
GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPL
RKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGKIHL
A,C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aquifex
Escherichia
sample
SMPB
63363
Aquifex aeolicus
562
Escherichia coli
1
5.22
76.25
VAPOR DIFFUSION, SITTING DROP
6.8
Isopropanol, cacodylate, ammonium acetate, magnesium acetate, calcium acetate, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
Isopropanol
1
cacodylate
1
ammonium acetate
1
magnesium acetate
1
calcium acetate
1
H2O
1
cacodylate
2
magnesium acetate
2
calcium acetate
2
H2O
2
-27.254
B
19
B
38
-1.519
B_A19:G38_B
1
-3.490
-4.597
-1.644
0.226
4.763
1
19
B
20
B
37
0.520
B_C20:G37_B
2
-2.982
-0.144
-0.746
-0.159
2.686
1
19
B
21
B
36
3.683
B_G21:C36_B
3
-10.732
-0.858
-0.236
-0.279
-11.030
28
B
22
B
35
5.067
B_G22:U35_B
4
-19.048
-2.349
-0.906
-0.689
-6.971
1
19
B
23
B
34
3.337
B_G23:C34_B
5
-8.374
-0.194
0.132
-0.237
9.785
1
B
24
B
33
10.835
B_G24:C33_B
6
-2.689
-0.346
0.554
0.168
25.038
1
20
B
25
B
32
6.227
B_A25:U32_B
7
3.676
-0.588
0.490
0.208
3.994
1
19
B
26
B
31
6.607
B_C26:G31_B
8
10.411
1.211
0.464
-0.419
-1.216
1
19
B
41
B
57
-14.399
B_G41:C57_B
9
-27.023
0.373
1.431
-0.188
-18.500
B
42
B
56
-15.307
B_C42:G56_B
10
-17.415
2.060
0.523
-0.554
14.300
1
19
B
43
B
55
-2.954
B_G43:C55_B
11
-1.154
-0.305
0.836
0.161
4.309
1
19
B
44
B
54
-12.734
B_G44:C54_B
12
-6.907
-1.043
0.043
-0.478
-26.641
1
B
45
B
53
-18.915
B_G45:C53_B
13
-8.354
1.304
-1.339
-0.214
6.215
2
B
46
B
50
165.483
B_U46:A50_B
14
30.474
0.225
0.489
1.735
-28.883
D
19
D
38
-7.206
D_A19:G38_D
15
9.993
-5.737
-2.018
-0.819
4.430
1
19
D
20
D
37
0.858
D_C20:G37_D
16
-2.675
-0.165
-0.754
-0.164
1.559
1
19
D
21
D
36
3.681
D_G21:C36_D
17
-10.615
-0.862
-0.290
-0.290
-12.175
28
D
22
D
35
5.065
D_G22:U35_D
18
-18.649
-2.348
-1.006
-0.694
-7.174
1
19
D
23
D
34
3.490
D_G23:C34_D
19
-7.519
-0.203
0.125
-0.234
12.342
1
D
24
D
33
10.678
D_G24:C33_D
20
-1.708
-0.345
0.648
0.177
26.574
1
20
D
25
D
32
5.975
D_A25:U32_D
21
3.626
-0.600
0.562
0.229
4.218
1
19
D
26
D
31
6.515
D_C26:G31_D
22
11.142
1.197
0.478
-0.411
2.722
45.214
B
B
19
20
5.115
B
B
38
37
2.686
3.870
-0.484
0.269
BB_A19C20:G37G38_BB
1
-13.918
18.394
42.959
0.057
-0.427
2.246
32.306
B
B
20
21
24.994
B
B
37
36
3.106
13.455
0.264
-1.279
BB_C20G21:C36G37_BB
2
-4.578
8.505
29.087
-4.360
-1.175
1.908
34.713
B
B
21
22
33.718
B
B
36
35
3.334
19.034
0.330
-1.712
BB_G21G22:U35C36_BB
3
3.197
-5.663
28.991
-5.433
-0.123
3.331
38.422
B
B
22
23
0.709
B
B
35
34
3.408
0.464
0.030
-0.943
BB_G22G23:C34U35_BB
4
-7.446
11.381
37.718
-1.494
-1.011
2.542
28.108
B
B
23
24
3.225
B
B
34
33
2.598
1.565
1.328
-2.122
BB_G23G24:C33C34_BB
5
1.444
-2.976
28.029
-4.658
-2.468
2.498
22.465
B
B
24
25
4.736
B
B
33
32
2.649
1.839
-0.860
-2.808
BB_G24A25:U32C33_BB
6
-2.791
7.191
22.219
-7.743
1.392
3.148
42.275
B
B
25
26
16.642
B
B
32
31
3.737
11.846
-0.472
-1.773
BB_A25C26:G31U32_BB
7
-3.056
4.294
40.544
-3.766
0.318
3.933
47.100
B
B
41
42
0.061
B
B
57
56
3.983
0.049
-1.148
-2.298
BB_G41C42:G56C57_BB
8
1.950
-2.440
47.062
-2.881
1.630
1.139
19.315
B
B
42
43
17.303
B
B
56
55
1.974
5.683
0.598
-2.035
BB_C42G43:C55G56_BB
9
-3.769
11.477
18.082
-7.463
-2.708
1.566
27.571
B
B
43
44
28.709
B
B
55
54
3.240
13.036
0.549
-2.861
BB_G43G44:C54C55_BB
10
5.915
-13.027
23.625
-8.532
-0.005
3.799
48.495
B
B
44
45
12.194
B
B
54
53
4.377
9.935
-0.553
-2.151
BB_G44G45:C53C54_BB
11
5.280
-6.480
47.248
-3.592
1.190
1.497
-63.370
B
B
45
46
28.243
B
B
53
50
2.268
-28.599
1.225
-1.813
BB_G45U46:A50C53_BB
12
-12.966
-12.805
-55.760
2.512
0.809
2.606
52.058
D
D
19
20
-4.622
D
D
38
37
2.624
-4.021
-0.375
0.407
DD_A19C20:G37G38_DD
13
-12.128
13.942
50.572
0.682
-0.230
2.278
32.169
D
D
20
21
24.489
D
D
37
36
3.112
13.142
0.241
-1.265
DD_C20G21:C36G37_DD
14
-4.676
8.714
29.060
-4.322
-1.161
1.934
34.787
D
D
21
22
33.965
D
D
36
35
3.372
19.192
0.334
-1.699
DD_G21G22:U35C36_DD
15
3.527
-6.242
28.940
-5.452
-0.078
3.299
38.648
D
D
22
23
0.476
D
D
35
34
3.383
0.313
0.030
-0.919
DD_G22G23:C34U35_DD
16
-8.147
12.396
37.811
-1.429
-1.081
2.493
28.024
D
D
23
24
1.596
D
D
34
33
2.518
0.773
1.342
-2.149
DD_G23G24:C33C34_DD
17
0.746
-1.541
28.004
-4.579
-2.636
2.515
22.352
D
D
24
25
3.714
D
D
33
32
2.628
1.436
-0.839
-2.862
DD_G24A25:U32C33_DD
18
-2.399
6.204
22.179
-7.804
1.457
3.099
42.523
D
D
25
26
17.466
D
D
32
31
3.740
12.491
-0.471
-1.809
DD_A25C26:G31U32_DD
19
-2.249
3.145
40.668
-3.849
0.406
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2003-08-12
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2003-04-30
REL
REL
In vitro transcription of Aquifex aeolicus tmRNA[delta]
sample
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
n
11
11
B
n
12
12
B
G
13
n
13
G
13
B
A
14
n
14
A
14
B
U
15
n
15
U
15
B
U
16
n
16
U
16
B
C
17
n
17
C
17
B
G
18
n
18
G
18
B
A
19
n
19
A
19
B
C
20
n
20
C
20
B
G
21
n
21
G
21
B
G
22
n
22
G
22
B
G
23
n
23
G
23
B
G
24
n
24
G
24
B
A
25
n
25
A
25
B
C
26
n
26
C
26
B
U
27
n
27
U
27
B
U
28
n
28
U
28
B
C
29
n
29
C
29
B
G
30
n
30
G
30
B
G
31
n
31
G
31
B
U
32
n
32
U
32
B
C
33
n
33
C
33
B
C
34
n
34
C
34
B
U
35
n
35
U
35
B
C
36
n
36
C
36
B
G
37
n
37
G
37
B
G
38
n
38
G
38
B
A
39
n
39
A
39
B
C
40
n
40
C
40
B
G
41
n
41
G
41
B
C
42
n
42
C
42
B
G
43
n
43
G
43
B
G
44
n
44
G
44
B
G
45
n
45
G
45
B
U
46
n
46
U
46
B
U
47
n
47
U
47
B
C
48
n
48
C
48
B
G
49
n
49
G
49
B
A
50
n
50
A
50
B
U
51
n
51
U
51
B
U
52
n
52
U
52
B
C
53
n
53
C
53
B
C
54
n
54
C
54
B
C
55
n
55
C
55
B
G
56
n
56
G
56
B
C
57
n
57
C
57
B
n
58
58
B
n
59
59
B
n
60
60
B
n
61
61
B
n
62
62
B
n
63
63
B
n
64
64
B
n
65
65
B
n
66
66
B
n
67
67
B
n
68
68
B
n
1
1
D
n
2
2
D
n
3
3
D
n
4
4
D
n
5
5
D
n
6
6
D
n
7
7
D
n
8
8
D
n
9
9
D
n
10
10
D
n
11
11
D
n
12
12
D
n
13
13
D
n
14
14
D
n
15
15
D
U
16
n
16
U
16
D
C
17
n
17
C
17
D
G
18
n
18
G
18
D
A
19
n
19
A
19
D
C
20
n
20
C
20
D
G
21
n
21
G
21
D
G
22
n
22
G
22
D
G
23
n
23
G
23
D
G
24
n
24
G
24
D
A
25
n
25
A
25
D
C
26
n
26
C
26
D
U
27
n
27
U
27
D
U
28
n
28
U
28
D
C
29
n
29
C
29
D
G
30
n
30
G
30
D
G
31
n
31
G
31
D
U
32
n
32
U
32
D
C
33
n
33
C
33
D
C
34
n
34
C
34
D
U
35
n
35
U
35
D
C
36
n
36
C
36
D
G
37
n
37
G
37
D
G
38
n
38
G
38
D
A
39
n
39
A
39
D
n
40
40
D
n
41
41
D
n
42
42
D
n
43
43
D
n
44
44
D
n
45
45
D
n
46
46
D
n
47
47
D
n
48
48
D
n
49
49
D
n
50
50
D
n
51
51
D
n
52
52
D
n
53
53
D
n
54
54
D
n
55
55
D
n
56
56
D
n
57
57
D
n
58
58
D
n
59
59
D
n
60
60
D
n
61
61
D
n
62
62
D
n
63
63
D
n
64
64
D
n
65
65
D
n
66
66
D
n
67
67
D
n
68
68
D
n
1
1
A
n
2
2
A
SER
3
n
3
SER
3
A
ASP
4
n
4
ASP
4
A
LYS
5
n
5
LYS
5
A
ILE
6
n
6
ILE
6
A
ILE
7
n
7
ILE
7
A
PRO
8
n
8
PRO
8
A
ILE
9
n
9
ILE
9
A
ALA
10
n
10
ALA
10
A
GLU
11
n
11
GLU
11
A
ASN
12
n
12
ASN
12
A
LYS
13
n
13
LYS
13
A
GLU
14
n
14
GLU
14
A
ALA
15
n
15
ALA
15
A
LYS
16
n
16
LYS
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
TYR
19
n
19
TYR
19
A
ASP
20
n
20
ASP
20
A
ILE
21
n
21
ILE
21
A
LEU
22
n
22
LEU
22
A
GLU
23
n
23
GLU
23
A
THR
24
n
24
THR
24
A
TYR
25
n
25
TYR
25
A
GLU
26
n
26
GLU
26
A
ALA
27
n
27
ALA
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
VAL
30
n
30
VAL
30
A
LEU
31
n
31
LEU
31
A
LYS
32
n
32
LYS
32
A
GLY
33
n
33
GLY
33
A
SER
34
n
34
SER
34
A
GLU
35
n
35
GLU
35
A
VAL
36
n
36
VAL
36
A
LYS
37
n
37
LYS
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ARG
40
n
40
ARG
40
A
GLU
41
n
41
GLU
41
A
LYS
42
n
42
LYS
42
A
GLY
43
n
43
GLY
43
A
THR
44
n
44
THR
44
A
VAL
45
n
45
VAL
45
A
SER
46
n
46
SER
46
A
PHE
47
n
47
PHE
47
A
LYS
48
n
48
LYS
48
A
ASP
49
n
49
ASP
49
A
SER
50
n
50
SER
50
A
PHE
51
n
51
PHE
51
A
VAL
52
n
52
VAL
52
A
ARG
53
n
53
ARG
53
A
ILE
54
n
54
ILE
54
A
GLU
55
n
55
GLU
55
A
ASN
56
n
56
ASN
56
A
GLY
57
n
57
GLY
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
TRP
60
n
60
TRP
60
A
LEU
61
n
61
LEU
61
A
TYR
62
n
62
TYR
62
A
ASN
63
n
63
ASN
63
A
LEU
64
n
64
LEU
64
A
TYR
65
n
65
TYR
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
PRO
68
n
68
PRO
68
A
TYR
69
n
69
TYR
69
A
LYS
70
n
70
LYS
70
A
HIS
71
n
71
HIS
71
A
ALA
72
n
72
ALA
72
A
n
73
73
A
n
74
74
A
n
75
75
A
ASN
76
n
76
ASN
76
A
HIS
77
n
77
HIS
77
A
ASP
78
n
78
ASP
78
A
PRO
79
n
79
PRO
79
A
LEU
80
n
80
LEU
80
A
ARG
81
n
81
ARG
81
A
LYS
82
n
82
LYS
82
A
ARG
83
n
83
ARG
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
LEU
86
n
86
LEU
86
A
LEU
87
n
87
LEU
87
A
HIS
88
n
88
HIS
88
A
LYS
89
n
89
LYS
89
A
ARG
90
n
90
ARG
90
A
GLU
91
n
91
GLU
91
A
ILE
92
n
92
ILE
92
A
MET
93
n
93
MET
93
A
ARG
94
n
94
ARG
94
A
LEU
95
n
95
LEU
95
A
TYR
96
n
96
TYR
96
A
GLY
97
n
97
GLY
97
A
LYS
98
n
98
LYS
98
A
VAL
99
n
99
VAL
99
A
GLN
100
n
100
GLN
100
A
GLU
101
n
101
GLU
101
A
LYS
102
n
102
LYS
102
A
GLY
103
n
103
GLY
103
A
TYR
104
n
104
TYR
104
A
THR
105
n
105
THR
105
A
ILE
106
n
106
ILE
106
A
ILE
107
n
107
ILE
107
A
PRO
108
n
108
PRO
108
A
LEU
109
n
109
LEU
109
A
LYS
110
n
110
LYS
110
A
LEU
111
n
111
LEU
111
A
TYR
112
n
112
TYR
112
A
TRP
113
n
113
TRP
113
A
LYS
114
n
114
LYS
114
A
ASN
115
n
115
ASN
115
A
ASN
116
n
116
ASN
116
A
LYS
117
n
117
LYS
117
A
VAL
118
n
118
VAL
118
A
LYS
119
n
119
LYS
119
A
VAL
120
n
120
VAL
120
A
LEU
121
n
121
LEU
121
A
ILE
122
n
122
ILE
122
A
ALA
123
n
123
ALA
123
A
LEU
124
n
124
LEU
124
A
ALA
125
n
125
ALA
125
A
LYS
126
n
126
LYS
126
A
GLY
127
n
127
GLY
127
A
LYS
128
n
128
LYS
128
A
LYS
129
n
129
LYS
129
A
LEU
130
n
130
LEU
130
A
n
131
131
A
n
132
132
A
n
133
133
A
n
134
134
A
n
135
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
1
1
C
n
2
2
C
SER
3
n
3
SER
3
C
ASP
4
n
4
ASP
4
C
LYS
5
n
5
LYS
5
C
ILE
6
n
6
ILE
6
C
ILE
7
n
7
ILE
7
C
PRO
8
n
8
PRO
8
C
ILE
9
n
9
ILE
9
C
ALA
10
n
10
ALA
10
C
GLU
11
n
11
GLU
11
C
ASN
12
n
12
ASN
12
C
LYS
13
n
13
LYS
13
C
GLU
14
n
14
GLU
14
C
ALA
15
n
15
ALA
15
C
LYS
16
n
16
LYS
16
C
ALA
17
n
17
ALA
17
C
LYS
18
n
18
LYS
18
C
TYR
19
n
19
TYR
19
C
ASP
20
n
20
ASP
20
C
ILE
21
n
21
ILE
21
C
LEU
22
n
22
LEU
22
C
GLU
23
n
23
GLU
23
C
THR
24
n
24
THR
24
C
TYR
25
n
25
TYR
25
C
GLU
26
n
26
GLU
26
C
ALA
27
n
27
ALA
27
C
GLY
28
n
28
GLY
28
C
ILE
29
n
29
ILE
29
C
VAL
30
n
30
VAL
30
C
LEU
31
n
31
LEU
31
C
LYS
32
n
32
LYS
32
C
GLY
33
n
33
GLY
33
C
SER
34
n
34
SER
34
C
GLU
35
n
35
GLU
35
C
VAL
36
n
36
VAL
36
C
LYS
37
n
37
LYS
37
C
SER
38
n
38
SER
38
C
LEU
39
n
39
LEU
39
C
ARG
40
n
40
ARG
40
C
GLU
41
n
41
GLU
41
C
LYS
42
n
42
LYS
42
C
GLY
43
n
43
GLY
43
C
THR
44
n
44
THR
44
C
VAL
45
n
45
VAL
45
C
SER
46
n
46
SER
46
C
PHE
47
n
47
PHE
47
C
LYS
48
n
48
LYS
48
C
ASP
49
n
49
ASP
49
C
SER
50
n
50
SER
50
C
PHE
51
n
51
PHE
51
C
VAL
52
n
52
VAL
52
C
ARG
53
n
53
ARG
53
C
ILE
54
n
54
ILE
54
C
GLU
55
n
55
GLU
55
C
ASN
56
n
56
ASN
56
C
GLY
57
n
57
GLY
57
C
GLU
58
n
58
GLU
58
C
ALA
59
n
59
ALA
59
C
TRP
60
n
60
TRP
60
C
LEU
61
n
61
LEU
61
C
TYR
62
n
62
TYR
62
C
ASN
63
n
63
ASN
63
C
LEU
64
n
64
LEU
64
C
TYR
65
n
65
TYR
65
C
ILE
66
n
66
ILE
66
C
ALA
67
n
67
ALA
67
C
PRO
68
n
68
PRO
68
C
TYR
69
n
69
TYR
69
C
LYS
70
n
70
LYS
70
C
HIS
71
n
71
HIS
71
C
ALA
72
n
72
ALA
72
C
n
73
73
C
n
74
74
C
n
75
75
C
ASN
76
n
76
ASN
76
C
HIS
77
n
77
HIS
77
C
ASP
78
n
78
ASP
78
C
PRO
79
n
79
PRO
79
C
LEU
80
n
80
LEU
80
C
ARG
81
n
81
ARG
81
C
LYS
82
n
82
LYS
82
C
ARG
83
n
83
ARG
83
C
LYS
84
n
84
LYS
84
C
LEU
85
n
85
LEU
85
C
LEU
86
n
86
LEU
86
C
LEU
87
n
87
LEU
87
C
HIS
88
n
88
HIS
88
C
LYS
89
n
89
LYS
89
C
ARG
90
n
90
ARG
90
C
GLU
91
n
91
GLU
91
C
ILE
92
n
92
ILE
92
C
MET
93
n
93
MET
93
C
ARG
94
n
94
ARG
94
C
LEU
95
n
95
LEU
95
C
TYR
96
n
96
TYR
96
C
GLY
97
n
97
GLY
97
C
LYS
98
n
98
LYS
98
C
VAL
99
n
99
VAL
99
C
GLN
100
n
100
GLN
100
C
GLU
101
n
101
GLU
101
C
LYS
102
n
102
LYS
102
C
GLY
103
n
103
GLY
103
C
TYR
104
n
104
TYR
104
C
THR
105
n
105
THR
105
C
ILE
106
n
106
ILE
106
C
ILE
107
n
107
ILE
107
C
PRO
108
n
108
PRO
108
C
LEU
109
n
109
LEU
109
C
LYS
110
n
110
LYS
110
C
LEU
111
n
111
LEU
111
C
TYR
112
n
112
TYR
112
C
TRP
113
n
113
TRP
113
C
LYS
114
n
114
LYS
114
C
ASN
115
n
115
ASN
115
C
ASN
116
n
116
ASN
116
C
LYS
117
n
117
LYS
117
C
VAL
118
n
118
VAL
118
C
LYS
119
n
119
LYS
119
C
VAL
120
n
120
VAL
120
C
LEU
121
n
121
LEU
121
C
ILE
122
n
122
ILE
122
C
ALA
123
n
123
ALA
123
C
LEU
124
n
124
LEU
124
C
ALA
125
n
125
ALA
125
C
LYS
126
n
126
LYS
126
C
GLY
127
n
127
GLY
127
C
LYS
128
n
128
LYS
128
C
LYS
129
n
129
LYS
129
C
LEU
130
n
130
LEU
130
C
n
131
131
C
n
132
132
C
n
133
133
C
n
134
134
C
n
135
135
C
n
136
136
C
n
137
137
C
n
138
138
C
n
139
139
C
n
140
140
C
n
141
141
C
n
142
142
C
n
143
143
C
n
144
144
C
n
145
145
C
n
146
146
C
n
147
147
C
n
148
148
C
n
149
149
C
n
150
150
C
n
151
151
C
n
152
152
C
n
153
153
C
n
154
154
C
n
155
155
C
n
156
156
C
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
7
C
N
ILE
7
A
O
TRP
113
C
O
TRP
113
A
N
THR
105
C
N
THR
105
A
O
ALA
125
C
O
ALA
125
A
O
ILE
122
C
O
ILE
122
A
N
TYR
25
C
N
TYR
25
A
N
SER
46
C
N
SER
46
A
O
TYR
65
C
O
TYR
65
A
N
ARG
53
C
N
ARG
53
A
O
TRP
60
C
O
TRP
60
A
N
LEU
61
C
N
LEU
61
A
O
ARG
83
C
O
ARG
83
C
N
ILE
7
D
N
ILE
7
C
O
TRP
113
D
O
TRP
113
C
N
TYR
112
D
N
TYR
112
C
O
LYS
119
D
O
LYS
119
C
O
ILE
122
D
O
ILE
122
C
N
TYR
25
D
N
TYR
25
C
N
ASP
20
D
N
ASP
20
C
O
LYS
126
D
O
LYS
126
C
N
ARG
53
D
N
ARG
53
C
O
TRP
60
D
O
TRP
60
C
N
LEU
61
D
N
LEU
61
C
O
ARG
83
D
O
ARG
83
1
B
P
G
13
A
P
G
13
1
Y
1
B
OP1
G
13
A
OP1
G
13
1
Y
1
B
OP2
G
13
A
OP2
G
13
1
Y
1
D
P
U
16
B
P
U
16
1
Y
1
D
OP1
U
16
B
OP1
U
16
1
Y
1
D
OP2
U
16
B
OP2
U
16
1
Y
1
B
G
1
A
G
1
1
Y
1
B
G
2
A
G
2
1
Y
1
B
G
3
A
G
3
1
Y
1
B
G
4
A
G
4
1
Y
1
B
G
5
A
G
5
1
Y
1
B
C
6
A
C
6
1
Y
1
B
G
7
A
G
7
1
Y
1
B
G
8
A
G
8
1
Y
1
B
A
9
A
A
9
1
Y
1
B
A
10
A
A
10
1
Y
1
B
A
11
A
A
11
1
Y
1
B
G
12
A
G
12
1
Y
1
B
C
58
A
C
58
1
Y
1
B
G
59
A
G
59
1
Y
1
B
C
60
A
C
60
1
Y
1
B
C
61
A
C
61
1
Y
1
B
U
62
A
U
62
1
Y
1
B
C
63
A
C
63
1
Y
1
B
C
64
A
C
64
1
Y
1
B
A
65
A
A
65
1
Y
1
B
C
66
A
C
66
1
Y
1
B
C
67
A
C
67
1
Y
1
B
A
68
A
A
68
1
Y
1
D
G
1
B
G
1
1
Y
1
D
G
2
B
G
2
1
Y
1
D
G
3
B
G
3
1
Y
1
D
G
4
B
G
4
1
Y
1
D
G
5
B
G
5
1
Y
1
D
C
6
B
C
6
1
Y
1
D
G
7
B
G
7
1
Y
1
D
G
8
B
G
8
1
Y
1
D
A
9
B
A
9
1
Y
1
D
A
10
B
A
10
1
Y
1
D
A
11
B
A
11
1
Y
1
D
G
12
B
G
12
1
Y
1
D
G
13
B
G
13
1
Y
1
D
A
14
B
A
14
1
Y
1
D
U
15
B
U
15
1
Y
1
D
C
40
B
C
40
1
Y
1
D
G
41
B
G
41
1
Y
1
D
C
42
B
C
42
1
Y
1
D
G
43
B
G
43
1
Y
1
D
G
44
B
G
44
1
Y
1
D
G
45
B
G
45
1
Y
1
D
U
46
B
U
46
1
Y
1
D
U
47
B
U
47
1
Y
1
D
C
48
B
C
48
1
Y
1
D
G
49
B
G
49
1
Y
1
D
A
50
B
A
50
1
Y
1
D
U
51
B
U
51
1
Y
1
D
U
52
B
U
52
1
Y
1
D
C
53
B
C
53
1
Y
1
D
C
54
B
C
54
1
Y
1
D
C
55
B
C
55
1
Y
1
D
G
56
B
G
56
1
Y
1
D
C
57
B
C
57
1
Y
1
D
C
58
B
C
58
1
Y
1
D
G
59
B
G
59
1
Y
1
D
C
60
B
C
60
1
Y
1
D
C
61
B
C
61
1
Y
1
D
U
62
B
U
62
1
Y
1
D
C
63
B
C
63
1
Y
1
D
C
64
B
C
64
1
Y
1
D
A
65
B
A
65
1
Y
1
D
C
66
B
C
66
1
Y
1
D
C
67
B
C
67
1
Y
1
D
A
68
B
A
68
1
Y
1
A
GLY
1
C
GLY
1
1
Y
1
A
LYS
2
C
LYS
2
1
Y
1
A
THR
73
C
THR
73
1
Y
1
A
ILE
74
C
ILE
74
1
Y
1
A
GLU
75
C
GLU
75
1
Y
1
A
TYR
131
C
TYR
131
1
Y
1
A
ASP
132
C
ASP
132
1
Y
1
A
ARG
133
C
ARG
133
1
Y
1
A
ARG
134
C
ARG
134
1
Y
1
A
ARG
135
C
ARG
135
1
Y
1
A
GLU
136
C
GLU
136
1
Y
1
A
LEU
137
C
LEU
137
1
Y
1
A
LYS
138
C
LYS
138
1
Y
1
A
GLU
139
C
GLU
139
1
Y
1
A
LYS
140
C
LYS
140
1
Y
1
A
ALA
141
C
ALA
141
1
Y
1
A
MET
142
C
MET
142
1
Y
1
A
LYS
143
C
LYS
143
1
Y
1
A
ARG
144
C
ARG
144
1
Y
1
A
GLU
145
C
GLU
145
1
Y
1
A
LEU
146
C
LEU
146
1
Y
1
A
GLU
147
C
GLU
147
1
Y
1
A
ARG
148
C
ARG
148
1
Y
1
A
GLU
149
C
GLU
149
1
Y
1
A
PHE
150
C
PHE
150
1
Y
1
A
LYS
151
C
LYS
151
1
Y
1
A
GLY
152
C
GLY
152
1
Y
1
A
LYS
153
C
LYS
153
1
Y
1
A
ILE
154
C
ILE
154
1
Y
1
A
HIS
155
C
HIS
155
1
Y
1
A
LEU
156
C
LEU
156
1
Y
1
C
GLY
1
D
GLY
1
1
Y
1
C
LYS
2
D
LYS
2
1
Y
1
C
THR
73
D
THR
73
1
Y
1
C
ILE
74
D
ILE
74
1
Y
1
C
GLU
75
D
GLU
75
1
Y
1
C
TYR
131
D
TYR
131
1
Y
1
C
ASP
132
D
ASP
132
1
Y
1
C
ARG
133
D
ARG
133
1
Y
1
C
ARG
134
D
ARG
134
1
Y
1
C
ARG
135
D
ARG
135
1
Y
1
C
GLU
136
D
GLU
136
1
Y
1
C
LEU
137
D
LEU
137
1
Y
1
C
LYS
138
D
LYS
138
1
Y
1
C
GLU
139
D
GLU
139
1
Y
1
C
LYS
140
D
LYS
140
1
Y
1
C
ALA
141
D
ALA
141
1
Y
1
C
MET
142
D
MET
142
1
Y
1
C
LYS
143
D
LYS
143
1
Y
1
C
ARG
144
D
ARG
144
1
Y
1
C
GLU
145
D
GLU
145
1
Y
1
C
LEU
146
D
LEU
146
1
Y
1
C
GLU
147
D
GLU
147
1
Y
1
C
ARG
148
D
ARG
148
1
Y
1
C
GLU
149
D
GLU
149
1
Y
1
C
PHE
150
D
PHE
150
1
Y
1
C
LYS
151
D
LYS
151
1
Y
1
C
GLY
152
D
GLY
152
1
Y
1
C
LYS
153
D
LYS
153
1
Y
1
C
ILE
154
D
ILE
154
1
Y
1
C
HIS
155
D
HIS
155
1
Y
1
C
LEU
156
D
LEU
156
1
Y
1
B
U
16
0.099
SIDE CHAIN
1
B
U
28
0.067
SIDE CHAIN
1
B
C
40
0.097
SIDE CHAIN
1
D
U
28
0.072
SIDE CHAIN
1
D
U
32
0.069
SIDE CHAIN
1
8.48
1.30
114.00
122.48
B
B
B
N1
C1'
C2'
U
U
U
16
16
16
N
1
9.79
1.60
113.70
123.49
B
B
B
C2'
C3'
O3'
G
G
G
18
18
18
N
1
8.62
1.30
114.00
122.62
B
B
B
N1
C1'
C2'
C
C
C
40
40
40
N
1
17.04
2.70
111.00
128.04
A
A
A
N
CA
C
TYR
TYR
TYR
62
62
62
N
1
A
ILE
9
-122.72
-50.49
1
A
GLU
14
-64.97
47.58
1
A
ALA
15
-165.91
-10.22
1
A
ASP
20
58.42
100.07
1
A
ALA
27
-5.03
-136.79
1
A
SER
34
-29.84
-51.65
1
A
GLU
41
-61.31
0.98
1
A
LYS
42
101.75
-65.61
1
A
GLU
55
-89.80
-129.80
1
A
ASN
56
-61.40
89.45
1
A
LYS
70
-55.92
77.55
1
A
HIS
77
68.66
72.13
1
A
PRO
79
-49.55
-11.55
1
A
ARG
81
14.96
134.47
1
A
LEU
87
-146.00
12.34
1
A
HIS
88
78.00
115.73
1
A
GLN
100
-66.43
-100.89
1
A
GLU
101
-1.21
-55.70
1
A
TYR
104
-52.74
179.47
1
A
ASN
116
44.95
28.83
1
A
LYS
126
-111.91
-167.41
1
A
LYS
129
77.48
-45.00
1
C
ILE
9
-152.59
-66.47
1
C
ALA
10
-80.51
-134.06
1
C
GLU
11
105.19
120.62
1
C
ILE
21
-34.75
142.74
1
C
ALA
27
-64.68
-77.48
1
C
LYS
42
133.77
-41.74
1
C
VAL
45
-151.65
73.34
1
C
GLU
55
-108.57
-132.57
1
C
ASN
63
69.71
61.90
1
C
LYS
70
-49.82
82.09
1
C
HIS
77
76.76
103.45
1
C
PRO
79
-16.94
-40.38
1
C
ARG
81
-40.14
155.54
1
C
GLN
100
-76.84
-79.19
1
C
GLU
101
-31.03
-70.91
1
C
TYR
104
-82.85
-142.58
1
C
LYS
114
-156.69
86.26
1
C
ASN
115
66.82
60.28
1
C
LYS
126
-115.55
-159.92
1
C
LYS
129
-54.34
-94.58
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER.TOP
ION.TOP
108.4
15.09
0.00
0.00
15.09
0.00
-30.18
0.36
0.009
0.302
0.302
3.20
19.94
1647
18501
16854
9.8
94.4
RANDOM
1
GROUPED B-Factors
THROUGHOUT
0
MAD
Engh & Huber
FLAT MODEL
90.774
0.224974
0.71
0.54
5.00
0.71
0.66
3.20
19.94
0
3519
0
1465
2054
0.007
1.5
22.2
1.36
0.46
0.032
0.413
3.40
212
2332
6
8.3
87.9
3.2
50
1P6V
17756
17756
0
-3
0.07
1
23.1
6.9
98.4
3.2
3.3
2.4
0.87
7.3
100
refinement
CNS
1.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB
1
N
N
1
N
N
2
N
N
2
N
N
SmpB (chain A) and tmRNA[delta] (chain B) for the ribonucleoprotein complex
SmpB (chain C) and tmRNA[delta] (chain D) for the ribonucleoprotein complex; poorer defined in electron density
A
LYS
32
C
LYS
32
HELX_P
A
GLU
41
C
GLU
41
1
1
10
A
HIS
88
C
HIS
88
HELX_P
A
GLY
103
C
GLY
103
1
2
16
C
ASN
12
D
ASN
12
HELX_P
C
ALA
17
D
ALA
17
1
3
6
C
LYS
32
D
LYS
32
HELX_P
C
LYS
42
D
LYS
42
1
4
11
C
HIS
88
D
HIS
88
HELX_P
C
LYS
102
D
LYS
102
1
5
15
hydrog
A-G MISPAIR
B
A
19
A
N1
A
19
1_555
B
G
38
A
N2
G
38
1_555
hydrog
WATSON-CRICK
B
C
20
A
N3
C
20
1_555
B
G
37
A
N1
G
37
1_555
hydrog
WATSON-CRICK
B
C
20
A
N4
C
20
1_555
B
G
37
A
O6
G
37
1_555
hydrog
WATSON-CRICK
B
C
20
A
O2
C
20
1_555
B
G
37
A
N2
G
37
1_555
hydrog
C-G PAIR
B
C
20
A
N3
C
20
1_555
B
G
38
A
N2
G
38
1_555
hydrog
WATSON-CRICK
B
G
21
A
N1
G
21
1_555
B
C
36
A
N3
C
36
1_555
hydrog
WATSON-CRICK
B
G
21
A
N2
G
21
1_555
B
C
36
A
O2
C
36
1_555
hydrog
WATSON-CRICK
B
G
21
A
O6
G
21
1_555
B
C
36
A
N4
C
36
1_555
hydrog
TYPE_28_PAIR
B
G
22
A
N1
G
22
1_555
B
U
35
A
O2
U
35
1_555
hydrog
TYPE_28_PAIR
B
G
22
A
O6
G
22
1_555
B
U
35
A
N3
U
35
1_555
hydrog
WATSON-CRICK
B
G
23
A
N1
G
23
1_555
B
C
34
A
N3
C
34
1_555
hydrog
WATSON-CRICK
B
G
23
A
N2
G
23
1_555
B
C
34
A
O2
C
34
1_555
hydrog
WATSON-CRICK
B
G
23
A
O6
G
23
1_555
B
C
34
A
N4
C
34
1_555
hydrog
G-C PAIR
B
G
24
A
N1
G
24
1_555
B
C
33
A
N3
C
33
1_555
hydrog
WATSON-CRICK
B
A
25
A
N1
A
25
1_555
B
U
32
A
N3
U
32
1_555
hydrog
WATSON-CRICK
B
A
25
A
N6
A
25
1_555
B
U
32
A
O4
U
32
1_555
hydrog
WATSON-CRICK
B
C
26
A
N3
C
26
1_555
B
G
31
A
N1
G
31
1_555
hydrog
WATSON-CRICK
B
C
26
A
N4
C
26
1_555
B
G
31
A
O6
G
31
1_555
hydrog
WATSON-CRICK
B
C
26
A
O2
C
26
1_555
B
G
31
A
N2
G
31
1_555
hydrog
WATSON-CRICK
B
G
41
A
N1
G
41
1_555
B
C
57
A
N3
C
57
1_555
hydrog
WATSON-CRICK
B
G
41
A
N2
G
41
1_555
B
C
57
A
O2
C
57
1_555
hydrog
WATSON-CRICK
B
G
41
A
O6
G
41
1_555
B
C
57
A
N4
C
57
1_555
hydrog
C-G PAIR
B
C
42
A
N4
C
42
1_555
B
G
56
A
O6
G
56
1_555
hydrog
WATSON-CRICK
B
G
43
A
N1
G
43
1_555
B
C
55
A
N3
C
55
1_555
hydrog
WATSON-CRICK
B
G
43
A
N2
G
43
1_555
B
C
55
A
O2
C
55
1_555
hydrog
WATSON-CRICK
B
G
43
A
O6
G
43
1_555
B
C
55
A
N4
C
55
1_555
hydrog
WATSON-CRICK
B
G
44
A
N1
G
44
1_555
B
C
54
A
N3
C
54
1_555
hydrog
WATSON-CRICK
B
G
44
A
N2
G
44
1_555
B
C
54
A
O2
C
54
1_555
hydrog
WATSON-CRICK
B
G
44
A
O6
G
44
1_555
B
C
54
A
N4
C
54
1_555
hydrog
G-C PAIR
B
G
45
A
N1
G
45
1_555
B
C
53
A
N3
C
53
1_555
hydrog
U-A PAIR
B
U
46
A
N3
U
46
1_555
B
A
50
A
N1
A
50
1_555
hydrog
A-C MISPAIR
B
A
50
A
N6
A
50
1_555
B
C
53
A
O2
C
53
1_555
hydrog
A-G MISPAIR
D
A
19
B
N6
A
19
1_555
D
G
38
B
N3
G
38
1_555
hydrog
WATSON-CRICK
D
C
20
B
N3
C
20
1_555
D
G
37
B
N1
G
37
1_555
hydrog
WATSON-CRICK
D
C
20
B
N4
C
20
1_555
D
G
37
B
O6
G
37
1_555
hydrog
WATSON-CRICK
D
C
20
B
O2
C
20
1_555
D
G
37
B
N2
G
37
1_555
hydrog
C-G PAIR
D
C
20
B
N3
C
20
1_555
D
G
38
B
N2
G
38
1_555
hydrog
WATSON-CRICK
D
G
21
B
N1
G
21
1_555
D
C
36
B
N3
C
36
1_555
hydrog
WATSON-CRICK
D
G
21
B
N2
G
21
1_555
D
C
36
B
O2
C
36
1_555
hydrog
WATSON-CRICK
D
G
21
B
O6
G
21
1_555
D
C
36
B
N4
C
36
1_555
hydrog
TYPE_28_PAIR
D
G
22
B
N1
G
22
1_555
D
U
35
B
O2
U
35
1_555
hydrog
TYPE_28_PAIR
D
G
22
B
O6
G
22
1_555
D
U
35
B
N3
U
35
1_555
hydrog
WATSON-CRICK
D
G
23
B
N1
G
23
1_555
D
C
34
B
N3
C
34
1_555
hydrog
WATSON-CRICK
D
G
23
B
N2
G
23
1_555
D
C
34
B
O2
C
34
1_555
hydrog
WATSON-CRICK
D
G
23
B
O6
G
23
1_555
D
C
34
B
N4
C
34
1_555
hydrog
G-C PAIR
D
G
24
B
N1
G
24
1_555
D
C
33
B
N3
C
33
1_555
hydrog
WATSON-CRICK
D
A
25
B
N1
A
25
1_555
D
U
32
B
N3
U
32
1_555
hydrog
WATSON-CRICK
D
A
25
B
N6
A
25
1_555
D
U
32
B
O4
U
32
1_555
hydrog
WATSON-CRICK
D
C
26
B
N3
C
26
1_555
D
G
31
B
N1
G
31
1_555
hydrog
WATSON-CRICK
D
C
26
B
N4
C
26
1_555
D
G
31
B
O6
G
31
1_555
hydrog
WATSON-CRICK
D
C
26
B
O2
C
26
1_555
D
G
31
B
N2
G
31
1_555
RNA BINDING PROTEIN/RNA
SmpB, tmRNA, trans-translation, protein-RNA complex, RNA BINDING PROTEIN-RNA COMPLEX
SSRP_AQUAE
UNP
2
2
O66640
1P6V
PDB
1
1P6V
2
157
1P6V
1
156
O66640
A
1
1
156
2
157
1P6V
1
156
O66640
C
1
1
156
1
68
1P6V
1
68
1P6V
B
2
1
68
1
68
1P6V
1
68
1P6V
D
2
1
68
4
2
3
4
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
6
C
ILE
6
A
GLU
11
C
GLU
11
A
THR
105
C
THR
105
A
LYS
114
C
LYS
114
A
VAL
118
C
VAL
118
A
ALA
125
C
ALA
125
A
ILE
21
C
ILE
21
A
GLU
26
C
GLU
26
A
VAL
45
C
VAL
45
A
SER
46
C
SER
46
A
TYR
65
C
TYR
65
A
ILE
66
C
ILE
66
A
VAL
52
C
VAL
52
A
ARG
53
C
ARG
53
A
TRP
60
C
TRP
60
A
LEU
61
C
LEU
61
A
ARG
83
C
ARG
83
A
LYS
84
C
LYS
84
C
ILE
6
D
ILE
6
C
PRO
8
D
PRO
8
C
PRO
108
D
PRO
108
C
LYS
114
D
LYS
114
C
VAL
118
D
VAL
118
C
ALA
123
D
ALA
123
C
THR
24
D
THR
24
C
GLU
26
D
GLU
26
C
TYR
19
D
TYR
19
C
ASP
20
D
ASP
20
C
LYS
126
D
LYS
126
C
GLY
127
D
GLY
127
C
PHE
51
D
PHE
51
C
ILE
54
D
ILE
54
C
ALA
59
D
ALA
59
C
TYR
62
D
TYR
62
C
ARG
83
D
ARG
83
C
LYS
84
D
LYS
84
96
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