0.010032 0.000000 0.000000 0.000000 0.010032 0.000000 0.000000 0.000000 0.004830 0.00000 0.00000 0.00000 Gutmann, S. Haebel, P.W. Metzinger, L. Sutter, M. Felden, B. Ban, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 99.680 99.680 207.050 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N P N 148 N O N 149 N O N 150 N O N 151 N C N 152 R C N 153 N O N 154 S C N 155 N O N 156 R C N 157 N O N 158 R C Y 159 N N Y 160 N C Y 161 N N Y 162 N C N 163 N C N 164 N O N 165 N N N 166 N C N 167 N N N 168 N N Y 169 N C N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N O N 192 N N N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 N C N 209 N C N 210 N C N 211 N O N 212 N O N 213 N O N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N N N 224 N C N 225 N C N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N N N 234 S C N 235 N C N 236 N O N 237 N C Y 238 N C Y 239 N N Y 240 N C Y 241 N C Y 242 N N N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 S C N 259 N C N 260 N C N 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N C N 282 N C N 283 N C N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C N 303 N C N 304 N C N 305 N C N 306 N N N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C N 328 N C N 329 N S N 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C Y 348 N C Y 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C N 371 N C N 372 N C N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N O N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 R C N 402 N O N 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 N C Y 419 N C Y 420 N C Y 421 N C Y 422 N N Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N N N 442 S C N 443 N C N 444 N O N 445 N C Y 446 N C Y 447 N C Y 448 N C Y 449 N C Y 450 N C Y 451 N C N 452 N O N 453 N O N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N O N 466 N P N 467 N O N 468 N O N 469 N O N 470 N C N 471 R C N 472 N O N 473 S C N 474 N O N 475 R C N 476 N O N 477 R C N 478 N N N 479 N C N 480 N O N 481 N N N 482 N C N 483 N O N 484 N C N 485 N C N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N N N 500 S C N 501 N C N 502 N O N 503 N C N 504 N C N 505 N C N 506 N O N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing Y 169 N sing Y 170 N sing Y 171 N doub N 172 N sing Y 173 N sing N 174 N sing Y 175 N doub N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing Y 242 N sing Y 243 N doub Y 244 N doub N 245 N sing Y 246 N sing N 247 N sing Y 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing Y 348 N doub Y 349 N sing Y 350 N sing N 351 N sing Y 352 N doub N 353 N sing Y 354 N doub N 355 N sing Y 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing Y 417 N doub Y 418 N sing Y 419 N sing N 420 N sing Y 421 N doub Y 422 N sing Y 423 N sing N 424 N sing Y 425 N sing Y 426 N doub N 427 N sing Y 428 N doub N 429 N sing Y 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N doub N 441 N sing N 442 N sing N 443 N sing N 444 N sing Y 445 N doub Y 446 N sing Y 447 N sing N 448 N sing Y 449 N doub N 450 N sing Y 451 N doub N 452 N sing Y 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N doub N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N doub N 485 N sing N 486 N sing N 487 N sing N 488 N doub N 489 N sing N 490 N doub N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N doub N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing UK Nature NATUAS 0006 0028-0836 424 699 703 10.1038/nature01831 12904796 Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB 2003 10.2210/pdb1p6v/pdb pdb_00001p6v 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-11-12 MARRESEARCH Si 111 SINGLE WAVELENGTH M x-ray 1 1.008 1.0 X06SA SLS 1.008 SYNCHROTRON SLS BEAMLINE X06SA 21959.070 45-MER 2 syn polymer 18440.818 SsrA-binding protein 2 man polymer no no GGGGGCGGAAAGGAUUCGACGGGGACUUCGGUCCUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA GGGGGCGGAAAGGAUUCGACGGGGACUUCGGUCCUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA B,D polyribonucleotide no no GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPL RKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGKIHL GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPL RKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGKIHL A,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Aquifex Escherichia sample SMPB 63363 Aquifex aeolicus 562 Escherichia coli 1 5.22 76.25 VAPOR DIFFUSION, SITTING DROP 6.8 Isopropanol, cacodylate, ammonium acetate, magnesium acetate, calcium acetate, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 Isopropanol 1 cacodylate 1 ammonium acetate 1 magnesium acetate 1 calcium acetate 1 H2O 1 cacodylate 2 magnesium acetate 2 calcium acetate 2 H2O 2 -27.254 B 19 B 38 -1.519 B_A19:G38_B 1 -3.490 -4.597 -1.644 0.226 4.763 1 19 B 20 B 37 0.520 B_C20:G37_B 2 -2.982 -0.144 -0.746 -0.159 2.686 1 19 B 21 B 36 3.683 B_G21:C36_B 3 -10.732 -0.858 -0.236 -0.279 -11.030 28 B 22 B 35 5.067 B_G22:U35_B 4 -19.048 -2.349 -0.906 -0.689 -6.971 1 19 B 23 B 34 3.337 B_G23:C34_B 5 -8.374 -0.194 0.132 -0.237 9.785 1 B 24 B 33 10.835 B_G24:C33_B 6 -2.689 -0.346 0.554 0.168 25.038 1 20 B 25 B 32 6.227 B_A25:U32_B 7 3.676 -0.588 0.490 0.208 3.994 1 19 B 26 B 31 6.607 B_C26:G31_B 8 10.411 1.211 0.464 -0.419 -1.216 1 19 B 41 B 57 -14.399 B_G41:C57_B 9 -27.023 0.373 1.431 -0.188 -18.500 B 42 B 56 -15.307 B_C42:G56_B 10 -17.415 2.060 0.523 -0.554 14.300 1 19 B 43 B 55 -2.954 B_G43:C55_B 11 -1.154 -0.305 0.836 0.161 4.309 1 19 B 44 B 54 -12.734 B_G44:C54_B 12 -6.907 -1.043 0.043 -0.478 -26.641 1 B 45 B 53 -18.915 B_G45:C53_B 13 -8.354 1.304 -1.339 -0.214 6.215 2 B 46 B 50 165.483 B_U46:A50_B 14 30.474 0.225 0.489 1.735 -28.883 D 19 D 38 -7.206 D_A19:G38_D 15 9.993 -5.737 -2.018 -0.819 4.430 1 19 D 20 D 37 0.858 D_C20:G37_D 16 -2.675 -0.165 -0.754 -0.164 1.559 1 19 D 21 D 36 3.681 D_G21:C36_D 17 -10.615 -0.862 -0.290 -0.290 -12.175 28 D 22 D 35 5.065 D_G22:U35_D 18 -18.649 -2.348 -1.006 -0.694 -7.174 1 19 D 23 D 34 3.490 D_G23:C34_D 19 -7.519 -0.203 0.125 -0.234 12.342 1 D 24 D 33 10.678 D_G24:C33_D 20 -1.708 -0.345 0.648 0.177 26.574 1 20 D 25 D 32 5.975 D_A25:U32_D 21 3.626 -0.600 0.562 0.229 4.218 1 19 D 26 D 31 6.515 D_C26:G31_D 22 11.142 1.197 0.478 -0.411 2.722 45.214 B B 19 20 5.115 B B 38 37 2.686 3.870 -0.484 0.269 BB_A19C20:G37G38_BB 1 -13.918 18.394 42.959 0.057 -0.427 2.246 32.306 B B 20 21 24.994 B B 37 36 3.106 13.455 0.264 -1.279 BB_C20G21:C36G37_BB 2 -4.578 8.505 29.087 -4.360 -1.175 1.908 34.713 B B 21 22 33.718 B B 36 35 3.334 19.034 0.330 -1.712 BB_G21G22:U35C36_BB 3 3.197 -5.663 28.991 -5.433 -0.123 3.331 38.422 B B 22 23 0.709 B B 35 34 3.408 0.464 0.030 -0.943 BB_G22G23:C34U35_BB 4 -7.446 11.381 37.718 -1.494 -1.011 2.542 28.108 B B 23 24 3.225 B B 34 33 2.598 1.565 1.328 -2.122 BB_G23G24:C33C34_BB 5 1.444 -2.976 28.029 -4.658 -2.468 2.498 22.465 B B 24 25 4.736 B B 33 32 2.649 1.839 -0.860 -2.808 BB_G24A25:U32C33_BB 6 -2.791 7.191 22.219 -7.743 1.392 3.148 42.275 B B 25 26 16.642 B B 32 31 3.737 11.846 -0.472 -1.773 BB_A25C26:G31U32_BB 7 -3.056 4.294 40.544 -3.766 0.318 3.933 47.100 B B 41 42 0.061 B B 57 56 3.983 0.049 -1.148 -2.298 BB_G41C42:G56C57_BB 8 1.950 -2.440 47.062 -2.881 1.630 1.139 19.315 B B 42 43 17.303 B B 56 55 1.974 5.683 0.598 -2.035 BB_C42G43:C55G56_BB 9 -3.769 11.477 18.082 -7.463 -2.708 1.566 27.571 B B 43 44 28.709 B B 55 54 3.240 13.036 0.549 -2.861 BB_G43G44:C54C55_BB 10 5.915 -13.027 23.625 -8.532 -0.005 3.799 48.495 B B 44 45 12.194 B B 54 53 4.377 9.935 -0.553 -2.151 BB_G44G45:C53C54_BB 11 5.280 -6.480 47.248 -3.592 1.190 1.497 -63.370 B B 45 46 28.243 B B 53 50 2.268 -28.599 1.225 -1.813 BB_G45U46:A50C53_BB 12 -12.966 -12.805 -55.760 2.512 0.809 2.606 52.058 D D 19 20 -4.622 D D 38 37 2.624 -4.021 -0.375 0.407 DD_A19C20:G37G38_DD 13 -12.128 13.942 50.572 0.682 -0.230 2.278 32.169 D D 20 21 24.489 D D 37 36 3.112 13.142 0.241 -1.265 DD_C20G21:C36G37_DD 14 -4.676 8.714 29.060 -4.322 -1.161 1.934 34.787 D D 21 22 33.965 D D 36 35 3.372 19.192 0.334 -1.699 DD_G21G22:U35C36_DD 15 3.527 -6.242 28.940 -5.452 -0.078 3.299 38.648 D D 22 23 0.476 D D 35 34 3.383 0.313 0.030 -0.919 DD_G22G23:C34U35_DD 16 -8.147 12.396 37.811 -1.429 -1.081 2.493 28.024 D D 23 24 1.596 D D 34 33 2.518 0.773 1.342 -2.149 DD_G23G24:C33C34_DD 17 0.746 -1.541 28.004 -4.579 -2.636 2.515 22.352 D D 24 25 3.714 D D 33 32 2.628 1.436 -0.839 -2.862 DD_G24A25:U32C33_DD 18 -2.399 6.204 22.179 -7.804 1.457 3.099 42.523 D D 25 26 17.466 D D 32 31 3.740 12.491 -0.471 -1.809 DD_A25C26:G31U32_DD 19 -2.249 3.145 40.668 -3.849 0.406 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 2003-08-12 1 1 2008-04-29 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2003-04-30 REL REL In vitro transcription of Aquifex aeolicus tmRNA[delta] sample n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B n 9 9 B n 10 10 B n 11 11 B n 12 12 B G 13 n 13 G 13 B A 14 n 14 A 14 B U 15 n 15 U 15 B U 16 n 16 U 16 B C 17 n 17 C 17 B G 18 n 18 G 18 B A 19 n 19 A 19 B C 20 n 20 C 20 B G 21 n 21 G 21 B G 22 n 22 G 22 B G 23 n 23 G 23 B G 24 n 24 G 24 B A 25 n 25 A 25 B C 26 n 26 C 26 B U 27 n 27 U 27 B U 28 n 28 U 28 B C 29 n 29 C 29 B G 30 n 30 G 30 B G 31 n 31 G 31 B U 32 n 32 U 32 B C 33 n 33 C 33 B C 34 n 34 C 34 B U 35 n 35 U 35 B C 36 n 36 C 36 B G 37 n 37 G 37 B G 38 n 38 G 38 B A 39 n 39 A 39 B C 40 n 40 C 40 B G 41 n 41 G 41 B C 42 n 42 C 42 B G 43 n 43 G 43 B G 44 n 44 G 44 B G 45 n 45 G 45 B U 46 n 46 U 46 B U 47 n 47 U 47 B C 48 n 48 C 48 B G 49 n 49 G 49 B A 50 n 50 A 50 B U 51 n 51 U 51 B U 52 n 52 U 52 B C 53 n 53 C 53 B C 54 n 54 C 54 B C 55 n 55 C 55 B G 56 n 56 G 56 B C 57 n 57 C 57 B n 58 58 B n 59 59 B n 60 60 B n 61 61 B n 62 62 B n 63 63 B n 64 64 B n 65 65 B n 66 66 B n 67 67 B n 68 68 B n 1 1 D n 2 2 D n 3 3 D n 4 4 D n 5 5 D n 6 6 D n 7 7 D n 8 8 D n 9 9 D n 10 10 D n 11 11 D n 12 12 D n 13 13 D n 14 14 D n 15 15 D U 16 n 16 U 16 D C 17 n 17 C 17 D G 18 n 18 G 18 D A 19 n 19 A 19 D C 20 n 20 C 20 D G 21 n 21 G 21 D G 22 n 22 G 22 D G 23 n 23 G 23 D G 24 n 24 G 24 D A 25 n 25 A 25 D C 26 n 26 C 26 D U 27 n 27 U 27 D U 28 n 28 U 28 D C 29 n 29 C 29 D G 30 n 30 G 30 D G 31 n 31 G 31 D U 32 n 32 U 32 D C 33 n 33 C 33 D C 34 n 34 C 34 D U 35 n 35 U 35 D C 36 n 36 C 36 D G 37 n 37 G 37 D G 38 n 38 G 38 D A 39 n 39 A 39 D n 40 40 D n 41 41 D n 42 42 D n 43 43 D n 44 44 D n 45 45 D n 46 46 D n 47 47 D n 48 48 D n 49 49 D n 50 50 D n 51 51 D n 52 52 D n 53 53 D n 54 54 D n 55 55 D n 56 56 D n 57 57 D n 58 58 D n 59 59 D n 60 60 D n 61 61 D n 62 62 D n 63 63 D n 64 64 D n 65 65 D n 66 66 D n 67 67 D n 68 68 D n 1 1 A n 2 2 A SER 3 n 3 SER 3 A ASP 4 n 4 ASP 4 A LYS 5 n 5 LYS 5 A ILE 6 n 6 ILE 6 A ILE 7 n 7 ILE 7 A PRO 8 n 8 PRO 8 A ILE 9 n 9 ILE 9 A ALA 10 n 10 ALA 10 A GLU 11 n 11 GLU 11 A ASN 12 n 12 ASN 12 A LYS 13 n 13 LYS 13 A GLU 14 n 14 GLU 14 A ALA 15 n 15 ALA 15 A LYS 16 n 16 LYS 16 A ALA 17 n 17 ALA 17 A LYS 18 n 18 LYS 18 A TYR 19 n 19 TYR 19 A ASP 20 n 20 ASP 20 A ILE 21 n 21 ILE 21 A LEU 22 n 22 LEU 22 A GLU 23 n 23 GLU 23 A THR 24 n 24 THR 24 A TYR 25 n 25 TYR 25 A GLU 26 n 26 GLU 26 A ALA 27 n 27 ALA 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A VAL 30 n 30 VAL 30 A LEU 31 n 31 LEU 31 A LYS 32 n 32 LYS 32 A GLY 33 n 33 GLY 33 A SER 34 n 34 SER 34 A GLU 35 n 35 GLU 35 A VAL 36 n 36 VAL 36 A LYS 37 n 37 LYS 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ARG 40 n 40 ARG 40 A GLU 41 n 41 GLU 41 A LYS 42 n 42 LYS 42 A GLY 43 n 43 GLY 43 A THR 44 n 44 THR 44 A VAL 45 n 45 VAL 45 A SER 46 n 46 SER 46 A PHE 47 n 47 PHE 47 A LYS 48 n 48 LYS 48 A ASP 49 n 49 ASP 49 A SER 50 n 50 SER 50 A PHE 51 n 51 PHE 51 A VAL 52 n 52 VAL 52 A ARG 53 n 53 ARG 53 A ILE 54 n 54 ILE 54 A GLU 55 n 55 GLU 55 A ASN 56 n 56 ASN 56 A GLY 57 n 57 GLY 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A TRP 60 n 60 TRP 60 A LEU 61 n 61 LEU 61 A TYR 62 n 62 TYR 62 A ASN 63 n 63 ASN 63 A LEU 64 n 64 LEU 64 A TYR 65 n 65 TYR 65 A ILE 66 n 66 ILE 66 A ALA 67 n 67 ALA 67 A PRO 68 n 68 PRO 68 A TYR 69 n 69 TYR 69 A LYS 70 n 70 LYS 70 A HIS 71 n 71 HIS 71 A ALA 72 n 72 ALA 72 A n 73 73 A n 74 74 A n 75 75 A ASN 76 n 76 ASN 76 A HIS 77 n 77 HIS 77 A ASP 78 n 78 ASP 78 A PRO 79 n 79 PRO 79 A LEU 80 n 80 LEU 80 A ARG 81 n 81 ARG 81 A LYS 82 n 82 LYS 82 A ARG 83 n 83 ARG 83 A LYS 84 n 84 LYS 84 A LEU 85 n 85 LEU 85 A LEU 86 n 86 LEU 86 A LEU 87 n 87 LEU 87 A HIS 88 n 88 HIS 88 A LYS 89 n 89 LYS 89 A ARG 90 n 90 ARG 90 A GLU 91 n 91 GLU 91 A ILE 92 n 92 ILE 92 A MET 93 n 93 MET 93 A ARG 94 n 94 ARG 94 A LEU 95 n 95 LEU 95 A TYR 96 n 96 TYR 96 A GLY 97 n 97 GLY 97 A LYS 98 n 98 LYS 98 A VAL 99 n 99 VAL 99 A GLN 100 n 100 GLN 100 A GLU 101 n 101 GLU 101 A LYS 102 n 102 LYS 102 A GLY 103 n 103 GLY 103 A TYR 104 n 104 TYR 104 A THR 105 n 105 THR 105 A ILE 106 n 106 ILE 106 A ILE 107 n 107 ILE 107 A PRO 108 n 108 PRO 108 A LEU 109 n 109 LEU 109 A LYS 110 n 110 LYS 110 A LEU 111 n 111 LEU 111 A TYR 112 n 112 TYR 112 A TRP 113 n 113 TRP 113 A LYS 114 n 114 LYS 114 A ASN 115 n 115 ASN 115 A ASN 116 n 116 ASN 116 A LYS 117 n 117 LYS 117 A VAL 118 n 118 VAL 118 A LYS 119 n 119 LYS 119 A VAL 120 n 120 VAL 120 A LEU 121 n 121 LEU 121 A ILE 122 n 122 ILE 122 A ALA 123 n 123 ALA 123 A LEU 124 n 124 LEU 124 A ALA 125 n 125 ALA 125 A LYS 126 n 126 LYS 126 A GLY 127 n 127 GLY 127 A LYS 128 n 128 LYS 128 A LYS 129 n 129 LYS 129 A LEU 130 n 130 LEU 130 A n 131 131 A n 132 132 A n 133 133 A n 134 134 A n 135 135 A n 136 136 A n 137 137 A n 138 138 A n 139 139 A n 140 140 A n 141 141 A n 142 142 A n 143 143 A n 144 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 149 149 A n 150 150 A n 151 151 A n 152 152 A n 153 153 A n 154 154 A n 155 155 A n 156 156 A n 1 1 C n 2 2 C SER 3 n 3 SER 3 C ASP 4 n 4 ASP 4 C LYS 5 n 5 LYS 5 C ILE 6 n 6 ILE 6 C ILE 7 n 7 ILE 7 C PRO 8 n 8 PRO 8 C ILE 9 n 9 ILE 9 C ALA 10 n 10 ALA 10 C GLU 11 n 11 GLU 11 C ASN 12 n 12 ASN 12 C LYS 13 n 13 LYS 13 C GLU 14 n 14 GLU 14 C ALA 15 n 15 ALA 15 C LYS 16 n 16 LYS 16 C ALA 17 n 17 ALA 17 C LYS 18 n 18 LYS 18 C TYR 19 n 19 TYR 19 C ASP 20 n 20 ASP 20 C ILE 21 n 21 ILE 21 C LEU 22 n 22 LEU 22 C GLU 23 n 23 GLU 23 C THR 24 n 24 THR 24 C TYR 25 n 25 TYR 25 C GLU 26 n 26 GLU 26 C ALA 27 n 27 ALA 27 C GLY 28 n 28 GLY 28 C ILE 29 n 29 ILE 29 C VAL 30 n 30 VAL 30 C LEU 31 n 31 LEU 31 C LYS 32 n 32 LYS 32 C GLY 33 n 33 GLY 33 C SER 34 n 34 SER 34 C GLU 35 n 35 GLU 35 C VAL 36 n 36 VAL 36 C LYS 37 n 37 LYS 37 C SER 38 n 38 SER 38 C LEU 39 n 39 LEU 39 C ARG 40 n 40 ARG 40 C GLU 41 n 41 GLU 41 C LYS 42 n 42 LYS 42 C GLY 43 n 43 GLY 43 C THR 44 n 44 THR 44 C VAL 45 n 45 VAL 45 C SER 46 n 46 SER 46 C PHE 47 n 47 PHE 47 C LYS 48 n 48 LYS 48 C ASP 49 n 49 ASP 49 C SER 50 n 50 SER 50 C PHE 51 n 51 PHE 51 C VAL 52 n 52 VAL 52 C ARG 53 n 53 ARG 53 C ILE 54 n 54 ILE 54 C GLU 55 n 55 GLU 55 C ASN 56 n 56 ASN 56 C GLY 57 n 57 GLY 57 C GLU 58 n 58 GLU 58 C ALA 59 n 59 ALA 59 C TRP 60 n 60 TRP 60 C LEU 61 n 61 LEU 61 C TYR 62 n 62 TYR 62 C ASN 63 n 63 ASN 63 C LEU 64 n 64 LEU 64 C TYR 65 n 65 TYR 65 C ILE 66 n 66 ILE 66 C ALA 67 n 67 ALA 67 C PRO 68 n 68 PRO 68 C TYR 69 n 69 TYR 69 C LYS 70 n 70 LYS 70 C HIS 71 n 71 HIS 71 C ALA 72 n 72 ALA 72 C n 73 73 C n 74 74 C n 75 75 C ASN 76 n 76 ASN 76 C HIS 77 n 77 HIS 77 C ASP 78 n 78 ASP 78 C PRO 79 n 79 PRO 79 C LEU 80 n 80 LEU 80 C ARG 81 n 81 ARG 81 C LYS 82 n 82 LYS 82 C ARG 83 n 83 ARG 83 C LYS 84 n 84 LYS 84 C LEU 85 n 85 LEU 85 C LEU 86 n 86 LEU 86 C LEU 87 n 87 LEU 87 C HIS 88 n 88 HIS 88 C LYS 89 n 89 LYS 89 C ARG 90 n 90 ARG 90 C GLU 91 n 91 GLU 91 C ILE 92 n 92 ILE 92 C MET 93 n 93 MET 93 C ARG 94 n 94 ARG 94 C LEU 95 n 95 LEU 95 C TYR 96 n 96 TYR 96 C GLY 97 n 97 GLY 97 C LYS 98 n 98 LYS 98 C VAL 99 n 99 VAL 99 C GLN 100 n 100 GLN 100 C GLU 101 n 101 GLU 101 C LYS 102 n 102 LYS 102 C GLY 103 n 103 GLY 103 C TYR 104 n 104 TYR 104 C THR 105 n 105 THR 105 C ILE 106 n 106 ILE 106 C ILE 107 n 107 ILE 107 C PRO 108 n 108 PRO 108 C LEU 109 n 109 LEU 109 C LYS 110 n 110 LYS 110 C LEU 111 n 111 LEU 111 C TYR 112 n 112 TYR 112 C TRP 113 n 113 TRP 113 C LYS 114 n 114 LYS 114 C ASN 115 n 115 ASN 115 C ASN 116 n 116 ASN 116 C LYS 117 n 117 LYS 117 C VAL 118 n 118 VAL 118 C LYS 119 n 119 LYS 119 C VAL 120 n 120 VAL 120 C LEU 121 n 121 LEU 121 C ILE 122 n 122 ILE 122 C ALA 123 n 123 ALA 123 C LEU 124 n 124 LEU 124 C ALA 125 n 125 ALA 125 C LYS 126 n 126 LYS 126 C GLY 127 n 127 GLY 127 C LYS 128 n 128 LYS 128 C LYS 129 n 129 LYS 129 C LEU 130 n 130 LEU 130 C n 131 131 C n 132 132 C n 133 133 C n 134 134 C n 135 135 C n 136 136 C n 137 137 C n 138 138 C n 139 139 C n 140 140 C n 141 141 C n 142 142 C n 143 143 C n 144 144 C n 145 145 C n 146 146 C n 147 147 C n 148 148 C n 149 149 C n 150 150 C n 151 151 C n 152 152 C n 153 153 C n 154 154 C n 155 155 C n 156 156 C author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 7 C N ILE 7 A O TRP 113 C O TRP 113 A N THR 105 C N THR 105 A O ALA 125 C O ALA 125 A O ILE 122 C O ILE 122 A N TYR 25 C N TYR 25 A N SER 46 C N SER 46 A O TYR 65 C O TYR 65 A N ARG 53 C N ARG 53 A O TRP 60 C O TRP 60 A N LEU 61 C N LEU 61 A O ARG 83 C O ARG 83 C N ILE 7 D N ILE 7 C O TRP 113 D O TRP 113 C N TYR 112 D N TYR 112 C O LYS 119 D O LYS 119 C O ILE 122 D O ILE 122 C N TYR 25 D N TYR 25 C N ASP 20 D N ASP 20 C O LYS 126 D O LYS 126 C N ARG 53 D N ARG 53 C O TRP 60 D O TRP 60 C N LEU 61 D N LEU 61 C O ARG 83 D O ARG 83 1 B P G 13 A P G 13 1 Y 1 B OP1 G 13 A OP1 G 13 1 Y 1 B OP2 G 13 A OP2 G 13 1 Y 1 D P U 16 B P U 16 1 Y 1 D OP1 U 16 B OP1 U 16 1 Y 1 D OP2 U 16 B OP2 U 16 1 Y 1 B G 1 A G 1 1 Y 1 B G 2 A G 2 1 Y 1 B G 3 A G 3 1 Y 1 B G 4 A G 4 1 Y 1 B G 5 A G 5 1 Y 1 B C 6 A C 6 1 Y 1 B G 7 A G 7 1 Y 1 B G 8 A G 8 1 Y 1 B A 9 A A 9 1 Y 1 B A 10 A A 10 1 Y 1 B A 11 A A 11 1 Y 1 B G 12 A G 12 1 Y 1 B C 58 A C 58 1 Y 1 B G 59 A G 59 1 Y 1 B C 60 A C 60 1 Y 1 B C 61 A C 61 1 Y 1 B U 62 A U 62 1 Y 1 B C 63 A C 63 1 Y 1 B C 64 A C 64 1 Y 1 B A 65 A A 65 1 Y 1 B C 66 A C 66 1 Y 1 B C 67 A C 67 1 Y 1 B A 68 A A 68 1 Y 1 D G 1 B G 1 1 Y 1 D G 2 B G 2 1 Y 1 D G 3 B G 3 1 Y 1 D G 4 B G 4 1 Y 1 D G 5 B G 5 1 Y 1 D C 6 B C 6 1 Y 1 D G 7 B G 7 1 Y 1 D G 8 B G 8 1 Y 1 D A 9 B A 9 1 Y 1 D A 10 B A 10 1 Y 1 D A 11 B A 11 1 Y 1 D G 12 B G 12 1 Y 1 D G 13 B G 13 1 Y 1 D A 14 B A 14 1 Y 1 D U 15 B U 15 1 Y 1 D C 40 B C 40 1 Y 1 D G 41 B G 41 1 Y 1 D C 42 B C 42 1 Y 1 D G 43 B G 43 1 Y 1 D G 44 B G 44 1 Y 1 D G 45 B G 45 1 Y 1 D U 46 B U 46 1 Y 1 D U 47 B U 47 1 Y 1 D C 48 B C 48 1 Y 1 D G 49 B G 49 1 Y 1 D A 50 B A 50 1 Y 1 D U 51 B U 51 1 Y 1 D U 52 B U 52 1 Y 1 D C 53 B C 53 1 Y 1 D C 54 B C 54 1 Y 1 D C 55 B C 55 1 Y 1 D G 56 B G 56 1 Y 1 D C 57 B C 57 1 Y 1 D C 58 B C 58 1 Y 1 D G 59 B G 59 1 Y 1 D C 60 B C 60 1 Y 1 D C 61 B C 61 1 Y 1 D U 62 B U 62 1 Y 1 D C 63 B C 63 1 Y 1 D C 64 B C 64 1 Y 1 D A 65 B A 65 1 Y 1 D C 66 B C 66 1 Y 1 D C 67 B C 67 1 Y 1 D A 68 B A 68 1 Y 1 A GLY 1 C GLY 1 1 Y 1 A LYS 2 C LYS 2 1 Y 1 A THR 73 C THR 73 1 Y 1 A ILE 74 C ILE 74 1 Y 1 A GLU 75 C GLU 75 1 Y 1 A TYR 131 C TYR 131 1 Y 1 A ASP 132 C ASP 132 1 Y 1 A ARG 133 C ARG 133 1 Y 1 A ARG 134 C ARG 134 1 Y 1 A ARG 135 C ARG 135 1 Y 1 A GLU 136 C GLU 136 1 Y 1 A LEU 137 C LEU 137 1 Y 1 A LYS 138 C LYS 138 1 Y 1 A GLU 139 C GLU 139 1 Y 1 A LYS 140 C LYS 140 1 Y 1 A ALA 141 C ALA 141 1 Y 1 A MET 142 C MET 142 1 Y 1 A LYS 143 C LYS 143 1 Y 1 A ARG 144 C ARG 144 1 Y 1 A GLU 145 C GLU 145 1 Y 1 A LEU 146 C LEU 146 1 Y 1 A GLU 147 C GLU 147 1 Y 1 A ARG 148 C ARG 148 1 Y 1 A GLU 149 C GLU 149 1 Y 1 A PHE 150 C PHE 150 1 Y 1 A LYS 151 C LYS 151 1 Y 1 A GLY 152 C GLY 152 1 Y 1 A LYS 153 C LYS 153 1 Y 1 A ILE 154 C ILE 154 1 Y 1 A HIS 155 C HIS 155 1 Y 1 A LEU 156 C LEU 156 1 Y 1 C GLY 1 D GLY 1 1 Y 1 C LYS 2 D LYS 2 1 Y 1 C THR 73 D THR 73 1 Y 1 C ILE 74 D ILE 74 1 Y 1 C GLU 75 D GLU 75 1 Y 1 C TYR 131 D TYR 131 1 Y 1 C ASP 132 D ASP 132 1 Y 1 C ARG 133 D ARG 133 1 Y 1 C ARG 134 D ARG 134 1 Y 1 C ARG 135 D ARG 135 1 Y 1 C GLU 136 D GLU 136 1 Y 1 C LEU 137 D LEU 137 1 Y 1 C LYS 138 D LYS 138 1 Y 1 C GLU 139 D GLU 139 1 Y 1 C LYS 140 D LYS 140 1 Y 1 C ALA 141 D ALA 141 1 Y 1 C MET 142 D MET 142 1 Y 1 C LYS 143 D LYS 143 1 Y 1 C ARG 144 D ARG 144 1 Y 1 C GLU 145 D GLU 145 1 Y 1 C LEU 146 D LEU 146 1 Y 1 C GLU 147 D GLU 147 1 Y 1 C ARG 148 D ARG 148 1 Y 1 C GLU 149 D GLU 149 1 Y 1 C PHE 150 D PHE 150 1 Y 1 C LYS 151 D LYS 151 1 Y 1 C GLY 152 D GLY 152 1 Y 1 C LYS 153 D LYS 153 1 Y 1 C ILE 154 D ILE 154 1 Y 1 C HIS 155 D HIS 155 1 Y 1 C LEU 156 D LEU 156 1 Y 1 B U 16 0.099 SIDE CHAIN 1 B U 28 0.067 SIDE CHAIN 1 B C 40 0.097 SIDE CHAIN 1 D U 28 0.072 SIDE CHAIN 1 D U 32 0.069 SIDE CHAIN 1 8.48 1.30 114.00 122.48 B B B N1 C1' C2' U U U 16 16 16 N 1 9.79 1.60 113.70 123.49 B B B C2' C3' O3' G G G 18 18 18 N 1 8.62 1.30 114.00 122.62 B B B N1 C1' C2' C C C 40 40 40 N 1 17.04 2.70 111.00 128.04 A A A N CA C TYR TYR TYR 62 62 62 N 1 A ILE 9 -122.72 -50.49 1 A GLU 14 -64.97 47.58 1 A ALA 15 -165.91 -10.22 1 A ASP 20 58.42 100.07 1 A ALA 27 -5.03 -136.79 1 A SER 34 -29.84 -51.65 1 A GLU 41 -61.31 0.98 1 A LYS 42 101.75 -65.61 1 A GLU 55 -89.80 -129.80 1 A ASN 56 -61.40 89.45 1 A LYS 70 -55.92 77.55 1 A HIS 77 68.66 72.13 1 A PRO 79 -49.55 -11.55 1 A ARG 81 14.96 134.47 1 A LEU 87 -146.00 12.34 1 A HIS 88 78.00 115.73 1 A GLN 100 -66.43 -100.89 1 A GLU 101 -1.21 -55.70 1 A TYR 104 -52.74 179.47 1 A ASN 116 44.95 28.83 1 A LYS 126 -111.91 -167.41 1 A LYS 129 77.48 -45.00 1 C ILE 9 -152.59 -66.47 1 C ALA 10 -80.51 -134.06 1 C GLU 11 105.19 120.62 1 C ILE 21 -34.75 142.74 1 C ALA 27 -64.68 -77.48 1 C LYS 42 133.77 -41.74 1 C VAL 45 -151.65 73.34 1 C GLU 55 -108.57 -132.57 1 C ASN 63 69.71 61.90 1 C LYS 70 -49.82 82.09 1 C HIS 77 76.76 103.45 1 C PRO 79 -16.94 -40.38 1 C ARG 81 -40.14 155.54 1 C GLN 100 -76.84 -79.19 1 C GLU 101 -31.03 -70.91 1 C TYR 104 -82.85 -142.58 1 C LYS 114 -156.69 86.26 1 C ASN 115 66.82 60.28 1 C LYS 126 -115.55 -159.92 1 C LYS 129 -54.34 -94.58 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER.TOP ION.TOP 108.4 15.09 0.00 0.00 15.09 0.00 -30.18 0.36 0.009 0.302 0.302 3.20 19.94 1647 18501 16854 9.8 94.4 RANDOM 1 GROUPED B-Factors THROUGHOUT 0 MAD Engh & Huber FLAT MODEL 90.774 0.224974 0.71 0.54 5.00 0.71 0.66 3.20 19.94 0 3519 0 1465 2054 0.007 1.5 22.2 1.36 0.46 0.032 0.413 3.40 212 2332 6 8.3 87.9 3.2 50 1P6V 17756 17756 0 -3 0.07 1 23.1 6.9 98.4 3.2 3.3 2.4 0.87 7.3 100 refinement CNS 1.1 data reduction DENZO data scaling SCALEPACK phasing SOLVE Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB 1 N N 1 N N 2 N N 2 N N SmpB (chain A) and tmRNA[delta] (chain B) for the ribonucleoprotein complex SmpB (chain C) and tmRNA[delta] (chain D) for the ribonucleoprotein complex; poorer defined in electron density A LYS 32 C LYS 32 HELX_P A GLU 41 C GLU 41 1 1 10 A HIS 88 C HIS 88 HELX_P A GLY 103 C GLY 103 1 2 16 C ASN 12 D ASN 12 HELX_P C ALA 17 D ALA 17 1 3 6 C LYS 32 D LYS 32 HELX_P C LYS 42 D LYS 42 1 4 11 C HIS 88 D HIS 88 HELX_P C LYS 102 D LYS 102 1 5 15 hydrog A-G MISPAIR B A 19 A N1 A 19 1_555 B G 38 A N2 G 38 1_555 hydrog WATSON-CRICK B C 20 A N3 C 20 1_555 B G 37 A N1 G 37 1_555 hydrog WATSON-CRICK B C 20 A N4 C 20 1_555 B G 37 A O6 G 37 1_555 hydrog WATSON-CRICK B C 20 A O2 C 20 1_555 B G 37 A N2 G 37 1_555 hydrog C-G PAIR B C 20 A N3 C 20 1_555 B G 38 A N2 G 38 1_555 hydrog WATSON-CRICK B G 21 A N1 G 21 1_555 B C 36 A N3 C 36 1_555 hydrog WATSON-CRICK B G 21 A N2 G 21 1_555 B C 36 A O2 C 36 1_555 hydrog WATSON-CRICK B G 21 A O6 G 21 1_555 B C 36 A N4 C 36 1_555 hydrog TYPE_28_PAIR B G 22 A N1 G 22 1_555 B U 35 A O2 U 35 1_555 hydrog TYPE_28_PAIR B G 22 A O6 G 22 1_555 B U 35 A N3 U 35 1_555 hydrog WATSON-CRICK B G 23 A N1 G 23 1_555 B C 34 A N3 C 34 1_555 hydrog WATSON-CRICK B G 23 A N2 G 23 1_555 B C 34 A O2 C 34 1_555 hydrog WATSON-CRICK B G 23 A O6 G 23 1_555 B C 34 A N4 C 34 1_555 hydrog G-C PAIR B G 24 A N1 G 24 1_555 B C 33 A N3 C 33 1_555 hydrog WATSON-CRICK B A 25 A N1 A 25 1_555 B U 32 A N3 U 32 1_555 hydrog WATSON-CRICK B A 25 A N6 A 25 1_555 B U 32 A O4 U 32 1_555 hydrog WATSON-CRICK B C 26 A N3 C 26 1_555 B G 31 A N1 G 31 1_555 hydrog WATSON-CRICK B C 26 A N4 C 26 1_555 B G 31 A O6 G 31 1_555 hydrog WATSON-CRICK B C 26 A O2 C 26 1_555 B G 31 A N2 G 31 1_555 hydrog WATSON-CRICK B G 41 A N1 G 41 1_555 B C 57 A N3 C 57 1_555 hydrog WATSON-CRICK B G 41 A N2 G 41 1_555 B C 57 A O2 C 57 1_555 hydrog WATSON-CRICK B G 41 A O6 G 41 1_555 B C 57 A N4 C 57 1_555 hydrog C-G PAIR B C 42 A N4 C 42 1_555 B G 56 A O6 G 56 1_555 hydrog WATSON-CRICK B G 43 A N1 G 43 1_555 B C 55 A N3 C 55 1_555 hydrog WATSON-CRICK B G 43 A N2 G 43 1_555 B C 55 A O2 C 55 1_555 hydrog WATSON-CRICK B G 43 A O6 G 43 1_555 B C 55 A N4 C 55 1_555 hydrog WATSON-CRICK B G 44 A N1 G 44 1_555 B C 54 A N3 C 54 1_555 hydrog WATSON-CRICK B G 44 A N2 G 44 1_555 B C 54 A O2 C 54 1_555 hydrog WATSON-CRICK B G 44 A O6 G 44 1_555 B C 54 A N4 C 54 1_555 hydrog G-C PAIR B G 45 A N1 G 45 1_555 B C 53 A N3 C 53 1_555 hydrog U-A PAIR B U 46 A N3 U 46 1_555 B A 50 A N1 A 50 1_555 hydrog A-C MISPAIR B A 50 A N6 A 50 1_555 B C 53 A O2 C 53 1_555 hydrog A-G MISPAIR D A 19 B N6 A 19 1_555 D G 38 B N3 G 38 1_555 hydrog WATSON-CRICK D C 20 B N3 C 20 1_555 D G 37 B N1 G 37 1_555 hydrog WATSON-CRICK D C 20 B N4 C 20 1_555 D G 37 B O6 G 37 1_555 hydrog WATSON-CRICK D C 20 B O2 C 20 1_555 D G 37 B N2 G 37 1_555 hydrog C-G PAIR D C 20 B N3 C 20 1_555 D G 38 B N2 G 38 1_555 hydrog WATSON-CRICK D G 21 B N1 G 21 1_555 D C 36 B N3 C 36 1_555 hydrog WATSON-CRICK D G 21 B N2 G 21 1_555 D C 36 B O2 C 36 1_555 hydrog WATSON-CRICK D G 21 B O6 G 21 1_555 D C 36 B N4 C 36 1_555 hydrog TYPE_28_PAIR D G 22 B N1 G 22 1_555 D U 35 B O2 U 35 1_555 hydrog TYPE_28_PAIR D G 22 B O6 G 22 1_555 D U 35 B N3 U 35 1_555 hydrog WATSON-CRICK D G 23 B N1 G 23 1_555 D C 34 B N3 C 34 1_555 hydrog WATSON-CRICK D G 23 B N2 G 23 1_555 D C 34 B O2 C 34 1_555 hydrog WATSON-CRICK D G 23 B O6 G 23 1_555 D C 34 B N4 C 34 1_555 hydrog G-C PAIR D G 24 B N1 G 24 1_555 D C 33 B N3 C 33 1_555 hydrog WATSON-CRICK D A 25 B N1 A 25 1_555 D U 32 B N3 U 32 1_555 hydrog WATSON-CRICK D A 25 B N6 A 25 1_555 D U 32 B O4 U 32 1_555 hydrog WATSON-CRICK D C 26 B N3 C 26 1_555 D G 31 B N1 G 31 1_555 hydrog WATSON-CRICK D C 26 B N4 C 26 1_555 D G 31 B O6 G 31 1_555 hydrog WATSON-CRICK D C 26 B O2 C 26 1_555 D G 31 B N2 G 31 1_555 RNA BINDING PROTEIN/RNA SmpB, tmRNA, trans-translation, protein-RNA complex, RNA BINDING PROTEIN-RNA COMPLEX SSRP_AQUAE UNP 2 2 O66640 1P6V PDB 1 1P6V 2 157 1P6V 1 156 O66640 A 1 1 156 2 157 1P6V 1 156 O66640 C 1 1 156 1 68 1P6V 1 68 1P6V B 2 1 68 1 68 1P6V 1 68 1P6V D 2 1 68 4 2 3 4 2 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 6 C ILE 6 A GLU 11 C GLU 11 A THR 105 C THR 105 A LYS 114 C LYS 114 A VAL 118 C VAL 118 A ALA 125 C ALA 125 A ILE 21 C ILE 21 A GLU 26 C GLU 26 A VAL 45 C VAL 45 A SER 46 C SER 46 A TYR 65 C TYR 65 A ILE 66 C ILE 66 A VAL 52 C VAL 52 A ARG 53 C ARG 53 A TRP 60 C TRP 60 A LEU 61 C LEU 61 A ARG 83 C ARG 83 A LYS 84 C LYS 84 C ILE 6 D ILE 6 C PRO 8 D PRO 8 C PRO 108 D PRO 108 C LYS 114 D LYS 114 C VAL 118 D VAL 118 C ALA 123 D ALA 123 C THR 24 D THR 24 C GLU 26 D GLU 26 C TYR 19 D TYR 19 C ASP 20 D ASP 20 C LYS 126 D LYS 126 C GLY 127 D GLY 127 C PHE 51 D PHE 51 C ILE 54 D ILE 54 C ALA 59 D ALA 59 C TYR 62 D TYR 62 C ARG 83 D ARG 83 C LYS 84 D LYS 84 96 P 43 21 2