1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ulmer, T.S.
Ramirez, B.E.
Delaglio, F.
Bax, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
125
9179
9191
10.1021/ja0350684
15369375
Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy.
2003
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
243
906
918
10.1006/jmbi.1994.1691
THE THIRD IGG-BINDING DOMAIN FROM STREPTOCOCCAL PROTEIN G. AN ANALYSIS BY X-RAY CRYSTALLOGRAPHY OF THE STRUCTURE ALONE AND IN A COMPLEX WITH FAB.
1994
10.2210/pdb1p7f/pdb
pdb_00001p7f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
6214.848
Immunoglobulin G binding protein G
THIRD IGG-BINDING DOMAIN
1
man
polymer
IgG binding protein G, GB3
no
no
MQYKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE
MQYKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Streptococcus
Escherichia
sample
1320
Streptococcus sp. 'group G'
562
Escherichia coli
HMS174
plasmid
pET-11a
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2003-08-05
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Crystal structure of the third IgG-binding domain from streptococcal protein G
GB3 solution structure obtained by refinement of X-ray structure with dipolar couplings
RCSB
Y
RCSB
2003-05-01
REL
REL
Best agreement with dipolar constraints
20
1
2D IPAP [15N,1H]-HSQC
3D CT(H)CA(CO)NH
13C-coupled 3D HNCO
quantitative J-correlation 3D TROSY-HNCO
0.05
6.5
ambient
300
K
GB3 solution structure obtained by refinement of the X-ray structure of GB3 (1IGD) with C(alpha)-C', C'-N and N-H dipolar couplings measured in five aligning media (bicelle, PEG, pf1 phage, negatively and positively charged polyacrylamide gels). HA is placed at the position that yields best agreement with the C(alpha)-H(alpha) dipolar couplings. The HA positions of V42 and T55 are extreme and may reflect dynamic effects or errors in the backbone position of CA. Dipolar couplings originating on residues 10-11, 24-26, 39-41 and the N- and C-terminal residues were excluded, resulting in identity
with the X-ray structure for these residues.
simulated annealing
1
fewest violations
25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media
Delaglio, F.
structure solution
DYNAMO
2.1
Delaglio, F.
refinement
DYNAMO
2.1
600
Bruker
DMX
800
Bruker
DRX
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
TYR
3
n
3
TYR
3
A
LYS
4
n
4
LYS
4
A
LEU
5
n
5
LEU
5
A
VAL
6
n
6
VAL
6
A
ILE
7
n
7
ILE
7
A
ASN
8
n
8
ASN
8
A
GLY
9
n
9
GLY
9
A
LYS
10
n
10
LYS
10
A
THR
11
n
11
THR
11
A
LEU
12
n
12
LEU
12
A
LYS
13
n
13
LYS
13
A
GLY
14
n
14
GLY
14
A
GLU
15
n
15
GLU
15
A
THR
16
n
16
THR
16
A
THR
17
n
17
THR
17
A
THR
18
n
18
THR
18
A
LYS
19
n
19
LYS
19
A
ALA
20
n
20
ALA
20
A
VAL
21
n
21
VAL
21
A
ASP
22
n
22
ASP
22
A
ALA
23
n
23
ALA
23
A
GLU
24
n
24
GLU
24
A
THR
25
n
25
THR
25
A
ALA
26
n
26
ALA
26
A
GLU
27
n
27
GLU
27
A
LYS
28
n
28
LYS
28
A
ALA
29
n
29
ALA
29
A
PHE
30
n
30
PHE
30
A
LYS
31
n
31
LYS
31
A
GLN
32
n
32
GLN
32
A
TYR
33
n
33
TYR
33
A
ALA
34
n
34
ALA
34
A
ASN
35
n
35
ASN
35
A
ASP
36
n
36
ASP
36
A
ASN
37
n
37
ASN
37
A
GLY
38
n
38
GLY
38
A
VAL
39
n
39
VAL
39
A
ASP
40
n
40
ASP
40
A
GLY
41
n
41
GLY
41
A
VAL
42
n
42
VAL
42
A
TRP
43
n
43
TRP
43
A
THR
44
n
44
THR
44
A
TYR
45
n
45
TYR
45
A
ASP
46
n
46
ASP
46
A
ASP
47
n
47
ASP
47
A
ALA
48
n
48
ALA
48
A
THR
49
n
49
THR
49
A
LYS
50
n
50
LYS
50
A
THR
51
n
51
THR
51
A
PHE
52
n
52
PHE
52
A
THR
53
n
53
THR
53
A
VAL
54
n
54
VAL
54
A
THR
55
n
55
THR
55
A
GLU
56
n
56
GLU
56
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
18
A
O
THR
18
A
N
TYR
3
A
N
TYR
3
A
N
ASN
8
A
N
ASN
8
A
O
VAL
54
A
O
VAL
54
A
O
THR
55
A
O
THR
55
A
N
VAL
42
A
N
VAL
42
1
A
ASN
8
-113.32
70.44
GB3 solution structure obtained by refinement of X-ray structure with dipolar couplings
1
N
N
A
ASP
22
A
ASP
22
HELX_P
A
ASN
37
A
ASN
37
1
1
16
IMMUNE SYSTEM
IMMUNE SYSTEM
SPG2_STRSG
UNP
1
444
P19909
YKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE
444
497
1P7F
3
56
P19909
A
1
3
56
1
cloning artifact
MET
1
1P7F
A
P19909
UNP
1
1
cloning artifact
GLN
2
1P7F
A
P19909
UNP
2
4
anti-parallel
parallel
anti-parallel
A
LYS
13
A
LYS
13
A
LYS
19
A
LYS
19
A
GLN
2
A
GLN
2
A
ASN
8
A
ASN
8
A
THR
51
A
THR
51
A
THR
55
A
THR
55
A
VAL
42
A
VAL
42
A
ASP
46
A
ASP
46