1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ulmer, T.S. Ramirez, B.E. Delaglio, F. Bax, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Am.Chem.Soc. JACSAT 0004 0002-7863 125 9179 9191 10.1021/ja0350684 15369375 Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy. 2003 UK J.Mol.Biol. JMOBAK 0070 0022-2836 243 906 918 10.1006/jmbi.1994.1691 THE THIRD IGG-BINDING DOMAIN FROM STREPTOCOCCAL PROTEIN G. AN ANALYSIS BY X-RAY CRYSTALLOGRAPHY OF THE STRUCTURE ALONE AND IN A COMPLEX WITH FAB. 1994 10.2210/pdb1p7f/pdb pdb_00001p7f 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 6214.848 Immunoglobulin G binding protein G THIRD IGG-BINDING DOMAIN 1 man polymer IgG binding protein G, GB3 no no MQYKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE MQYKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Streptococcus Escherichia sample 1320 Streptococcus sp. 'group G' 562 Escherichia coli HMS174 plasmid pET-11a database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2003-08-05 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Crystal structure of the third IgG-binding domain from streptococcal protein G GB3 solution structure obtained by refinement of X-ray structure with dipolar couplings RCSB Y RCSB 2003-05-01 REL REL Best agreement with dipolar constraints 20 1 2D IPAP [15N,1H]-HSQC 3D CT(H)CA(CO)NH 13C-coupled 3D HNCO quantitative J-correlation 3D TROSY-HNCO 0.05 6.5 ambient 300 K GB3 solution structure obtained by refinement of the X-ray structure of GB3 (1IGD) with C(alpha)-C', C'-N and N-H dipolar couplings measured in five aligning media (bicelle, PEG, pf1 phage, negatively and positively charged polyacrylamide gels). HA is placed at the position that yields best agreement with the C(alpha)-H(alpha) dipolar couplings. The HA positions of V42 and T55 are extreme and may reflect dynamic effects or errors in the backbone position of CA. Dipolar couplings originating on residues 10-11, 24-26, 39-41 and the N- and C-terminal residues were excluded, resulting in identity with the X-ray structure for these residues. simulated annealing 1 fewest violations 25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media Delaglio, F. structure solution DYNAMO 2.1 Delaglio, F. refinement DYNAMO 2.1 600 Bruker DMX 800 Bruker DRX MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A TYR 3 n 3 TYR 3 A LYS 4 n 4 LYS 4 A LEU 5 n 5 LEU 5 A VAL 6 n 6 VAL 6 A ILE 7 n 7 ILE 7 A ASN 8 n 8 ASN 8 A GLY 9 n 9 GLY 9 A LYS 10 n 10 LYS 10 A THR 11 n 11 THR 11 A LEU 12 n 12 LEU 12 A LYS 13 n 13 LYS 13 A GLY 14 n 14 GLY 14 A GLU 15 n 15 GLU 15 A THR 16 n 16 THR 16 A THR 17 n 17 THR 17 A THR 18 n 18 THR 18 A LYS 19 n 19 LYS 19 A ALA 20 n 20 ALA 20 A VAL 21 n 21 VAL 21 A ASP 22 n 22 ASP 22 A ALA 23 n 23 ALA 23 A GLU 24 n 24 GLU 24 A THR 25 n 25 THR 25 A ALA 26 n 26 ALA 26 A GLU 27 n 27 GLU 27 A LYS 28 n 28 LYS 28 A ALA 29 n 29 ALA 29 A PHE 30 n 30 PHE 30 A LYS 31 n 31 LYS 31 A GLN 32 n 32 GLN 32 A TYR 33 n 33 TYR 33 A ALA 34 n 34 ALA 34 A ASN 35 n 35 ASN 35 A ASP 36 n 36 ASP 36 A ASN 37 n 37 ASN 37 A GLY 38 n 38 GLY 38 A VAL 39 n 39 VAL 39 A ASP 40 n 40 ASP 40 A GLY 41 n 41 GLY 41 A VAL 42 n 42 VAL 42 A TRP 43 n 43 TRP 43 A THR 44 n 44 THR 44 A TYR 45 n 45 TYR 45 A ASP 46 n 46 ASP 46 A ASP 47 n 47 ASP 47 A ALA 48 n 48 ALA 48 A THR 49 n 49 THR 49 A LYS 50 n 50 LYS 50 A THR 51 n 51 THR 51 A PHE 52 n 52 PHE 52 A THR 53 n 53 THR 53 A VAL 54 n 54 VAL 54 A THR 55 n 55 THR 55 A GLU 56 n 56 GLU 56 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 18 A O THR 18 A N TYR 3 A N TYR 3 A N ASN 8 A N ASN 8 A O VAL 54 A O VAL 54 A O THR 55 A O THR 55 A N VAL 42 A N VAL 42 1 A ASN 8 -113.32 70.44 GB3 solution structure obtained by refinement of X-ray structure with dipolar couplings 1 N N A ASP 22 A ASP 22 HELX_P A ASN 37 A ASN 37 1 1 16 IMMUNE SYSTEM IMMUNE SYSTEM SPG2_STRSG UNP 1 444 P19909 YKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE 444 497 1P7F 3 56 P19909 A 1 3 56 1 cloning artifact MET 1 1P7F A P19909 UNP 1 1 cloning artifact GLN 2 1P7F A P19909 UNP 2 4 anti-parallel parallel anti-parallel A LYS 13 A LYS 13 A LYS 19 A LYS 19 A GLN 2 A GLN 2 A ASN 8 A ASN 8 A THR 51 A THR 51 A THR 55 A THR 55 A VAL 42 A VAL 42 A ASP 46 A ASP 46