0.020890
0.000000
0.000000
0.000000
0.020890
0.000000
0.000000
0.000000
0.005869
0.00000
0.00000
0.00000
Nandhagopal, N.
Simpson, A.A.
Johnson, M.C.
Francisco, A.B.
Schatz, G.W.
Rossmann, M.G.
Vogt, V.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
47.870
47.870
170.390
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
S
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
S
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
O
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
R
C
N
292
N
O
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
N
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
N
342
N
O
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
Y
233
N
doub
Y
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
doub
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
Y
307
N
sing
Y
308
N
sing
N
309
N
sing
Y
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
335
275
282
10.1016/j.jmb.2003.10.034
14659756
Dimeric rous sarcoma virus capsid protein structure relevant to immature gag assembly
2004
10.2210/pdb1p7n/pdb
pdb_00001p7n
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
CCD
2002-06-20
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.9
1.0
14-ID-B
APS
0.9
SYNCHROTRON
APS BEAMLINE 14-ID-B
18736.674
GAG POLYPROTEIN CAPSID PROTEIN P27
N-terminal domain
1
man
polymer
no
no
GPTSPGPALTDWARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPH
DVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLNRLKGLADGMVGNPQGQAALLRPGELVA
ITASALQAFREVARLA
GPTSPGPALTDWARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPH
DVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLNRLKGLADGMVGNPQGQAALLRPGELVA
ITASALQAFREVARLA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alpharetrovirus
Escherichia
sample
11886
Rous sarcoma virus
562
Escherichia coli
1
2.60
52.73
VAPOR DIFFUSION, HANGING DROP
7.5
10 mM HEPES-sodium buffer and 0.8M potassium sodium tartrate tetrahydrate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Refinement description
1
0
2003-12-23
1
1
2008-04-29
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
The same protein without the upstream extension
SEQUENCE
The protein sequence contains the N-terminal domain
of capsid protein P27 with an upstream 25-amino acid
extension C-terminal of GAG P10 PROTEIN.
RCSB
Y
RCSB
2003-05-02
REL
REL
1EM9
PDB ENTRY 1EM9
PDB
experimental model
GLY
-28
n
1
GLY
-28
A
PRO
-27
n
2
PRO
-27
A
THR
-26
n
3
THR
-26
A
SER
-25
n
4
SER
-25
A
PRO
-24
n
5
PRO
-24
A
GLY
-23
n
6
GLY
-23
A
PRO
-22
n
7
PRO
-22
A
ALA
-21
n
8
ALA
-21
A
LEU
-20
n
9
LEU
-20
A
THR
-19
n
10
THR
-19
A
ASP
-18
n
11
ASP
-18
A
TRP
-17
n
12
TRP
-17
A
ALA
-16
n
13
ALA
-16
A
ARG
-15
n
14
ARG
-15
A
VAL
-14
n
15
VAL
-14
A
ARG
-13
n
16
ARG
-13
A
GLU
-12
n
17
GLU
-12
A
GLU
-11
n
18
GLU
-11
A
LEU
-10
n
19
LEU
-10
A
ALA
-9
n
20
ALA
-9
A
SER
-8
n
21
SER
-8
A
THR
-7
n
22
THR
-7
A
GLY
-6
n
23
GLY
-6
A
PRO
-5
n
24
PRO
-5
A
PRO
-4
n
25
PRO
-4
A
VAL
-3
n
26
VAL
-3
A
VAL
-2
n
27
VAL
-2
A
ALA
-1
n
28
ALA
-1
A
MET
0
n
29
MET
0
A
PRO
1
n
30
PRO
1
A
VAL
2
n
31
VAL
2
A
VAL
3
n
32
VAL
3
A
ILE
4
n
33
ILE
4
A
LYS
5
n
34
LYS
5
A
THR
6
n
35
THR
6
A
GLU
7
n
36
GLU
7
A
GLY
8
n
37
GLY
8
A
PRO
9
n
38
PRO
9
A
ALA
10
n
39
ALA
10
A
TRP
11
n
40
TRP
11
A
THR
12
n
41
THR
12
A
PRO
13
n
42
PRO
13
A
LEU
14
n
43
LEU
14
A
GLU
15
n
44
GLU
15
A
PRO
16
n
45
PRO
16
A
LYS
17
n
46
LYS
17
A
LEU
18
n
47
LEU
18
A
ILE
19
n
48
ILE
19
A
THR
20
n
49
THR
20
A
ARG
21
n
50
ARG
21
A
LEU
22
n
51
LEU
22
A
ALA
23
n
52
ALA
23
A
ASP
24
n
53
ASP
24
A
THR
25
n
54
THR
25
A
VAL
26
n
55
VAL
26
A
ARG
27
n
56
ARG
27
A
THR
28
n
57
THR
28
A
LYS
29
n
58
LYS
29
A
GLY
30
n
59
GLY
30
A
LEU
31
n
60
LEU
31
A
ARG
32
n
61
ARG
32
A
SER
33
n
62
SER
33
A
PRO
34
n
63
PRO
34
A
ILE
35
n
64
ILE
35
A
THR
36
n
65
THR
36
A
MET
37
n
66
MET
37
A
ALA
38
n
67
ALA
38
A
GLU
39
n
68
GLU
39
A
VAL
40
n
69
VAL
40
A
GLU
41
n
70
GLU
41
A
ALA
42
n
71
ALA
42
A
LEU
43
n
72
LEU
43
A
MET
44
n
73
MET
44
A
SER
45
n
74
SER
45
A
SER
46
n
75
SER
46
A
PRO
47
n
76
PRO
47
A
LEU
48
n
77
LEU
48
A
LEU
49
n
78
LEU
49
A
PRO
50
n
79
PRO
50
A
HIS
51
n
80
HIS
51
A
ASP
52
n
81
ASP
52
A
VAL
53
n
82
VAL
53
A
THR
54
n
83
THR
54
A
ASN
55
n
84
ASN
55
A
LEU
56
n
85
LEU
56
A
MET
57
n
86
MET
57
A
ARG
58
n
87
ARG
58
A
VAL
59
n
88
VAL
59
A
ILE
60
n
89
ILE
60
A
LEU
61
n
90
LEU
61
A
GLY
62
n
91
GLY
62
A
PRO
63
n
92
PRO
63
A
ALA
64
n
93
ALA
64
A
PRO
65
n
94
PRO
65
A
TYR
66
n
95
TYR
66
A
ALA
67
n
96
ALA
67
A
LEU
68
n
97
LEU
68
A
TRP
69
n
98
TRP
69
A
MET
70
n
99
MET
70
A
ASP
71
n
100
ASP
71
A
ALA
72
n
101
ALA
72
A
TRP
73
n
102
TRP
73
A
GLY
74
n
103
GLY
74
A
VAL
75
n
104
VAL
75
A
GLN
76
n
105
GLN
76
A
LEU
77
n
106
LEU
77
A
GLN
78
n
107
GLN
78
A
THR
79
n
108
THR
79
A
VAL
80
n
109
VAL
80
A
ILE
81
n
110
ILE
81
A
ALA
82
n
111
ALA
82
A
ALA
83
n
112
ALA
83
A
ALA
84
n
113
ALA
84
A
THR
85
n
114
THR
85
A
ARG
86
n
115
ARG
86
A
ASP
87
n
116
ASP
87
A
PRO
88
n
117
PRO
88
A
ARG
89
n
118
ARG
89
A
HIS
90
n
119
HIS
90
A
PRO
91
n
120
PRO
91
A
ALA
92
n
121
ALA
92
A
ASN
93
n
122
ASN
93
A
GLY
94
n
123
GLY
94
A
GLN
95
n
124
GLN
95
A
GLY
96
n
125
GLY
96
A
ARG
97
n
126
ARG
97
A
GLY
98
n
127
GLY
98
A
GLU
99
n
128
GLU
99
A
ARG
100
n
129
ARG
100
A
THR
101
n
130
THR
101
A
ASN
102
n
131
ASN
102
A
LEU
103
n
132
LEU
103
A
ASN
104
n
133
ASN
104
A
ARG
105
n
134
ARG
105
A
LEU
106
n
135
LEU
106
A
LYS
107
n
136
LYS
107
A
GLY
108
n
137
GLY
108
A
LEU
109
n
138
LEU
109
A
ALA
110
n
139
ALA
110
A
ASP
111
n
140
ASP
111
A
GLY
112
n
141
GLY
112
A
MET
113
n
142
MET
113
A
VAL
114
n
143
VAL
114
A
GLY
115
n
144
GLY
115
A
ASN
116
n
145
ASN
116
A
PRO
117
n
146
PRO
117
A
GLN
118
n
147
GLN
118
A
GLY
119
n
148
GLY
119
A
GLN
120
n
149
GLN
120
A
ALA
121
n
150
ALA
121
A
ALA
122
n
151
ALA
122
A
LEU
123
n
152
LEU
123
A
LEU
124
n
153
LEU
124
A
ARG
125
n
154
ARG
125
A
PRO
126
n
155
PRO
126
A
GLY
127
n
156
GLY
127
A
GLU
128
n
157
GLU
128
A
LEU
129
n
158
LEU
129
A
VAL
130
n
159
VAL
130
A
ALA
131
n
160
ALA
131
A
ILE
132
n
161
ILE
132
A
THR
133
n
162
THR
133
A
ALA
134
n
163
ALA
134
A
SER
135
n
164
SER
135
A
ALA
136
n
165
ALA
136
A
LEU
137
n
166
LEU
137
A
GLN
138
n
167
GLN
138
A
ALA
139
n
168
ALA
139
A
PHE
140
n
169
PHE
140
A
ARG
141
n
170
ARG
141
A
GLU
142
n
171
GLU
142
A
VAL
143
n
172
VAL
143
A
ALA
144
n
173
ALA
144
A
ARG
145
n
174
ARG
145
A
LEU
146
n
175
LEU
146
A
ALA
147
n
176
ALA
147
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
3960
-34
17570
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_775
-y+2,-x+2,-z+1/2
crystal symmetry operation
95.7400000000
95.7400000000
85.1950000000
1
A
PRO
-27
-51.72
102.97
1
A
PRO
-24
-59.46
-70.40
1
A
GLU
-11
-54.48
-75.30
1
A
LEU
-10
-35.27
-39.75
1
A
SER
-8
-65.70
24.24
1
A
PRO
-4
-16.76
-91.41
1
A
VAL
-2
-167.40
-143.10
1
A
ALA
-1
-68.60
68.61
1
A
LYS
5
70.39
53.46
1
A
ARG
27
-63.42
-78.92
1
A
THR
28
-48.67
-86.76
1
A
LYS
29
-44.18
-13.21
1
A
LEU
31
-130.27
-41.87
1
A
GLU
99
-62.75
48.33
1
A
THR
101
-54.71
172.42
PROTEIN_REP.PARAM
PROTEIN.TOP
56.4
10.81
0.00
0.00
10.17
0.00
-20.98
0.298
0.016
0.26
0.26
2.60
26.50
331
5856
5.7
87.9
RANDOM
558128.82
558128.82
0
1
RESTRAINED
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB ENTRY 1EM9
FLAT MODEL
38.5603
0.303224
0.55
0.38
5
0.50
0.41
2.60
26.50
0
1315
0
0
1315
0.007
1.4
20.5
1.32
1.70
1.50
3.02
2.00
2.01
2.00
3.25
2.50
0.357
0.062
0.343
2.76
33
521
6
6.0
52.1
20.3
2.45
30.0
1P7N
7911
6743
0.055
1
8.3
85.2
0.329
2.45
2.54
396
1
51.4
refinement
CNS
1.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Dimeric Rous Sarcoma virus Capsid protein structure with an upstream 25-amino acid residue extension of C-terminal of Gag p10 protein
1
N
N
A
ASP
-18
A
ASP
11
HELX_P
A
SER
-8
A
SER
21
1
1
11
A
GLU
15
A
GLU
44
HELX_P
A
THR
28
A
THR
57
1
2
14
A
SER
33
A
SER
62
HELX_P
A
MET
44
A
MET
73
1
3
12
A
LEU
49
A
LEU
78
HELX_P
A
GLY
62
A
GLY
91
1
4
14
A
GLY
62
A
GLY
91
HELX_P
A
ASP
87
A
ASP
116
1
5
26
A
ASN
102
A
ASN
131
HELX_P
A
LYS
107
A
LYS
136
1
6
6
A
ASN
116
A
ASN
145
HELX_P
A
LEU
124
A
LEU
153
1
7
9
A
ARG
125
A
ARG
154
HELX_P
A
LEU
146
A
LEU
175
1
8
22
VIRAL PROTEIN
Retrovirus, capsid protein, Gag Polyprotein, immature gag, Viral protein
GAG_RSVP
UNP
1
215
P03322
PGPALTDWARVREELASTGPPVVAMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTN
LMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLNRLKGLADGMVGNPQGQAALLRPGELVAITAS
ALQAFREVARLA
215
386
1P7N
-24
147
P03322
A
1
5
176
1
cloning artifact
GLY
-28
1P7N
A
P03322
UNP
1
1
cloning artifact
PRO
-27
1P7N
A
P03322
UNP
2
1
cloning artifact
THR
-26
1P7N
A
P03322
UNP
3
1
cloning artifact
SER
-25
1P7N
A
P03322
UNP
4
92
P 41 21 2