0.010982 0.000000 0.000000 0.000000 0.016509 0.000000 0.000000 0.000000 0.014231 0.00000 0.00000 0.00000 Odell, M. Malinina, L. Teplova, M. Shuman, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 91.059 60.574 70.268 C3 H7 N O2 89.093 y ALANINE L-peptide linking C10 H14 N5 O7 P 347.221 ADENOSINE MONOPHOSPHATE non-polymer C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N P N 15 N O N 16 N O N 17 N O N 18 N O N 19 N C N 20 R C N 21 N O N 22 S C N 23 N O N 24 R C N 25 N O N 26 R C Y 27 N N Y 28 N C Y 29 N N Y 30 N C Y 31 N C N 32 N N Y 33 N N Y 34 N C Y 35 N N Y 36 N C N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 R C N 113 N C N 114 N O N 115 N C N 116 N S N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N N N 126 S C N 127 N C N 128 N O N 129 N C N 130 N C N 131 N C N 132 N O N 133 N N N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 S C N 147 N C N 148 N O N 149 N C N 150 N C N 151 N C N 152 N O N 153 N O N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N N N 165 N C N 166 N C N 167 N O N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N N N 175 S C N 176 N C N 177 N O N 178 N C Y 179 N C Y 180 N N Y 181 N C Y 182 N C Y 183 N N N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 S C N 203 N C N 204 N C N 205 N C N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N N N 221 S C N 222 N C N 223 N O N 224 N C N 225 N C N 226 N C N 227 N C N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 S C N 244 N C N 245 N O N 246 N C N 247 N C N 248 N C N 249 N C N 250 N N N 251 N O N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C N 272 N C N 273 N S N 274 N C N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C N 315 N C N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 R C N 346 N O N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N N Y 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N C N 396 N O N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C N 414 N C N 415 N C N 416 N O N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing Y 37 N sing Y 38 N sing Y 39 N doub N 40 N sing Y 41 N sing Y 42 N sing Y 43 N doub N 44 N sing Y 45 N doub N 46 N sing N 47 N sing Y 48 N sing Y 49 N doub N 50 N sing Y 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N doub Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing Y 287 N doub Y 288 N sing Y 289 N sing N 290 N sing Y 291 N doub N 292 N sing Y 293 N doub N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing Y 356 N doub Y 357 N sing Y 358 N sing N 359 N sing Y 360 N doub Y 361 N sing Y 362 N sing N 363 N sing Y 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N doub N 389 N sing Y 390 N doub N 391 N sing Y 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 31 5090 5100 10.1093/nar/gkg665 12930960 Analysis of the DNA Joining Repertoire of Chlorella Virus DNA ligase and a New Crystal Structure of the Ligase-Adenylate Intermediate 2003 10.2210/pdb1p8l/pdb pdb_00001p8l 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2002-01-25 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 35128.270 PBCV-1 DNA ligase 1 man polymer 347.221 ADENOSINE MONOPHOSPHATE 1 syn non-polymer 18.015 water 2 nat water no no HHHHHHMAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGAT FQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERD VLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMG SIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR HHHHHHMAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGAT FQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERD VLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMG SIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Chlorovirus Escherichia Escherichia coli sample 10506 Paramecium bursaria Chlorella virus 1 469008 Escherichia coli BL21(DE3) BL21 (DE3) 1 2.76 55.39 hanging drops 7.5 4-6% PEG 4000, 50 mM HEPES, 50 mM sodium acetate, pH 7.5, hanging drops, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Advisory Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2003-08-26 1 1 2008-04-29 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-05-07 REL REL AMP ADENOSINE MONOPHOSPHATE HOH water 1FVI PDB ENTRY 1FVI PDB experimental model AMP 301 2 AMP AMP 301 A HOH 311 3 HOH HOH 311 A HOH 325 3 HOH HOH 325 A n 1 -5 A n 2 -4 A n 3 -3 A n 4 -2 A n 5 -1 A n 6 0 A n 7 1 A ALA 2 n 8 ALA 2 A ILE 3 n 9 ILE 3 A THR 4 n 10 THR 4 A LYS 5 n 11 LYS 5 A PRO 6 n 12 PRO 6 A LEU 7 n 13 LEU 7 A LEU 8 n 14 LEU 8 A ALA 9 n 15 ALA 9 A ALA 10 n 16 ALA 10 A THR 11 n 17 THR 11 A LEU 12 n 18 LEU 12 A GLU 13 n 19 GLU 13 A ASN 14 n 20 ASN 14 A ILE 15 n 21 ILE 15 A GLU 16 n 22 GLU 16 A ASP 17 n 23 ASP 17 A VAL 18 n 24 VAL 18 A GLN 19 n 25 GLN 19 A PHE 20 n 26 PHE 20 A PRO 21 n 27 PRO 21 A CYS 22 n 28 CYS 22 A LEU 23 n 29 LEU 23 A ALA 24 n 30 ALA 24 A THR 25 n 31 THR 25 A PRO 26 n 32 PRO 26 A LYS 27 n 33 LYS 27 A ILE 28 n 34 ILE 28 A ASP 29 n 35 ASP 29 A GLY 30 n 36 GLY 30 A ILE 31 n 37 ILE 31 A ARG 32 n 38 ARG 32 A SER 33 n 39 SER 33 A VAL 34 n 40 VAL 34 A LYS 35 n 41 LYS 35 A GLN 36 n 42 GLN 36 A THR 37 n 43 THR 37 A GLN 38 n 44 GLN 38 A MET 39 n 45 MET 39 A LEU 40 n 46 LEU 40 A SER 41 n 47 SER 41 A ARG 42 n 48 ARG 42 A THR 43 n 49 THR 43 A PHE 44 n 50 PHE 44 A LYS 45 n 51 LYS 45 A PRO 46 n 52 PRO 46 A ILE 47 n 53 ILE 47 A ARG 48 n 54 ARG 48 A ASN 49 n 55 ASN 49 A SER 50 n 56 SER 50 A VAL 51 n 57 VAL 51 A MET 52 n 58 MET 52 A ASN 53 n 59 ASN 53 A ARG 54 n 60 ARG 54 A LEU 55 n 61 LEU 55 A LEU 56 n 62 LEU 56 A THR 57 n 63 THR 57 A GLU 58 n 64 GLU 58 A LEU 59 n 65 LEU 59 A LEU 60 n 66 LEU 60 A PRO 61 n 67 PRO 61 A GLU 62 n 68 GLU 62 A GLY 63 n 69 GLY 63 A SER 64 n 70 SER 64 A ASP 65 n 71 ASP 65 A GLY 66 n 72 GLY 66 A GLU 67 n 73 GLU 67 A ILE 68 n 74 ILE 68 A SER 69 n 75 SER 69 A ILE 70 n 76 ILE 70 A GLU 71 n 77 GLU 71 A GLY 72 n 78 GLY 72 A ALA 73 n 79 ALA 73 A THR 74 n 80 THR 74 A PHE 75 n 81 PHE 75 A GLN 76 n 82 GLN 76 A ASP 77 n 83 ASP 77 A THR 78 n 84 THR 78 A THR 79 n 85 THR 79 A SER 80 n 86 SER 80 A ALA 81 n 87 ALA 81 A VAL 82 n 88 VAL 82 A MET 83 n 89 MET 83 A THR 84 n 90 THR 84 A GLY 85 n 91 GLY 85 A HIS 86 n 92 HIS 86 A LYS 87 n 93 LYS 87 A MET 88 n 94 MET 88 A TYR 89 n 95 TYR 89 A ASN 90 n 96 ASN 90 A ALA 91 n 97 ALA 91 A LYS 92 n 98 LYS 92 A PHE 93 n 99 PHE 93 A SER 94 n 100 SER 94 A TYR 95 n 101 TYR 95 A TYR 96 n 102 TYR 96 A TRP 97 n 103 TRP 97 A PHE 98 n 104 PHE 98 A ASP 99 n 105 ASP 99 A TYR 100 n 106 TYR 100 A VAL 101 n 107 VAL 101 A THR 102 n 108 THR 102 A ASP 103 n 109 ASP 103 A ASP 104 n 110 ASP 104 A PRO 105 n 111 PRO 105 A LEU 106 n 112 LEU 106 A LYS 107 n 113 LYS 107 A LYS 108 n 114 LYS 108 A TYR 109 n 115 TYR 109 A ILE 110 n 116 ILE 110 A ASP 111 n 117 ASP 111 A ARG 112 n 118 ARG 112 A VAL 113 n 119 VAL 113 A GLU 114 n 120 GLU 114 A ASP 115 n 121 ASP 115 A MET 116 n 122 MET 116 A LYS 117 n 123 LYS 117 A ASN 118 n 124 ASN 118 A TYR 119 n 125 TYR 119 A ILE 120 n 126 ILE 120 A THR 121 n 127 THR 121 A VAL 122 n 128 VAL 122 A HIS 123 n 129 HIS 123 A PRO 124 n 130 PRO 124 A HIS 125 n 131 HIS 125 A ILE 126 n 132 ILE 126 A LEU 127 n 133 LEU 127 A GLU 128 n 134 GLU 128 A HIS 129 n 135 HIS 129 A ALA 130 n 136 ALA 130 A GLN 131 n 137 GLN 131 A VAL 132 n 138 VAL 132 A LYS 133 n 139 LYS 133 A ILE 134 n 140 ILE 134 A ILE 135 n 141 ILE 135 A PRO 136 n 142 PRO 136 A LEU 137 n 143 LEU 137 A ILE 138 n 144 ILE 138 A PRO 139 n 145 PRO 139 A VAL 140 n 146 VAL 140 A GLU 141 n 147 GLU 141 A ILE 142 n 148 ILE 142 A ASN 143 n 149 ASN 143 A ASN 144 n 150 ASN 144 A ILE 145 n 151 ILE 145 A THR 146 n 152 THR 146 A GLU 147 n 153 GLU 147 A LEU 148 n 154 LEU 148 A LEU 149 n 155 LEU 149 A GLN 150 n 156 GLN 150 A TYR 151 n 157 TYR 151 A GLU 152 n 158 GLU 152 A ARG 153 n 159 ARG 153 A ASP 154 n 160 ASP 154 A VAL 155 n 161 VAL 155 A LEU 156 n 162 LEU 156 A SER 157 n 163 SER 157 A LYS 158 n 164 LYS 158 A GLY 159 n 165 GLY 159 A PHE 160 n 166 PHE 160 A GLU 161 n 167 GLU 161 A GLY 162 n 168 GLY 162 A VAL 163 n 169 VAL 163 A MET 164 n 170 MET 164 A ILE 165 n 171 ILE 165 A ARG 166 n 172 ARG 166 A LYS 167 n 173 LYS 167 A PRO 168 n 174 PRO 168 A ASP 169 n 175 ASP 169 A GLY 170 n 176 GLY 170 A LYS 171 n 177 LYS 171 A TYR 172 n 178 TYR 172 A LYS 173 n 179 LYS 173 A PHE 174 n 180 PHE 174 A GLY 175 n 181 GLY 175 A ARG 176 n 182 ARG 176 A SER 177 n 183 SER 177 A THR 178 n 184 THR 178 A LEU 179 n 185 LEU 179 A LYS 180 n 186 LYS 180 A GLU 181 n 187 GLU 181 A GLY 182 n 188 GLY 182 A ILE 183 n 189 ILE 183 A LEU 184 n 190 LEU 184 A LEU 185 n 191 LEU 185 A LYS 186 n 192 LYS 186 A MET 187 n 193 MET 187 A LYS 188 n 194 LYS 188 A GLN 189 n 195 GLN 189 A PHE 190 n 196 PHE 190 A LYS 191 n 197 LYS 191 A ASP 192 n 198 ASP 192 A ALA 193 n 199 ALA 193 A GLU 194 n 200 GLU 194 A ALA 195 n 201 ALA 195 A THR 196 n 202 THR 196 A ILE 197 n 203 ILE 197 A ILE 198 n 204 ILE 198 A SER 199 n 205 SER 199 A MET 200 n 206 MET 200 A THR 201 n 207 THR 201 A ALA 202 n 208 ALA 202 A LEU 203 n 209 LEU 203 A PHE 204 n 210 PHE 204 A LYS 205 n 211 LYS 205 A ASN 206 n 212 ASN 206 A n 213 207 A n 214 208 A n 215 209 A n 216 210 A n 217 211 A n 218 212 A n 219 213 A n 220 214 A PHE 215 n 221 PHE 215 A GLY 216 n 222 GLY 216 A TYR 217 n 223 TYR 217 A n 224 218 A n 225 219 A n 226 220 A n 227 221 A n 228 222 A n 229 223 A n 230 224 A n 231 225 A n 232 226 A n 233 227 A n 234 228 A n 235 229 A GLU 230 n 236 GLU 230 A ASP 231 n 237 ASP 231 A VAL 232 n 238 VAL 232 A MET 233 n 239 MET 233 A GLY 234 n 240 GLY 234 A SER 235 n 241 SER 235 A ILE 236 n 242 ILE 236 A GLU 237 n 243 GLU 237 A VAL 238 n 244 VAL 238 A ASP 239 n 245 ASP 239 A TYR 240 n 246 TYR 240 A ASP 241 n 247 ASP 241 A GLY 242 n 248 GLY 242 A VAL 243 n 249 VAL 243 A VAL 244 n 250 VAL 244 A PHE 245 n 251 PHE 245 A SER 246 n 252 SER 246 A ILE 247 n 253 ILE 247 A GLY 248 n 254 GLY 248 A THR 249 n 255 THR 249 A GLY 250 n 256 GLY 250 A PHE 251 n 257 PHE 251 A ASP 252 n 258 ASP 252 A ALA 253 n 259 ALA 253 A ASP 254 n 260 ASP 254 A GLN 255 n 261 GLN 255 A ARG 256 n 262 ARG 256 A ARG 257 n 263 ARG 257 A ASP 258 n 264 ASP 258 A PHE 259 n 265 PHE 259 A TRP 260 n 266 TRP 260 A GLN 261 n 267 GLN 261 A ASN 262 n 268 ASN 262 A LYS 263 n 269 LYS 263 A GLU 264 n 270 GLU 264 A SER 265 n 271 SER 265 A TYR 266 n 272 TYR 266 A ILE 267 n 273 ILE 267 A GLY 268 n 274 GLY 268 A LYS 269 n 275 LYS 269 A MET 270 n 276 MET 270 A VAL 271 n 277 VAL 271 A LYS 272 n 278 LYS 272 A PHE 273 n 279 PHE 273 A LYS 274 n 280 LYS 274 A TYR 275 n 281 TYR 275 A PHE 276 n 282 PHE 276 A GLU 277 n 283 GLU 277 A MET 278 n 284 MET 278 A GLY 279 n 285 GLY 279 A SER 280 n 286 SER 280 A LYS 281 n 287 LYS 281 A ASP 282 n 288 ASP 282 A CYS 283 n 289 CYS 283 A PRO 284 n 290 PRO 284 A ARG 285 n 291 ARG 285 A PHE 286 n 292 PHE 286 A PRO 287 n 293 PRO 287 A VAL 288 n 294 VAL 288 A PHE 289 n 295 PHE 289 A ILE 290 n 296 ILE 290 A GLY 291 n 297 GLY 291 A ILE 292 n 298 ILE 292 A ARG 293 n 299 ARG 293 A HIS 294 n 300 HIS 294 A GLU 295 n 301 GLU 295 A GLU 296 n 302 GLU 296 A ASP 297 n 303 ASP 297 A n 304 298 A 6.0108 -1.5044 0.7806 6.4808 -2.3871 5.4027 -0.8240 -1.1999 0.5272 -0.1165 0.6578 0.3541 -0.1738 -0.0729 0.1662 0.2637 0.3207 -0.1545 0.7539 -0.2123 1.2859 refined 24.4950 24.2870 16.8470 X-RAY DIFFRACTION 14.3359 -0.0653 1.5716 12.4733 2.8119 2.1521 -1.4240 -2.5066 1.3985 0.2895 1.3903 -1.1622 -0.4620 0.2360 0.0337 0.3075 0.4999 -0.2999 0.9925 -0.2886 1.2510 refined 51.0980 8.5120 21.6960 X-RAY DIFFRACTION A 2 A 8 A 188 A 194 X-RAY DIFFRACTION 1 A 301 B 1 A 301 B 1 X-RAY DIFFRACTION 1 A 215 A 221 A 217 A 223 X-RAY DIFFRACTION 1 A 311 C 1 A 325 C 2 X-RAY DIFFRACTION 1 A 189 A 195 A 206 A 212 X-RAY DIFFRACTION 2 A 230 A 236 A 297 A 303 X-RAY DIFFRACTION 2 author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 10 A N ALA 16 A O LYS 186 A O LYS 192 A O LEU 185 A O LEU 191 A N ILE 165 A N ILE 171 A O ARG 166 A O ARG 172 A N LEU 23 A N LEU 29 A N ALA 24 A N ALA 30 A O VAL 140 A O VAL 146 A O LEU 40 A O LEU 46 A N VAL 34 A N VAL 40 A N ILE 31 A N ILE 37 A O ILE 68 A O ILE 74 A N SER 69 A N SER 75 A O SER 94 A O SER 100 A N TYR 95 A N TYR 101 A O LYS 133 A O LYS 139 A O PHE 245 A O PHE 251 A N VAL 238 A N VAL 244 A O GLY 234 A O GLY 240 A N THR 201 A N THR 207 A N ALA 193 A N ALA 199 A O PHE 273 A O PHE 279 A N LYS 272 A N LYS 278 A O ILE 290 A O ILE 296 1 A CG LYS 87 A CG LYS 93 1 Y 1 A CD LYS 87 A CD LYS 93 1 Y 1 A CE LYS 87 A CE LYS 93 1 Y 1 A NZ LYS 87 A NZ LYS 93 1 Y 1 A HIS -5 A HIS 1 1 Y 1 A HIS -4 A HIS 2 1 Y 1 A HIS -3 A HIS 3 1 Y 1 A HIS -2 A HIS 4 1 Y 1 A HIS -1 A HIS 5 1 Y 1 A HIS 0 A HIS 6 1 Y 1 A MET 1 A MET 7 1 Y 1 A THR 207 A THR 213 1 Y 1 A ASN 208 A ASN 214 1 Y 1 A THR 209 A THR 215 1 Y 1 A LYS 210 A LYS 216 1 Y 1 A THR 211 A THR 217 1 Y 1 A LYS 212 A LYS 218 1 Y 1 A ASP 213 A ASP 219 1 Y 1 A ASN 214 A ASN 220 1 Y 1 A SER 218 A SER 224 1 Y 1 A LYS 219 A LYS 225 1 Y 1 A ARG 220 A ARG 226 1 Y 1 A SER 221 A SER 227 1 Y 1 A THR 222 A THR 228 1 Y 1 A HIS 223 A HIS 229 1 Y 1 A LYS 224 A LYS 230 1 Y 1 A SER 225 A SER 231 1 Y 1 A GLY 226 A GLY 232 1 Y 1 A LYS 227 A LYS 233 1 Y 1 A VAL 228 A VAL 234 1 Y 1 A GLU 229 A GLU 235 1 Y 1 A ARG 298 A ARG 304 1 Y 1 A A OD2 OH ASP TYR 65 172 2.15 1 A A PHE PRO 20 21 -132.08 1 5.52 0.90 118.30 123.82 A A A CB CG OD2 ASP ASP ASP 17 17 17 N 1 6.20 0.90 118.30 124.50 A A A CB CG OD2 ASP ASP ASP 104 104 104 N 1 6.69 0.90 118.30 124.99 A A A CB CG OD2 ASP ASP ASP 192 192 192 N 1 5.55 0.90 118.30 123.85 A A A CB CG OD2 ASP ASP ASP 241 241 241 N 1 5.57 0.90 118.30 123.87 A A A CB CG OD2 ASP ASP ASP 282 282 282 N 1 5.77 0.90 118.30 124.07 A A A CB CG OD2 ASP ASP ASP 297 297 297 N 1 A GLU 16 -71.62 39.75 1 A PHE 20 -84.81 -143.43 1 A PRO 21 -13.12 57.18 1 A ASP 29 -105.81 69.32 1 A THR 37 51.70 -79.57 1 A GLN 38 -100.74 -168.50 1 A THR 57 -37.84 -29.59 1 A LEU 59 -100.12 -65.79 1 A ASN 90 -153.04 3.74 1 A THR 102 69.85 -67.76 1 A ASP 103 -158.97 -94.90 1 A ILE 126 -26.08 -38.69 1 A ILE 183 -71.93 -71.41 1 A ILE 198 -151.13 -29.40 1 A LEU 203 -53.15 -78.22 1 A PHE 204 158.65 94.55 1 A ASP 239 -74.14 -89.45 1 A TYR 240 58.03 101.92 1 A ASP 241 13.11 92.23 1 A ALA 253 -59.93 -9.95 1 A MET 278 -88.70 -125.69 1 A SER 280 -64.44 65.74 1 A CYS 283 -178.23 97.90 1 A PHE 286 16.20 93.14 26.237 4.92 0.00 0.00 0.37 0.00 -5.30 0.911 0.876 0.30351 0.26299 0.26641 2.95 15.00 680 8265 7585 8.2 96.86 35.010 0.560 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT 0.507 0.80 0.80 1.40 PDB ENTRY 1FVI MAXIMUM LIKELIHOOD MASK 2.95 15.00 2 2252 22 0 2228 0.013 0.022 2300 1.575 1.971 3099 7.828 5.000 273 38.004 24.340 106 23.032 15.000 420 14.840 15.000 12 0.128 0.200 339 0.005 0.020 1708 0.251 0.200 1044 0.213 0.200 77 0.289 0.200 35 0.202 0.200 3 0.414 1.500 1371 0.777 2.000 2226 1.153 3.000 929 1.924 4.500 873 0.406 0.405 3.024 55 529 20 26.2 2.95 15 1P8L 8265 8265 0 0.092 1 3.5 96.9 refinement REFMAC 5.1.06 data reduction CrystalClear (MSC/RIGAKU) data scaling SCALEPACK phasing AMoRE New Crystal Structure of Chlorella Virus DNA Ligase-Adenylate 1 N N 2 N N 3 N N A ASN 49 A ASN 55 HELX_P A LEU 60 A LEU 66 1 1 12 A GLN 76 A GLN 82 HELX_P A MET 83 A MET 89 1 2 8 A LYS 108 A LYS 114 HELX_P A HIS 123 A HIS 129 1 3 16 A PRO 124 A PRO 130 HELX_P A GLU 128 A GLU 134 5 4 5 A ASN 144 A ASN 150 HELX_P A LYS 158 A LYS 164 1 5 15 A GLN 255 A GLN 261 HELX_P A TRP 260 A TRP 266 1 6 6 covale 1.670 one A LYS 27 A NZ LYS 33 1_555 A AMP 301 B P AMP 1_555 LIGASE ligase O41026_CHVP1 UNP 1 1 O41026 MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTS AVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGF EGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDY DGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR 1 298 1P8L 1 298 O41026 A 1 7 304 1 expression tag HIS -5 1P8L A O41026 UNP 1 1 expression tag HIS -4 1P8L A O41026 UNP 2 1 expression tag HIS -3 1P8L A O41026 UNP 3 1 expression tag HIS -2 1P8L A O41026 UNP 4 1 expression tag HIS -1 1P8L A O41026 UNP 5 1 expression tag HIS 0 1P8L A O41026 UNP 6 5 5 5 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 10 A ALA 16 A THR 11 A THR 17 A LEU 185 A LEU 191 A MET 187 A MET 193 A VAL 163 A VAL 169 A ARG 166 A ARG 172 A LEU 23 A LEU 29 A PRO 26 A PRO 32 A VAL 140 A VAL 146 A GLU 141 A GLU 147 A MET 39 A MET 45 A LEU 40 A LEU 46 A ILE 31 A ILE 37 A LYS 35 A LYS 41 A SER 64 A SER 70 A SER 69 A SER 75 A PHE 93 A PHE 99 A TYR 100 A TYR 106 A VAL 132 A VAL 138 A PRO 136 A PRO 142 A PHE 245 A PHE 251 A ILE 247 A ILE 253 A MET 233 A MET 239 A VAL 238 A VAL 244 A LYS 191 A LYS 197 A ALA 202 A ALA 208 A MET 270 A MET 276 A PHE 276 A PHE 282 A ARG 285 A ARG 291 A ILE 292 A ILE 298 BINDING SITE FOR RESIDUE AMP A 301 A AMP 301 Software 11 A THR 25 A THR 31 11 1_555 A PRO 26 A PRO 32 11 1_555 A LYS 27 A LYS 33 11 1_555 A ILE 28 A ILE 34 11 1_555 A ASP 29 A ASP 35 11 1_555 A ARG 32 A ARG 38 11 1_555 A GLU 67 A GLU 73 11 1_555 A PHE 98 A PHE 104 11 1_555 A MET 164 A MET 170 11 1_555 A LEU 184 A LEU 190 11 1_555 A LYS 186 A LYS 192 11 1_555 18 P 21 21 2