0.020325 0.011735 0.000000 0.000000 0.023470 0.000000 0.000000 0.000000 0.010081 0.00000 0.00000 0.00000 Dyer, D.H. Rubio, L.M. Thoden, J.B. Holden, H.M. Ludden, P.W. Rayment, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 49.200 49.200 99.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N O N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C Y 152 N C Y 153 N N Y 154 N C Y 155 N C Y 156 N N N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 S C N 176 N C N 177 N C N 178 N C N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N O N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 R C N 319 N O N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N N Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C N 387 N C N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing Y 257 N doub Y 258 N sing Y 259 N sing N 260 N sing Y 261 N doub N 262 N sing Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N sing Y 335 N doub N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N doub N 359 N sing Y 360 N doub N 361 N sing Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 278 32150 32156 10.1074/jbc.M304264200 12754195 The Three-dimensional Structure of the Core Domain of NafY from Azotobacter vinelandii determined at 1.8 A resolution 2003 10.2210/pdb1p90/pdb pdb_00001p90 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 120 1 CCD 2002-03-01 CUSTOM-MADE SINGLE WAVELENGTH M x-ray 1 0.97 1.0 19-ID APS 0.97 SYNCHROTRON APS BEAMLINE 19-ID 15514.565 hypothetical protein core domain 1 man polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 18.015 water 174 nat water NafY protein no no ERVPEGSIRVAIASNNGEQLDGHFGSCLRFLVYQVSAKDASLVDIRSTLDVALAEDKNAWRVEQIQDCQVLYVVSIGGPA AAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSPPPWLAKLVGVSAEERVRFSVSDDEDEAARA ERVPEGSIRVAIASNNGEQLDGHFGSCLRFLVYQVSAKDASLVDIRSTLDVALAEDKNAWRVEQIQDCQVLYVVSIGGPA AAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSPPPWLAKLVGVSAEERVRFSVSDDEDEAARA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Azotobacter Escherichia sample NafY 354 Azotobacter vinelandii 562 Escherichia coli 1 2.23 44.92 VAPOR DIFFUSION, HANGING DROP 8.5 3 ml of NafY protein at 10 mg/ml combined with an equal volume of 13% PEG 10000, 2.5% glycerol, 100 mM Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-08-19 1 1 2008-04-29 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-05-08 REL REL EDO 1,2-ETHANEDIOL HOH water EG 300 2 EDO EDO 300 A HOH 400 3 HOH HOH 400 A HOH 402 3 HOH HOH 402 A HOH 403 3 HOH HOH 403 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 406 3 HOH HOH 406 A HOH 407 3 HOH HOH 407 A HOH 409 3 HOH HOH 409 A HOH 410 3 HOH HOH 410 A HOH 411 3 HOH HOH 411 A HOH 413 3 HOH HOH 413 A HOH 414 3 HOH HOH 414 A HOH 416 3 HOH HOH 416 A HOH 417 3 HOH HOH 417 A HOH 418 3 HOH HOH 418 A HOH 419 3 HOH HOH 419 A HOH 421 3 HOH HOH 421 A HOH 422 3 HOH HOH 422 A HOH 423 3 HOH HOH 423 A HOH 425 3 HOH HOH 425 A HOH 427 3 HOH HOH 427 A HOH 428 3 HOH HOH 428 A HOH 429 3 HOH HOH 429 A HOH 430 3 HOH HOH 430 A HOH 431 3 HOH HOH 431 A HOH 432 3 HOH HOH 432 A HOH 433 3 HOH HOH 433 A HOH 434 3 HOH HOH 434 A HOH 436 3 HOH HOH 436 A HOH 437 3 HOH HOH 437 A HOH 438 3 HOH HOH 438 A HOH 439 3 HOH HOH 439 A HOH 441 3 HOH HOH 441 A HOH 443 3 HOH HOH 443 A HOH 445 3 HOH HOH 445 A HOH 446 3 HOH HOH 446 A HOH 452 3 HOH HOH 452 A HOH 454 3 HOH HOH 454 A HOH 455 3 HOH HOH 455 A HOH 456 3 HOH HOH 456 A HOH 460 3 HOH HOH 460 A HOH 465 3 HOH HOH 465 A HOH 467 3 HOH HOH 467 A HOH 468 3 HOH HOH 468 A HOH 471 3 HOH HOH 471 A HOH 472 3 HOH HOH 472 A HOH 474 3 HOH HOH 474 A HOH 475 3 HOH HOH 475 A HOH 477 3 HOH HOH 477 A HOH 478 3 HOH HOH 478 A HOH 600 3 HOH HOH 600 A HOH 601 3 HOH HOH 601 A HOH 602 3 HOH HOH 602 A HOH 603 3 HOH HOH 603 A HOH 604 3 HOH HOH 604 A HOH 605 3 HOH HOH 605 A HOH 606 3 HOH HOH 606 A HOH 607 3 HOH HOH 607 A HOH 608 3 HOH HOH 608 A HOH 609 3 HOH HOH 609 A HOH 610 3 HOH HOH 610 A HOH 611 3 HOH HOH 611 A HOH 612 3 HOH HOH 612 A HOH 614 3 HOH HOH 614 A HOH 615 3 HOH HOH 615 A HOH 616 3 HOH HOH 616 A HOH 617 3 HOH HOH 617 A HOH 619 3 HOH HOH 619 A HOH 620 3 HOH HOH 620 A HOH 622 3 HOH HOH 622 A HOH 623 3 HOH HOH 623 A HOH 624 3 HOH HOH 624 A HOH 625 3 HOH HOH 625 A HOH 626 3 HOH HOH 626 A HOH 627 3 HOH HOH 627 A HOH 628 3 HOH HOH 628 A HOH 632 3 HOH HOH 632 A HOH 633 3 HOH HOH 633 A HOH 635 3 HOH HOH 635 A HOH 636 3 HOH HOH 636 A HOH 637 3 HOH HOH 637 A HOH 638 3 HOH HOH 638 A HOH 639 3 HOH HOH 639 A HOH 642 3 HOH HOH 642 A HOH 645 3 HOH HOH 645 A HOH 646 3 HOH HOH 646 A HOH 647 3 HOH HOH 647 A HOH 648 3 HOH HOH 648 A HOH 650 3 HOH HOH 650 A HOH 652 3 HOH HOH 652 A HOH 654 3 HOH HOH 654 A HOH 655 3 HOH HOH 655 A HOH 656 3 HOH HOH 656 A HOH 660 3 HOH HOH 660 A HOH 662 3 HOH HOH 662 A HOH 663 3 HOH HOH 663 A HOH 664 3 HOH HOH 664 A HOH 665 3 HOH HOH 665 A HOH 666 3 HOH HOH 666 A HOH 667 3 HOH HOH 667 A HOH 669 3 HOH HOH 669 A HOH 670 3 HOH HOH 670 A HOH 674 3 HOH HOH 674 A HOH 675 3 HOH HOH 675 A HOH 678 3 HOH HOH 678 A HOH 679 3 HOH HOH 679 A HOH 680 3 HOH HOH 680 A HOH 681 3 HOH HOH 681 A HOH 685 3 HOH HOH 685 A HOH 695 3 HOH HOH 695 A HOH 697 3 HOH HOH 697 A HOH 698 3 HOH HOH 698 A HOH 707 3 HOH HOH 707 A HOH 711 3 HOH HOH 711 A HOH 900 3 HOH HOH 900 A HOH 901 3 HOH HOH 901 A HOH 902 3 HOH HOH 902 A HOH 903 3 HOH HOH 903 A HOH 905 3 HOH HOH 905 A HOH 907 3 HOH HOH 907 A HOH 909 3 HOH HOH 909 A HOH 910 3 HOH HOH 910 A HOH 911 3 HOH HOH 911 A HOH 913 3 HOH HOH 913 A HOH 914 3 HOH HOH 914 A HOH 915 3 HOH HOH 915 A HOH 916 3 HOH HOH 916 A HOH 917 3 HOH HOH 917 A HOH 919 3 HOH HOH 919 A HOH 920 3 HOH HOH 920 A HOH 923 3 HOH HOH 923 A HOH 925 3 HOH HOH 925 A HOH 928 3 HOH HOH 928 A HOH 932 3 HOH HOH 932 A HOH 933 3 HOH HOH 933 A HOH 934 3 HOH HOH 934 A HOH 936 3 HOH HOH 936 A HOH 937 3 HOH HOH 937 A HOH 940 3 HOH HOH 940 A HOH 941 3 HOH HOH 941 A HOH 942 3 HOH HOH 942 A HOH 943 3 HOH HOH 943 A HOH 944 3 HOH HOH 944 A HOH 945 3 HOH HOH 945 A HOH 950 3 HOH HOH 950 A HOH 1100 3 HOH HOH 1100 A HOH 1101 3 HOH HOH 1101 A HOH 1102 3 HOH HOH 1102 A HOH 1103 3 HOH HOH 1103 A HOH 1104 3 HOH HOH 1104 A HOH 1105 3 HOH HOH 1105 A HOH 1106 3 HOH HOH 1106 A HOH 1107 3 HOH HOH 1107 A HOH 1108 3 HOH HOH 1108 A HOH 1109 3 HOH HOH 1109 A HOH 1110 3 HOH HOH 1110 A HOH 1111 3 HOH HOH 1111 A HOH 1114 3 HOH HOH 1114 A HOH 1304 3 HOH HOH 1304 A HOH 1305 3 HOH HOH 1305 A HOH 1306 3 HOH HOH 1306 A HOH 1307 3 HOH HOH 1307 A HOH 1308 3 HOH HOH 1308 A HOH 1309 3 HOH HOH 1309 A HOH 1310 3 HOH HOH 1310 A HOH 1311 3 HOH HOH 1311 A HOH 1312 3 HOH HOH 1312 A HOH 1313 3 HOH HOH 1313 A HOH 1314 3 HOH HOH 1314 A HOH 1316 3 HOH HOH 1316 A HOH 1317 3 HOH HOH 1317 A HOH 1318 3 HOH HOH 1318 A HOH 1319 3 HOH HOH 1319 A HOH 1320 3 HOH HOH 1320 A ALA 99 n 1 GLU 99 A ARG 100 n 2 ARG 100 A VAL 101 n 3 VAL 101 A PRO 102 n 4 PRO 102 A GLU 103 n 5 GLU 103 A GLY 104 n 6 GLY 104 A SER 105 n 7 SER 105 A ILE 106 n 8 ILE 106 A ARG 107 n 9 ARG 107 A VAL 108 n 10 VAL 108 A ALA 109 n 11 ALA 109 A ILE 110 n 12 ILE 110 A ALA 111 n 13 ALA 111 A SER 112 n 14 SER 112 A ASN 113 n 15 ASN 113 A ASN 114 n 16 ASN 114 A GLY 115 n 17 GLY 115 A GLU 116 n 18 GLU 116 A GLN 117 n 19 GLN 117 A LEU 118 n 20 LEU 118 A ASP 119 n 21 ASP 119 A GLY 120 n 22 GLY 120 A HIS 121 n 23 HIS 121 A PHE 122 n 24 PHE 122 A GLY 123 n 25 GLY 123 A SER 124 n 26 SER 124 A CYS 125 n 27 CYS 125 A LEU 126 n 28 LEU 126 A ARG 127 n 29 ARG 127 A PHE 128 n 30 PHE 128 A LEU 129 n 31 LEU 129 A VAL 130 n 32 VAL 130 A TYR 131 n 33 TYR 131 A GLN 132 n 34 GLN 132 A VAL 133 n 35 VAL 133 A SER 134 n 36 SER 134 A ALA 135 n 37 ALA 135 A LYS 136 n 38 LYS 136 A ASP 137 n 39 ASP 137 A ALA 138 n 40 ALA 138 A SER 139 n 41 SER 139 A LEU 140 n 42 LEU 140 A VAL 141 n 43 VAL 141 A ASP 142 n 44 ASP 142 A ILE 143 n 45 ILE 143 A ARG 144 n 46 ARG 144 A SER 145 n 47 SER 145 A THR 146 n 48 THR 146 A LEU 147 n 49 LEU 147 A ASP 148 n 50 ASP 148 A VAL 149 n 51 VAL 149 A ALA 150 n 52 ALA 150 A LEU 151 n 53 LEU 151 A ALA 152 n 54 ALA 152 A GLU 153 n 55 GLU 153 A ASP 154 n 56 ASP 154 A LYS 155 n 57 LYS 155 A ASN 156 n 58 ASN 156 A ALA 157 n 59 ALA 157 A TRP 158 n 60 TRP 158 A ARG 159 n 61 ARG 159 A VAL 160 n 62 VAL 160 A GLU 161 n 63 GLU 161 A GLN 162 n 64 GLN 162 A ILE 163 n 65 ILE 163 A GLN 164 n 66 GLN 164 A ASP 165 n 67 ASP 165 A CYS 166 n 68 CYS 166 A GLN 167 n 69 GLN 167 A VAL 168 n 70 VAL 168 A LEU 169 n 71 LEU 169 A TYR 170 n 72 TYR 170 A VAL 171 n 73 VAL 171 A VAL 172 n 74 VAL 172 A SER 173 n 75 SER 173 A ILE 174 n 76 ILE 174 A GLY 175 n 77 GLY 175 A GLY 176 n 78 GLY 176 A PRO 177 n 79 PRO 177 A ALA 178 n 80 ALA 178 A ALA 179 n 81 ALA 179 A ALA 180 n 82 ALA 180 A LYS 181 n 83 LYS 181 A VAL 182 n 84 VAL 182 A VAL 183 n 85 VAL 183 A ARG 184 n 86 ARG 184 A ALA 185 n 87 ALA 185 A GLY 186 n 88 GLY 186 A ILE 187 n 89 ILE 187 A HIS 188 n 90 HIS 188 A PRO 189 n 91 PRO 189 A LEU 190 n 92 LEU 190 A LYS 191 n 93 LYS 191 A LYS 192 n 94 LYS 192 A PRO 193 n 95 PRO 193 A LYS 194 n 96 LYS 194 A GLY 195 n 97 GLY 195 A CYS 196 n 98 CYS 196 A ALA 197 n 99 ALA 197 A ALA 198 n 100 ALA 198 A GLN 199 n 101 GLN 199 A GLU 200 n 102 GLU 200 A ALA 201 n 103 ALA 201 A ILE 202 n 104 ILE 202 A ALA 203 n 105 ALA 203 A GLU 204 n 106 GLU 204 A LEU 205 n 107 LEU 205 A GLN 206 n 108 GLN 206 A THR 207 n 109 THR 207 A VAL 208 n 110 VAL 208 A MET 209 n 111 MET 209 A ALA 210 n 112 ALA 210 A GLY 211 n 113 GLY 211 A SER 212 n 114 SER 212 A PRO 213 n 115 PRO 213 A PRO 214 n 116 PRO 214 A PRO 215 n 117 PRO 215 A TRP 216 n 118 TRP 216 A LEU 217 n 119 LEU 217 A ALA 218 n 120 ALA 218 A LYS 219 n 121 LYS 219 A LEU 220 n 122 LEU 220 A VAL 221 n 123 VAL 221 A n 124 222 A n 125 223 A n 126 224 A n 127 225 A n 128 226 A n 129 227 A n 130 228 A n 131 229 A n 132 230 A n 133 231 A n 134 232 A n 135 233 A n 136 234 A n 137 235 A n 138 236 A n 139 237 A n 140 238 A n 141 239 A n 142 240 A n 143 241 A n 144 242 A n 145 243 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASP 142 A O ASP 44 A N VAL 130 A N VAL 32 A O TYR 131 A O TYR 33 A N VAL 108 A N VAL 10 A N ALA 109 A N ALA 11 A O TYR 170 A O TYR 72 A N LEU 169 A N LEU 71 A O LEU 190 A O LEU 92 A N LEU 118 A N LEU 20 A O CYS 196 A O CYS 98 1 A HOH 624 C HOH 1 A CG GLU 99 A CG GLU 1 1 Y 1 A CD GLU 99 A CD GLU 1 1 Y 1 A OE1 GLU 99 A OE1 GLU 1 1 Y 1 A OE2 GLU 99 A OE2 GLU 1 1 Y 1 A GLY 222 A GLY 124 1 Y 1 A VAL 223 A VAL 125 1 Y 1 A SER 224 A SER 126 1 Y 1 A ALA 225 A ALA 127 1 Y 1 A GLU 226 A GLU 128 1 Y 1 A GLU 227 A GLU 129 1 Y 1 A ARG 228 A ARG 130 1 Y 1 A VAL 229 A VAL 131 1 Y 1 A ARG 230 A ARG 132 1 Y 1 A PHE 231 A PHE 133 1 Y 1 A SER 232 A SER 134 1 Y 1 A VAL 233 A VAL 135 1 Y 1 A SER 234 A SER 136 1 Y 1 A ASP 235 A ASP 137 1 Y 1 A ASP 236 A ASP 138 1 Y 1 A GLU 237 A GLU 139 1 Y 1 A ASP 238 A ASP 140 1 Y 1 A GLU 239 A GLU 141 1 Y 1 A ALA 240 A ALA 142 1 Y 1 A ALA 241 A ALA 143 1 Y 1 A ARG 242 A ARG 144 1 Y 1 A ALA 243 A ALA 145 1 Y 1 12.87 1.80 110.60 123.47 A A A N CA CB ARG ARG ARG 100 100 100 N 1 -6.19 0.90 118.30 112.11 A A A CB CG OD2 ASP ASP ASP 119 119 119 N 1 5.56 0.50 120.30 125.86 A A A NE CZ NH1 ARG ARG ARG 127 127 127 N 1 -4.23 0.50 120.30 116.07 A A A NE CZ NH2 ARG ARG ARG 127 127 127 N 1 -5.60 0.90 118.30 112.70 A A A CB CG OD2 ASP ASP ASP 137 137 137 A A A N 1 -5.64 0.90 118.30 112.66 A A A CB CG OD2 ASP ASP ASP 137 137 137 B B B N 1 5.61 0.90 118.30 123.91 A A A CB CG OD1 ASP ASP ASP 142 142 142 N 1 -5.60 0.90 118.30 112.70 A A A CB CG OD2 ASP ASP ASP 148 148 148 N 1 5.99 0.90 118.30 124.29 A A A CB CG OD1 ASP ASP ASP 154 154 154 A A A N 1 -6.03 0.90 118.30 112.27 A A A CB CG OD2 ASP ASP ASP 154 154 154 B B B N 1 3.55 0.50 120.30 123.85 A A A NE CZ NH1 ARG ARG ARG 159 159 159 N 1 A A CD OE2 GLU GLU 153 153 0.072 0.011 1.252 1.324 N 1 A A CD OE2 GLU GLU 161 161 0.067 0.011 1.252 1.319 N 1 A A CD OE2 GLU GLU 204 204 0.068 0.011 1.252 1.320 N 1 A A O O HOH HOH 446 446 1.55 1_555 6_555 1 A VAL 101 -37.76 146.40 1 A ASP 148 -66.80 1.84 1 A CYS 196 -171.68 -177.40 1 A SER 212 -118.99 74.42 0.263 0.188 0.194 0.188 1.8 30. 1347 13182 13182 100 random 10% 1 THROUGHOUT 0. 0. MIR Engh & Huber 1.8 30. 174 1110 4 0 932 0.011 2.47 0.005 1.8 30. 1P90 24908 24908 0. 0. 0.057 1 43.7 7.2 100 0.346 1.8 1.86 5.6 2531 5.1 100 data collection HKL-2000 data scaling SCALEPACK phasing SOLVE refinement TNT data reduction HKL-2000 The Three-dimensional Structure of the Core Domain of NafY from Azotobacter vinelandii determined at 1.8 resolution 1 N N 2 N N 3 N N A LEU 147 A LEU 49 HELX_P A ALA 152 A ALA 54 5 1 6 A ASP 154 A ASP 56 HELX_P A ILE 163 A ILE 65 1 2 10 A GLY 175 A GLY 77 HELX_P A ALA 185 A ALA 87 1 3 11 A ALA 198 A ALA 100 HELX_P A GLY 211 A GLY 113 1 4 14 A PRO 214 A PRO 116 HELX_P A VAL 221 A VAL 123 1 5 8 PROTEIN BINDING Ribonuclease H motif, PROTEIN BINDING Q9F5X9_AZOVI UNP 1 99 Q9F5X9 ERVPEGSIRVAIASNNGEQLDGHFGSCLRFLVYQVSAKDASLVDIRSTLDVALAEDKNAWRVEQIQDCQVLYVVSIGGPA AAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSPPPWLAKLVGVSAEERVRFSVSDDEDEAARA 99 243 1P90 99 243 Q9F5X9 A 1 1 145 5 2 anti-parallel anti-parallel parallel parallel anti-parallel A ALA 138 A ALA 40 A SER 145 A SER 47 A ARG 127 A ARG 29 A SER 134 A SER 36 A SER 105 A SER 7 A SER 112 A SER 14 A VAL 168 A VAL 70 A VAL 171 A VAL 73 A HIS 188 A HIS 90 A LYS 191 A LYS 93 A GLN 117 A GLN 19 A LEU 118 A LEU 20 A CYS 196 A CYS 98 A ALA 197 A ALA 99 BINDING SITE FOR RESIDUE EDO A 300 A EDO 300 Software 5 A SER 105 A SER 7 5 1_555 A GLN 132 A GLN 34 5 1_555 A ASP 137 A ASP 39 5 1_555 A ALA 138 A ALA 40 5 1_555 A SER 139 A SER 41 5 1_555 154 P 32 2 1