1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Erbel, P.J. Card, P.B. Karakuzu, O. Bruick, R.K. Gardner, K.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 100 15504 15509 10.1073/pnas.2533374100 14668441 Structural basis for PAS domain heterodimerization in the basic helix-loop-helix-PAS transcription factor hypoxia-inducible factor. 2003 10.2210/pdb1p97/pdb pdb_00001p97 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 13192.977 Endothelial PAS domain protein 1 C-terminal PAS domain 1 man polymer EPAS-1, Member of PAS protein 2, MOP2 no no GAMDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGY VWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN GAMDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGY VWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample EPAS1 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) BL21(DE3) Plasmid pGb1-parallel database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2004-01-13 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2003-05-09 REL structures with the lowest energy 1000 20 3D_13C-separated_NOESY 3D_15N-separated_NOESY 2D NOESY 15 mM - 75 mM 7.3 ambient 303 K simulated annealing 0.9mM HIF2a (240-350) U-15N,13C; 50 mM Tris buffer, 15 mM NaCl, 5 mM DTT (pH 7.3); 90% H2O, 10% D2O 90% H2O/10% D2O Brunger refinement CNS 1.1 500 Varian INOVA 600 Varian INOVA GLY 1 n 1 GLY 1 A ALA 2 n 2 ALA 2 A MET 3 n 3 MET 3 A ASP 4 n 4 ASP 4 A SER 5 n 5 SER 5 A LYS 6 n 6 LYS 6 A THR 7 n 7 THR 7 A PHE 8 n 8 PHE 8 A LEU 9 n 9 LEU 9 A SER 10 n 10 SER 10 A ARG 11 n 11 ARG 11 A HIS 12 n 12 HIS 12 A SER 13 n 13 SER 13 A MET 14 n 14 MET 14 A ASP 15 n 15 ASP 15 A MET 16 n 16 MET 16 A LYS 17 n 17 LYS 17 A PHE 18 n 18 PHE 18 A THR 19 n 19 THR 19 A TYR 20 n 20 TYR 20 A CYS 21 n 21 CYS 21 A ASP 22 n 22 ASP 22 A ASP 23 n 23 ASP 23 A ARG 24 n 24 ARG 24 A ILE 25 n 25 ILE 25 A THR 26 n 26 THR 26 A GLU 27 n 27 GLU 27 A LEU 28 n 28 LEU 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A TYR 31 n 31 TYR 31 A HIS 32 n 32 HIS 32 A PRO 33 n 33 PRO 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A LEU 36 n 36 LEU 36 A LEU 37 n 37 LEU 37 A GLY 38 n 38 GLY 38 A ARG 39 n 39 ARG 39 A SER 40 n 40 SER 40 A ALA 41 n 41 ALA 41 A TYR 42 n 42 TYR 42 A GLU 43 n 43 GLU 43 A PHE 44 n 44 PHE 44 A TYR 45 n 45 TYR 45 A HIS 46 n 46 HIS 46 A ALA 47 n 47 ALA 47 A LEU 48 n 48 LEU 48 A ASP 49 n 49 ASP 49 A SER 50 n 50 SER 50 A GLU 51 n 51 GLU 51 A ASN 52 n 52 ASN 52 A MET 53 n 53 MET 53 A THR 54 n 54 THR 54 A LYS 55 n 55 LYS 55 A SER 56 n 56 SER 56 A HIS 57 n 57 HIS 57 A GLN 58 n 58 GLN 58 A ASN 59 n 59 ASN 59 A LEU 60 n 60 LEU 60 A CYS 61 n 61 CYS 61 A THR 62 n 62 THR 62 A LYS 63 n 63 LYS 63 A GLY 64 n 64 GLY 64 A GLN 65 n 65 GLN 65 A VAL 66 n 66 VAL 66 A VAL 67 n 67 VAL 67 A SER 68 n 68 SER 68 A GLY 69 n 69 GLY 69 A GLN 70 n 70 GLN 70 A TYR 71 n 71 TYR 71 A ARG 72 n 72 ARG 72 A MET 73 n 73 MET 73 A LEU 74 n 74 LEU 74 A ALA 75 n 75 ALA 75 A LYS 76 n 76 LYS 76 A HIS 77 n 77 HIS 77 A GLY 78 n 78 GLY 78 A GLY 79 n 79 GLY 79 A TYR 80 n 80 TYR 80 A VAL 81 n 81 VAL 81 A TRP 82 n 82 TRP 82 A LEU 83 n 83 LEU 83 A GLU 84 n 84 GLU 84 A THR 85 n 85 THR 85 A GLN 86 n 86 GLN 86 A GLY 87 n 87 GLY 87 A THR 88 n 88 THR 88 A VAL 89 n 89 VAL 89 A ILE 90 n 90 ILE 90 A TYR 91 n 91 TYR 91 A ASN 92 n 92 ASN 92 A PRO 93 n 93 PRO 93 A ARG 94 n 94 ARG 94 A ASN 95 n 95 ASN 95 A LEU 96 n 96 LEU 96 A GLN 97 n 97 GLN 97 A PRO 98 n 98 PRO 98 A GLN 99 n 99 GLN 99 A CYS 100 n 100 CYS 100 A ILE 101 n 101 ILE 101 A MET 102 n 102 MET 102 A CYS 103 n 103 CYS 103 A VAL 104 n 104 VAL 104 A ASN 105 n 105 ASN 105 A TYR 106 n 106 TYR 106 A VAL 107 n 107 VAL 107 A LEU 108 n 108 LEU 108 A SER 109 n 109 SER 109 A GLU 110 n 110 GLU 110 A ILE 111 n 111 ILE 111 A GLU 112 n 112 GLU 112 A LYS 113 n 113 LYS 113 A ASN 114 n 114 ASN 114 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 20 A O TYR 20 A N ARG 11 A N ARG 11 A N LYS 6 A N LYS 6 A O VAL 107 A O VAL 107 A O GLU 112 A O GLU 112 A N TYR 80 A N TYR 80 A O VAL 81 A O VAL 81 A N MET 73 A N MET 73 1 A A HB3 HA HIS MET 12 16 1.30 1 A A OE2 HZ1 GLU LYS 51 55 1.58 2 A A HB3 HD13 GLN LEU 70 108 1.25 2 A A HG HG22 LEU VAL 60 89 1.28 3 A A OH HG1 TYR THR 71 85 1.59 5 A A HG HG21 LEU VAL 60 89 1.30 5 A A HG3 HD12 GLU LEU 84 108 1.34 5 A A HD1 OE2 HIS GLU 32 34 1.58 6 A A OD2 HZ2 ASP LYS 15 17 1.58 7 A A HG HG22 LEU VAL 60 89 1.23 7 A A O HE GLU ARG 35 39 1.60 9 A A HG HG21 LEU VAL 60 89 1.28 10 A A HG HG23 LEU VAL 60 89 1.24 10 A A OE2 HZ2 GLU LYS 51 55 1.55 12 A A HG HG23 LEU VAL 60 89 1.32 12 A A HG3 HD12 GLU LEU 84 108 1.34 15 A A HG HG23 LEU VAL 60 89 1.24 17 A A HG HG23 LEU VAL 60 89 1.29 18 A A HB2 HB HIS ILE 12 101 1.33 18 A A HG HG22 LEU VAL 60 89 1.35 19 A A HB2 HB LYS VAL 6 107 1.34 7 A TYR 91 0.056 SIDE CHAIN 14 A TYR 31 0.064 SIDE CHAIN 1 A ALA 2 57.21 81.90 1 A SER 5 64.42 155.47 1 A MET 14 44.59 -85.22 1 A PHE 18 156.26 114.67 1 A LEU 37 -64.14 92.77 1 A TYR 45 -68.85 70.10 1 A HIS 46 74.33 133.52 1 A THR 62 -147.84 37.13 1 A LEU 96 57.77 9.40 1 A PRO 98 -62.69 98.62 1 A LEU 108 -90.93 -67.67 2 A SER 5 -156.02 -150.05 2 A MET 16 63.36 65.16 2 A PHE 18 157.52 108.16 2 A LEU 37 -59.16 89.83 2 A PHE 44 -151.90 -0.66 2 A TYR 45 -67.82 66.33 2 A HIS 46 67.17 103.91 2 A THR 62 -149.73 29.81 2 A HIS 77 -98.69 31.18 2 A LEU 96 63.20 -6.14 2 A PRO 98 -59.20 101.77 3 A MET 14 31.83 -78.58 3 A MET 16 62.27 66.28 3 A PHE 18 146.96 86.87 3 A LEU 37 -56.87 89.58 3 A SER 40 -41.66 103.20 3 A TYR 42 -49.46 -19.83 3 A HIS 46 77.88 141.47 3 A PRO 98 -44.40 87.98 3 A LEU 108 -92.71 -73.25 4 A MET 14 39.01 -79.77 4 A MET 16 73.95 38.72 4 A PHE 18 149.16 106.46 4 A LEU 37 -59.41 88.95 4 A SER 40 -39.24 101.75 4 A PHE 44 -154.56 -2.26 4 A TYR 45 -68.13 71.32 4 A HIS 46 69.97 106.41 4 A ALA 75 -79.70 -160.29 4 A PRO 98 -64.80 99.01 4 A LEU 108 -97.10 -67.61 5 A ALA 2 59.05 95.25 5 A ASP 4 -51.45 -72.53 5 A MET 14 44.79 -93.21 5 A MET 16 71.35 35.08 5 A PHE 18 155.06 110.50 5 A LEU 37 -63.36 95.38 5 A PHE 44 -154.55 -8.84 5 A HIS 46 76.98 129.82 5 A ASN 95 -143.29 -21.14 5 A LEU 96 55.47 17.88 5 A PRO 98 -58.51 93.59 5 A LEU 108 -103.37 -67.40 6 A PHE 18 150.52 97.94 6 A LEU 37 -58.08 90.25 6 A SER 40 -38.02 98.86 6 A TYR 45 -64.86 72.23 6 A HIS 46 68.41 110.29 6 A THR 62 -142.69 25.26 6 A LEU 96 49.35 25.73 6 A LEU 108 -95.80 -85.26 6 A GLU 110 48.31 168.68 7 A MET 3 -125.21 -57.92 7 A LYS 6 59.27 77.43 7 A MET 14 42.60 -84.59 7 A PHE 18 152.94 116.41 7 A LEU 37 -63.80 95.47 7 A PHE 44 -156.58 35.36 7 A TYR 45 -109.85 51.02 7 A HIS 46 73.80 115.88 7 A PRO 98 -57.88 98.92 7 A LEU 108 -97.54 -60.18 8 A ALA 2 59.80 -167.38 8 A ASP 4 -92.03 -155.13 8 A LYS 6 63.40 88.19 8 A MET 14 42.05 -87.78 8 A PHE 18 148.34 114.40 8 A LEU 37 -63.29 97.15 8 A PHE 44 -155.85 -9.16 8 A TYR 45 -65.91 69.72 8 A HIS 46 72.49 130.33 8 A THR 62 -147.69 31.33 8 A HIS 77 -99.28 31.70 8 A LEU 96 50.48 16.82 8 A PRO 98 -60.29 99.07 8 A LEU 108 -91.12 -69.26 9 A MET 3 -175.56 -178.53 9 A SER 5 63.31 -166.60 9 A MET 14 42.23 -86.11 9 A MET 16 72.91 38.49 9 A PHE 18 152.19 109.54 9 A LEU 37 -62.14 92.78 9 A TYR 42 -54.40 -9.60 9 A PHE 44 -155.85 -3.19 9 A TYR 45 -65.95 67.81 9 A HIS 46 71.84 115.22 9 A THR 62 -144.80 10.78 9 A ASN 95 -144.57 -30.67 9 A LEU 108 -91.23 -68.94 10 A MET 3 -90.14 45.57 10 A ASP 4 -140.44 -71.77 10 A MET 14 39.82 -85.72 10 A MET 16 70.44 39.31 10 A PHE 18 155.40 106.46 10 A LEU 37 -63.31 88.02 10 A SER 40 -39.32 105.29 10 A PHE 44 -154.54 -2.41 10 A TYR 45 -69.49 69.27 10 A HIS 46 68.85 103.84 10 A LEU 96 56.11 13.14 10 A PRO 98 -65.72 97.58 10 A LEU 108 -102.43 -65.19 11 A LYS 6 52.78 80.29 11 A MET 14 38.74 -85.49 11 A MET 16 71.60 32.21 11 A PHE 18 153.47 111.56 11 A LEU 37 -63.58 88.30 11 A SER 40 -37.60 105.14 11 A TYR 45 -64.86 70.61 11 A HIS 46 70.13 116.41 11 A THR 62 -150.00 31.24 11 A HIS 77 -97.48 31.15 11 A PRO 98 -61.60 96.71 11 A LEU 108 -104.07 -76.67 12 A ALA 2 59.39 85.32 12 A MET 3 68.37 93.50 12 A SER 5 73.18 -80.67 12 A LYS 6 59.85 93.72 12 A MET 14 43.14 -86.40 12 A PHE 18 150.85 100.67 12 A LEU 37 -63.82 91.21 12 A PHE 44 -154.66 -5.80 12 A TYR 45 -65.97 69.62 12 A HIS 46 73.83 128.90 12 A THR 62 -147.21 29.63 12 A GLN 70 -51.14 107.62 12 A ASN 95 -142.21 -26.37 12 A LEU 96 55.35 16.15 12 A PRO 98 -60.65 95.82 12 A LEU 108 -121.88 -68.62 13 A SER 5 67.38 179.55 13 A MET 14 41.81 -82.69 13 A PHE 18 155.33 108.65 13 A LEU 37 -58.76 90.66 13 A PHE 44 -153.20 -3.62 13 A TYR 45 -68.00 69.69 13 A HIS 46 71.25 114.74 13 A THR 62 -149.15 42.34 13 A PRO 98 -62.43 90.67 14 A MET 3 -135.93 -53.11 14 A ASP 4 69.01 -73.32 14 A MET 14 34.97 -80.53 14 A MET 16 67.06 80.77 14 A LYS 17 -102.57 -64.28 14 A PHE 18 162.45 48.36 14 A LEU 37 -21.60 -65.85 14 A SER 40 -39.85 105.42 14 A HIS 46 73.88 132.79 14 A SER 68 -68.21 -74.20 14 A LEU 96 57.35 14.76 14 A PRO 98 -56.93 95.48 15 A MET 3 68.02 -172.37 15 A MET 14 45.66 -87.48 15 A MET 16 77.21 33.96 15 A PHE 18 142.13 102.97 15 A LEU 37 -62.95 90.51 15 A SER 40 -39.35 104.36 15 A PHE 44 -154.10 -4.25 15 A HIS 46 72.46 133.05 15 A THR 62 -152.32 47.79 15 A GLN 65 -171.04 145.03 15 A ALA 75 -78.26 -164.89 15 A LEU 96 58.50 2.71 15 A PRO 98 -58.10 102.89 15 A LEU 108 -103.81 -72.25 16 A ALA 2 -139.82 -68.29 16 A MET 3 -112.89 -71.45 16 A ASP 4 66.80 -66.85 16 A SER 5 -64.49 83.64 16 A MET 14 38.93 -85.64 16 A PHE 18 151.87 108.86 16 A LEU 37 -59.88 89.74 16 A SER 40 -41.51 93.86 16 A TYR 42 -48.98 -19.05 16 A PHE 44 -158.09 14.34 16 A HIS 46 73.31 106.34 16 A THR 62 -148.04 28.07 16 A ASN 95 -143.09 -29.84 16 A PRO 98 -66.86 95.19 16 A LEU 108 -91.42 -67.13 16 A GLU 110 -95.47 -158.77 17 A ASP 4 -176.94 -85.37 17 A LYS 6 48.66 81.77 17 A MET 14 34.97 -86.10 17 A MET 16 68.62 76.79 17 A PHE 18 147.69 97.46 17 A LEU 37 -56.54 90.27 17 A SER 40 -39.39 103.62 17 A PHE 44 -153.53 -5.73 17 A TYR 45 -69.77 68.12 17 A HIS 46 74.49 140.20 17 A LEU 96 58.62 -9.81 17 A PRO 98 -55.31 102.76 17 A LEU 108 -91.19 -63.22 18 A MET 3 -172.38 -52.26 18 A MET 16 64.94 74.13 18 A PHE 18 157.28 108.44 18 A LEU 37 -60.13 90.21 18 A SER 40 -36.32 102.37 18 A TYR 42 -47.75 -18.02 18 A GLU 43 -65.08 -70.72 18 A TYR 45 -65.77 63.98 18 A HIS 46 71.24 134.49 18 A THR 62 -147.74 20.66 18 A ALA 75 60.43 -163.74 18 A LEU 96 49.73 25.27 18 A PRO 98 -57.90 102.57 18 A LEU 108 -99.65 -66.07 19 A ASP 4 65.18 -78.77 19 A MET 14 33.71 -85.74 19 A MET 16 65.64 72.95 19 A PHE 18 155.12 111.61 19 A LEU 37 -69.02 93.99 19 A PHE 44 -155.47 -0.96 19 A HIS 46 71.81 109.22 19 A ALA 75 -80.23 -157.69 19 A LEU 96 49.31 28.27 19 A PRO 98 -54.45 96.26 19 A LEU 108 -94.89 -80.22 20 A MET 14 34.21 -77.20 20 A MET 16 71.53 34.03 20 A PHE 18 161.32 129.83 20 A LEU 37 9.14 -115.84 20 A PHE 44 -156.73 -11.06 20 A TYR 45 -61.84 73.39 20 A HIS 46 64.54 95.29 20 A HIS 77 -93.96 31.10 20 A PRO 98 -55.33 97.72 20 A LEU 108 -113.15 -74.09 20 A GLU 110 -86.70 -153.45 20 A LYS 113 -110.09 78.95 NMR structure of the C-terminal PAS domain of HIF2a 1 N N A ARG 24 A ARG 24 HELX_P A ILE 29 A ILE 29 1 1 6 A HIS 32 A HIS 32 HELX_P A LEU 37 A LEU 37 1 2 6 A SER 40 A SER 40 HELX_P A PHE 44 A PHE 44 5 3 5 A ASP 49 A ASP 49 HELX_P A CYS 61 A CYS 61 1 4 13 TRANSCRIPTION Mixed alpha-beta fold, TRANSCRIPTION EPAS1_HUMAN UNP 1 240 Q99814 DSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWL ETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN 240 350 1P97 4 114 Q99814 A 1 4 114 1 cloning artifact GLY 1 1P97 A Q99814 UNP 1 1 cloning artifact ALA 2 1P97 A Q99814 UNP 2 1 cloning artifact MET 3 1P97 A Q99814 UNP 3 5 anti-parallel anti-parallel anti-parallel anti-parallel A TYR 20 A TYR 20 A CYS 21 A CYS 21 A LYS 6 A LYS 6 A HIS 12 A HIS 12 A PRO 98 A PRO 98 A GLU 112 A GLU 112 A TYR 80 A TYR 80 A TYR 91 A TYR 91 A GLN 65 A GLN 65 A LEU 74 A LEU 74