0.024694
0.000000
0.000000
0.000000
0.013535
0.000000
0.000000
0.000000
0.010841
0.00000
0.00000
0.00000
Zhang, R.
Zhou, M.
Joachimiak, G.
Schneewind, O.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
40.496
73.883
92.246
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
43
16193
16202
10.1021/bi048877o
15610013
The membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus binds the dipeptide GlyMet via side chain interactions.
2004
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2003-02-05
SBC-2
Si 111 channel
MAD
M
x-ray
1
0.9795
1.0
0.9798
1.0
0.94656
1.0
19-ID
APS
0.9795, 0.9798, 0.94656
SYNCHROTRON
APS BEAMLINE 19-ID
32512.902
Hypothetical protein PG110
Residues 19-280
1
man
polymer
75.067
GLYCINE
1
syn
non-polymer
149.211
METHIONINE
1
syn
non-polymer
18.015
water
292
nat
water
no
no
MGHHHHHHDYDIPTTENLYFQGAHMGIQRPTSTGSNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDYNLPNK
ALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAG
LIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIV
AVNDKDLDNKTYAKIVELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK
MGHHHHHHDYDIPTTENLYFQGAHMGIQRPTSTGSNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDYNLPNK
ALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAG
LIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIV
AVNDKDLDNKTYAKIVELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK
A
APC009
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Staphylococcus
Staphylococcus aureus
subsp. aureus Mu50
Escherichia
Escherichia coli
sample
SA0422
158878
Staphylococcus aureus subsp. aureus Mu50
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PLASMID
PDM 68
1
2.12
42.02
VAPOR DIFFUSION, HANGING DROP
7.0
50mM Ammonium Sulfate, 30% pentaerythritol ethoxylate, 50 mM Bis/Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
software
repository
Initial release
Version format compliance
Version format compliance
Refinement description
1
0
2004-01-20
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
_software.name
Y
RCSB
Y
RCSB
2003-05-09
REL
REL
GLY
GLYCINE
MET
METHIONINE
HOH
water
GLY
300
2
GLY
GLY
300
A
MET
301
3
MET
MET
301
A
TIP
401
4
HOH
HOH
401
A
TIP
402
4
HOH
HOH
402
A
TIP
403
4
HOH
HOH
403
A
TIP
404
4
HOH
HOH
404
A
TIP
405
4
HOH
HOH
405
A
TIP
406
4
HOH
HOH
406
A
TIP
407
4
HOH
HOH
407
A
TIP
408
4
HOH
HOH
408
A
TIP
409
4
HOH
HOH
409
A
TIP
410
4
HOH
HOH
410
A
TIP
411
4
HOH
HOH
411
A
TIP
412
4
HOH
HOH
412
A
TIP
413
4
HOH
HOH
413
A
TIP
414
4
HOH
HOH
414
A
TIP
415
4
HOH
HOH
415
A
TIP
416
4
HOH
HOH
416
A
TIP
417
4
HOH
HOH
417
A
TIP
418
4
HOH
HOH
418
A
TIP
419
4
HOH
HOH
419
A
TIP
420
4
HOH
HOH
420
A
TIP
421
4
HOH
HOH
421
A
TIP
422
4
HOH
HOH
422
A
TIP
423
4
HOH
HOH
423
A
TIP
424
4
HOH
HOH
424
A
TIP
425
4
HOH
HOH
425
A
TIP
426
4
HOH
HOH
426
A
TIP
427
4
HOH
HOH
427
A
TIP
428
4
HOH
HOH
428
A
TIP
429
4
HOH
HOH
429
A
TIP
430
4
HOH
HOH
430
A
TIP
431
4
HOH
HOH
431
A
TIP
432
4
HOH
HOH
432
A
TIP
433
4
HOH
HOH
433
A
TIP
434
4
HOH
HOH
434
A
TIP
435
4
HOH
HOH
435
A
TIP
436
4
HOH
HOH
436
A
TIP
437
4
HOH
HOH
437
A
TIP
438
4
HOH
HOH
438
A
TIP
439
4
HOH
HOH
439
A
TIP
440
4
HOH
HOH
440
A
TIP
441
4
HOH
HOH
441
A
TIP
442
4
HOH
HOH
442
A
TIP
443
4
HOH
HOH
443
A
TIP
444
4
HOH
HOH
444
A
TIP
445
4
HOH
HOH
445
A
TIP
446
4
HOH
HOH
446
A
TIP
447
4
HOH
HOH
447
A
TIP
448
4
HOH
HOH
448
A
TIP
449
4
HOH
HOH
449
A
TIP
450
4
HOH
HOH
450
A
TIP
451
4
HOH
HOH
451
A
TIP
452
4
HOH
HOH
452
A
TIP
453
4
HOH
HOH
453
A
TIP
454
4
HOH
HOH
454
A
TIP
455
4
HOH
HOH
455
A
TIP
456
4
HOH
HOH
456
A
TIP
457
4
HOH
HOH
457
A
TIP
458
4
HOH
HOH
458
A
TIP
459
4
HOH
HOH
459
A
TIP
460
4
HOH
HOH
460
A
TIP
461
4
HOH
HOH
461
A
TIP
462
4
HOH
HOH
462
A
TIP
463
4
HOH
HOH
463
A
TIP
464
4
HOH
HOH
464
A
TIP
465
4
HOH
HOH
465
A
TIP
466
4
HOH
HOH
466
A
TIP
467
4
HOH
HOH
467
A
TIP
468
4
HOH
HOH
468
A
TIP
469
4
HOH
HOH
469
A
TIP
470
4
HOH
HOH
470
A
TIP
471
4
HOH
HOH
471
A
TIP
472
4
HOH
HOH
472
A
TIP
473
4
HOH
HOH
473
A
TIP
474
4
HOH
HOH
474
A
TIP
475
4
HOH
HOH
475
A
TIP
476
4
HOH
HOH
476
A
TIP
477
4
HOH
HOH
477
A
TIP
478
4
HOH
HOH
478
A
TIP
479
4
HOH
HOH
479
A
TIP
480
4
HOH
HOH
480
A
TIP
481
4
HOH
HOH
481
A
TIP
482
4
HOH
HOH
482
A
TIP
483
4
HOH
HOH
483
A
TIP
484
4
HOH
HOH
484
A
TIP
485
4
HOH
HOH
485
A
TIP
486
4
HOH
HOH
486
A
TIP
487
4
HOH
HOH
487
A
TIP
488
4
HOH
HOH
488
A
TIP
489
4
HOH
HOH
489
A
TIP
490
4
HOH
HOH
490
A
TIP
491
4
HOH
HOH
491
A
TIP
492
4
HOH
HOH
492
A
TIP
493
4
HOH
HOH
493
A
TIP
494
4
HOH
HOH
494
A
TIP
495
4
HOH
HOH
495
A
TIP
496
4
HOH
HOH
496
A
TIP
497
4
HOH
HOH
497
A
TIP
498
4
HOH
HOH
498
A
TIP
499
4
HOH
HOH
499
A
TIP
500
4
HOH
HOH
500
A
TIP
501
4
HOH
HOH
501
A
TIP
502
4
HOH
HOH
502
A
TIP
503
4
HOH
HOH
503
A
TIP
504
4
HOH
HOH
504
A
TIP
505
4
HOH
HOH
505
A
TIP
506
4
HOH
HOH
506
A
TIP
507
4
HOH
HOH
507
A
TIP
508
4
HOH
HOH
508
A
TIP
509
4
HOH
HOH
509
A
TIP
510
4
HOH
HOH
510
A
TIP
511
4
HOH
HOH
511
A
TIP
512
4
HOH
HOH
512
A
TIP
513
4
HOH
HOH
513
A
TIP
514
4
HOH
HOH
514
A
TIP
515
4
HOH
HOH
515
A
TIP
516
4
HOH
HOH
516
A
TIP
517
4
HOH
HOH
517
A
TIP
518
4
HOH
HOH
518
A
TIP
519
4
HOH
HOH
519
A
TIP
520
4
HOH
HOH
520
A
TIP
521
4
HOH
HOH
521
A
TIP
522
4
HOH
HOH
522
A
TIP
523
4
HOH
HOH
523
A
TIP
524
4
HOH
HOH
524
A
TIP
525
4
HOH
HOH
525
A
TIP
526
4
HOH
HOH
526
A
TIP
527
4
HOH
HOH
527
A
TIP
528
4
HOH
HOH
528
A
TIP
529
4
HOH
HOH
529
A
TIP
530
4
HOH
HOH
530
A
TIP
531
4
HOH
HOH
531
A
TIP
532
4
HOH
HOH
532
A
TIP
533
4
HOH
HOH
533
A
TIP
534
4
HOH
HOH
534
A
TIP
535
4
HOH
HOH
535
A
TIP
536
4
HOH
HOH
536
A
TIP
537
4
HOH
HOH
537
A
TIP
538
4
HOH
HOH
538
A
TIP
539
4
HOH
HOH
539
A
TIP
540
4
HOH
HOH
540
A
TIP
541
4
HOH
HOH
541
A
TIP
542
4
HOH
HOH
542
A
TIP
543
4
HOH
HOH
543
A
TIP
544
4
HOH
HOH
544
A
TIP
545
4
HOH
HOH
545
A
TIP
546
4
HOH
HOH
546
A
TIP
547
4
HOH
HOH
547
A
TIP
548
4
HOH
HOH
548
A
TIP
549
4
HOH
HOH
549
A
TIP
550
4
HOH
HOH
550
A
TIP
551
4
HOH
HOH
551
A
TIP
552
4
HOH
HOH
552
A
TIP
553
4
HOH
HOH
553
A
TIP
554
4
HOH
HOH
554
A
TIP
555
4
HOH
HOH
555
A
TIP
556
4
HOH
HOH
556
A
TIP
557
4
HOH
HOH
557
A
TIP
558
4
HOH
HOH
558
A
TIP
559
4
HOH
HOH
559
A
TIP
560
4
HOH
HOH
560
A
TIP
561
4
HOH
HOH
561
A
TIP
562
4
HOH
HOH
562
A
TIP
563
4
HOH
HOH
563
A
TIP
564
4
HOH
HOH
564
A
TIP
565
4
HOH
HOH
565
A
TIP
566
4
HOH
HOH
566
A
TIP
567
4
HOH
HOH
567
A
TIP
568
4
HOH
HOH
568
A
TIP
569
4
HOH
HOH
569
A
TIP
570
4
HOH
HOH
570
A
TIP
571
4
HOH
HOH
571
A
TIP
572
4
HOH
HOH
572
A
TIP
573
4
HOH
HOH
573
A
TIP
574
4
HOH
HOH
574
A
TIP
575
4
HOH
HOH
575
A
TIP
576
4
HOH
HOH
576
A
TIP
577
4
HOH
HOH
577
A
TIP
578
4
HOH
HOH
578
A
TIP
579
4
HOH
HOH
579
A
TIP
580
4
HOH
HOH
580
A
TIP
581
4
HOH
HOH
581
A
TIP
582
4
HOH
HOH
582
A
TIP
583
4
HOH
HOH
583
A
TIP
584
4
HOH
HOH
584
A
TIP
585
4
HOH
HOH
585
A
TIP
586
4
HOH
HOH
586
A
TIP
587
4
HOH
HOH
587
A
TIP
588
4
HOH
HOH
588
A
TIP
589
4
HOH
HOH
589
A
TIP
590
4
HOH
HOH
590
A
TIP
591
4
HOH
HOH
591
A
TIP
592
4
HOH
HOH
592
A
TIP
593
4
HOH
HOH
593
A
TIP
594
4
HOH
HOH
594
A
TIP
595
4
HOH
HOH
595
A
TIP
596
4
HOH
HOH
596
A
TIP
597
4
HOH
HOH
597
A
TIP
598
4
HOH
HOH
598
A
TIP
599
4
HOH
HOH
599
A
TIP
600
4
HOH
HOH
600
A
TIP
601
4
HOH
HOH
601
A
TIP
602
4
HOH
HOH
602
A
TIP
603
4
HOH
HOH
603
A
TIP
604
4
HOH
HOH
604
A
TIP
605
4
HOH
HOH
605
A
TIP
606
4
HOH
HOH
606
A
TIP
607
4
HOH
HOH
607
A
TIP
608
4
HOH
HOH
608
A
TIP
609
4
HOH
HOH
609
A
TIP
610
4
HOH
HOH
610
A
TIP
611
4
HOH
HOH
611
A
TIP
612
4
HOH
HOH
612
A
TIP
613
4
HOH
HOH
613
A
TIP
614
4
HOH
HOH
614
A
TIP
615
4
HOH
HOH
615
A
TIP
616
4
HOH
HOH
616
A
TIP
617
4
HOH
HOH
617
A
TIP
618
4
HOH
HOH
618
A
TIP
619
4
HOH
HOH
619
A
TIP
620
4
HOH
HOH
620
A
TIP
621
4
HOH
HOH
621
A
TIP
622
4
HOH
HOH
622
A
TIP
623
4
HOH
HOH
623
A
TIP
624
4
HOH
HOH
624
A
TIP
625
4
HOH
HOH
625
A
TIP
626
4
HOH
HOH
626
A
TIP
627
4
HOH
HOH
627
A
TIP
628
4
HOH
HOH
628
A
TIP
629
4
HOH
HOH
629
A
TIP
630
4
HOH
HOH
630
A
TIP
631
4
HOH
HOH
631
A
TIP
632
4
HOH
HOH
632
A
TIP
633
4
HOH
HOH
633
A
TIP
634
4
HOH
HOH
634
A
TIP
635
4
HOH
HOH
635
A
TIP
636
4
HOH
HOH
636
A
TIP
637
4
HOH
HOH
637
A
TIP
638
4
HOH
HOH
638
A
TIP
639
4
HOH
HOH
639
A
TIP
640
4
HOH
HOH
640
A
TIP
641
4
HOH
HOH
641
A
TIP
642
4
HOH
HOH
642
A
TIP
643
4
HOH
HOH
643
A
TIP
644
4
HOH
HOH
644
A
TIP
645
4
HOH
HOH
645
A
TIP
646
4
HOH
HOH
646
A
TIP
647
4
HOH
HOH
647
A
TIP
648
4
HOH
HOH
648
A
TIP
649
4
HOH
HOH
649
A
TIP
650
4
HOH
HOH
650
A
TIP
651
4
HOH
HOH
651
A
TIP
652
4
HOH
HOH
652
A
TIP
653
4
HOH
HOH
653
A
TIP
654
4
HOH
HOH
654
A
TIP
655
4
HOH
HOH
655
A
TIP
656
4
HOH
HOH
656
A
TIP
657
4
HOH
HOH
657
A
TIP
658
4
HOH
HOH
658
A
TIP
659
4
HOH
HOH
659
A
TIP
660
4
HOH
HOH
660
A
TIP
661
4
HOH
HOH
661
A
TIP
662
4
HOH
HOH
662
A
TIP
663
4
HOH
HOH
663
A
TIP
664
4
HOH
HOH
664
A
TIP
665
4
HOH
HOH
665
A
TIP
666
4
HOH
HOH
666
A
TIP
667
4
HOH
HOH
667
A
TIP
668
4
HOH
HOH
668
A
TIP
669
4
HOH
HOH
669
A
TIP
670
4
HOH
HOH
670
A
TIP
671
4
HOH
HOH
671
A
TIP
672
4
HOH
HOH
672
A
TIP
673
4
HOH
HOH
673
A
TIP
674
4
HOH
HOH
674
A
TIP
675
4
HOH
HOH
675
A
TIP
676
4
HOH
HOH
676
A
TIP
677
4
HOH
HOH
677
A
TIP
678
4
HOH
HOH
678
A
TIP
679
4
HOH
HOH
679
A
TIP
680
4
HOH
HOH
680
A
TIP
681
4
HOH
HOH
681
A
TIP
682
4
HOH
HOH
682
A
TIP
683
4
HOH
HOH
683
A
TIP
684
4
HOH
HOH
684
A
TIP
685
4
HOH
HOH
685
A
TIP
686
4
HOH
HOH
686
A
TIP
687
4
HOH
HOH
687
A
TIP
688
4
HOH
HOH
688
A
TIP
689
4
HOH
HOH
689
A
TIP
690
4
HOH
HOH
690
A
TIP
691
4
HOH
HOH
691
A
TIP
692
4
HOH
HOH
692
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
LYS
40
n
40
LYS
40
A
VAL
41
n
41
VAL
41
A
THR
42
n
42
THR
42
A
ILE
43
n
43
ILE
43
A
GLY
44
n
44
GLY
44
A
VAL
45
n
45
VAL
45
A
ALA
46
n
46
ALA
46
A
SER
47
n
47
SER
47
A
ASN
48
n
48
ASN
48
A
ASP
49
n
49
ASP
49
A
THR
50
n
50
THR
50
A
LYS
51
n
51
LYS
51
A
ALA
52
n
52
ALA
52
A
TRP
53
n
53
TRP
53
A
GLU
54
n
54
GLU
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
LYS
57
n
57
LYS
57
A
GLU
58
n
58
GLU
58
A
LEU
59
n
59
LEU
59
A
ALA
60
n
60
ALA
60
A
LYS
61
n
61
LYS
61
A
LYS
62
n
62
LYS
62
A
ASP
63
n
63
ASP
63
A
ASP
64
n
64
ASP
64
A
ILE
65
n
65
ILE
65
A
ASP
66
n
66
ASP
66
A
VAL
67
n
67
VAL
67
A
GLU
68
n
68
GLU
68
A
ILE
69
n
69
ILE
69
A
LYS
70
n
70
LYS
70
A
HIS
71
n
71
HIS
71
A
PHE
72
n
72
PHE
72
A
SER
73
n
73
SER
73
A
ASP
74
n
74
ASP
74
A
TYR
75
n
75
TYR
75
A
ASN
76
n
76
ASN
76
A
LEU
77
n
77
LEU
77
A
PRO
78
n
78
PRO
78
A
ASN
79
n
79
ASN
79
A
LYS
80
n
80
LYS
80
A
ALA
81
n
81
ALA
81
A
LEU
82
n
82
LEU
82
A
ASN
83
n
83
ASN
83
A
ASP
84
n
84
ASP
84
A
GLY
85
n
85
GLY
85
A
ASP
86
n
86
ASP
86
A
ILE
87
n
87
ILE
87
A
ASP
88
n
88
ASP
88
A
MET
89
n
89
MET
89
A
ASN
90
n
90
ASN
90
A
ALA
91
n
91
ALA
91
A
PHE
92
n
92
PHE
92
A
GLN
93
n
93
GLN
93
A
HIS
94
n
94
HIS
94
A
PHE
95
n
95
PHE
95
A
ALA
96
n
96
ALA
96
A
PHE
97
n
97
PHE
97
A
LEU
98
n
98
LEU
98
A
ASP
99
n
99
ASP
99
A
GLN
100
n
100
GLN
100
A
TYR
101
n
101
TYR
101
A
LYS
102
n
102
LYS
102
A
LYS
103
n
103
LYS
103
A
ALA
104
n
104
ALA
104
A
HIS
105
n
105
HIS
105
A
LYS
106
n
106
LYS
106
A
GLY
107
n
107
GLY
107
A
THR
108
n
108
THR
108
A
LYS
109
n
109
LYS
109
A
ILE
110
n
110
ILE
110
A
SER
111
n
111
SER
111
A
ALA
112
n
112
ALA
112
A
LEU
113
n
113
LEU
113
A
SER
114
n
114
SER
114
A
THR
115
n
115
THR
115
A
THR
116
n
116
THR
116
A
VAL
117
n
117
VAL
117
A
LEU
118
n
118
LEU
118
A
ALA
119
n
119
ALA
119
A
PRO
120
n
120
PRO
120
A
LEU
121
n
121
LEU
121
A
GLY
122
n
122
GLY
122
A
ILE
123
n
123
ILE
123
A
TYR
124
n
124
TYR
124
A
SER
125
n
125
SER
125
A
ASP
126
n
126
ASP
126
A
LYS
127
n
127
LYS
127
A
ILE
128
n
128
ILE
128
A
LYS
129
n
129
LYS
129
A
ASP
130
n
130
ASP
130
A
VAL
131
n
131
VAL
131
A
LYS
132
n
132
LYS
132
A
LYS
133
n
133
LYS
133
A
VAL
134
n
134
VAL
134
A
LYS
135
n
135
LYS
135
A
ASP
136
n
136
ASP
136
A
GLY
137
n
137
GLY
137
A
ALA
138
n
138
ALA
138
A
LYS
139
n
139
LYS
139
A
VAL
140
n
140
VAL
140
A
VAL
141
n
141
VAL
141
A
ILE
142
n
142
ILE
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ASP
145
n
145
ASP
145
A
VAL
146
n
146
VAL
146
A
SER
147
n
147
SER
147
A
ASN
148
n
148
ASN
148
A
GLN
149
n
149
GLN
149
A
ALA
150
n
150
ALA
150
A
ARG
151
n
151
ARG
151
A
ALA
152
n
152
ALA
152
A
LEU
153
n
153
LEU
153
A
LYS
154
n
154
LYS
154
A
LEU
155
n
155
LEU
155
A
LEU
156
n
156
LEU
156
A
GLU
157
n
157
GLU
157
A
ALA
158
n
158
ALA
158
A
ALA
159
n
159
ALA
159
A
GLY
160
n
160
GLY
160
A
LEU
161
n
161
LEU
161
A
ILE
162
n
162
ILE
162
A
LYS
163
n
163
LYS
163
A
LEU
164
n
164
LEU
164
A
LYS
165
n
165
LYS
165
A
LYS
166
n
166
LYS
166
A
ASP
167
n
167
ASP
167
A
PHE
168
n
168
PHE
168
A
GLY
169
n
169
GLY
169
A
LEU
170
n
170
LEU
170
A
ALA
171
n
171
ALA
171
A
GLY
172
n
172
GLY
172
A
THR
173
n
173
THR
173
A
VAL
174
n
174
VAL
174
A
LYS
175
n
175
LYS
175
A
ASP
176
n
176
ASP
176
A
ILE
177
n
177
ILE
177
A
THR
178
n
178
THR
178
A
SER
179
n
179
SER
179
A
ASN
180
n
180
ASN
180
A
PRO
181
n
181
PRO
181
A
LYS
182
n
182
LYS
182
A
HIS
183
n
183
HIS
183
A
LEU
184
n
184
LEU
184
A
LYS
185
n
185
LYS
185
A
ILE
186
n
186
ILE
186
A
THR
187
n
187
THR
187
A
ALA
188
n
188
ALA
188
A
VAL
189
n
189
VAL
189
A
ASP
190
n
190
ASP
190
A
ALA
191
n
191
ALA
191
A
GLN
192
n
192
GLN
192
A
GLN
193
n
193
GLN
193
A
THR
194
n
194
THR
194
A
ALA
195
n
195
ALA
195
A
ARG
196
n
196
ARG
196
A
ALA
197
n
197
ALA
197
A
LEU
198
n
198
LEU
198
A
SER
199
n
199
SER
199
A
ASP
200
n
200
ASP
200
A
VAL
201
n
201
VAL
201
A
ASP
202
n
202
ASP
202
A
ILE
203
n
203
ILE
203
A
ALA
204
n
204
ALA
204
A
VAL
205
n
205
VAL
205
A
ILE
206
n
206
ILE
206
A
ASN
207
n
207
ASN
207
A
ASN
208
n
208
ASN
208
A
GLY
209
n
209
GLY
209
A
VAL
210
n
210
VAL
210
A
ALA
211
n
211
ALA
211
A
THR
212
n
212
THR
212
A
LYS
213
n
213
LYS
213
A
ALA
214
n
214
ALA
214
A
GLY
215
n
215
GLY
215
A
LYS
216
n
216
LYS
216
A
ASP
217
n
217
ASP
217
A
PRO
218
n
218
PRO
218
A
LYS
219
n
219
LYS
219
A
ASN
220
n
220
ASN
220
A
ASP
221
n
221
ASP
221
A
PRO
222
n
222
PRO
222
A
ILE
223
n
223
ILE
223
A
PHE
224
n
224
PHE
224
A
LEU
225
n
225
LEU
225
A
GLU
226
n
226
GLU
226
A
LYS
227
n
227
LYS
227
A
SER
228
n
228
SER
228
A
ASN
229
n
229
ASN
229
A
SER
230
n
230
SER
230
A
ASP
231
n
231
ASP
231
A
ALA
232
n
232
ALA
232
A
VAL
233
n
233
VAL
233
A
LYS
234
n
234
LYS
234
A
PRO
235
n
235
PRO
235
A
TYR
236
n
236
TYR
236
A
ILE
237
n
237
ILE
237
A
ASN
238
n
238
ASN
238
A
ILE
239
n
239
ILE
239
A
VAL
240
n
240
VAL
240
A
ALA
241
n
241
ALA
241
A
VAL
242
n
242
VAL
242
A
ASN
243
n
243
ASN
243
A
ASP
244
n
244
ASP
244
A
LYS
245
n
245
LYS
245
A
ASP
246
n
246
ASP
246
A
LEU
247
n
247
LEU
247
A
ASP
248
n
248
ASP
248
A
ASN
249
n
249
ASN
249
A
LYS
250
n
250
LYS
250
A
THR
251
n
251
THR
251
A
TYR
252
n
252
TYR
252
A
ALA
253
n
253
ALA
253
A
LYS
254
n
254
LYS
254
A
ILE
255
n
255
ILE
255
A
VAL
256
n
256
VAL
256
A
GLU
257
n
257
GLU
257
A
LEU
258
n
258
LEU
258
A
TYR
259
n
259
TYR
259
A
HIS
260
n
260
HIS
260
A
SER
261
n
261
SER
261
A
LYS
262
n
262
LYS
262
A
GLU
263
n
263
GLU
263
A
ALA
264
n
264
ALA
264
A
GLN
265
n
265
GLN
265
A
LYS
266
n
266
LYS
266
A
ALA
267
n
267
ALA
267
A
LEU
268
n
268
LEU
268
A
GLN
269
n
269
GLN
269
A
GLU
270
n
270
GLU
270
A
ASP
271
n
271
ASP
271
A
VAL
272
n
272
VAL
272
A
LYS
273
n
273
LYS
273
A
ASP
274
n
274
ASP
274
A
GLY
275
n
275
GLY
275
A
GLU
276
n
276
GLU
276
A
LYS
277
n
277
LYS
277
A
PRO
278
n
278
PRO
278
A
VAL
279
n
279
VAL
279
A
ASN
280
n
280
ASN
280
A
LEU
281
n
281
LEU
281
A
SER
282
n
282
SER
282
A
LYS
283
n
283
LYS
283
A
ASP
284
n
284
ASP
284
A
GLU
285
n
285
GLU
285
A
ILE
286
n
286
ILE
286
A
LYS
287
n
287
LYS
287
A
ALA
288
n
288
ALA
288
A
ILE
289
n
289
ILE
289
A
GLU
290
n
290
GLU
290
A
THR
291
n
291
THR
291
A
SER
292
n
292
SER
292
A
LEU
293
n
293
LEU
293
A
ALA
294
n
294
ALA
294
A
n
295
295
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
70
A
O
LYS
70
A
N
ILE
43
A
N
ILE
43
A
N
GLY
44
A
N
GLY
44
A
O
MET
89
A
O
MET
89
A
N
GLN
93
A
N
GLN
93
A
O
ILE
239
A
O
ILE
239
A
O
VAL
240
A
O
VAL
240
A
N
SER
114
A
N
SER
114
A
N
LEU
118
A
N
LEU
118
A
O
LYS
277
A
O
LYS
277
A
O
THR
187
A
O
THR
187
A
N
VAL
140
A
N
VAL
140
A
N
VAL
141
A
N
VAL
141
A
O
VAL
205
A
O
VAL
205
A
O
ALA
204
A
O
ALA
204
A
N
TYR
124
A
N
TYR
124
A
N
ILE
123
A
N
ILE
123
A
O
PHE
224
A
O
PHE
224
A
N
LYS
163
A
N
LYS
163
A
O
THR
178
A
O
THR
178
1
A
MET
1
A
MET
1
1
Y
1
A
GLY
2
A
GLY
2
1
Y
1
A
HIS
3
A
HIS
3
1
Y
1
A
HIS
4
A
HIS
4
1
Y
1
A
HIS
5
A
HIS
5
1
Y
1
A
HIS
6
A
HIS
6
1
Y
1
A
HIS
7
A
HIS
7
1
Y
1
A
HIS
8
A
HIS
8
1
Y
1
A
ASP
9
A
ASP
9
1
Y
1
A
TYR
10
A
TYR
10
1
Y
1
A
ASP
11
A
ASP
11
1
Y
1
A
ILE
12
A
ILE
12
1
Y
1
A
PRO
13
A
PRO
13
1
Y
1
A
THR
14
A
THR
14
1
Y
1
A
THR
15
A
THR
15
1
Y
1
A
GLU
16
A
GLU
16
1
Y
1
A
ASN
17
A
ASN
17
1
Y
1
A
LEU
18
A
LEU
18
1
Y
1
A
TYR
19
A
TYR
19
1
Y
1
A
PHE
20
A
PHE
20
1
Y
1
A
GLN
21
A
GLN
21
1
Y
1
A
GLY
22
A
GLY
22
1
Y
1
A
ALA
23
A
ALA
23
1
Y
1
A
HIS
24
A
HIS
24
1
Y
1
A
MET
25
A
MET
25
1
Y
1
A
GLY
26
A
GLY
26
1
Y
1
A
ILE
27
A
ILE
27
1
Y
1
A
GLN
28
A
GLN
28
1
Y
1
A
ARG
29
A
ARG
29
1
Y
1
A
PRO
30
A
PRO
30
1
Y
1
A
THR
31
A
THR
31
1
Y
1
A
SER
32
A
SER
32
1
Y
1
A
THR
33
A
THR
33
1
Y
1
A
GLY
34
A
GLY
34
1
Y
1
A
SER
35
A
SER
35
1
Y
1
A
ASN
36
A
ASN
36
1
Y
1
A
ASN
37
A
ASN
37
1
Y
1
A
ASP
38
A
ASP
38
1
Y
1
A
LYS
39
A
LYS
39
1
Y
1
A
LYS
295
A
LYS
295
1
Y
1
A
PHE
92
-155.52
-11.73
1
A
LYS
273
53.78
-127.41
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
26.5
2.92
0.00
0.00
3.18
0.00
-6.10
Friedel pairs were used in the refinement.
0.236
0.005
0.2
0.2
1.70
28.83
2733
58916
55440
4.9
94.1
RANDOM
523168.40
523168.40
0
1
RESTRAINED
THROUGHOUT
0
MAD
Engh & Huber
FLAT MODEL
55.4104
0.381729
0.23
0.21
5
0.19
0.24
1.70
28.83
292
2268
13
0
1963
0.006
1.3
22.6
0.81
0.94
1.50
1.62
2.00
1.50
2.00
2.40
2.50
0.316
0.017
0.305
1.81
362
7699
6
4.5
82.4
19.8
1.7
50
1P99
31444
31255
4.0
4.0
0.069
1
38.87
10.45
99.4
0.555
1.70
1.76
2.60
3002
7.11
97.1
refinement
CNS
0.9
data reduction
d*TREK
data scaling
HKL-2000
phasing
CNS
Hypothetical protein PG110
1.7A crystal structure of protein PG110 from Staphylococcus aureus
1
N
N
2
N
N
3
N
N
4
N
N
This protein existed as monomer,
Chain B (gly-met) is the peptide which
naturaly binding to this protein
A
THR
50
A
THR
50
HELX_P
A
LYS
61
A
LYS
61
1
1
12
A
LYS
62
A
LYS
62
HELX_P
A
ASP
64
A
ASP
64
5
2
3
A
LEU
77
A
LEU
77
HELX_P
A
ASP
84
A
ASP
84
1
3
8
A
PHE
95
A
PHE
95
HELX_P
A
HIS
105
A
HIS
105
1
4
11
A
ASP
130
A
ASP
130
HELX_P
A
VAL
134
A
VAL
134
5
5
5
A
ASP
145
A
ASP
145
HELX_P
A
ALA
159
A
ALA
159
1
6
15
A
THR
173
A
THR
173
HELX_P
A
LYS
175
A
LYS
175
5
7
3
A
ASP
190
A
ASP
190
HELX_P
A
THR
194
A
THR
194
5
8
5
A
ALA
195
A
ALA
195
HELX_P
A
ASP
200
A
ASP
200
5
9
6
A
ASN
207
A
ASN
207
HELX_P
A
ALA
214
A
ALA
214
1
10
8
A
SER
230
A
SER
230
HELX_P
A
PRO
235
A
PRO
235
5
11
6
A
LYS
245
A
LYS
245
HELX_P
A
LEU
247
A
LEU
247
5
12
3
A
ASN
249
A
ASN
249
HELX_P
A
SER
261
A
SER
261
1
13
13
A
SER
261
A
SER
261
HELX_P
A
LYS
273
A
LYS
273
1
14
13
A
SER
282
A
SER
282
HELX_P
A
ALA
294
A
ALA
294
1
15
13
covale
1.327
A
GLY
300
B
C
GLY
1_555
A
MET
301
C
N
MET
1_555
Structural genomics, unknown function
Structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function
NP_370988
GB
1
19
15923454
GSNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISAL
STTVLAPLGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQ
TARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKEAQKALQEDVK
DGEKPVNLSKDEIKAIETSLAK
19
280
1P99
34
295
15923454
A
1
34
295
1
CLONING ARTIFACT
MET
1
1P99
A
15923454
GB
1
1
CLONING ARTIFACT
GLY
2
1P99
A
15923454
GB
2
1
CLONING ARTIFACT
HIS
3
1P99
A
15923454
GB
3
1
CLONING ARTIFACT
HIS
4
1P99
A
15923454
GB
4
1
CLONING ARTIFACT
HIS
5
1P99
A
15923454
GB
5
1
CLONING ARTIFACT
HIS
6
1P99
A
15923454
GB
6
1
CLONING ARTIFACT
HIS
7
1P99
A
15923454
GB
7
1
CLONING ARTIFACT
HIS
8
1P99
A
15923454
GB
8
1
CLONING ARTIFACT
ASP
9
1P99
A
15923454
GB
9
1
CLONING ARTIFACT
TYR
10
1P99
A
15923454
GB
10
1
CLONING ARTIFACT
ASP
11
1P99
A
15923454
GB
11
1
CLONING ARTIFACT
ILE
12
1P99
A
15923454
GB
12
1
CLONING ARTIFACT
PRO
13
1P99
A
15923454
GB
13
1
CLONING ARTIFACT
THR
14
1P99
A
15923454
GB
14
1
CLONING ARTIFACT
THR
15
1P99
A
15923454
GB
15
1
CLONING ARTIFACT
GLU
16
1P99
A
15923454
GB
16
1
CLONING ARTIFACT
ASN
17
1P99
A
15923454
GB
17
1
CLONING ARTIFACT
LEU
18
1P99
A
15923454
GB
18
1
CLONING ARTIFACT
TYR
19
1P99
A
15923454
GB
19
1
CLONING ARTIFACT
PHE
20
1P99
A
15923454
GB
20
1
CLONING ARTIFACT
GLN
21
1P99
A
15923454
GB
21
1
CLONING ARTIFACT
GLY
22
1P99
A
15923454
GB
22
1
CLONING ARTIFACT
ALA
23
1P99
A
15923454
GB
23
1
CLONING ARTIFACT
HIS
24
1P99
A
15923454
GB
24
1
CLONING ARTIFACT
MET
25
1P99
A
15923454
GB
25
1
CLONING ARTIFACT
GLY
26
1P99
A
15923454
GB
26
1
CLONING ARTIFACT
ILE
27
1P99
A
15923454
GB
27
1
CLONING ARTIFACT
GLN
28
1P99
A
15923454
GB
28
1
CLONING ARTIFACT
ARG
29
1P99
A
15923454
GB
29
1
CLONING ARTIFACT
PRO
30
1P99
A
15923454
GB
30
1
CLONING ARTIFACT
THR
31
1P99
A
15923454
GB
31
1
CLONING ARTIFACT
SER
32
1P99
A
15923454
GB
32
1
CLONING ARTIFACT
THR
33
1P99
A
15923454
GB
33
6
5
2
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
67
A
VAL
67
A
HIS
71
A
HIS
71
A
VAL
41
A
VAL
41
A
VAL
45
A
VAL
45
A
MET
89
A
MET
89
A
HIS
94
A
HIS
94
A
ILE
237
A
ILE
237
A
ASN
243
A
ASN
243
A
ILE
110
A
ILE
110
A
LEU
118
A
LEU
118
A
LYS
277
A
LYS
277
A
PRO
278
A
PRO
278
A
LYS
185
A
LYS
185
A
VAL
189
A
VAL
189
A
LYS
139
A
LYS
139
A
PRO
143
A
PRO
143
A
ILE
203
A
ILE
203
A
ILE
206
A
ILE
206
A
GLY
122
A
GLY
122
A
TYR
124
A
TYR
124
A
PHE
224
A
PHE
224
A
LEU
225
A
LEU
225
A
LYS
163
A
LYS
163
A
LEU
164
A
LEU
164
A
ILE
177
A
ILE
177
A
SER
179
A
SER
179
BINDING SITE FOR RESIDUE GLY A 300
Software
7
BINDING SITE FOR RESIDUE MET A 301
Software
12
A
SER
47
A
SER
47
7
1_555
A
ALA
119
A
ALA
119
7
1_555
A
ASN
208
A
ASN
208
7
1_555
A
GLY
209
A
GLY
209
7
1_555
A
ASN
238
A
ASN
238
7
1_555
A
GLU
276
A
GLU
276
7
1_555
A
MET
301
C
MET
7
1_555
A
TYR
75
A
TYR
75
12
1_555
A
PHE
92
A
PHE
92
12
1_555
A
GLN
93
A
GLN
93
12
1_555
A
HIS
94
A
HIS
94
12
1_555
A
PHE
97
A
PHE
97
12
1_555
A
ASN
148
A
ASN
148
12
1_555
A
ARG
151
A
ARG
151
12
1_555
A
ASN
207
A
ASN
207
12
1_555
A
ASN
238
A
ASN
238
12
1_555
A
GLY
300
B
GLY
12
1_555
A
HOH
404
D
HOH
12
1_555
A
HOH
405
D
HOH
12
1_555
19
P 21 21 21