1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Mueller, T.D. Feigon, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking UK Embo J. EMJODG 0897 0261-4189 22 4634 4645 10.1093/emboj/cdg467 12970176 Structural determinants for the binding of ubiquitin-like domains to the proteasome. 2003 10.2210/pdb1p9c/pdb pdb_00001p9c 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 4916.343 26S proteasome non-ATPase regulatory subunit 4 C-terminal ubiquitin-interacting motif 1 man polymer 26S proteasome regulatory subunit S5A, Rpn10, Multiubiquitin chain binding protein, Antisecretory factor-1, AF, ASF no no MTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESAD MTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESAD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample PSMD4 OR MCB1 9606 Homo sapiens 562 Escherichia coli database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-10-07 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name High-resolution structure of the ubiquitin-like domain of HHR23A High-resolution structure of the complex of HHR23A ubiquitin-like domain and the C-terminal ubiquitin-interacting motif of proteasome subunit S5a RCSB Y RCSB 2003-05-10 REL The structure was determined using standard triple-resonance NMR spectroscopy techniques structures with the lowest energy 100 10 2D NOESY 3D_13C-separated_NOESY 150mM 6.5 ambient 300 K The structures are based on a total of 474 distance restraints, 452 are NOE-derived distance restraints, 22 are from hydrogen bonds simulated annealing 1 lowest energy 2mM S5a peptide, unlabeled 50mM sodium phosphate; 100mM sodium chloride; 5% D2O 2mM S5a peptide U-15N,13C 50mM sodium phosphate; 100mM sodium chloride; 5% D2O Bruker Karlsruhe processing XwinNMR 2.5 Neidig data analysis AURELIA 2.8.9 Brunger structure solution X-PLOR 3.1 Brunger refinement X-PLOR 3.1 500 Bruker DRX 600 Bruker DRX MET 263 n 1 MET 263 A THR 264 n 2 THR 264 A ILE 265 n 3 ILE 265 A SER 266 n 4 SER 266 A GLN 267 n 5 GLN 267 A GLN 268 n 6 GLN 268 A GLU 269 n 7 GLU 269 A PHE 270 n 8 PHE 270 A GLY 271 n 9 GLY 271 A ARG 272 n 10 ARG 272 A THR 273 n 11 THR 273 A GLY 274 n 12 GLY 274 A LEU 275 n 13 LEU 275 A PRO 276 n 14 PRO 276 A ASP 277 n 15 ASP 277 A LEU 278 n 16 LEU 278 A SER 279 n 17 SER 279 A SER 280 n 18 SER 280 A MET 281 n 19 MET 281 A THR 282 n 20 THR 282 A GLU 283 n 21 GLU 283 A GLU 284 n 22 GLU 284 A GLU 285 n 23 GLU 285 A GLN 286 n 24 GLN 286 A ILE 287 n 25 ILE 287 A ALA 288 n 26 ALA 288 A TYR 289 n 27 TYR 289 A ALA 290 n 28 ALA 290 A MET 291 n 29 MET 291 A GLN 292 n 30 GLN 292 A MET 293 n 31 MET 293 A SER 294 n 32 SER 294 A LEU 295 n 33 LEU 295 A GLN 296 n 34 GLN 296 A GLY 297 n 35 GLY 297 A ALA 298 n 36 ALA 298 A GLU 299 n 37 GLU 299 A PHE 300 n 38 PHE 300 A GLY 301 n 39 GLY 301 A GLN 302 n 40 GLN 302 A ALA 303 n 41 ALA 303 A GLU 304 n 42 GLU 304 A SER 305 n 43 SER 305 A ALA 306 n 44 ALA 306 A ASP 307 n 45 ASP 307 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ILE 265 174.44 -34.52 1 A SER 266 79.06 -75.12 1 A GLN 267 85.60 -46.31 1 A PHE 270 173.85 -65.24 1 A PRO 276 -56.21 -152.81 1 A ASP 277 -106.30 42.77 1 A THR 282 24.65 -84.62 1 A ALA 298 -179.18 -53.46 1 A GLU 304 -161.97 45.20 1 A SER 305 -152.38 45.56 2 A THR 264 -117.26 -85.28 2 A ILE 265 -61.86 -88.58 2 A SER 266 55.35 159.53 2 A GLU 269 173.49 63.09 2 A PHE 270 179.22 -32.80 2 A PRO 276 -87.34 -86.56 2 A ASP 277 73.84 -74.66 2 A LEU 278 84.11 -26.09 2 A SER 280 -147.99 25.25 2 A THR 282 22.58 -92.22 2 A ALA 298 168.19 -80.68 2 A GLU 299 164.25 94.77 2 A PHE 300 67.50 63.00 2 A ALA 306 85.26 -54.50 3 A ILE 265 -98.85 34.98 3 A GLU 269 43.04 29.76 3 A ARG 272 155.92 69.95 3 A LEU 275 115.32 -42.83 3 A ASP 277 36.37 46.99 3 A SER 280 -130.52 -34.26 3 A THR 282 21.48 -91.55 3 A LEU 295 35.30 32.56 3 A GLN 296 -154.12 29.09 3 A GLU 299 84.85 -61.11 3 A ALA 306 56.85 -167.42 4 A THR 264 -98.37 50.12 4 A GLN 268 36.81 48.95 4 A GLU 269 -153.72 67.90 4 A PHE 270 -173.97 -50.21 4 A ARG 272 154.64 -18.99 4 A THR 273 91.03 -24.65 4 A LEU 278 71.77 -18.51 4 A THR 282 24.69 -84.32 4 A GLU 299 58.48 85.90 4 A PHE 300 57.16 109.75 4 A GLN 302 -105.14 -81.42 4 A GLU 304 49.73 24.75 4 A ALA 306 -172.37 -171.30 5 A THR 264 -106.02 57.88 5 A ILE 265 177.05 -35.13 5 A SER 266 48.95 -168.08 5 A GLN 267 44.81 74.92 5 A ARG 272 55.38 17.68 5 A THR 273 35.71 47.23 5 A PRO 276 -78.76 -166.24 5 A LEU 278 70.70 -21.64 5 A THR 282 28.55 -87.21 5 A GLN 302 59.56 -86.57 5 A GLU 304 -158.61 -45.29 5 A SER 305 68.46 -177.23 5 A ALA 306 62.66 153.07 6 A THR 264 -104.71 -169.91 6 A ILE 265 -153.06 87.75 6 A SER 266 -60.56 -78.72 6 A GLN 267 40.35 28.68 6 A GLU 269 55.15 -90.79 6 A PHE 270 -166.39 44.27 6 A THR 273 85.48 -52.66 6 A LEU 278 80.38 -30.07 6 A SER 280 -143.69 14.74 6 A THR 282 16.76 -81.78 6 A GLN 296 -94.18 47.33 6 A ALA 298 82.08 18.95 6 A GLU 299 -175.92 43.18 6 A ALA 306 -61.63 -77.43 7 A THR 264 -108.16 51.21 7 A ILE 265 57.63 -86.54 7 A GLN 267 -130.36 -41.64 7 A GLN 268 66.82 150.98 7 A GLU 269 -153.76 29.42 7 A PHE 270 85.52 -10.89 7 A ARG 272 34.43 31.01 7 A THR 273 83.66 -60.04 7 A LEU 275 65.46 60.90 7 A ASP 277 29.91 84.65 7 A SER 279 94.10 52.82 7 A SER 280 134.35 -10.98 7 A MET 281 -25.91 -82.54 7 A THR 282 66.35 -160.11 7 A LEU 295 -104.54 63.75 7 A GLU 299 40.39 95.03 7 A PHE 300 -165.92 114.92 7 A ALA 303 -151.75 -41.02 7 A GLU 304 174.16 58.03 7 A SER 305 69.06 -177.31 8 A SER 266 50.57 -93.27 8 A GLN 267 35.89 54.75 8 A GLU 269 -112.93 -78.23 8 A PHE 270 -147.96 49.98 8 A ARG 272 45.65 71.13 8 A THR 282 19.93 -94.77 8 A GLN 296 -36.43 -36.89 8 A ALA 298 54.55 88.65 8 A GLU 299 -115.80 -86.97 8 A PHE 300 35.14 63.26 8 A GLN 302 -179.51 129.52 8 A ALA 303 78.90 -156.01 8 A SER 305 72.89 166.08 9 A THR 264 -148.53 -42.78 9 A GLN 268 -121.42 -77.80 9 A PHE 270 162.44 -25.47 9 A LEU 275 137.85 -33.48 9 A LEU 278 -34.63 -27.99 9 A SER 279 -35.27 -28.13 9 A SER 280 -149.37 14.77 9 A THR 282 27.07 -85.89 9 A GLU 299 164.71 60.49 9 A GLN 302 -148.33 -73.45 9 A ALA 303 -164.72 -153.56 9 A SER 305 -108.26 -71.04 10 A THR 264 -102.28 51.88 10 A GLN 267 47.23 76.37 10 A GLU 269 -106.64 43.40 10 A ARG 272 42.58 27.12 10 A THR 273 35.60 70.22 10 A LEU 275 -37.01 110.34 10 A THR 282 24.51 -85.67 10 A ALA 298 -137.18 -48.14 10 A GLU 299 -179.23 -70.82 10 A PHE 300 -117.02 -72.16 10 A GLN 302 -43.83 88.96 10 A SER 305 -36.07 151.35 NMR solution structure of the C-terminal ubiquitin-interacting motif of the proteasome subunit S5a 1 N N A ASP 277 A ASP 15 HELX_P A LEU 295 A LEU 33 1 1 19 LIGAND BINDING PROTEIN ALPHA HELIX, HAIRPIN LOOP, LIGAND BINDING PROTEIN PSD4_HUMAN UNP 1 263 P55036 MTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESAD 263 307 1P9C 263 307 P55036 A 1 1 45