1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mueller, T.D.
Feigon, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UK
Embo J.
EMJODG
0897
0261-4189
22
4634
4645
10.1093/emboj/cdg467
12970176
Structural determinants for the binding of ubiquitin-like domains to the proteasome.
2003
10.2210/pdb1p9c/pdb
pdb_00001p9c
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4916.343
26S proteasome non-ATPase regulatory subunit 4
C-terminal ubiquitin-interacting motif
1
man
polymer
26S proteasome regulatory subunit S5A, Rpn10, Multiubiquitin chain binding protein, Antisecretory factor-1, AF, ASF
no
no
MTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESAD
MTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESAD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
PSMD4 OR MCB1
9606
Homo sapiens
562
Escherichia coli
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-10-07
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
High-resolution structure of the ubiquitin-like domain of HHR23A
High-resolution structure of the complex of HHR23A ubiquitin-like domain and the C-terminal ubiquitin-interacting motif of proteasome subunit S5a
RCSB
Y
RCSB
2003-05-10
REL
The structure was determined using standard triple-resonance NMR spectroscopy techniques
structures with the lowest energy
100
10
2D NOESY
3D_13C-separated_NOESY
150mM
6.5
ambient
300
K
The structures are based on a total of 474 distance restraints, 452 are NOE-derived distance restraints, 22 are from hydrogen bonds
simulated annealing
1
lowest energy
2mM S5a peptide, unlabeled
50mM sodium phosphate; 100mM sodium chloride; 5% D2O
2mM S5a peptide U-15N,13C
50mM sodium phosphate; 100mM sodium chloride; 5% D2O
Bruker Karlsruhe
processing
XwinNMR
2.5
Neidig
data analysis
AURELIA
2.8.9
Brunger
structure solution
X-PLOR
3.1
Brunger
refinement
X-PLOR
3.1
500
Bruker
DRX
600
Bruker
DRX
MET
263
n
1
MET
263
A
THR
264
n
2
THR
264
A
ILE
265
n
3
ILE
265
A
SER
266
n
4
SER
266
A
GLN
267
n
5
GLN
267
A
GLN
268
n
6
GLN
268
A
GLU
269
n
7
GLU
269
A
PHE
270
n
8
PHE
270
A
GLY
271
n
9
GLY
271
A
ARG
272
n
10
ARG
272
A
THR
273
n
11
THR
273
A
GLY
274
n
12
GLY
274
A
LEU
275
n
13
LEU
275
A
PRO
276
n
14
PRO
276
A
ASP
277
n
15
ASP
277
A
LEU
278
n
16
LEU
278
A
SER
279
n
17
SER
279
A
SER
280
n
18
SER
280
A
MET
281
n
19
MET
281
A
THR
282
n
20
THR
282
A
GLU
283
n
21
GLU
283
A
GLU
284
n
22
GLU
284
A
GLU
285
n
23
GLU
285
A
GLN
286
n
24
GLN
286
A
ILE
287
n
25
ILE
287
A
ALA
288
n
26
ALA
288
A
TYR
289
n
27
TYR
289
A
ALA
290
n
28
ALA
290
A
MET
291
n
29
MET
291
A
GLN
292
n
30
GLN
292
A
MET
293
n
31
MET
293
A
SER
294
n
32
SER
294
A
LEU
295
n
33
LEU
295
A
GLN
296
n
34
GLN
296
A
GLY
297
n
35
GLY
297
A
ALA
298
n
36
ALA
298
A
GLU
299
n
37
GLU
299
A
PHE
300
n
38
PHE
300
A
GLY
301
n
39
GLY
301
A
GLN
302
n
40
GLN
302
A
ALA
303
n
41
ALA
303
A
GLU
304
n
42
GLU
304
A
SER
305
n
43
SER
305
A
ALA
306
n
44
ALA
306
A
ASP
307
n
45
ASP
307
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ILE
265
174.44
-34.52
1
A
SER
266
79.06
-75.12
1
A
GLN
267
85.60
-46.31
1
A
PHE
270
173.85
-65.24
1
A
PRO
276
-56.21
-152.81
1
A
ASP
277
-106.30
42.77
1
A
THR
282
24.65
-84.62
1
A
ALA
298
-179.18
-53.46
1
A
GLU
304
-161.97
45.20
1
A
SER
305
-152.38
45.56
2
A
THR
264
-117.26
-85.28
2
A
ILE
265
-61.86
-88.58
2
A
SER
266
55.35
159.53
2
A
GLU
269
173.49
63.09
2
A
PHE
270
179.22
-32.80
2
A
PRO
276
-87.34
-86.56
2
A
ASP
277
73.84
-74.66
2
A
LEU
278
84.11
-26.09
2
A
SER
280
-147.99
25.25
2
A
THR
282
22.58
-92.22
2
A
ALA
298
168.19
-80.68
2
A
GLU
299
164.25
94.77
2
A
PHE
300
67.50
63.00
2
A
ALA
306
85.26
-54.50
3
A
ILE
265
-98.85
34.98
3
A
GLU
269
43.04
29.76
3
A
ARG
272
155.92
69.95
3
A
LEU
275
115.32
-42.83
3
A
ASP
277
36.37
46.99
3
A
SER
280
-130.52
-34.26
3
A
THR
282
21.48
-91.55
3
A
LEU
295
35.30
32.56
3
A
GLN
296
-154.12
29.09
3
A
GLU
299
84.85
-61.11
3
A
ALA
306
56.85
-167.42
4
A
THR
264
-98.37
50.12
4
A
GLN
268
36.81
48.95
4
A
GLU
269
-153.72
67.90
4
A
PHE
270
-173.97
-50.21
4
A
ARG
272
154.64
-18.99
4
A
THR
273
91.03
-24.65
4
A
LEU
278
71.77
-18.51
4
A
THR
282
24.69
-84.32
4
A
GLU
299
58.48
85.90
4
A
PHE
300
57.16
109.75
4
A
GLN
302
-105.14
-81.42
4
A
GLU
304
49.73
24.75
4
A
ALA
306
-172.37
-171.30
5
A
THR
264
-106.02
57.88
5
A
ILE
265
177.05
-35.13
5
A
SER
266
48.95
-168.08
5
A
GLN
267
44.81
74.92
5
A
ARG
272
55.38
17.68
5
A
THR
273
35.71
47.23
5
A
PRO
276
-78.76
-166.24
5
A
LEU
278
70.70
-21.64
5
A
THR
282
28.55
-87.21
5
A
GLN
302
59.56
-86.57
5
A
GLU
304
-158.61
-45.29
5
A
SER
305
68.46
-177.23
5
A
ALA
306
62.66
153.07
6
A
THR
264
-104.71
-169.91
6
A
ILE
265
-153.06
87.75
6
A
SER
266
-60.56
-78.72
6
A
GLN
267
40.35
28.68
6
A
GLU
269
55.15
-90.79
6
A
PHE
270
-166.39
44.27
6
A
THR
273
85.48
-52.66
6
A
LEU
278
80.38
-30.07
6
A
SER
280
-143.69
14.74
6
A
THR
282
16.76
-81.78
6
A
GLN
296
-94.18
47.33
6
A
ALA
298
82.08
18.95
6
A
GLU
299
-175.92
43.18
6
A
ALA
306
-61.63
-77.43
7
A
THR
264
-108.16
51.21
7
A
ILE
265
57.63
-86.54
7
A
GLN
267
-130.36
-41.64
7
A
GLN
268
66.82
150.98
7
A
GLU
269
-153.76
29.42
7
A
PHE
270
85.52
-10.89
7
A
ARG
272
34.43
31.01
7
A
THR
273
83.66
-60.04
7
A
LEU
275
65.46
60.90
7
A
ASP
277
29.91
84.65
7
A
SER
279
94.10
52.82
7
A
SER
280
134.35
-10.98
7
A
MET
281
-25.91
-82.54
7
A
THR
282
66.35
-160.11
7
A
LEU
295
-104.54
63.75
7
A
GLU
299
40.39
95.03
7
A
PHE
300
-165.92
114.92
7
A
ALA
303
-151.75
-41.02
7
A
GLU
304
174.16
58.03
7
A
SER
305
69.06
-177.31
8
A
SER
266
50.57
-93.27
8
A
GLN
267
35.89
54.75
8
A
GLU
269
-112.93
-78.23
8
A
PHE
270
-147.96
49.98
8
A
ARG
272
45.65
71.13
8
A
THR
282
19.93
-94.77
8
A
GLN
296
-36.43
-36.89
8
A
ALA
298
54.55
88.65
8
A
GLU
299
-115.80
-86.97
8
A
PHE
300
35.14
63.26
8
A
GLN
302
-179.51
129.52
8
A
ALA
303
78.90
-156.01
8
A
SER
305
72.89
166.08
9
A
THR
264
-148.53
-42.78
9
A
GLN
268
-121.42
-77.80
9
A
PHE
270
162.44
-25.47
9
A
LEU
275
137.85
-33.48
9
A
LEU
278
-34.63
-27.99
9
A
SER
279
-35.27
-28.13
9
A
SER
280
-149.37
14.77
9
A
THR
282
27.07
-85.89
9
A
GLU
299
164.71
60.49
9
A
GLN
302
-148.33
-73.45
9
A
ALA
303
-164.72
-153.56
9
A
SER
305
-108.26
-71.04
10
A
THR
264
-102.28
51.88
10
A
GLN
267
47.23
76.37
10
A
GLU
269
-106.64
43.40
10
A
ARG
272
42.58
27.12
10
A
THR
273
35.60
70.22
10
A
LEU
275
-37.01
110.34
10
A
THR
282
24.51
-85.67
10
A
ALA
298
-137.18
-48.14
10
A
GLU
299
-179.23
-70.82
10
A
PHE
300
-117.02
-72.16
10
A
GLN
302
-43.83
88.96
10
A
SER
305
-36.07
151.35
NMR solution structure of the C-terminal ubiquitin-interacting motif of the proteasome subunit S5a
1
N
N
A
ASP
277
A
ASP
15
HELX_P
A
LEU
295
A
LEU
33
1
1
19
LIGAND BINDING PROTEIN
ALPHA HELIX, HAIRPIN LOOP, LIGAND BINDING PROTEIN
PSD4_HUMAN
UNP
1
263
P55036
MTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEFGQAESAD
263
307
1P9C
263
307
P55036
A
1
1
45