0.014914
0.008611
0.000000
0.000000
0.017221
0.000000
0.000000
0.000000
0.004505
0.00000
0.00000
0.00000
Nummelin, H.
Merckel, M.C.
Skurnik, M.
Goldman, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
67.050
67.050
221.953
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
23
701
711
10.1038/sj.emboj.7600100
14765110
The Yersinia adhesin YadA collagen-binding domain structure is a novel left-handed parallel beta-roll.
2004
10.2210/pdb1p9h/pdb
pdb_00001p9h
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2000-06-19
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.91020
1.0
X11
EMBL/DESY, HAMBURG
0.91020
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
22806.059
Invasin
COLLAGEN-BINDING DOMAIN
1
man
polymer
18.015
water
105
nat
water
Outer membrane adhesin
no
no
MRGSHHHHHHDDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIA
TGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGD
RSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYAD
MRGSHHHHHHDDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIA
TGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGD
RSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYAD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Yersinia
Escherichia
sample
YADA OR YOPA OR INVA OR YOP1
630
Yersinia enterocolitica
562
Escherichia coli
M15(pREP4)
pQE-30
plasmid
pHN-1
1
2.43
48.92
VAPOR DIFFUSION, SITTING DROP
6.5
PEG 8000, sodium acetate, sodium-cacotylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
struct_ref_seq_dif
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
1
0
2004-03-23
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2003-05-12
REL
REL
HOH
water
WAT
221
2
HOH
HOH
242
A
WAT
222
2
HOH
HOH
243
A
WAT
223
2
HOH
HOH
244
A
WAT
224
2
HOH
HOH
245
A
WAT
225
2
HOH
HOH
246
A
WAT
226
2
HOH
HOH
247
A
WAT
227
2
HOH
HOH
248
A
WAT
228
2
HOH
HOH
249
A
WAT
229
2
HOH
HOH
250
A
WAT
230
2
HOH
HOH
251
A
WAT
231
2
HOH
HOH
252
A
WAT
232
2
HOH
HOH
253
A
WAT
233
2
HOH
HOH
254
A
WAT
234
2
HOH
HOH
255
A
WAT
235
2
HOH
HOH
256
A
WAT
236
2
HOH
HOH
257
A
WAT
237
2
HOH
HOH
258
A
WAT
238
2
HOH
HOH
259
A
WAT
239
2
HOH
HOH
260
A
WAT
240
2
HOH
HOH
261
A
WAT
241
2
HOH
HOH
262
A
WAT
242
2
HOH
HOH
263
A
WAT
243
2
HOH
HOH
264
A
WAT
244
2
HOH
HOH
265
A
WAT
245
2
HOH
HOH
266
A
WAT
246
2
HOH
HOH
267
A
WAT
247
2
HOH
HOH
268
A
WAT
248
2
HOH
HOH
269
A
WAT
249
2
HOH
HOH
270
A
WAT
250
2
HOH
HOH
271
A
WAT
251
2
HOH
HOH
272
A
WAT
252
2
HOH
HOH
273
A
WAT
253
2
HOH
HOH
274
A
WAT
254
2
HOH
HOH
275
A
WAT
255
2
HOH
HOH
276
A
WAT
256
2
HOH
HOH
277
A
WAT
257
2
HOH
HOH
278
A
WAT
258
2
HOH
HOH
279
A
WAT
259
2
HOH
HOH
280
A
WAT
260
2
HOH
HOH
281
A
WAT
261
2
HOH
HOH
282
A
WAT
262
2
HOH
HOH
283
A
WAT
263
2
HOH
HOH
284
A
WAT
264
2
HOH
HOH
285
A
WAT
265
2
HOH
HOH
286
A
WAT
266
2
HOH
HOH
287
A
WAT
267
2
HOH
HOH
288
A
WAT
268
2
HOH
HOH
289
A
WAT
269
2
HOH
HOH
290
A
WAT
270
2
HOH
HOH
291
A
WAT
271
2
HOH
HOH
292
A
WAT
272
2
HOH
HOH
293
A
WAT
273
2
HOH
HOH
294
A
WAT
274
2
HOH
HOH
295
A
WAT
275
2
HOH
HOH
296
A
WAT
276
2
HOH
HOH
297
A
WAT
277
2
HOH
HOH
298
A
WAT
278
2
HOH
HOH
299
A
WAT
279
2
HOH
HOH
300
A
WAT
280
2
HOH
HOH
301
A
WAT
281
2
HOH
HOH
302
A
WAT
282
2
HOH
HOH
303
A
WAT
283
2
HOH
HOH
304
A
WAT
284
2
HOH
HOH
305
A
WAT
285
2
HOH
HOH
306
A
WAT
286
2
HOH
HOH
307
A
WAT
287
2
HOH
HOH
308
A
WAT
288
2
HOH
HOH
309
A
WAT
289
2
HOH
HOH
310
A
WAT
290
2
HOH
HOH
311
A
WAT
291
2
HOH
HOH
312
A
WAT
292
2
HOH
HOH
313
A
WAT
293
2
HOH
HOH
314
A
WAT
294
2
HOH
HOH
315
A
WAT
295
2
HOH
HOH
316
A
WAT
296
2
HOH
HOH
317
A
WAT
297
2
HOH
HOH
318
A
WAT
298
2
HOH
HOH
319
A
WAT
299
2
HOH
HOH
320
A
WAT
300
2
HOH
HOH
321
A
WAT
301
2
HOH
HOH
322
A
WAT
302
2
HOH
HOH
323
A
WAT
303
2
HOH
HOH
324
A
WAT
304
2
HOH
HOH
325
A
WAT
305
2
HOH
HOH
326
A
WAT
306
2
HOH
HOH
327
A
WAT
307
2
HOH
HOH
328
A
WAT
308
2
HOH
HOH
329
A
WAT
309
2
HOH
HOH
330
A
WAT
310
2
HOH
HOH
331
A
WAT
311
2
HOH
HOH
332
A
WAT
312
2
HOH
HOH
333
A
WAT
313
2
HOH
HOH
334
A
WAT
314
2
HOH
HOH
335
A
WAT
315
2
HOH
HOH
336
A
WAT
316
2
HOH
HOH
337
A
WAT
317
2
HOH
HOH
338
A
WAT
318
2
HOH
HOH
339
A
WAT
319
2
HOH
HOH
340
A
WAT
320
2
HOH
HOH
341
A
WAT
321
2
HOH
HOH
342
A
WAT
322
2
HOH
HOH
343
A
WAT
323
2
HOH
HOH
344
A
WAT
324
2
HOH
HOH
345
A
WAT
325
2
HOH
HOH
346
A
n
1
16
A
n
2
17
A
n
3
18
A
n
4
19
A
n
5
20
A
n
6
21
A
n
7
22
A
n
8
23
A
n
9
24
A
n
10
25
A
n
11
26
A
n
12
27
A
n
13
28
A
n
14
29
A
n
15
30
A
n
16
31
A
PRO
32
n
17
PRO
32
A
ASN
33
n
18
ASN
33
A
LEU
34
n
19
LEU
34
A
THR
35
n
20
THR
35
A
ALA
36
n
21
ALA
36
A
VAL
37
n
22
VAL
37
A
GLN
38
n
23
GLN
38
A
ILE
39
n
24
ILE
39
A
SER
40
n
25
SER
40
A
PRO
41
n
26
PRO
41
A
ASN
42
n
27
ASN
42
A
ALA
43
n
28
ALA
43
A
ASP
44
n
29
ASP
44
A
PRO
45
n
30
PRO
45
A
ALA
46
n
31
ALA
46
A
LEU
47
n
32
LEU
47
A
GLY
48
n
33
GLY
48
A
LEU
49
n
34
LEU
49
A
GLU
50
n
35
GLU
50
A
TYR
51
n
36
TYR
51
A
n
37
52
A
n
38
53
A
n
39
54
A
n
40
55
A
n
41
56
A
n
42
57
A
n
43
58
A
n
44
59
A
n
45
60
A
n
46
61
A
GLY
62
n
47
GLY
62
A
LEU
63
n
48
LEU
63
A
ASN
64
n
49
ASN
64
A
ALA
65
n
50
ALA
65
A
SER
66
n
51
SER
66
A
ALA
67
n
52
ALA
67
A
LYS
68
n
53
LYS
68
A
GLY
69
n
54
GLY
69
A
ILE
70
n
55
ILE
70
A
HIS
71
n
56
HIS
71
A
SER
72
n
57
SER
72
A
ILE
73
n
58
ILE
73
A
ALA
74
n
59
ALA
74
A
ILE
75
n
60
ILE
75
A
GLY
76
n
61
GLY
76
A
ALA
77
n
62
ALA
77
A
THR
78
n
63
THR
78
A
ALA
79
n
64
ALA
79
A
GLU
80
n
65
GLU
80
A
ALA
81
n
66
ALA
81
A
ALA
82
n
67
ALA
82
A
LYS
83
n
68
LYS
83
A
GLY
84
n
69
GLY
84
A
ALA
85
n
70
ALA
85
A
ALA
86
n
71
ALA
86
A
VAL
87
n
72
VAL
87
A
ALA
88
n
73
ALA
88
A
VAL
89
n
74
VAL
89
A
GLY
90
n
75
GLY
90
A
ALA
91
n
76
ALA
91
A
GLY
92
n
77
GLY
92
A
SER
93
n
78
SER
93
A
ILE
94
n
79
ILE
94
A
ALA
95
n
80
ALA
95
A
THR
96
n
81
THR
96
A
GLY
97
n
82
GLY
97
A
VAL
98
n
83
VAL
98
A
ASN
99
n
84
ASN
99
A
SER
100
n
85
SER
100
A
VAL
101
n
86
VAL
101
A
ALA
102
n
87
ALA
102
A
ILE
103
n
88
ILE
103
A
GLY
104
n
89
GLY
104
A
PRO
105
n
90
PRO
105
A
LEU
106
n
91
LEU
106
A
SER
107
n
92
SER
107
A
LYS
108
n
93
LYS
108
A
ALA
109
n
94
ALA
109
A
LEU
110
n
95
LEU
110
A
GLY
111
n
96
GLY
111
A
ASP
112
n
97
ASP
112
A
SER
113
n
98
SER
113
A
ALA
114
n
99
ALA
114
A
VAL
115
n
100
VAL
115
A
THR
116
n
101
THR
116
A
TYR
117
n
102
TYR
117
A
GLY
118
n
103
GLY
118
A
ALA
119
n
104
ALA
119
A
ALA
120
n
105
ALA
120
A
SER
121
n
106
SER
121
A
THR
122
n
107
THR
122
A
ALA
123
n
108
ALA
123
A
GLN
124
n
109
GLN
124
A
LYS
125
n
110
LYS
125
A
ASP
126
n
111
ASP
126
A
GLY
127
n
112
GLY
127
A
VAL
128
n
113
VAL
128
A
ALA
129
n
114
ALA
129
A
ILE
130
n
115
ILE
130
A
GLY
131
n
116
GLY
131
A
ALA
132
n
117
ALA
132
A
ARG
133
n
118
ARG
133
A
ALA
134
n
119
ALA
134
A
SER
135
n
120
SER
135
A
THR
136
n
121
THR
136
A
SER
137
n
122
SER
137
A
ASP
138
n
123
ASP
138
A
THR
139
n
124
THR
139
A
GLY
140
n
125
GLY
140
A
VAL
141
n
126
VAL
141
A
ALA
142
n
127
ALA
142
A
VAL
143
n
128
VAL
143
A
GLY
144
n
129
GLY
144
A
PHE
145
n
130
PHE
145
A
ASN
146
n
131
ASN
146
A
SER
147
n
132
SER
147
A
LYS
148
n
133
LYS
148
A
ALA
149
n
134
ALA
149
A
ASP
150
n
135
ASP
150
A
ALA
151
n
136
ALA
151
A
LYS
152
n
137
LYS
152
A
ASN
153
n
138
ASN
153
A
SER
154
n
139
SER
154
A
VAL
155
n
140
VAL
155
A
ALA
156
n
141
ALA
156
A
ILE
157
n
142
ILE
157
A
GLY
158
n
143
GLY
158
A
HIS
159
n
144
HIS
159
A
SER
160
n
145
SER
160
A
SER
161
n
146
SER
161
A
HIS
162
n
147
HIS
162
A
VAL
163
n
148
VAL
163
A
ALA
164
n
149
ALA
164
A
ALA
165
n
150
ALA
165
A
ASN
166
n
151
ASN
166
A
HIS
167
n
152
HIS
167
A
GLY
168
n
153
GLY
168
A
TYR
169
n
154
TYR
169
A
SER
170
n
155
SER
170
A
ILE
171
n
156
ILE
171
A
ALA
172
n
157
ALA
172
A
ILE
173
n
158
ILE
173
A
GLY
174
n
159
GLY
174
A
ASP
175
n
160
ASP
175
A
ARG
176
n
161
ARG
176
A
SER
177
n
162
SER
177
A
ALA
178
n
163
LYS
178
A
THR
179
n
164
THR
179
A
ASP
180
n
165
ASP
180
A
ARG
181
n
166
ARG
181
A
GLU
182
n
167
GLU
182
A
ASN
183
n
168
ASN
183
A
SER
184
n
169
SER
184
A
VAL
185
n
170
VAL
185
A
SER
186
n
171
SER
186
A
ILE
187
n
172
ILE
187
A
GLY
188
n
173
GLY
188
A
HIS
189
n
174
HIS
189
A
GLU
190
n
175
GLU
190
A
SER
191
n
176
SER
191
A
LEU
192
n
177
LEU
192
A
ASN
193
n
178
ASN
193
A
ARG
194
n
179
ARG
194
A
GLN
195
n
180
GLN
195
A
LEU
196
n
181
LEU
196
A
THR
197
n
182
THR
197
A
HIS
198
n
183
HIS
198
A
LEU
199
n
184
LEU
199
A
ALA
200
n
185
ALA
200
A
ALA
201
n
186
ALA
201
A
GLY
202
n
187
GLY
202
A
THR
203
n
188
THR
203
A
LYS
204
n
189
LYS
204
A
ASP
205
n
190
ASP
205
A
THR
206
n
191
THR
206
A
ASP
207
n
192
ASP
207
A
ALA
208
n
193
ALA
208
A
VAL
209
n
194
VAL
209
A
ASN
210
n
195
ASN
210
A
VAL
211
n
196
VAL
211
A
ALA
212
n
197
ALA
212
A
GLN
213
n
198
GLN
213
A
LEU
214
n
199
LEU
214
A
LYS
215
n
200
LYS
215
A
ALA
216
n
201
LYS
216
A
GLU
217
n
202
GLU
217
A
ILE
218
n
203
ILE
218
A
ALA
219
n
204
GLU
219
A
LYS
220
n
205
LYS
220
A
n
206
221
A
n
207
222
A
n
208
223
A
n
209
224
A
n
210
225
A
n
211
226
A
n
212
227
A
n
213
228
A
n
214
229
A
n
215
230
A
n
216
231
A
n
217
232
A
n
218
233
A
n
219
234
A
n
220
235
A
n
221
236
A
n
222
237
A
n
223
238
A
n
224
239
A
n
225
240
A
n
226
241
A
author_and_software_defined_assembly
PISA,PQS
3
trimeric
15080
-95
16840
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_565
-y,x-y+1,z
crystal symmetry operation
-33.5250000000
58.0670033237
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_455
-x+y-1,-x,z
crystal symmetry operation
-67.0500000000
0.0000000000
0.0000000000
A
N
ILE
39
A
N
ILE
24
A
O
ALA
74
A
O
ALA
59
A
N
ILE
73
A
N
ILE
58
A
O
ALA
88
A
O
ALA
73
A
N
VAL
87
A
N
VAL
72
A
O
ALA
102
A
O
ALA
87
A
N
VAL
101
A
N
VAL
86
A
O
THR
116
A
O
THR
101
A
N
TYR
117
A
N
TYR
102
A
O
ALA
129
A
O
ALA
114
A
N
ILE
130
A
N
ILE
115
A
O
ALA
142
A
O
ALA
127
A
N
VAL
141
A
N
VAL
126
A
O
ALA
156
A
O
ALA
141
A
N
ILE
157
A
N
ILE
142
A
O
ALA
172
A
O
ALA
157
A
N
ILE
171
A
N
ILE
156
A
O
SER
186
A
O
SER
171
A
N
SER
66
A
N
SER
51
A
O
ALA
81
A
O
ALA
66
A
N
GLU
80
A
N
GLU
65
A
O
ALA
95
A
O
ALA
80
A
N
ILE
94
A
N
ILE
79
A
O
ALA
109
A
O
ALA
94
A
N
LYS
108
A
N
LYS
93
A
O
ALA
123
A
O
ALA
108
A
N
THR
122
A
N
THR
107
A
O
THR
136
A
O
THR
121
A
N
SER
135
A
N
SER
120
A
O
ALA
149
A
O
ALA
134
A
N
LYS
148
A
N
LYS
133
A
O
VAL
163
A
O
VAL
148
1
A
CG
LYS
178
A
CG
LYS
163
1
Y
1
A
CD
LYS
178
A
CD
LYS
163
1
Y
1
A
CE
LYS
178
A
CE
LYS
163
1
Y
1
A
NZ
LYS
178
A
NZ
LYS
163
1
Y
1
A
CG
LYS
216
A
CG
LYS
201
1
Y
1
A
CD
LYS
216
A
CD
LYS
201
1
Y
1
A
CE
LYS
216
A
CE
LYS
201
1
Y
1
A
NZ
LYS
216
A
NZ
LYS
201
1
Y
1
A
CG
GLU
219
A
CG
GLU
204
1
Y
1
A
CD
GLU
219
A
CD
GLU
204
1
Y
1
A
OE1
GLU
219
A
OE1
GLU
204
1
Y
1
A
OE2
GLU
219
A
OE2
GLU
204
1
Y
1
A
MET
16
A
MET
1
1
Y
1
A
ARG
17
A
ARG
2
1
Y
1
A
GLY
18
A
GLY
3
1
Y
1
A
SER
19
A
SER
4
1
Y
1
A
HIS
20
A
HIS
5
1
Y
1
A
HIS
21
A
HIS
6
1
Y
1
A
HIS
22
A
HIS
7
1
Y
1
A
HIS
23
A
HIS
8
1
Y
1
A
HIS
24
A
HIS
9
1
Y
1
A
HIS
25
A
HIS
10
1
Y
1
A
ASP
26
A
ASP
11
1
Y
1
A
ASP
27
A
ASP
12
1
Y
1
A
TYR
28
A
TYR
13
1
Y
1
A
ASP
29
A
ASP
14
1
Y
1
A
GLY
30
A
GLY
15
1
Y
1
A
ILE
31
A
ILE
16
1
Y
1
A
PRO
52
A
PRO
37
1
Y
1
A
VAL
53
A
VAL
38
1
Y
1
A
ARG
54
A
ARG
39
1
Y
1
A
PRO
55
A
PRO
40
1
Y
1
A
PRO
56
A
PRO
41
1
Y
1
A
VAL
57
A
VAL
42
1
Y
1
A
PRO
58
A
PRO
43
1
Y
1
A
GLY
59
A
GLY
44
1
Y
1
A
ALA
60
A
ALA
45
1
Y
1
A
GLY
61
A
GLY
46
1
Y
1
A
THR
221
A
THR
206
1
Y
1
A
GLN
222
A
GLN
207
1
Y
1
A
GLU
223
A
GLU
208
1
Y
1
A
ASN
224
A
ASN
209
1
Y
1
A
THR
225
A
THR
210
1
Y
1
A
ASN
226
A
ASN
211
1
Y
1
A
LYS
227
A
LYS
212
1
Y
1
A
ARG
228
A
ARG
213
1
Y
1
A
SER
229
A
SER
214
1
Y
1
A
ALA
230
A
ALA
215
1
Y
1
A
GLU
231
A
GLU
216
1
Y
1
A
LEU
232
A
LEU
217
1
Y
1
A
LEU
233
A
LEU
218
1
Y
1
A
ALA
234
A
ALA
219
1
Y
1
A
ASN
235
A
ASN
220
1
Y
1
A
ALA
236
A
ALA
221
1
Y
1
A
ASN
237
A
ASN
222
1
Y
1
A
ALA
238
A
ALA
223
1
Y
1
A
TYR
239
A
TYR
224
1
Y
1
A
ALA
240
A
ALA
225
1
Y
1
A
ASP
241
A
ASP
226
1
Y
1
A
THR
78
A
54.97
15.33
1
A
ALA
85
56.80
9.64
1
A
ASN
99
59.59
17.13
1
A
SER
113
62.38
-0.10
1
A
ASP
126
57.26
17.97
1
A
THR
139
49.53
24.94
1
A
ALA
149
-103.46
76.71
1
A
HIS
167
-101.82
71.70
1
A
TYR
169
49.70
28.97
1
A
ARG
176
58.41
11.72
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER.PARAM
WATER.TOP
17.0
0.31
0.62
0.00
0.31
0.00
-0.63
0.2038
0.004
0.1956
1.55
19.87
2694
28429
27177
9.9
95.9
RANDOM
263358.66
263358.66
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MAD
Engh & Huber
FLAT MODEL
124.626
0.704203
0.18
0.16
5.00
0.12
0.09
1.55
19.87
105
1333
0
0
1228
0.004
1.4
26.9
0.66
0.275
0.013
0.233
1.65
417
3665
6
10.2
87.9
18.6
1.55
20.0
1P9H
28431
28240
-3.0
0.058
1
24.0
99.4
0.429
1.55
1.61
4.5
2763
1
99.4
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
SOLVE
CRYSTAL STRUCTURE OF THE COLLAGEN-BINDING DOMAIN OF YERSINIA ADHESIN YadA
1
N
N
2
N
N
A
ASN
210
A
ASN
195
HELX_P
A
LYS
220
A
LYS
205
1
1
11
CELL ADHESION
collagen-binding, left-handed beta-roll, CELL ADHESION
YADA1_YEREN
UNP
1
26
P31489
DDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGP
LSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSV
SIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYAD
26
241
1P9H
26
241
P31489
A
1
11
226
1
expression tag
MET
16
1P9H
A
P31489
UNP
1
1
expression tag
ARG
17
1P9H
A
P31489
UNP
2
1
expression tag
GLY
18
1P9H
A
P31489
UNP
3
1
expression tag
SER
19
1P9H
A
P31489
UNP
4
1
expression tag
HIS
20
1P9H
A
P31489
UNP
5
1
expression tag
HIS
21
1P9H
A
P31489
UNP
6
1
expression tag
HIS
22
1P9H
A
P31489
UNP
7
1
expression tag
HIS
23
1P9H
A
P31489
UNP
8
1
expression tag
HIS
24
1P9H
A
P31489
UNP
9
1
expression tag
HIS
25
1P9H
A
P31489
UNP
10
10
8
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
VAL
37
A
VAL
22
A
ILE
39
A
ILE
24
A
ILE
73
A
ILE
58
A
ILE
75
A
ILE
60
A
VAL
87
A
VAL
72
A
VAL
89
A
VAL
74
A
VAL
101
A
VAL
86
A
ILE
103
A
ILE
88
A
VAL
115
A
VAL
100
A
TYR
117
A
TYR
102
A
VAL
128
A
VAL
113
A
ILE
130
A
ILE
115
A
VAL
141
A
VAL
126
A
VAL
143
A
VAL
128
A
VAL
155
A
VAL
140
A
ILE
157
A
ILE
142
A
ILE
171
A
ILE
156
A
ILE
173
A
ILE
158
A
VAL
185
A
VAL
170
A
SER
186
A
SER
171
A
SER
66
A
SER
51
A
ALA
67
A
ALA
52
A
GLU
80
A
GLU
65
A
ALA
81
A
ALA
66
A
ILE
94
A
ILE
79
A
ALA
95
A
ALA
80
A
LYS
108
A
LYS
93
A
ALA
109
A
ALA
94
A
THR
122
A
THR
107
A
ALA
123
A
ALA
108
A
SER
135
A
SER
120
A
THR
136
A
THR
121
A
LYS
148
A
LYS
133
A
ALA
149
A
ALA
134
A
HIS
162
A
HIS
147
A
VAL
163
A
VAL
148
155
H 3 2