1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Huang, R.H.
Xiang, Y.
Tu, G.Z.
Zhang, Y.
Wang, D.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
43
6005
6012
10.1021/bi036263y
15147184
Solution Structure of Eucommia Antifungal Peptide: A Novel Structural Model Distinct with a Five-Disulfide Motif.
2004
NE
FEBS Lett.
FEBLAL
0165
0014-5793
521
87
90
10.1016/S0014-5793(02)02829-6
Two novel antifungal peptides distinct with a five-disulfide motif fron the bark of Eucommia ulmoides Oliver
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
EAFP2
4172.807
Eucommia Antifungal peptide 2
1
nat
polymer
no
yes
(PCA)TCASRCPRPCNAGLCCSIYGYCGSGAAYCGAGNCRCQCRG
QTCASRCPRPCNAGLCCSIYGYCGSGAAYCGAGNCRCQCRG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Eucommia
sample
4392
Eucommia ulmoides
Bark
entity_poly
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_mod_residue
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Polymer sequence
1
0
2004-05-25
1
1
2008-04-29
1
2
2011-07-13
2
0
2019-12-25
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_nmr_software.name
_pdbx_struct_mod_residue.parent_comp_id
_struct_conn.pdbx_leaving_atom_flag
The chemical shifts of the hydrogens
Helix determination method: Author determined
Sheet determination method: Author determined
RCSB
Y
RCSB
2003-05-13
REL
REL
This structure was determined using standard 2D homonuclear techniques
structures with the least restraint violations,structures with the lowest energy
100
21
DQF-COSY
2D TOCSY
2D NOESY
2D TOCSY
2D NOESY
DQF-COSY
2D NOESY
2D TOCSY
20 mM Phospate Buffer
5.6
ambient
300
K
20 mM Phospate Buffer
5.6
ambient
300
K
20 mM Phospate Buffer
5.6
ambient
290
K
the structures are based on a total of 630 restraints, 594 are NOE-derived
distance constraints, 16 dihedral angle restraints,20 distance restraints
from hydrogen bonds.
torsion angle dynamics,
simulated annealing
1
fewest violations,lowest energy
6mM antifungal peptide(EAFP2); 20 mM phosphate buffer,0.01 mM EDTA
90% H2O/10% D2O
6mM antifungal peptide(EAFP2); 20 mM phosphate buffer, 0.01 mMEDTA
100% D2O
Bruker Corp.
collection
XwinNMR
3.1
Goddard, T.D. and Kneller, D.G.
data analysis
Sparky
3.105
Brunger, A.T. etc.
structure solution
CNS
1.1
Brunger, A.T. etc.
refinement
CNS
1.1
500
Bruker
DMX
PCA
1
n
1
PCA
1
A
THR
2
n
2
THR
2
A
CYS
3
n
3
CYS
3
A
ALA
4
n
4
ALA
4
A
SER
5
n
5
SER
5
A
ARG
6
n
6
ARG
6
A
CYS
7
n
7
CYS
7
A
PRO
8
n
8
PRO
8
A
ARG
9
n
9
ARG
9
A
PRO
10
n
10
PRO
10
A
CYS
11
n
11
CYS
11
A
ASN
12
n
12
ASN
12
A
ALA
13
n
13
ALA
13
A
GLY
14
n
14
GLY
14
A
LEU
15
n
15
LEU
15
A
CYS
16
n
16
CYS
16
A
CYS
17
n
17
CYS
17
A
SER
18
n
18
SER
18
A
ILE
19
n
19
ILE
19
A
TYR
20
n
20
TYR
20
A
GLY
21
n
21
GLY
21
A
TYR
22
n
22
TYR
22
A
CYS
23
n
23
CYS
23
A
GLY
24
n
24
GLY
24
A
SER
25
n
25
SER
25
A
GLY
26
n
26
GLY
26
A
ALA
27
n
27
ALA
27
A
ALA
28
n
28
ALA
28
A
TYR
29
n
29
TYR
29
A
CYS
30
n
30
CYS
30
A
GLY
31
n
31
GLY
31
A
ALA
32
n
32
ALA
32
A
GLY
33
n
33
GLY
33
A
ASN
34
n
34
ASN
34
A
CYS
35
n
35
CYS
35
A
ARG
36
n
36
ARG
36
A
CYS
37
n
37
CYS
37
A
GLN
38
n
38
GLN
38
A
CYS
39
n
39
CYS
39
A
ARG
40
n
40
ARG
40
A
GLY
41
n
41
GLY
41
A
author_defined_assembly
1
monomeric
A
PCA
1
PYROGLUTAMIC ACID
A
PCA
1
GLN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
18
A
N
SER
18
A
O
TYR
22
A
O
TYR
22
A
N
CYS
17
A
N
CYS
17
A
O
CYS
37
A
O
CYS
37
1
A
THR
2
-148.51
40.21
1
A
ARG
9
-115.99
70.00
2
A
THR
2
-148.44
46.07
3
A
THR
2
-152.77
53.47
3
A
ASN
12
-63.93
-173.59
3
A
ASN
34
-148.78
28.32
4
A
THR
2
-151.58
43.57
4
A
ASN
12
-63.45
-170.64
4
A
CYS
30
-150.65
30.52
4
A
ASN
34
-141.73
33.83
6
A
THR
2
-153.25
35.88
6
A
ASN
12
-65.39
-170.42
6
A
ASN
34
-160.06
39.71
6
A
CYS
39
-131.20
-44.98
7
A
ASN
12
-59.48
-174.60
8
A
THR
2
-148.79
34.31
8
A
ASN
34
-153.98
43.96
9
A
ASN
34
-152.79
48.45
9
A
ARG
40
-147.71
30.70
10
A
THR
2
-141.39
45.28
10
A
CYS
30
-160.08
30.20
11
A
THR
2
-158.80
45.11
11
A
ALA
32
-119.98
76.16
12
A
THR
2
-148.63
44.11
12
A
ASN
12
-61.74
-171.44
12
A
ASN
34
-143.28
23.48
12
A
ARG
40
-143.69
30.93
15
A
ASN
12
-67.83
-171.22
17
A
ASN
12
-69.18
-169.69
17
A
CYS
30
-152.65
35.89
19
A
THR
2
-144.32
39.90
19
A
ASN
12
-73.74
-169.84
20
A
PRO
8
-97.12
44.21
20
A
ARG
9
-143.42
51.99
20
A
ASN
12
-59.63
-171.09
20
A
ASN
34
-160.10
32.94
20
A
ARG
40
-162.16
30.50
21
A
THR
2
-140.44
48.40
21
A
ASN
12
-63.90
-177.31
21
A
ASN
34
-159.91
30.58
Antifungal peptide from the Eucommia ulmoides Oliver (EAFP2)
The Solution Structure of Antifungal Peptide Distinct With a Five-disulfide Motif from Eucommia ulmoides Oliver
1
N
N
A
CYS
3
A
CYS
3
HELX_P
A
ARG
6
A
ARG
6
5
1
4
A
GLY
26
A
GLY
26
HELX_P
A
CYS
30
A
CYS
30
1
2
5
disulf
2.030
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
17
A
SG
CYS
17
1_555
disulf
2.030
A
CYS
7
A
SG
CYS
7
1_555
A
CYS
37
A
SG
CYS
37
1_555
disulf
2.030
A
CYS
11
A
SG
CYS
11
1_555
A
CYS
23
A
SG
CYS
23
1_555
disulf
2.030
A
CYS
16
A
SG
CYS
16
1_555
A
CYS
30
A
SG
CYS
30
1_555
disulf
2.030
A
CYS
35
A
SG
CYS
35
1_555
A
CYS
39
A
SG
CYS
39
1_555
covale
1.329
both
A
PCA
1
A
C
PCA
1
1_555
A
THR
2
A
N
THR
2
1_555
ANTIFUNGAL PROTEIN
Antifungal peptide, Chitin-binding peptide, Disulfide stabilized motif, ANTIFUNGAL PROTEIN
A
CYS
7
A
CYS
7
1
A
PRO
8
A
PRO
8
0.03
A
CYS
7
A
CYS
7
2
A
PRO
8
A
PRO
8
0.16
A
CYS
7
A
CYS
7
3
A
PRO
8
A
PRO
8
0.22
A
CYS
7
A
CYS
7
4
A
PRO
8
A
PRO
8
0.14
A
CYS
7
A
CYS
7
5
A
PRO
8
A
PRO
8
0.28
A
CYS
7
A
CYS
7
6
A
PRO
8
A
PRO
8
0.08
A
CYS
7
A
CYS
7
7
A
PRO
8
A
PRO
8
0.16
A
CYS
7
A
CYS
7
8
A
PRO
8
A
PRO
8
0.25
A
CYS
7
A
CYS
7
9
A
PRO
8
A
PRO
8
0.11
A
CYS
7
A
CYS
7
10
A
PRO
8
A
PRO
8
0.45
A
CYS
7
A
CYS
7
11
A
PRO
8
A
PRO
8
0.13
A
CYS
7
A
CYS
7
12
A
PRO
8
A
PRO
8
0.23
A
CYS
7
A
CYS
7
13
A
PRO
8
A
PRO
8
0.32
A
CYS
7
A
CYS
7
14
A
PRO
8
A
PRO
8
0.40
A
CYS
7
A
CYS
7
15
A
PRO
8
A
PRO
8
0.41
A
CYS
7
A
CYS
7
16
A
PRO
8
A
PRO
8
0.28
A
CYS
7
A
CYS
7
17
A
PRO
8
A
PRO
8
0.51
A
CYS
7
A
CYS
7
18
A
PRO
8
A
PRO
8
0.44
A
CYS
7
A
CYS
7
19
A
PRO
8
A
PRO
8
0.15
A
CYS
7
A
CYS
7
20
A
PRO
8
A
PRO
8
0.73
A
CYS
7
A
CYS
7
21
A
PRO
8
A
PRO
8
0.43
EAP2_EUCUL
UNP
1
1
P83597
QTCASRCPRPCNAGLCCSIYGYCGSGAAYCGAGNCRCQCRG
1
41
1P9Z
1
41
P83597
A
1
1
41
3
anti-parallel
anti-parallel
A
TYR
22
A
TYR
22
A
GLY
24
A
GLY
24
A
CYS
16
A
CYS
16
A
SER
18
A
SER
18
A
ARG
36
A
ARG
36
A
CYS
37
A
CYS
37
1
P 1