1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
GLU 135 - GLN 136 MODEL 4 OMEGA =147.07 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
PHE 137 - ILE 138 MODEL 6 OMEGA =144.43 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
PHE 137 - ILE 138 MODEL 8 OMEGA =144.96 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
PHE 137 - ILE 138 MODEL 11 OMEGA =144.49 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
Mcinnes, C.
Sonnichsen, F.D.
Kay, C.M.
Hodges, R.S.
Sykes, B.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H O -1
17.007
HYDROXIDE ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
32
13432
13440
10.1021/bi00212a008
8257679
NMR solution structure and flexibility of a peptide antigen representing the receptor binding domain of Pseudomonas aeruginosa.
1993
To be Published
0353
Conformational Differences between the Cis and Trans Proline Isomers of a Peptide Antigen Representing the Receptor Binding Domain of Pseudomonas Aeruginosa
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1943.182
FIMBRIAL PROTEIN PRECURSOR
1
man
polymer
17.007
HYDROXIDE ION
1
syn
non-polymer
no
yes
(ACE)KCTSDQDEQFIPKGCSK
XKCTSDQDEQFIPKGCSK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pseudomonas
sample
287
Pseudomonas aeruginosa
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conf
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
1
0
1994-01-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1993-08-25
REL
OH
HYDROXIDE ION
12
OH
145
2
OH
OH
145
A
ACE
127
n
1
ACE
127
A
LYS
128
n
2
LYS
128
A
CYS
129
n
3
CYS
129
A
THR
130
n
4
THR
130
A
SER
131
n
5
SER
131
A
ASP
132
n
6
ASP
132
A
GLN
133
n
7
GLN
133
A
ASP
134
n
8
ASP
134
A
GLU
135
n
9
GLU
135
A
GLN
136
n
10
GLN
136
A
PHE
137
n
11
PHE
137
A
ILE
138
n
12
ILE
138
A
PRO
139
n
13
PRO
139
A
LYS
140
n
14
LYS
140
A
GLY
141
n
15
GLY
141
A
CYS
142
n
16
CYS
142
A
SER
143
n
17
SER
143
A
LYS
144
n
18
LYS
144
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
4
A
A
GLU
GLN
135
136
147.07
6
A
A
PHE
ILE
137
138
144.43
8
A
A
PHE
ILE
137
138
144.96
11
A
A
PHE
ILE
137
138
144.49
1
-6.01
0.90
118.30
112.29
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
1
5.41
0.90
118.30
123.71
A
A
A
CB
CG
OD1
ASP
ASP
ASP
134
134
134
N
1
-6.20
0.90
118.30
112.10
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
2
-5.90
0.90
118.30
112.40
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
2
-6.21
0.90
118.30
112.09
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
3
-6.05
0.90
118.30
112.25
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
3
-5.99
0.90
118.30
112.31
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
4
-6.00
0.90
118.30
112.30
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
4
-5.96
0.90
118.30
112.34
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
5
-5.99
0.90
118.30
112.31
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
5
-6.16
0.90
118.30
112.14
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
6
-6.07
0.90
118.30
112.23
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
6
-6.10
0.90
118.30
112.20
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
7
-5.98
0.90
118.30
112.32
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
7
-5.91
0.90
118.30
112.39
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
8
-5.86
0.90
118.30
112.44
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
8
-6.01
0.90
118.30
112.29
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
9
-6.07
0.90
118.30
112.23
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
9
-6.00
0.90
118.30
112.30
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
10
-5.89
0.90
118.30
112.41
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
10
-6.14
0.90
118.30
112.16
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
11
-6.14
0.90
118.30
112.16
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
11
-6.17
0.90
118.30
112.13
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
12
-6.03
0.90
118.30
112.27
A
A
A
CB
CG
OD2
ASP
ASP
ASP
132
132
132
N
12
-5.98
0.90
118.30
112.32
A
A
A
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
1
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
2
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
3
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
4
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
5
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
6
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
7
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
8
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
9
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
10
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
11
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
12
A
A
CD
OE2
GLU
GLU
135
135
0.120
0.011
1.252
1.372
N
1
A
CYS
129
-74.53
-86.21
1
A
SER
131
-167.50
-73.86
1
A
GLN
133
-90.85
49.16
1
A
ASP
134
65.13
152.79
1
A
CYS
142
-64.68
-75.35
2
A
CYS
129
-88.82
-85.80
2
A
ASP
132
-115.25
-111.68
3
A
ASP
132
-97.96
-103.53
3
A
GLN
133
-116.88
79.01
4
A
CYS
129
-116.78
-105.72
4
A
THR
130
-166.01
117.45
4
A
ASP
132
-144.07
-106.51
4
A
GLN
133
-118.00
74.61
4
A
ASP
134
70.67
-64.97
5
A
CYS
129
-73.42
-81.67
5
A
ASP
132
76.12
-20.92
5
A
ASP
134
69.16
132.86
6
A
CYS
129
-100.86
-71.44
6
A
SER
143
60.67
82.33
7
A
CYS
129
-115.47
-78.81
7
A
ASP
132
-138.20
-99.32
7
A
GLN
133
-112.63
51.81
7
A
ASP
134
-160.65
62.52
7
A
CYS
142
-69.06
-87.06
8
A
CYS
129
-115.05
-108.14
8
A
SER
131
56.26
85.34
9
A
CYS
129
-92.88
-92.92
9
A
SER
131
-116.83
-101.59
9
A
ASP
132
-157.25
-25.36
9
A
GLN
133
-105.53
69.18
9
A
ASP
134
65.25
-81.98
9
A
PRO
139
-63.94
-176.26
9
A
SER
143
70.14
96.87
10
A
ASP
132
-103.67
-97.61
10
A
GLN
133
-115.03
77.36
10
A
ASP
134
-115.46
69.03
11
A
CYS
129
-102.02
-69.95
12
A
CYS
129
-114.69
-74.57
12
A
ASP
132
-117.22
-102.11
12
A
GLN
133
-116.30
78.25
PILIN PEPTIDE FRAGMENT (PAK) (RESIDUES 128 - 144) (NMR, 12 STRUCTURES)
NMR SOLUTION STRUCTURE AND FLEXIBILITY OF A PEPTIDE ANTIGEN REPRESENTING THE RECEPTOR BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA
1
Y
N
2
N
N
disulf
1.995
A
CYS
129
A
SG
CYS
3
1_555
A
CYS
142
A
SG
CYS
16
1_555
covale
1.342
A
ACE
127
A
C
ACE
1
1_555
A
LYS
128
A
N
LYS
2
1_555
covale
1.375
A
LYS
144
A
C
LYS
18
1_555
A
OH
145
B
O
OH
1_555
FIMBRIAL PROTEIN
FIMBRIAL PROTEIN
FMPA_PSEAE
UNP
1
1
P02973
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLG
VAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCTSDQDEQFIPKGCSK
134
150
1PAJ
128
144
P02973
A
1
2
18
BINDING SITE FOR RESIDUE OH A 145
Software
2
A
SER
143
A
SER
17
2
1_555
A
LYS
144
A
LYS
18
2
1_555
1
P 1