1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Vardar, D. North, C.L. Sanchez-Irizarry, C. Aster, J.C. Blacklow, S.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 42 7061 7067 10.1021/bi034156y 12795601 Nuclear Magnetic Resonance Structure of a Prototype Lin12-Notch Repeat Module from Human Notch1 2003 10.2210/pdb1pb5/pdb pdb_00001pb5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 3717.964 Neurogenic locus notch homolog protein 1 First LNR module 1 man polymer 40.078 CALCIUM ION 1 syn non-polymer Notch 1, hN1, translocation-associated notch protein TAN-1 no no EEACELPECQEDAGNKVCSLQCNNHACGWDGGDCS EEACELPECQEDAGNKVCSLQCNNHACGWDGGDCS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli BL21DE3plysS plasmid pMM database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-06-17 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-05-14 REL REL CA CALCIUM ION The structure was determined using triple-resonance NMR spectroscopy all calculated structures submitted,structures with the lowest energy 50 16 HNCA, HNCOCA, 13C HSQC 3D_15N-separated TOCSY, 2D TOCSY, 15N-HSQC, 15N-HMQC-J 3D_15N-separated TOCSY, 2D TOCSY, 15N-HSQC 10mM Ca2+ 6.5 ambient 298 K 10mM Ca2+, 50mM PIPES 7.0 ambient 283 K distance geometry, torsion angle dynamics, simulated annealing 1 minimized average structure 1mM LNRA U-15N, 10mM Ca2+, 0.5mM DSS pH 6.5 90% H2O/10% D2O 1mM LNRA U-15N,13C, 10mM Ca2+, 0.5mM DSS pH 6.5 90% H2O/10% D2O 1.5mM LNRA U-15N,13C, 10 mM Ca2+, 0.5mM DSS, 50 mM deuterated PIPES pH 7.0 90% H2O/10% D2O collection XwinNMR Delaglio, F. processing NMRPipe Johnson, B. data analysis NMRView 5.0.4 Brunger structure solution CNS 1.1 Brunger refinement CNS 1.1 600 Bruker DMX 500 Bruker DMX 400 Varian UNITY CA 501 2 CA CA 501 A GLU 1 n 1 GLU 1 A GLU 2 n 2 GLU 2 A ALA 3 n 3 ALA 3 A CYS 4 n 4 CYS 4 A GLU 5 n 5 GLU 5 A LEU 6 n 6 LEU 6 A PRO 7 n 7 PRO 7 A GLU 8 n 8 GLU 8 A CYS 9 n 9 CYS 9 A GLN 10 n 10 GLN 10 A GLU 11 n 11 GLU 11 A ASP 12 n 12 ASP 12 A ALA 13 n 13 ALA 13 A GLY 14 n 14 GLY 14 A ASN 15 n 15 ASN 15 A LYS 16 n 16 LYS 16 A VAL 17 n 17 VAL 17 A CYS 18 n 18 CYS 18 A SER 19 n 19 SER 19 A LEU 20 n 20 LEU 20 A GLN 21 n 21 GLN 21 A CYS 22 n 22 CYS 22 A ASN 23 n 23 ASN 23 A ASN 24 n 24 ASN 24 A HIS 25 n 25 HIS 25 A ALA 26 n 26 ALA 26 A CYS 27 n 27 CYS 27 A GLY 28 n 28 GLY 28 A TRP 29 n 29 TRP 29 A ASP 30 n 30 ASP 30 A GLY 31 n 31 GLY 31 A GLY 32 n 32 GLY 32 A ASP 33 n 33 ASP 33 A CYS 34 n 34 CYS 34 A SER 35 n 35 SER 35 A author_defined_assembly 1 monomeric A ASP 12 A O ASP 12 1_555 A CA 501 B CA CA 1_555 A ASN 15 A OD1 ASN 15 1_555 70.8 A ASP 12 A O ASP 12 1_555 A CA 501 B CA CA 1_555 A CYS 18 A N CYS 18 1_555 146.1 A ASN 15 A OD1 ASN 15 1_555 A CA 501 B CA CA 1_555 A CYS 18 A N CYS 18 1_555 104.0 A ASP 12 A O ASP 12 1_555 A CA 501 B CA CA 1_555 A ASP 30 A OD1 ASP 30 1_555 62.9 A ASN 15 A OD1 ASN 15 1_555 A CA 501 B CA CA 1_555 A ASP 30 A OD1 ASP 30 1_555 129.3 A CYS 18 A N CYS 18 1_555 A CA 501 B CA CA 1_555 A ASP 30 A OD1 ASP 30 1_555 125.9 A ASP 12 A O ASP 12 1_555 A CA 501 B CA CA 1_555 A ASP 30 A OD2 ASP 30 1_555 105.2 A ASN 15 A OD1 ASN 15 1_555 A CA 501 B CA CA 1_555 A ASP 30 A OD2 ASP 30 1_555 170.9 A CYS 18 A N CYS 18 1_555 A CA 501 B CA CA 1_555 A ASP 30 A OD2 ASP 30 1_555 83.9 A ASP 30 A OD1 ASP 30 1_555 A CA 501 B CA CA 1_555 A ASP 30 A OD2 ASP 30 1_555 44.1 A ASP 12 A O ASP 12 1_555 A CA 501 B CA CA 1_555 A ASP 33 A OD2 ASP 33 1_555 71.1 A ASN 15 A OD1 ASN 15 1_555 A CA 501 B CA CA 1_555 A ASP 33 A OD2 ASP 33 1_555 65.0 A CYS 18 A N CYS 18 1_555 A CA 501 B CA CA 1_555 A ASP 33 A OD2 ASP 33 1_555 138.7 A ASP 30 A OD1 ASP 30 1_555 A CA 501 B CA CA 1_555 A ASP 33 A OD2 ASP 33 1_555 80.9 A ASP 30 A OD2 ASP 30 1_555 A CA 501 B CA CA 1_555 A ASP 33 A OD2 ASP 33 1_555 106.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A H OD2 ASN ASP 15 33 1.60 9 A A H OD2 ASN ASP 15 33 1.60 10 A A H OD2 ASN ASP 15 33 1.60 13 A A H OD2 ASN ASP 15 33 1.60 16 A A O H GLU ASP 8 12 1.60 1 A GLU 2 -69.93 87.01 1 A ALA 3 -140.86 16.78 1 A CYS 4 61.56 145.02 1 A VAL 17 -95.90 -139.35 1 A CYS 18 -162.39 109.04 1 A ASP 30 46.43 28.14 2 A ALA 3 -140.25 16.18 2 A CYS 4 60.68 136.91 2 A VAL 17 -96.10 -141.53 2 A CYS 18 -162.06 105.46 2 A ASP 30 47.06 27.33 3 A ALA 3 -140.44 16.86 3 A CYS 4 61.68 139.95 3 A VAL 17 -97.36 -141.98 3 A ASP 30 48.20 23.58 4 A GLU 2 -102.05 58.84 4 A ALA 3 -140.41 17.62 4 A CYS 4 61.38 136.08 4 A VAL 17 -97.26 -141.48 4 A CYS 18 -161.03 105.67 4 A ASP 30 48.80 23.30 5 A ALA 3 -140.37 16.78 5 A CYS 4 61.30 138.63 5 A VAL 17 -97.36 -141.65 5 A ASP 30 47.91 23.85 6 A ALA 3 -140.68 17.12 6 A CYS 4 62.02 145.64 6 A VAL 17 -95.94 -141.43 6 A CYS 18 -160.94 105.72 6 A ASP 30 47.86 23.83 7 A ALA 3 -140.41 17.46 7 A CYS 4 61.66 138.08 7 A VAL 17 -95.74 -141.58 7 A CYS 18 -161.85 105.46 7 A ASP 30 47.35 26.73 8 A GLU 2 -95.29 44.88 8 A ALA 3 -140.57 18.67 8 A CYS 4 61.89 137.17 8 A VAL 17 -97.98 -139.79 8 A CYS 18 -163.18 105.89 8 A ASP 30 46.11 28.12 9 A GLU 2 -99.53 56.74 9 A ALA 3 -140.67 17.43 9 A CYS 4 62.27 144.14 9 A VAL 17 -97.95 -139.13 9 A CYS 18 -162.58 106.25 9 A ASP 30 46.01 28.00 10 A ALA 3 -140.31 16.87 10 A CYS 4 61.07 138.59 10 A VAL 17 -98.28 -139.07 10 A CYS 18 -163.32 106.26 10 A GLN 21 -57.24 -8.98 10 A ASP 30 46.24 28.38 11 A ALA 3 -140.35 17.01 11 A CYS 4 61.36 138.35 11 A VAL 17 -97.82 -139.10 11 A CYS 18 -163.24 106.82 11 A ASP 30 46.76 28.16 12 A GLU 2 -101.06 64.25 12 A ALA 3 -140.39 17.93 12 A CYS 4 61.56 136.95 12 A VAL 17 -97.55 -141.67 12 A ASP 30 48.51 23.16 13 A ALA 3 -140.32 16.89 13 A CYS 4 61.58 134.13 13 A VAL 17 -98.54 -139.02 13 A CYS 18 -161.91 106.35 13 A TRP 29 70.26 43.50 13 A ASP 30 44.86 29.26 14 A ALA 3 -140.33 16.48 14 A CYS 4 61.58 142.10 14 A VAL 17 -95.16 -141.31 14 A CYS 18 -162.85 105.82 14 A ASP 30 47.27 26.19 15 A ALA 3 -140.52 17.30 15 A CYS 4 61.54 139.11 15 A VAL 17 -97.72 -139.42 15 A CYS 18 -163.80 106.11 15 A ASP 30 46.65 27.81 16 A ALA 3 -140.31 17.26 16 A CYS 4 61.19 138.05 16 A VAL 17 -97.83 -139.61 16 A CYS 18 -163.15 106.15 16 A ASP 30 46.10 28.39 minimized average NMR Structure of a Prototype LNR Module from Human Notch1 1 N N 2 N N A GLU 8 A GLU 8 HELX_P A ALA 13 A ALA 13 1 1 6 A GLY 28 A GLY 28 HELX_P A ASP 33 A ASP 33 5 2 6 disulf 2.031 A CYS 4 A SG CYS 4 1_555 A CYS 27 A SG CYS 27 1_555 disulf 2.028 A CYS 9 A SG CYS 9 1_555 A CYS 22 A SG CYS 22 1_555 disulf 2.030 A CYS 18 A SG CYS 18 1_555 A CYS 34 A SG CYS 34 1_555 metalc 3.088 A ASP 12 A O ASP 12 1_555 A CA 501 B CA CA 1_555 metalc 2.311 A ASN 15 A OD1 ASN 15 1_555 A CA 501 B CA CA 1_555 metalc 3.231 A CYS 18 A N CYS 18 1_555 A CA 501 B CA CA 1_555 metalc 2.901 A ASP 30 A OD1 ASP 30 1_555 A CA 501 B CA CA 1_555 metalc 2.952 A ASP 30 A OD2 ASP 30 1_555 A CA 501 B CA CA 1_555 metalc 2.160 A ASP 33 A OD2 ASP 33 1_555 A CA 501 B CA CA 1_555 SIGNALING PROTEIN Notch signaling, LIN12/Notch repeat, calcium-binding domain, protein module, disulfide bond, SIGNALING PROTEIN NOTC1_HUMAN UNP 1 1447 P46531 EEACELPECQEDAGNKVCSLQCNNHACGWDGGDCS 1447 1481 1PB5 1 35 P46531 A 1 1 35 BINDING SITE FOR RESIDUE CA A 501 A CA 501 Software 6 A ASP 12 A ASP 12 6 1_555 A ASN 15 A ASN 15 6 1_555 A VAL 17 A VAL 17 6 1_555 A CYS 18 A CYS 18 6 1_555 A ASP 30 A ASP 30 6 1_555 A ASP 33 A ASP 33 6 1_555