1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Vardar, D.
North, C.L.
Sanchez-Irizarry, C.
Aster, J.C.
Blacklow, S.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
42
7061
7067
10.1021/bi034156y
12795601
Nuclear Magnetic Resonance Structure of a Prototype Lin12-Notch Repeat Module from Human Notch1
2003
10.2210/pdb1pb5/pdb
pdb_00001pb5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3717.964
Neurogenic locus notch homolog protein 1
First LNR module
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
Notch 1, hN1, translocation-associated notch protein TAN-1
no
no
EEACELPECQEDAGNKVCSLQCNNHACGWDGGDCS
EEACELPECQEDAGNKVCSLQCNNHACGWDGGDCS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
BL21DE3plysS
plasmid
pMM
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-06-17
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-05-14
REL
REL
CA
CALCIUM ION
The structure was determined using triple-resonance NMR spectroscopy
all calculated structures submitted,structures with the lowest energy
50
16
HNCA, HNCOCA, 13C HSQC
3D_15N-separated TOCSY, 2D TOCSY, 15N-HSQC, 15N-HMQC-J
3D_15N-separated TOCSY, 2D TOCSY, 15N-HSQC
10mM Ca2+
6.5
ambient
298
K
10mM Ca2+, 50mM PIPES
7.0
ambient
283
K
distance geometry, torsion angle dynamics, simulated annealing
1
minimized average structure
1mM LNRA U-15N, 10mM Ca2+, 0.5mM DSS pH 6.5
90% H2O/10% D2O
1mM LNRA U-15N,13C, 10mM Ca2+, 0.5mM DSS pH 6.5
90% H2O/10% D2O
1.5mM LNRA U-15N,13C, 10 mM Ca2+, 0.5mM DSS, 50 mM deuterated PIPES pH 7.0
90% H2O/10% D2O
collection
XwinNMR
Delaglio, F.
processing
NMRPipe
Johnson, B.
data analysis
NMRView
5.0.4
Brunger
structure solution
CNS
1.1
Brunger
refinement
CNS
1.1
600
Bruker
DMX
500
Bruker
DMX
400
Varian
UNITY
CA
501
2
CA
CA
501
A
GLU
1
n
1
GLU
1
A
GLU
2
n
2
GLU
2
A
ALA
3
n
3
ALA
3
A
CYS
4
n
4
CYS
4
A
GLU
5
n
5
GLU
5
A
LEU
6
n
6
LEU
6
A
PRO
7
n
7
PRO
7
A
GLU
8
n
8
GLU
8
A
CYS
9
n
9
CYS
9
A
GLN
10
n
10
GLN
10
A
GLU
11
n
11
GLU
11
A
ASP
12
n
12
ASP
12
A
ALA
13
n
13
ALA
13
A
GLY
14
n
14
GLY
14
A
ASN
15
n
15
ASN
15
A
LYS
16
n
16
LYS
16
A
VAL
17
n
17
VAL
17
A
CYS
18
n
18
CYS
18
A
SER
19
n
19
SER
19
A
LEU
20
n
20
LEU
20
A
GLN
21
n
21
GLN
21
A
CYS
22
n
22
CYS
22
A
ASN
23
n
23
ASN
23
A
ASN
24
n
24
ASN
24
A
HIS
25
n
25
HIS
25
A
ALA
26
n
26
ALA
26
A
CYS
27
n
27
CYS
27
A
GLY
28
n
28
GLY
28
A
TRP
29
n
29
TRP
29
A
ASP
30
n
30
ASP
30
A
GLY
31
n
31
GLY
31
A
GLY
32
n
32
GLY
32
A
ASP
33
n
33
ASP
33
A
CYS
34
n
34
CYS
34
A
SER
35
n
35
SER
35
A
author_defined_assembly
1
monomeric
A
ASP
12
A
O
ASP
12
1_555
A
CA
501
B
CA
CA
1_555
A
ASN
15
A
OD1
ASN
15
1_555
70.8
A
ASP
12
A
O
ASP
12
1_555
A
CA
501
B
CA
CA
1_555
A
CYS
18
A
N
CYS
18
1_555
146.1
A
ASN
15
A
OD1
ASN
15
1_555
A
CA
501
B
CA
CA
1_555
A
CYS
18
A
N
CYS
18
1_555
104.0
A
ASP
12
A
O
ASP
12
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
30
A
OD1
ASP
30
1_555
62.9
A
ASN
15
A
OD1
ASN
15
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
30
A
OD1
ASP
30
1_555
129.3
A
CYS
18
A
N
CYS
18
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
30
A
OD1
ASP
30
1_555
125.9
A
ASP
12
A
O
ASP
12
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
30
A
OD2
ASP
30
1_555
105.2
A
ASN
15
A
OD1
ASN
15
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
30
A
OD2
ASP
30
1_555
170.9
A
CYS
18
A
N
CYS
18
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
30
A
OD2
ASP
30
1_555
83.9
A
ASP
30
A
OD1
ASP
30
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
30
A
OD2
ASP
30
1_555
44.1
A
ASP
12
A
O
ASP
12
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
33
A
OD2
ASP
33
1_555
71.1
A
ASN
15
A
OD1
ASN
15
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
33
A
OD2
ASP
33
1_555
65.0
A
CYS
18
A
N
CYS
18
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
33
A
OD2
ASP
33
1_555
138.7
A
ASP
30
A
OD1
ASP
30
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
33
A
OD2
ASP
33
1_555
80.9
A
ASP
30
A
OD2
ASP
30
1_555
A
CA
501
B
CA
CA
1_555
A
ASP
33
A
OD2
ASP
33
1_555
106.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
H
OD2
ASN
ASP
15
33
1.60
9
A
A
H
OD2
ASN
ASP
15
33
1.60
10
A
A
H
OD2
ASN
ASP
15
33
1.60
13
A
A
H
OD2
ASN
ASP
15
33
1.60
16
A
A
O
H
GLU
ASP
8
12
1.60
1
A
GLU
2
-69.93
87.01
1
A
ALA
3
-140.86
16.78
1
A
CYS
4
61.56
145.02
1
A
VAL
17
-95.90
-139.35
1
A
CYS
18
-162.39
109.04
1
A
ASP
30
46.43
28.14
2
A
ALA
3
-140.25
16.18
2
A
CYS
4
60.68
136.91
2
A
VAL
17
-96.10
-141.53
2
A
CYS
18
-162.06
105.46
2
A
ASP
30
47.06
27.33
3
A
ALA
3
-140.44
16.86
3
A
CYS
4
61.68
139.95
3
A
VAL
17
-97.36
-141.98
3
A
ASP
30
48.20
23.58
4
A
GLU
2
-102.05
58.84
4
A
ALA
3
-140.41
17.62
4
A
CYS
4
61.38
136.08
4
A
VAL
17
-97.26
-141.48
4
A
CYS
18
-161.03
105.67
4
A
ASP
30
48.80
23.30
5
A
ALA
3
-140.37
16.78
5
A
CYS
4
61.30
138.63
5
A
VAL
17
-97.36
-141.65
5
A
ASP
30
47.91
23.85
6
A
ALA
3
-140.68
17.12
6
A
CYS
4
62.02
145.64
6
A
VAL
17
-95.94
-141.43
6
A
CYS
18
-160.94
105.72
6
A
ASP
30
47.86
23.83
7
A
ALA
3
-140.41
17.46
7
A
CYS
4
61.66
138.08
7
A
VAL
17
-95.74
-141.58
7
A
CYS
18
-161.85
105.46
7
A
ASP
30
47.35
26.73
8
A
GLU
2
-95.29
44.88
8
A
ALA
3
-140.57
18.67
8
A
CYS
4
61.89
137.17
8
A
VAL
17
-97.98
-139.79
8
A
CYS
18
-163.18
105.89
8
A
ASP
30
46.11
28.12
9
A
GLU
2
-99.53
56.74
9
A
ALA
3
-140.67
17.43
9
A
CYS
4
62.27
144.14
9
A
VAL
17
-97.95
-139.13
9
A
CYS
18
-162.58
106.25
9
A
ASP
30
46.01
28.00
10
A
ALA
3
-140.31
16.87
10
A
CYS
4
61.07
138.59
10
A
VAL
17
-98.28
-139.07
10
A
CYS
18
-163.32
106.26
10
A
GLN
21
-57.24
-8.98
10
A
ASP
30
46.24
28.38
11
A
ALA
3
-140.35
17.01
11
A
CYS
4
61.36
138.35
11
A
VAL
17
-97.82
-139.10
11
A
CYS
18
-163.24
106.82
11
A
ASP
30
46.76
28.16
12
A
GLU
2
-101.06
64.25
12
A
ALA
3
-140.39
17.93
12
A
CYS
4
61.56
136.95
12
A
VAL
17
-97.55
-141.67
12
A
ASP
30
48.51
23.16
13
A
ALA
3
-140.32
16.89
13
A
CYS
4
61.58
134.13
13
A
VAL
17
-98.54
-139.02
13
A
CYS
18
-161.91
106.35
13
A
TRP
29
70.26
43.50
13
A
ASP
30
44.86
29.26
14
A
ALA
3
-140.33
16.48
14
A
CYS
4
61.58
142.10
14
A
VAL
17
-95.16
-141.31
14
A
CYS
18
-162.85
105.82
14
A
ASP
30
47.27
26.19
15
A
ALA
3
-140.52
17.30
15
A
CYS
4
61.54
139.11
15
A
VAL
17
-97.72
-139.42
15
A
CYS
18
-163.80
106.11
15
A
ASP
30
46.65
27.81
16
A
ALA
3
-140.31
17.26
16
A
CYS
4
61.19
138.05
16
A
VAL
17
-97.83
-139.61
16
A
CYS
18
-163.15
106.15
16
A
ASP
30
46.10
28.39
minimized average
NMR Structure of a Prototype LNR Module from Human Notch1
1
N
N
2
N
N
A
GLU
8
A
GLU
8
HELX_P
A
ALA
13
A
ALA
13
1
1
6
A
GLY
28
A
GLY
28
HELX_P
A
ASP
33
A
ASP
33
5
2
6
disulf
2.031
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
27
A
SG
CYS
27
1_555
disulf
2.028
A
CYS
9
A
SG
CYS
9
1_555
A
CYS
22
A
SG
CYS
22
1_555
disulf
2.030
A
CYS
18
A
SG
CYS
18
1_555
A
CYS
34
A
SG
CYS
34
1_555
metalc
3.088
A
ASP
12
A
O
ASP
12
1_555
A
CA
501
B
CA
CA
1_555
metalc
2.311
A
ASN
15
A
OD1
ASN
15
1_555
A
CA
501
B
CA
CA
1_555
metalc
3.231
A
CYS
18
A
N
CYS
18
1_555
A
CA
501
B
CA
CA
1_555
metalc
2.901
A
ASP
30
A
OD1
ASP
30
1_555
A
CA
501
B
CA
CA
1_555
metalc
2.952
A
ASP
30
A
OD2
ASP
30
1_555
A
CA
501
B
CA
CA
1_555
metalc
2.160
A
ASP
33
A
OD2
ASP
33
1_555
A
CA
501
B
CA
CA
1_555
SIGNALING PROTEIN
Notch signaling, LIN12/Notch repeat, calcium-binding domain, protein module, disulfide bond, SIGNALING PROTEIN
NOTC1_HUMAN
UNP
1
1447
P46531
EEACELPECQEDAGNKVCSLQCNNHACGWDGGDCS
1447
1481
1PB5
1
35
P46531
A
1
1
35
BINDING SITE FOR RESIDUE CA A 501
A
CA
501
Software
6
A
ASP
12
A
ASP
12
6
1_555
A
ASN
15
A
ASN
15
6
1_555
A
VAL
17
A
VAL
17
6
1_555
A
CYS
18
A
CYS
18
6
1_555
A
ASP
30
A
ASP
30
6
1_555
A
ASP
33
A
ASP
33
6
1_555