1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Popenda, M. Biala, E. Milecki, J. Adamiak, R.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H16 N3 O8 P 337.223 n O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE RNA linking C11 H16 N5 O8 P 377.247 n O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE RNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 25 4589 4598 10.1093/nar/25.22.4589 9358170 Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r(CGCGCG)2 and 2'-O-Me(CGCGCG)2 under low salt conditions. 1997 UK NUCLEIC ACIDS RES. NARHAD 0389 0305-1048 25 4599 4607 Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA 1997 10.2210/pdb1pbl/pdb pdb_00001pbl 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1990.361 RNA (5'-R(*OMCP*OMGP*OMCP*OMGP*OMCP*OMG)-3') 2 syn polymer no yes (OMC)(OMG)(OMC)(OMG)(OMC)(OMG) CGCGCG A,B polyribonucleotide n n n n n n -25.627 1 19 A 1 B 12 0.104 A_OMC1:OMG12_B 1 -8.137 0.843 0.200 -0.285 -17.859 1 19 A 2 B 11 -0.299 A_OMG2:OMC11_B 2 -16.110 0.123 -0.195 -0.049 -2.263 1 19 A 3 B 10 -0.949 A_OMC3:OMG10_B 3 -18.364 0.537 0.013 -0.245 -16.899 1 19 A 4 B 9 2.424 A_OMG4:OMC9_B 4 -30.917 -0.352 -0.491 -0.181 -0.082 1 19 A 5 B 8 -0.870 A_OMC5:OMG8_B 5 -15.957 0.685 -0.133 -0.300 -8.236 1 19 A 6 B 7 -0.545 A_OMG6:OMC7_B 6 -26.762 -0.572 0.207 -0.266 1.936 36.370 A A 1 2 29.689 B B 12 11 2.922 17.687 0.103 -1.278 AA_OMC1OMG2:OMC11OMG12_BB 1 6.373 -10.696 31.275 -4.027 0.548 2.581 35.919 A A 2 3 20.623 B B 11 10 2.848 12.469 -0.332 -0.311 AA_OMG2OMC3:OMG10OMC11_BB 2 -0.526 0.870 33.748 -2.032 0.473 2.886 41.107 A A 3 4 37.582 B B 10 9 3.505 24.672 0.308 0.054 AA_OMC3OMG4:OMC9OMG10_BB 3 4.533 -6.905 32.832 -2.865 0.102 2.684 38.801 A A 4 5 14.827 B B 9 8 2.739 9.746 0.438 0.254 AA_OMG4OMC5:OMG8OMC9_BB 4 -2.599 3.954 37.516 -0.623 -0.927 2.211 36.754 A A 5 6 31.564 B B 8 7 3.152 18.995 1.041 -1.066 AA_OMC5OMG6:OMC7OMG8_BB 5 0.935 -1.554 31.598 -3.989 -1.538 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1997-07-07 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag 1 STRUCTURE Y BNL 1996-08-05 REL R 1/6 VALUE 106 1 6.5 300 K IRMA, RMD BIOSYM refinement Discover structure solution NMRCHITECT structure solution Discover 500 Varian UNITYPLUS OMC 1 n 1 OMC 1 A OMG 2 n 2 OMG 2 A OMC 3 n 3 OMC 3 A OMG 4 n 4 OMG 4 A OMC 5 n 5 OMC 5 A OMG 6 n 6 OMG 6 A OMC 7 n 1 OMC 7 B OMG 8 n 2 OMG 8 B OMC 9 n 3 OMC 9 B OMG 10 n 4 OMG 10 B OMC 11 n 5 OMC 11 B OMG 12 n 6 OMG 12 B author_defined_assembly 2 dimeric A OMC 1 O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE A OMC 1 C A OMG 2 O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE A OMG 2 G A OMC 3 O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE A OMC 3 C A OMG 4 O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE A OMG 4 G A OMC 5 O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE A OMC 5 C A OMG 6 O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE A OMG 6 G B OMC 7 O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE B OMC 1 C B OMG 8 O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE B OMG 2 G B OMC 9 O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE B OMC 3 C B OMG 10 O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE B OMG 4 G B OMC 11 O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE B OMC 5 C B OMG 12 O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE B OMG 6 G 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -7.25 1.20 119.70 112.45 A A A C3' O3' P OMC OMC OMG 5 5 6 Y STRUCTURE OF RIBONUCLEIC ACID, NMR, 1 STRUCTURE 1 N N 1 N N covale 1.613 both A OMC 1 A O3' OMC 1 1_555 A OMG 2 A P OMG 2 1_555 covale 1.613 both A OMG 2 A O3' OMG 2 1_555 A OMC 3 A P OMC 3 1_555 covale 1.613 both A OMC 3 A O3' OMC 3 1_555 A OMG 4 A P OMG 4 1_555 covale 1.613 both A OMG 4 A O3' OMG 4 1_555 A OMC 5 A P OMC 5 1_555 covale 1.618 both A OMC 5 A O3' OMC 5 1_555 A OMG 6 A P OMG 6 1_555 covale 1.615 both B OMC 7 B O3' OMC 1 1_555 B OMG 8 B P OMG 2 1_555 covale 1.611 both B OMG 8 B O3' OMG 2 1_555 B OMC 9 B P OMC 3 1_555 covale 1.618 both B OMC 9 B O3' OMC 3 1_555 B OMG 10 B P OMG 4 1_555 covale 1.615 both B OMG 10 B O3' OMG 4 1_555 B OMC 11 B P OMC 5 1_555 covale 1.620 both B OMC 11 B O3' OMC 5 1_555 B OMG 12 B P OMG 6 1_555 hydrog WATSON-CRICK A OMC 1 A N3 OMC 1 1_555 B OMG 12 B N1 OMG 6 1_555 hydrog WATSON-CRICK A OMC 1 A N4 OMC 1 1_555 B OMG 12 B O6 OMG 6 1_555 hydrog WATSON-CRICK A OMC 1 A O2 OMC 1 1_555 B OMG 12 B N2 OMG 6 1_555 hydrog WATSON-CRICK A OMG 2 A N1 OMG 2 1_555 B OMC 11 B N3 OMC 5 1_555 hydrog WATSON-CRICK A OMG 2 A N2 OMG 2 1_555 B OMC 11 B O2 OMC 5 1_555 hydrog WATSON-CRICK A OMG 2 A O6 OMG 2 1_555 B OMC 11 B N4 OMC 5 1_555 hydrog WATSON-CRICK A OMC 3 A N3 OMC 3 1_555 B OMG 10 B N1 OMG 4 1_555 hydrog WATSON-CRICK A OMC 3 A N4 OMC 3 1_555 B OMG 10 B O6 OMG 4 1_555 hydrog WATSON-CRICK A OMC 3 A O2 OMC 3 1_555 B OMG 10 B N2 OMG 4 1_555 hydrog WATSON-CRICK A OMG 4 A N1 OMG 4 1_555 B OMC 9 B N3 OMC 3 1_555 hydrog WATSON-CRICK A OMG 4 A N2 OMG 4 1_555 B OMC 9 B O2 OMC 3 1_555 hydrog WATSON-CRICK A OMG 4 A O6 OMG 4 1_555 B OMC 9 B N4 OMC 3 1_555 hydrog WATSON-CRICK A OMC 5 A N3 OMC 5 1_555 B OMG 8 B N1 OMG 2 1_555 hydrog WATSON-CRICK A OMC 5 A N4 OMC 5 1_555 B OMG 8 B O6 OMG 2 1_555 hydrog WATSON-CRICK A OMC 5 A O2 OMC 5 1_555 B OMG 8 B N2 OMG 2 1_555 hydrog WATSON-CRICK A OMG 6 A N1 OMG 6 1_555 B OMC 7 B N3 OMC 1 1_555 hydrog WATSON-CRICK A OMG 6 A N2 OMG 6 1_555 B OMC 7 B O2 OMC 1 1_555 hydrog WATSON-CRICK A OMG 6 A O6 OMG 6 1_555 B OMC 7 B N4 OMC 1 1_555 RNA RIBONUCLEIC ACID, RNA DUPLEX, RNA 1PBL PDB 1 1PBL 1 6 1PBL 1 6 1PBL A 1 1 6 7 12 1PBL 7 12 1PBL B 1 1 6 1 P 1