1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Popenda, M.
Biala, E.
Milecki, J.
Adamiak, R.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H16 N3 O8 P
337.223
n
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
RNA linking
C11 H16 N5 O8 P
377.247
n
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
25
4589
4598
10.1093/nar/25.22.4589
9358170
Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r(CGCGCG)2 and 2'-O-Me(CGCGCG)2 under low salt conditions.
1997
UK
NUCLEIC ACIDS RES.
NARHAD
0389
0305-1048
25
4599
4607
Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA
1997
10.2210/pdb1pbl/pdb
pdb_00001pbl
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1990.361
RNA (5'-R(*OMCP*OMGP*OMCP*OMGP*OMCP*OMG)-3')
2
syn
polymer
no
yes
(OMC)(OMG)(OMC)(OMG)(OMC)(OMG)
CGCGCG
A,B
polyribonucleotide
n
n
n
n
n
n
-25.627
1
19
A
1
B
12
0.104
A_OMC1:OMG12_B
1
-8.137
0.843
0.200
-0.285
-17.859
1
19
A
2
B
11
-0.299
A_OMG2:OMC11_B
2
-16.110
0.123
-0.195
-0.049
-2.263
1
19
A
3
B
10
-0.949
A_OMC3:OMG10_B
3
-18.364
0.537
0.013
-0.245
-16.899
1
19
A
4
B
9
2.424
A_OMG4:OMC9_B
4
-30.917
-0.352
-0.491
-0.181
-0.082
1
19
A
5
B
8
-0.870
A_OMC5:OMG8_B
5
-15.957
0.685
-0.133
-0.300
-8.236
1
19
A
6
B
7
-0.545
A_OMG6:OMC7_B
6
-26.762
-0.572
0.207
-0.266
1.936
36.370
A
A
1
2
29.689
B
B
12
11
2.922
17.687
0.103
-1.278
AA_OMC1OMG2:OMC11OMG12_BB
1
6.373
-10.696
31.275
-4.027
0.548
2.581
35.919
A
A
2
3
20.623
B
B
11
10
2.848
12.469
-0.332
-0.311
AA_OMG2OMC3:OMG10OMC11_BB
2
-0.526
0.870
33.748
-2.032
0.473
2.886
41.107
A
A
3
4
37.582
B
B
10
9
3.505
24.672
0.308
0.054
AA_OMC3OMG4:OMC9OMG10_BB
3
4.533
-6.905
32.832
-2.865
0.102
2.684
38.801
A
A
4
5
14.827
B
B
9
8
2.739
9.746
0.438
0.254
AA_OMG4OMC5:OMG8OMC9_BB
4
-2.599
3.954
37.516
-0.623
-0.927
2.211
36.754
A
A
5
6
31.564
B
B
8
7
3.152
18.995
1.041
-1.066
AA_OMC5OMG6:OMC7OMG8_BB
5
0.935
-1.554
31.598
-3.989
-1.538
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-07-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
1 STRUCTURE
Y
BNL
1996-08-05
REL
R 1/6 VALUE
106
1
6.5
300
K
IRMA, RMD
BIOSYM
refinement
Discover
structure solution
NMRCHITECT
structure solution
Discover
500
Varian
UNITYPLUS
OMC
1
n
1
OMC
1
A
OMG
2
n
2
OMG
2
A
OMC
3
n
3
OMC
3
A
OMG
4
n
4
OMG
4
A
OMC
5
n
5
OMC
5
A
OMG
6
n
6
OMG
6
A
OMC
7
n
1
OMC
7
B
OMG
8
n
2
OMG
8
B
OMC
9
n
3
OMC
9
B
OMG
10
n
4
OMG
10
B
OMC
11
n
5
OMC
11
B
OMG
12
n
6
OMG
12
B
author_defined_assembly
2
dimeric
A
OMC
1
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
A
OMC
1
C
A
OMG
2
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
OMG
2
G
A
OMC
3
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
A
OMC
3
C
A
OMG
4
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
OMG
4
G
A
OMC
5
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
A
OMC
5
C
A
OMG
6
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
OMG
6
G
B
OMC
7
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
B
OMC
1
C
B
OMG
8
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
B
OMG
2
G
B
OMC
9
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
B
OMC
3
C
B
OMG
10
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
B
OMG
4
G
B
OMC
11
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
B
OMC
5
C
B
OMG
12
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
B
OMG
6
G
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-7.25
1.20
119.70
112.45
A
A
A
C3'
O3'
P
OMC
OMC
OMG
5
5
6
Y
STRUCTURE OF RIBONUCLEIC ACID, NMR, 1 STRUCTURE
1
N
N
1
N
N
covale
1.613
both
A
OMC
1
A
O3'
OMC
1
1_555
A
OMG
2
A
P
OMG
2
1_555
covale
1.613
both
A
OMG
2
A
O3'
OMG
2
1_555
A
OMC
3
A
P
OMC
3
1_555
covale
1.613
both
A
OMC
3
A
O3'
OMC
3
1_555
A
OMG
4
A
P
OMG
4
1_555
covale
1.613
both
A
OMG
4
A
O3'
OMG
4
1_555
A
OMC
5
A
P
OMC
5
1_555
covale
1.618
both
A
OMC
5
A
O3'
OMC
5
1_555
A
OMG
6
A
P
OMG
6
1_555
covale
1.615
both
B
OMC
7
B
O3'
OMC
1
1_555
B
OMG
8
B
P
OMG
2
1_555
covale
1.611
both
B
OMG
8
B
O3'
OMG
2
1_555
B
OMC
9
B
P
OMC
3
1_555
covale
1.618
both
B
OMC
9
B
O3'
OMC
3
1_555
B
OMG
10
B
P
OMG
4
1_555
covale
1.615
both
B
OMG
10
B
O3'
OMG
4
1_555
B
OMC
11
B
P
OMC
5
1_555
covale
1.620
both
B
OMC
11
B
O3'
OMC
5
1_555
B
OMG
12
B
P
OMG
6
1_555
hydrog
WATSON-CRICK
A
OMC
1
A
N3
OMC
1
1_555
B
OMG
12
B
N1
OMG
6
1_555
hydrog
WATSON-CRICK
A
OMC
1
A
N4
OMC
1
1_555
B
OMG
12
B
O6
OMG
6
1_555
hydrog
WATSON-CRICK
A
OMC
1
A
O2
OMC
1
1_555
B
OMG
12
B
N2
OMG
6
1_555
hydrog
WATSON-CRICK
A
OMG
2
A
N1
OMG
2
1_555
B
OMC
11
B
N3
OMC
5
1_555
hydrog
WATSON-CRICK
A
OMG
2
A
N2
OMG
2
1_555
B
OMC
11
B
O2
OMC
5
1_555
hydrog
WATSON-CRICK
A
OMG
2
A
O6
OMG
2
1_555
B
OMC
11
B
N4
OMC
5
1_555
hydrog
WATSON-CRICK
A
OMC
3
A
N3
OMC
3
1_555
B
OMG
10
B
N1
OMG
4
1_555
hydrog
WATSON-CRICK
A
OMC
3
A
N4
OMC
3
1_555
B
OMG
10
B
O6
OMG
4
1_555
hydrog
WATSON-CRICK
A
OMC
3
A
O2
OMC
3
1_555
B
OMG
10
B
N2
OMG
4
1_555
hydrog
WATSON-CRICK
A
OMG
4
A
N1
OMG
4
1_555
B
OMC
9
B
N3
OMC
3
1_555
hydrog
WATSON-CRICK
A
OMG
4
A
N2
OMG
4
1_555
B
OMC
9
B
O2
OMC
3
1_555
hydrog
WATSON-CRICK
A
OMG
4
A
O6
OMG
4
1_555
B
OMC
9
B
N4
OMC
3
1_555
hydrog
WATSON-CRICK
A
OMC
5
A
N3
OMC
5
1_555
B
OMG
8
B
N1
OMG
2
1_555
hydrog
WATSON-CRICK
A
OMC
5
A
N4
OMC
5
1_555
B
OMG
8
B
O6
OMG
2
1_555
hydrog
WATSON-CRICK
A
OMC
5
A
O2
OMC
5
1_555
B
OMG
8
B
N2
OMG
2
1_555
hydrog
WATSON-CRICK
A
OMG
6
A
N1
OMG
6
1_555
B
OMC
7
B
N3
OMC
1
1_555
hydrog
WATSON-CRICK
A
OMG
6
A
N2
OMG
6
1_555
B
OMC
7
B
O2
OMC
1
1_555
hydrog
WATSON-CRICK
A
OMG
6
A
O6
OMG
6
1_555
B
OMC
7
B
N4
OMC
1
1_555
RNA
RIBONUCLEIC ACID, RNA DUPLEX, RNA
1PBL
PDB
1
1PBL
1
6
1PBL
1
6
1PBL
A
1
1
6
7
12
1PBL
7
12
1PBL
B
1
1
6
1
P 1