1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Popenda, M.
Biala, E.
Milecki, J.
Adamiak, R.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
N
14
N
N
N
15
N
C
N
16
N
O
N
17
N
N
N
18
N
C
N
19
N
N
N
20
N
C
N
21
N
C
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
O
N
37
N
P
N
38
N
O
N
39
N
O
N
40
N
O
N
41
N
C
N
42
R
C
N
43
N
O
N
44
S
C
N
45
N
O
N
46
R
C
N
47
N
O
N
48
R
C
Y
49
N
N
Y
50
N
C
Y
51
N
N
Y
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
C
N
57
N
N
N
58
N
N
Y
59
N
C
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
Y
61
N
sing
Y
62
N
sing
Y
63
N
doub
N
64
N
sing
Y
65
N
sing
N
66
N
sing
Y
67
N
doub
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
25
4589
4598
10.1093/nar/25.22.4589
9358170
Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r(CGCGCG)2 and 2'-O-Me(CGCGCG)2 under low salt conditions.
1997
10.2210/pdb1pbm/pdb
pdb_00001pbm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1906.205
RNA (5'-R(*CP*GP*CP*GP*CP*G)-3')
2
syn
polymer
no
no
CGCGCG
CGCGCG
A,B
polyribonucleotide
n
n
n
n
n
n
9.909
1
19
A
1
B
12
-4.205
A_C1:G12_B
1
-31.115
-0.122
0.498
-0.177
2.594
1
19
A
2
B
11
-4.309
A_G2:C11_B
2
-17.509
-0.576
0.278
-0.176
4.086
1
19
A
3
B
10
-3.511
A_C3:G10_B
3
-21.524
0.304
0.234
-0.136
-1.685
1
19
A
4
B
9
-3.882
A_G4:C9_B
4
-21.420
-0.232
0.249
-0.133
-2.131
1
19
A
5
B
8
-3.994
A_C5:G8_B
5
-17.628
0.565
0.226
-0.175
-11.918
1
19
A
6
B
7
-3.782
A_G6:C7_B
6
-32.355
0.010
0.321
-0.160
2.081
35.929
A
A
1
2
28.820
B
B
12
11
2.985
17.089
-0.539
-1.275
AA_C1G2:C11G12_BB
1
-2.301
3.881
31.641
-4.087
0.602
2.838
36.313
A
A
2
3
12.784
B
B
11
10
3.071
7.907
-0.324
-0.816
AA_G2C3:G10C11_BB
2
-1.094
1.768
35.454
-2.320
0.380
2.165
38.082
A
A
3
4
31.453
B
B
10
9
3.000
19.603
-0.062
-0.864
AA_C3G4:C9G10_BB
3
-0.229
0.368
32.810
-3.448
0.070
2.864
35.996
A
A
4
5
13.556
B
B
9
8
3.110
8.304
0.277
-0.788
AA_G4C5:G8C9_BB
4
1.493
-2.438
35.025
-2.370
-0.251
2.030
37.623
A
A
5
6
32.870
B
B
8
7
3.074
20.137
0.519
-1.193
AA_C5G6:C7G8_BB
5
2.925
-4.775
31.815
-4.081
-0.481
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Data collection
1
0
1997-07-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
1 STRUCTURE
Y
BNL
1996-08-05
REL
R 1/6 VALUE
106
1
6.5
300
K
IRMA, RMD
BIOSYM
refinement
Discover
structure solution
Felix
structure solution
NMRCHITECT
structure solution
Discover
500
Varian
UNITYPLUS
C
1
n
1
C
1
A
G
2
n
2
G
2
A
C
3
n
3
C
3
A
G
4
n
4
G
4
A
C
5
n
5
C
5
A
G
6
n
6
G
6
A
C
7
n
1
C
7
B
G
8
n
2
G
8
B
C
9
n
3
C
9
B
G
10
n
4
G
10
B
C
11
n
5
C
11
B
G
12
n
6
G
12
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C
1
0.098
SIDE CHAIN
1
A
G
2
0.135
SIDE CHAIN
1
A
C
3
0.112
SIDE CHAIN
1
A
G
4
0.075
SIDE CHAIN
1
B
C
7
0.097
SIDE CHAIN
1
B
G
8
0.133
SIDE CHAIN
1
B
C
9
0.113
SIDE CHAIN
1
B
G
10
0.068
SIDE CHAIN
1
3.49
0.50
111.50
114.99
A
A
A
C5
C6
N1
G
G
G
2
2
2
N
1
2.78
0.40
106.40
109.18
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
1
-3.61
0.60
119.90
116.29
A
A
A
N1
C6
O6
G
G
G
2
2
2
N
1
3.59
0.50
111.50
115.09
A
A
A
C5
C6
N1
G
G
G
4
4
4
N
1
2.45
0.40
106.40
108.85
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
1
3.12
0.50
111.50
114.62
A
A
A
C5
C6
N1
G
G
G
6
6
6
N
1
2.76
0.40
106.40
109.16
A
A
A
C8
N9
C4
G
G
G
6
6
6
N
1
-3.87
0.60
119.90
116.03
A
A
A
N1
C6
O6
G
G
G
6
6
6
N
1
3.63
0.50
111.50
115.13
B
B
B
C5
C6
N1
G
G
G
8
8
8
N
1
2.59
0.40
106.40
108.99
B
B
B
C8
N9
C4
G
G
G
8
8
8
N
1
-3.79
0.60
119.90
116.11
B
B
B
N1
C6
O6
G
G
G
8
8
8
N
1
2.47
0.40
121.90
124.37
B
B
B
N3
C4
C5
C
C
C
9
9
9
N
1
3.48
0.50
111.50
114.98
B
B
B
C5
C6
N1
G
G
G
10
10
10
N
1
2.47
0.40
106.40
108.87
B
B
B
C8
N9
C4
G
G
G
10
10
10
N
1
-3.63
0.60
119.90
116.27
B
B
B
N1
C6
O6
G
G
G
10
10
10
N
1
3.15
0.50
111.50
114.65
B
B
B
C5
C6
N1
G
G
G
12
12
12
N
1
2.65
0.40
106.40
109.05
B
B
B
C8
N9
C4
G
G
G
12
12
12
N
1
-3.93
0.60
119.90
115.97
B
B
B
N1
C6
O6
G
G
G
12
12
12
N
STRUCTURE OF RIBONUCLEIC ACID, NMR, 1 STRUCTURE
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
C
1
A
N3
C
1
1_555
B
G
12
B
N1
G
6
1_555
hydrog
WATSON-CRICK
A
C
1
A
N4
C
1
1_555
B
G
12
B
O6
G
6
1_555
hydrog
WATSON-CRICK
A
C
1
A
O2
C
1
1_555
B
G
12
B
N2
G
6
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
B
C
11
B
N3
C
5
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
B
C
11
B
O2
C
5
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
B
C
11
B
N4
C
5
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
B
G
10
B
N1
G
4
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
B
G
10
B
O6
G
4
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
B
G
10
B
N2
G
4
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
B
C
9
B
N3
C
3
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
B
C
9
B
O2
C
3
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
B
C
9
B
N4
C
3
1_555
hydrog
WATSON-CRICK
A
C
5
A
N3
C
5
1_555
B
G
8
B
N1
G
2
1_555
hydrog
WATSON-CRICK
A
C
5
A
N4
C
5
1_555
B
G
8
B
O6
G
2
1_555
hydrog
WATSON-CRICK
A
C
5
A
O2
C
5
1_555
B
G
8
B
N2
G
2
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
B
C
7
B
N3
C
1
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
B
C
7
B
O2
C
1
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
B
C
7
B
N4
C
1
1_555
RNA
RIBONUCLEIC ACID, RNA DUPLEX, RNA
1PBM
PDB
1
1PBM
1
6
1PBM
1
6
1PBM
A
1
1
6
7
12
1PBM
7
12
1PBM
B
1
1
6
1
P 1