1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Fourmy, D.
Recht, M.I.
Blanchard, S.
Puglisi, J.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 O5
150.130
beta-D-ribofuranose
D-saccharide, beta linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C6 H14 N2 O3
162.187
2-DEOXYSTREPTAMINE
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C6 H14 N2 O4
178.186
2,6-diamino-2,6-dideoxy-beta-L-idopyranose
L-saccharide, beta linking
C6 H13 N O5
179.171
2-amino-2-deoxy-alpha-D-glucopyranose
D-saccharide, alpha linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
US
Science
SCIEAS
0038
0036-8075
274
1367
1371
10.1126/science.274.5291.1367
8910275
Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic.
1996
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
NTS 1404/1412-1488/1497
8656.185
16S RIBOSOMAL RNA
1
syn
polymer
310.301
2,6-diamino-2,6-dideoxy-beta-L-idopyranose-(1-3)-beta-D-ribofuranose
1
man
branched
179.171
2-amino-2-deoxy-alpha-D-glucopyranose
1
man
non-polymer
162.187
2-DEOXYSTREPTAMINE
1
syn
non-polymer
no
no
GGCGUCACACCUUCGGGUGAAGUCGCC
GGCGUCACACCUUCGGGUGAAGUCGCC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
19.297
1
19
A
1
A
27
-1.441
A_G1:C27_A
1
21.940
-0.230
0.354
0.211
9.438
1
19
A
2
A
26
-2.840
A_G2:C26_A
2
-1.990
-0.154
-1.290
-0.182
12.964
1
19
A
3
A
25
3.386
A_C3:G25_A
3
-8.924
0.193
-1.357
-0.013
-20.244
1
19
A
4
A
24
4.306
A_G4:C24_A
4
-17.883
-0.257
-1.197
0.078
12.849
1
19
A
6
A
22
-4.339
A_C6:G22_A
5
7.557
0.064
-1.329
-0.037
6.966
1
19
A
8
A
19
-2.410
A_C8:G19_A
6
-19.429
0.171
0.444
0.107
-12.418
1
20
A
9
A
18
-6.316
A_A9:U18_A
7
-26.877
0.235
0.306
0.160
-14.146
1
19
A
10
A
17
-3.519
A_C10:G17_A
8
-17.498
0.041
0.619
0.175
-2.399
1
19
A
11
A
16
-5.820
A_C11:G16_A
9
-11.208
0.135
0.679
0.113
-8.848
2
A
12
A
15
-111.223
A_U12:G15_A
10
-6.883
0.317
1.018
-5.990
2.665
30.221
A
A
1
2
25.016
A
A
27
26
4.005
12.280
-0.132
-1.474
AA_G1G2:C26C27_AA
1
12.220
-24.895
24.858
-5.630
3.042
3.382
27.273
A
A
2
3
3.978
A
A
26
25
3.494
1.874
0.380
-1.659
AA_G2C3:G25C26_AA
2
0.708
-1.503
27.200
-4.011
-0.620
3.447
36.891
A
A
3
4
32.324
A
A
25
24
4.700
19.478
-0.152
-1.121
AA_C3G4:C24G25_AA
3
1.052
-1.746
31.465
-5.339
0.433
6.400
58.869
A
A
4
6
0.016
A
A
24
22
6.426
0.015
0.402
-2.550
AA_G4C6:G22C24_AA
4
-2.921
2.973
58.803
-2.596
-0.704
3.101
42.701
A
A
8
9
16.131
A
A
19
18
3.576
11.586
0.454
-1.461
AA_C8A9:U18G19_AA
5
5.003
-6.966
40.876
-3.222
-0.098
3.516
30.513
A
A
9
10
-4.046
A
A
18
17
3.428
-2.127
0.092
-1.383
AA_A9C10:G17U18_AA
6
0.979
-1.862
30.425
-2.178
0.032
3.134
27.994
A
A
10
11
1.344
A
A
17
16
3.168
0.650
0.112
-1.375
AA_C10C11:G16G17_AA
7
-0.329
0.680
27.985
-2.991
-0.307
3.536
112.438
A
A
11
12
1.304
A
A
16
15
3.532
2.168
0.926
-1.054
AA_C11U12:G15G16_AA
8
3.482
-2.095
112.389
-0.661
-0.514
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nmr_software
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Non-polymer description
Atomic model
Data collection
Derived calculations
Other
Structure summary
1
0
1997-09-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2013-01-16
2
0
2020-07-29
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
PA3
30
n
B
BDR
1
PA4
31
n
B
IDG
2
DRibfb
b-D-ribofuranose
b-D-Ribf
Rib
b-L-IdopN6N
DGlcpNa
a-D-glucopyranosamine
a-D-GlcpN
GlcN
Y
BNL
1996-09-12
REL
oligosaccharide
WURCS=2.0/2,2,1/[a222h-1b_1-4][a2121h-1b_1-5_2*N_6*N]/1-2/a3-b1
2
PDB2Glycan
1.1.0
WURCS
[][D-1-deoxy-Ribf]{[(3+1)][b-L-IdopN6N]{}}
2
PDB-CARE
LINUCS
C1
O3
IDG
BDR
2
1
2
O1
HO3
sing
n
n
PA1
2-amino-2-deoxy-alpha-D-glucopyranose
CYY
2-DEOXYSTREPTAMINE
10MM NA PHOSPHATE
1
6.4
308
K
BIOSYM
refinement
Discover
PA1
28
3
PA1
PA1
101
A
PA2
29
4
CYY
CYY
102
A
G
1
n
1
G
1
A
G
2
n
2
G
2
A
C
3
n
3
C
3
A
G
4
n
4
G
4
A
U
5
n
5
U
5
A
C
6
n
6
C
6
A
A
7
n
7
A
7
A
C
8
n
8
C
8
A
A
9
n
9
A
9
A
C
10
n
10
C
10
A
C
11
n
11
C
11
A
U
12
n
12
U
12
A
U
13
n
13
U
13
A
C
14
n
14
C
14
A
G
15
n
15
G
15
A
G
16
n
16
G
16
A
G
17
n
17
G
17
A
U
18
n
18
U
18
A
G
19
n
19
G
19
A
A
20
n
20
A
20
A
A
21
n
21
A
21
A
G
22
n
22
G
22
A
U
23
n
23
U
23
A
C
24
n
24
C
24
A
G
25
n
25
G
25
A
C
26
n
26
C
26
A
C
27
n
27
C
27
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
G
15
0.073
SIDE CHAIN
1
A
G
16
0.081
SIDE CHAIN
1
A
G
19
0.051
SIDE CHAIN
1
A
A
20
0.080
SIDE CHAIN
1
A
G
22
0.090
SIDE CHAIN
1
A
U
23
0.059
SIDE CHAIN
1
A
C
27
0.125
SIDE CHAIN
1
-10.21
1.50
119.60
109.39
A
A
A
OP1
P
OP2
G
G
G
1
1
1
N
1
11.20
0.50
111.90
123.10
A
A
A
C2
N3
C4
G
G
G
1
1
1
N
1
-11.23
0.50
128.60
117.37
A
A
A
N3
C4
C5
G
G
G
1
1
1
N
1
3.37
0.50
111.50
114.87
A
A
A
C5
C6
N1
G
G
G
1
1
1
N
1
2.62
0.40
110.80
113.42
A
A
A
C4
C5
N7
G
G
G
1
1
1
N
1
-7.10
0.50
104.30
97.20
A
A
A
C5
N7
C8
G
G
G
1
1
1
N
1
8.92
0.50
113.10
122.02
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
1
-7.05
0.40
106.40
99.35
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
1
2.60
0.40
105.40
108.00
A
A
A
N9
C4
C5
G
G
G
1
1
1
N
1
8.64
0.60
126.00
134.64
A
A
A
N3
C4
N9
G
G
G
1
1
1
N
1
-4.08
0.60
130.40
126.32
A
A
A
C6
C5
N7
G
G
G
1
1
1
N
1
-4.54
0.60
128.60
124.06
A
A
A
C5
C6
O6
G
G
G
1
1
1
N
1
-10.59
1.50
119.60
109.01
A
A
A
OP1
P
OP2
G
G
G
2
2
2
N
1
10.96
0.50
111.90
122.86
A
A
A
C2
N3
C4
G
G
G
2
2
2
N
1
-11.07
0.50
128.60
117.53
A
A
A
N3
C4
C5
G
G
G
2
2
2
N
1
3.36
0.50
111.50
114.86
A
A
A
C5
C6
N1
G
G
G
2
2
2
N
1
2.57
0.40
110.80
113.37
A
A
A
C4
C5
N7
G
G
G
2
2
2
N
1
-7.15
0.50
104.30
97.15
A
A
A
C5
N7
C8
G
G
G
2
2
2
N
1
8.80
0.50
113.10
121.90
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
1
-6.98
0.40
106.40
99.42
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
1
2.68
0.40
105.40
108.08
A
A
A
N9
C4
C5
G
G
G
2
2
2
N
1
8.39
0.60
126.00
134.39
A
A
A
N3
C4
N9
G
G
G
2
2
2
N
1
-3.79
0.60
130.40
126.61
A
A
A
C6
C5
N7
G
G
G
2
2
2
N
1
-5.25
0.60
128.60
123.35
A
A
A
C5
C6
O6
G
G
G
2
2
2
N
1
-10.51
1.50
119.60
109.09
A
A
A
OP1
P
OP2
C
C
C
3
3
3
N
1
-3.25
0.40
120.30
117.05
A
A
A
C6
N1
C2
C
C
C
3
3
3
N
1
3.56
0.50
117.40
120.96
A
A
A
C4
C5
C6
C
C
C
3
3
3
N
1
-10.70
1.50
119.60
108.90
A
A
A
OP1
P
OP2
G
G
G
4
4
4
N
1
11.16
0.50
111.90
123.06
A
A
A
C2
N3
C4
G
G
G
4
4
4
N
1
-10.82
0.50
128.60
117.78
A
A
A
N3
C4
C5
G
G
G
4
4
4
N
1
3.32
0.50
111.50
114.82
A
A
A
C5
C6
N1
G
G
G
4
4
4
N
1
2.45
0.40
110.80
113.25
A
A
A
C4
C5
N7
G
G
G
4
4
4
N
1
-7.21
0.50
104.30
97.09
A
A
A
C5
N7
C8
G
G
G
4
4
4
N
1
8.75
0.50
113.10
121.85
A
A
A
N7
C8
N9
G
G
G
4
4
4
N
1
-7.01
0.40
106.40
99.39
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
1
3.02
0.40
105.40
108.42
A
A
A
N9
C4
C5
G
G
G
4
4
4
N
1
7.80
0.60
126.00
133.80
A
A
A
N3
C4
N9
G
G
G
4
4
4
N
1
-3.62
0.60
130.40
126.78
A
A
A
C6
C5
N7
G
G
G
4
4
4
N
1
-4.35
0.60
128.60
124.25
A
A
A
C5
C6
O6
G
G
G
4
4
4
N
1
-10.80
1.50
119.60
108.80
A
A
A
OP1
P
OP2
U
U
U
5
5
5
N
1
5.38
0.70
108.50
113.88
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
1
5.77
0.60
114.90
120.67
A
A
A
N1
C2
N3
U
U
U
5
5
5
N
1
-3.23
0.50
122.70
119.47
A
A
A
C5
C6
N1
U
U
U
5
5
5
N
1
-5.42
0.70
122.20
116.78
A
A
A
N3
C2
O2
U
U
U
5
5
5
N
1
-4.38
0.60
125.90
121.52
A
A
A
C5
C4
O4
U
U
U
5
5
5
N
1
-10.68
1.50
119.60
108.92
A
A
A
OP1
P
OP2
C
C
C
6
6
6
N
1
5.32
0.70
108.50
113.82
A
A
A
O4'
C1'
N1
C
C
C
6
6
6
N
1
-3.12
0.40
120.30
117.18
A
A
A
C6
N1
C2
C
C
C
6
6
6
N
1
3.57
0.50
117.40
120.97
A
A
A
C4
C5
C6
C
C
C
6
6
6
N
1
-10.62
1.50
119.60
108.98
A
A
A
OP1
P
OP2
A
A
A
7
7
7
N
1
5.22
0.50
110.60
115.82
A
A
A
C2
N3
C4
A
A
A
7
7
7
N
1
-9.40
0.70
126.80
117.40
A
A
A
N3
C4
C5
A
A
A
7
7
7
N
1
-6.22
0.50
103.90
97.68
A
A
A
C5
N7
C8
A
A
A
7
7
7
N
1
8.33
0.50
113.80
122.13
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
1
-6.31
0.40
105.80
99.49
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
1
2.60
0.40
105.80
108.40
A
A
A
N9
C4
C5
A
A
A
7
7
7
N
1
6.80
0.80
127.40
134.20
A
A
A
N3
C4
N9
A
A
A
7
7
7
N
1
-10.41
1.50
119.60
109.19
A
A
A
OP1
P
OP2
C
C
C
8
8
8
N
1
-3.81
0.40
120.30
116.49
A
A
A
C6
N1
C2
C
C
C
8
8
8
N
1
3.67
0.50
117.40
121.07
A
A
A
C4
C5
C6
C
C
C
8
8
8
N
1
-10.53
1.50
119.60
109.07
A
A
A
OP1
P
OP2
A
A
A
9
9
9
N
1
5.06
0.50
110.60
115.66
A
A
A
C2
N3
C4
A
A
A
9
9
9
N
1
-9.23
0.70
126.80
117.57
A
A
A
N3
C4
C5
A
A
A
9
9
9
N
1
-6.31
0.50
103.90
97.59
A
A
A
C5
N7
C8
A
A
A
9
9
9
N
1
8.08
0.50
113.80
121.88
A
A
A
N7
C8
N9
A
A
A
9
9
9
N
1
-5.96
0.40
105.80
99.84
A
A
A
C8
N9
C4
A
A
A
9
9
9
N
1
6.84
0.80
127.40
134.24
A
A
A
N3
C4
N9
A
A
A
9
9
9
N
1
-10.57
1.50
119.60
109.03
A
A
A
OP1
P
OP2
C
C
C
10
10
10
N
1
4.32
0.70
108.50
112.82
A
A
A
O4'
C1'
N1
C
C
C
10
10
10
N
1
-3.12
0.40
120.30
117.18
A
A
A
C6
N1
C2
C
C
C
10
10
10
N
1
3.65
0.50
117.40
121.05
A
A
A
C4
C5
C6
C
C
C
10
10
10
N
1
-10.59
1.50
119.60
109.01
A
A
A
OP1
P
OP2
C
C
C
11
11
11
N
1
7.01
0.70
108.50
115.51
A
A
A
O4'
C1'
N1
C
C
C
11
11
11
N
1
-3.04
0.40
120.30
117.26
A
A
A
C6
N1
C2
C
C
C
11
11
11
N
1
3.60
0.50
117.40
121.00
A
A
A
C4
C5
C6
C
C
C
11
11
11
N
1
-10.79
1.50
119.60
108.81
A
A
A
OP1
P
OP2
U
U
U
12
12
12
N
1
5.50
0.70
108.50
114.00
A
A
A
O4'
C1'
N1
U
U
U
12
12
12
N
1
5.91
0.60
114.90
120.81
A
A
A
N1
C2
N3
U
U
U
12
12
12
N
1
-5.08
0.70
122.20
117.12
A
A
A
N3
C2
O2
U
U
U
12
12
12
N
1
-3.91
0.60
125.90
121.99
A
A
A
C5
C4
O4
U
U
U
12
12
12
N
1
-10.66
1.50
119.60
108.94
A
A
A
OP1
P
OP2
U
U
U
13
13
13
N
1
5.28
0.60
114.90
120.18
A
A
A
N1
C2
N3
U
U
U
13
13
13
N
1
-4.75
0.70
122.20
117.45
A
A
A
N3
C2
O2
U
U
U
13
13
13
N
1
-4.03
0.60
125.90
121.87
A
A
A
C5
C4
O4
U
U
U
13
13
13
N
1
-10.53
1.50
119.60
109.07
A
A
A
OP1
P
OP2
C
C
C
14
14
14
N
1
6.29
0.70
108.50
114.79
A
A
A
O4'
C1'
N1
C
C
C
14
14
14
N
1
-2.54
0.40
120.30
117.76
A
A
A
C6
N1
C2
C
C
C
14
14
14
N
1
4.35
0.50
117.40
121.75
A
A
A
C4
C5
C6
C
C
C
14
14
14
N
1
-10.70
1.50
119.60
108.90
A
A
A
OP1
P
OP2
G
G
G
15
15
15
N
1
11.36
0.50
111.90
123.26
A
A
A
C2
N3
C4
G
G
G
15
15
15
N
1
-10.65
0.50
128.60
117.95
A
A
A
N3
C4
C5
G
G
G
15
15
15
N
1
3.58
0.50
111.50
115.08
A
A
A
C5
C6
N1
G
G
G
15
15
15
N
1
-7.52
0.50
104.30
96.78
A
A
A
C5
N7
C8
G
G
G
15
15
15
N
1
9.00
0.50
113.10
122.10
A
A
A
N7
C8
N9
G
G
G
15
15
15
N
1
-6.00
0.40
106.40
100.40
A
A
A
C8
N9
C4
G
G
G
15
15
15
N
1
8.36
0.60
126.00
134.36
A
A
A
N3
C4
N9
G
G
G
15
15
15
N
1
-3.78
0.60
130.40
126.62
A
A
A
C6
C5
N7
G
G
G
15
15
15
N
1
-5.84
0.60
128.60
122.76
A
A
A
C5
C6
O6
G
G
G
15
15
15
N
1
-10.45
1.50
119.60
109.15
A
A
A
OP1
P
OP2
G
G
G
16
16
16
N
1
10.98
0.50
111.90
122.88
A
A
A
C2
N3
C4
G
G
G
16
16
16
N
1
-11.44
0.50
128.60
117.16
A
A
A
N3
C4
C5
G
G
G
16
16
16
N
1
3.43
0.50
111.50
114.93
A
A
A
C5
C6
N1
G
G
G
16
16
16
N
1
2.78
0.40
110.80
113.58
A
A
A
C4
C5
N7
G
G
G
16
16
16
N
1
-7.52
0.50
104.30
96.78
A
A
A
C5
N7
C8
G
G
G
16
16
16
N
1
9.81
0.50
113.10
122.91
A
A
A
N7
C8
N9
G
G
G
16
16
16
N
1
-7.57
0.40
106.40
98.83
A
A
A
C8
N9
C4
G
G
G
16
16
16
N
1
9.10
0.60
126.00
135.10
A
A
A
N3
C4
N9
G
G
G
16
16
16
N
1
-4.57
0.60
130.40
125.83
A
A
A
C6
C5
N7
G
G
G
16
16
16
N
1
-4.65
0.60
128.60
123.95
A
A
A
C5
C6
O6
G
G
G
16
16
16
N
1
-10.48
1.50
119.60
109.12
A
A
A
OP1
P
OP2
G
G
G
17
17
17
N
1
11.18
0.50
111.90
123.08
A
A
A
C2
N3
C4
G
G
G
17
17
17
N
1
-11.09
0.50
128.60
117.51
A
A
A
N3
C4
C5
G
G
G
17
17
17
N
1
3.33
0.50
111.50
114.83
A
A
A
C5
C6
N1
G
G
G
17
17
17
N
1
-7.39
0.50
104.30
96.91
A
A
A
C5
N7
C8
G
G
G
17
17
17
N
1
9.52
0.50
113.10
122.62
A
A
A
N7
C8
N9
G
G
G
17
17
17
N
1
-7.42
0.40
106.40
98.98
A
A
A
C8
N9
C4
G
G
G
17
17
17
N
1
2.86
0.40
105.40
108.26
A
A
A
N9
C4
C5
G
G
G
17
17
17
N
1
8.20
0.60
126.00
134.20
A
A
A
N3
C4
N9
G
G
G
17
17
17
N
1
-3.80
0.60
130.40
126.60
A
A
A
C6
C5
N7
G
G
G
17
17
17
N
1
-4.43
0.60
128.60
124.17
A
A
A
C5
C6
O6
G
G
G
17
17
17
N
1
-10.65
1.50
119.60
108.95
A
A
A
OP1
P
OP2
U
U
U
18
18
18
N
1
5.58
0.70
108.50
114.08
A
A
A
O4'
C1'
N1
U
U
U
18
18
18
N
1
5.96
0.60
114.90
120.86
A
A
A
N1
C2
N3
U
U
U
18
18
18
N
1
-6.09
0.70
122.20
116.11
A
A
A
N3
C2
O2
U
U
U
18
18
18
N
1
-10.70
1.50
119.60
108.90
A
A
A
OP1
P
OP2
G
G
G
19
19
19
N
1
11.10
0.50
111.90
123.00
A
A
A
C2
N3
C4
G
G
G
19
19
19
N
1
-11.25
0.50
128.60
117.35
A
A
A
N3
C4
C5
G
G
G
19
19
19
N
1
3.09
0.50
111.50
114.59
A
A
A
C5
C6
N1
G
G
G
19
19
19
N
1
2.59
0.40
110.80
113.39
A
A
A
C4
C5
N7
G
G
G
19
19
19
N
1
-7.06
0.50
104.30
97.24
A
A
A
C5
N7
C8
G
G
G
19
19
19
N
1
9.16
0.50
113.10
122.26
A
A
A
N7
C8
N9
G
G
G
19
19
19
N
1
-7.58
0.40
106.40
98.82
A
A
A
C8
N9
C4
G
G
G
19
19
19
N
1
2.87
0.40
105.40
108.27
A
A
A
N9
C4
C5
G
G
G
19
19
19
N
1
8.37
0.60
126.00
134.37
A
A
A
N3
C4
N9
G
G
G
19
19
19
N
1
-4.24
0.60
130.40
126.16
A
A
A
C6
C5
N7
G
G
G
19
19
19
N
1
-4.34
0.60
128.60
124.26
A
A
A
C5
C6
O6
G
G
G
19
19
19
N
1
-10.64
1.50
119.60
108.96
A
A
A
OP1
P
OP2
A
A
A
20
20
20
N
1
5.13
0.50
110.60
115.73
A
A
A
C2
N3
C4
A
A
A
20
20
20
N
1
-9.30
0.70
126.80
117.50
A
A
A
N3
C4
C5
A
A
A
20
20
20
N
1
-6.27
0.50
103.90
97.63
A
A
A
C5
N7
C8
A
A
A
20
20
20
N
1
8.25
0.50
113.80
122.05
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
1
-6.10
0.40
105.80
99.70
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
1
6.83
0.80
127.40
134.23
A
A
A
N3
C4
N9
A
A
A
20
20
20
N
1
-11.12
1.50
119.60
108.48
A
A
A
OP1
P
OP2
A
A
A
21
21
21
N
1
4.93
0.50
110.60
115.53
A
A
A
C2
N3
C4
A
A
A
21
21
21
N
1
-9.55
0.70
126.80
117.25
A
A
A
N3
C4
C5
A
A
A
21
21
21
N
1
-6.06
0.50
103.90
97.84
A
A
A
C5
N7
C8
A
A
A
21
21
21
N
1
8.01
0.50
113.80
121.81
A
A
A
N7
C8
N9
A
A
A
21
21
21
N
1
-6.11
0.40
105.80
99.69
A
A
A
C8
N9
C4
A
A
A
21
21
21
N
1
7.61
0.80
127.40
135.01
A
A
A
N3
C4
N9
A
A
A
21
21
21
N
1
-10.53
1.50
119.60
109.07
A
A
A
OP1
P
OP2
G
G
G
22
22
22
N
1
11.07
0.50
111.90
122.97
A
A
A
C2
N3
C4
G
G
G
22
22
22
N
1
-11.20
0.50
128.60
117.40
A
A
A
N3
C4
C5
G
G
G
22
22
22
N
1
3.39
0.50
111.50
114.89
A
A
A
C5
C6
N1
G
G
G
22
22
22
N
1
2.52
0.40
110.80
113.32
A
A
A
C4
C5
N7
G
G
G
22
22
22
N
1
-7.01
0.50
104.30
97.29
A
A
A
C5
N7
C8
G
G
G
22
22
22
N
1
8.94
0.50
113.10
122.04
A
A
A
N7
C8
N9
G
G
G
22
22
22
N
1
-7.18
0.40
106.40
99.22
A
A
A
C8
N9
C4
G
G
G
22
22
22
N
1
2.59
0.40
105.40
107.99
A
A
A
N9
C4
C5
G
G
G
22
22
22
N
1
8.49
0.60
126.00
134.49
A
A
A
N3
C4
N9
G
G
G
22
22
22
N
1
-3.91
0.60
130.40
126.49
A
A
A
C6
C5
N7
G
G
G
22
22
22
N
1
-4.44
0.60
128.60
124.16
A
A
A
C5
C6
O6
G
G
G
22
22
22
N
1
-10.48
1.50
119.60
109.12
A
A
A
OP1
P
OP2
U
U
U
23
23
23
N
1
4.59
0.70
108.50
113.09
A
A
A
O4'
C1'
N1
U
U
U
23
23
23
N
1
5.91
0.60
114.90
120.81
A
A
A
N1
C2
N3
U
U
U
23
23
23
N
1
-5.46
0.70
122.20
116.74
A
A
A
N3
C2
O2
U
U
U
23
23
23
N
1
-4.27
0.60
125.90
121.63
A
A
A
C5
C4
O4
U
U
U
23
23
23
N
1
-10.47
1.50
119.60
109.13
A
A
A
OP1
P
OP2
C
C
C
24
24
24
N
1
-3.43
0.40
120.30
116.87
A
A
A
C6
N1
C2
C
C
C
24
24
24
N
1
3.52
0.50
117.40
120.92
A
A
A
C4
C5
C6
C
C
C
24
24
24
N
1
-10.72
1.50
119.60
108.88
A
A
A
OP1
P
OP2
G
G
G
25
25
25
N
1
11.16
0.50
111.90
123.06
A
A
A
C2
N3
C4
G
G
G
25
25
25
N
1
-10.89
0.50
128.60
117.71
A
A
A
N3
C4
C5
G
G
G
25
25
25
N
1
3.45
0.50
111.50
114.95
A
A
A
C5
C6
N1
G
G
G
25
25
25
N
1
-7.12
0.50
104.30
97.18
A
A
A
C5
N7
C8
G
G
G
25
25
25
N
1
8.74
0.50
113.10
121.84
A
A
A
N7
C8
N9
G
G
G
25
25
25
N
1
-7.07
0.40
106.40
99.33
A
A
A
C8
N9
C4
G
G
G
25
25
25
N
1
3.04
0.40
105.40
108.44
A
A
A
N9
C4
C5
G
G
G
25
25
25
N
1
7.84
0.60
126.00
133.84
A
A
A
N3
C4
N9
G
G
G
25
25
25
N
1
-4.35
0.60
128.60
124.25
A
A
A
C5
C6
O6
G
G
G
25
25
25
N
1
-10.63
1.50
119.60
108.97
A
A
A
OP1
P
OP2
C
C
C
26
26
26
N
1
7.05
0.70
108.50
115.55
A
A
A
O4'
C1'
N1
C
C
C
26
26
26
N
1
-2.51
0.40
120.30
117.79
A
A
A
C6
N1
C2
C
C
C
26
26
26
N
1
3.19
0.50
117.40
120.59
A
A
A
C4
C5
C6
C
C
C
26
26
26
N
1
10.26
1.20
119.70
129.96
A
A
A
C3'
O3'
P
C
C
C
26
26
27
Y
1
-10.88
1.50
119.60
108.72
A
A
A
OP1
P
OP2
C
C
C
27
27
27
N
1
7.34
0.70
108.50
115.84
A
A
A
O4'
C1'
N1
C
C
C
27
27
27
N
1
-3.63
0.40
120.30
116.67
A
A
A
C6
N1
C2
C
C
C
27
27
27
N
1
3.81
0.50
117.40
121.21
A
A
A
C4
C5
C6
C
C
C
27
27
27
N
1
A
A
N1
C2
G
G
1
1
0.099
0.008
1.373
1.472
N
1
A
A
N3
C4
G
G
1
1
0.101
0.007
1.350
1.451
N
1
A
A
C4
C5
G
G
1
1
0.061
0.007
1.379
1.440
N
1
A
A
C5
C6
G
G
1
1
0.129
0.010
1.419
1.548
N
1
A
A
N7
C8
G
G
1
1
0.070
0.006
1.305
1.375
N
1
A
A
C2
N2
G
G
1
1
0.065
0.010
1.341
1.406
N
1
A
A
N1
C2
G
G
2
2
0.087
0.008
1.373
1.460
N
1
A
A
N3
C4
G
G
2
2
0.099
0.007
1.350
1.449
N
1
A
A
C4
C5
G
G
2
2
0.059
0.007
1.379
1.438
N
1
A
A
C5
C6
G
G
2
2
0.129
0.010
1.419
1.548
N
1
A
A
N7
C8
G
G
2
2
0.071
0.006
1.305
1.376
N
1
A
A
C4
N4
C
C
3
3
0.070
0.009
1.335
1.405
N
1
A
A
N1
C6
C
C
3
3
0.133
0.006
1.367
1.500
N
1
A
A
C2
N3
C
C
3
3
0.110
0.008
1.353
1.463
N
1
A
A
C4
C5
C
C
3
3
-0.054
0.008
1.425
1.371
N
1
A
A
N1
C2
G
G
4
4
0.099
0.008
1.373
1.472
N
1
A
A
N3
C4
G
G
4
4
0.095
0.007
1.350
1.445
N
1
A
A
C4
C5
G
G
4
4
0.058
0.007
1.379
1.437
N
1
A
A
C5
C6
G
G
4
4
0.130
0.010
1.419
1.549
N
1
A
A
N7
C8
G
G
4
4
0.073
0.006
1.305
1.378
N
1
A
A
N1
C6
U
U
5
5
0.117
0.009
1.375
1.492
N
1
A
A
C4
C5
U
U
5
5
0.112
0.009
1.431
1.543
N
1
A
A
C4
N4
C
C
6
6
0.070
0.009
1.335
1.405
N
1
A
A
N1
C6
C
C
6
6
0.129
0.006
1.367
1.496
N
1
A
A
C2
N3
C
C
6
6
0.111
0.008
1.353
1.464
N
1
A
A
C4
C5
C
C
6
6
-0.054
0.008
1.425
1.371
N
1
A
A
N3
C4
A
A
7
7
0.122
0.006
1.344
1.466
N
1
A
A
C4
C5
A
A
7
7
0.079
0.007
1.383
1.462
N
1
A
A
N7
C8
A
A
7
7
0.072
0.007
1.311
1.383
N
1
A
A
C4
N4
C
C
8
8
0.075
0.009
1.335
1.410
N
1
A
A
N1
C6
C
C
8
8
0.136
0.006
1.367
1.503
N
1
A
A
C2
N3
C
C
8
8
0.109
0.008
1.353
1.462
N
1
A
A
C4
C5
C
C
8
8
-0.056
0.008
1.425
1.369
N
1
A
A
N3
C4
A
A
9
9
0.122
0.006
1.344
1.466
N
1
A
A
C4
C5
A
A
9
9
0.075
0.007
1.383
1.458
N
1
A
A
N7
C8
A
A
9
9
0.068
0.007
1.311
1.379
N
1
A
A
C4
N4
C
C
10
10
0.076
0.009
1.335
1.411
N
1
A
A
N1
C6
C
C
10
10
0.133
0.006
1.367
1.500
N
1
A
A
C2
N3
C
C
10
10
0.113
0.008
1.353
1.466
N
1
A
A
C4
C5
C
C
10
10
-0.054
0.008
1.425
1.371
N
1
A
A
C4
N4
C
C
11
11
0.071
0.009
1.335
1.406
N
1
A
A
N1
C6
C
C
11
11
0.131
0.006
1.367
1.498
N
1
A
A
C2
N3
C
C
11
11
0.108
0.008
1.353
1.461
N
1
A
A
C4
C5
C
C
11
11
-0.053
0.008
1.425
1.372
N
1
A
A
N1
C6
U
U
12
12
0.095
0.009
1.375
1.470
N
1
A
A
C4
C5
U
U
12
12
0.119
0.009
1.431
1.550
N
1
A
A
N1
C6
U
U
13
13
0.097
0.009
1.375
1.472
N
1
A
A
C4
C5
U
U
13
13
0.121
0.009
1.431
1.552
N
1
A
A
C4
N4
C
C
14
14
0.078
0.009
1.335
1.413
N
1
A
A
N1
C6
C
C
14
14
0.106
0.006
1.367
1.473
N
1
A
A
C2
N3
C
C
14
14
0.128
0.008
1.353
1.481
N
1
A
A
C4
C5
C
C
14
14
-0.055
0.008
1.425
1.370
N
1
A
A
N1
C2
G
G
15
15
0.111
0.008
1.373
1.484
N
1
A
A
N3
C4
G
G
15
15
0.091
0.007
1.350
1.441
N
1
A
A
C4
C5
G
G
15
15
0.055
0.007
1.379
1.434
N
1
A
A
C5
C6
G
G
15
15
0.128
0.010
1.419
1.547
N
1
A
A
N7
C8
G
G
15
15
0.070
0.006
1.305
1.375
N
1
A
A
C2
N2
G
G
15
15
0.070
0.010
1.341
1.411
N
1
A
A
N1
C2
G
G
16
16
0.096
0.008
1.373
1.469
N
1
A
A
N3
C4
G
G
16
16
0.101
0.007
1.350
1.451
N
1
A
A
C4
C5
G
G
16
16
0.064
0.007
1.379
1.443
N
1
A
A
C5
C6
G
G
16
16
0.128
0.010
1.419
1.547
N
1
A
A
N7
C8
G
G
16
16
0.065
0.006
1.305
1.370
N
1
A
A
C2
N2
G
G
16
16
0.062
0.010
1.341
1.403
N
1
A
A
N1
C2
G
G
17
17
0.099
0.008
1.373
1.472
N
1
A
A
N3
C4
G
G
17
17
0.096
0.007
1.350
1.446
N
1
A
A
C4
C5
G
G
17
17
0.061
0.007
1.379
1.440
N
1
A
A
C5
C6
G
G
17
17
0.132
0.010
1.419
1.551
N
1
A
A
N7
C8
G
G
17
17
0.071
0.006
1.305
1.376
N
1
A
A
C2
N2
G
G
17
17
0.065
0.010
1.341
1.406
N
1
A
A
N1
C6
U
U
18
18
0.122
0.009
1.375
1.497
N
1
A
A
C4
C5
U
U
18
18
0.118
0.009
1.431
1.549
N
1
A
A
N1
C2
G
G
19
19
0.099
0.008
1.373
1.472
N
1
A
A
N3
C4
G
G
19
19
0.098
0.007
1.350
1.448
N
1
A
A
C4
C5
G
G
19
19
0.062
0.007
1.379
1.441
N
1
A
A
C5
C6
G
G
19
19
0.129
0.010
1.419
1.548
N
1
A
A
N7
C8
G
G
19
19
0.068
0.006
1.305
1.373
N
1
A
A
N3
C4
A
A
20
20
0.121
0.006
1.344
1.465
N
1
A
A
C4
C5
A
A
20
20
0.077
0.007
1.383
1.460
N
1
A
A
N7
C8
A
A
20
20
0.069
0.007
1.311
1.380
N
1
A
A
N3
C4
A
A
21
21
0.126
0.006
1.344
1.470
N
1
A
A
C4
C5
A
A
21
21
0.073
0.007
1.383
1.456
N
1
A
A
N7
C8
A
A
21
21
0.062
0.007
1.311
1.373
N
1
A
A
N1
C2
G
G
22
22
0.092
0.008
1.373
1.465
N
1
A
A
N3
C4
G
G
22
22
0.101
0.007
1.350
1.451
N
1
A
A
C4
C5
G
G
22
22
0.059
0.007
1.379
1.438
N
1
A
A
C5
C6
G
G
22
22
0.129
0.010
1.419
1.548
N
1
A
A
N7
C8
G
G
22
22
0.068
0.006
1.305
1.373
N
1
A
A
N1
C6
U
U
23
23
0.118
0.009
1.375
1.493
N
1
A
A
C4
C5
U
U
23
23
0.117
0.009
1.431
1.548
N
1
A
A
C4
N4
C
C
24
24
0.074
0.009
1.335
1.409
N
1
A
A
N1
C6
C
C
24
24
0.133
0.006
1.367
1.500
N
1
A
A
C2
N3
C
C
24
24
0.116
0.008
1.353
1.469
N
1
A
A
C4
C5
C
C
24
24
-0.056
0.008
1.425
1.369
N
1
A
A
N1
C2
G
G
25
25
0.097
0.008
1.373
1.470
N
1
A
A
N3
C4
G
G
25
25
0.096
0.007
1.350
1.446
N
1
A
A
C4
C5
G
G
25
25
0.058
0.007
1.379
1.437
N
1
A
A
C5
C6
G
G
25
25
0.131
0.010
1.419
1.550
N
1
A
A
N7
C8
G
G
25
25
0.073
0.006
1.305
1.378
N
1
A
A
C4
N4
C
C
26
26
0.066
0.009
1.335
1.401
N
1
A
A
N1
C6
C
C
26
26
0.113
0.006
1.367
1.480
N
1
A
A
C2
N3
C
C
26
26
0.110
0.008
1.353
1.463
N
1
A
A
C4
C5
C
C
26
26
-0.052
0.008
1.425
1.373
N
1
A
A
C4
N4
C
C
27
27
0.073
0.009
1.335
1.408
N
1
A
A
N1
C6
C
C
27
27
0.132
0.006
1.367
1.499
N
1
A
A
C2
N3
C
C
27
27
0.114
0.008
1.353
1.467
N
1
A
A
C4
C5
C
C
27
27
-0.057
0.008
1.425
1.368
N
PAROMOMYCIN/16S RRNA COMPLEX
STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE
1
N
N
2
N
N
3
N
N
4
N
N
covale
1.450
one
A
PA1
101
C
C1
PA1
1_555
A
CYY
102
D
O4
CYY
1_555
covale
1.464
one
A
CYY
102
D
O5
CYY
1_555
B
BDR
1
B
C1
BDR
1_555
covale
1.449
both
B
BDR
1
B
O3
BDR
1_555
B
IDG
2
B
C1
IDG
1_555
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
27
A
N3
C
27
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
27
A
O2
C
27
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
27
A
N4
C
27
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
26
A
N3
C
26
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
26
A
O2
C
26
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
26
A
N4
C
26
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
A
G
25
A
N1
G
25
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
A
G
25
A
O6
G
25
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
A
G
25
A
N2
G
25
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
24
A
N3
C
24
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
24
A
O2
C
24
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
24
A
N4
C
24
1_555
hydrog
U-C MISPAIR
A
U
5
A
N3
U
5
1_555
A
C
24
A
O2
C
24
1_555
hydrog
WATSON-CRICK
A
C
6
A
N3
C
6
1_555
A
G
22
A
N1
G
22
1_555
hydrog
WATSON-CRICK
A
C
6
A
N4
C
6
1_555
A
G
22
A
O6
G
22
1_555
hydrog
WATSON-CRICK
A
C
6
A
O2
C
6
1_555
A
G
22
A
N2
G
22
1_555
hydrog
C-U MISPAIR
A
C
6
A
N4
C
6
1_555
A
U
23
A
O4
U
23
1_555
hydrog
WATSON-CRICK
A
C
8
A
N3
C
8
1_555
A
G
19
A
N1
G
19
1_555
hydrog
WATSON-CRICK
A
C
8
A
N4
C
8
1_555
A
G
19
A
O6
G
19
1_555
hydrog
WATSON-CRICK
A
C
8
A
O2
C
8
1_555
A
G
19
A
N2
G
19
1_555
hydrog
C-A MISPAIR
A
C
8
A
O2
C
8
1_555
A
A
21
A
N6
A
21
1_555
hydrog
WATSON-CRICK
A
A
9
A
N1
A
9
1_555
A
U
18
A
N3
U
18
1_555
hydrog
WATSON-CRICK
A
A
9
A
N6
A
9
1_555
A
U
18
A
O4
U
18
1_555
hydrog
WATSON-CRICK
A
C
10
A
N3
C
10
1_555
A
G
17
A
N1
G
17
1_555
hydrog
WATSON-CRICK
A
C
10
A
N4
C
10
1_555
A
G
17
A
O6
G
17
1_555
hydrog
WATSON-CRICK
A
C
10
A
O2
C
10
1_555
A
G
17
A
N2
G
17
1_555
hydrog
WATSON-CRICK
A
C
11
A
N3
C
11
1_555
A
G
16
A
N1
G
16
1_555
hydrog
WATSON-CRICK
A
C
11
A
N4
C
11
1_555
A
G
16
A
O6
G
16
1_555
hydrog
WATSON-CRICK
A
C
11
A
O2
C
11
1_555
A
G
16
A
N2
G
16
1_555
hydrog
U-G MISPAIR
A
U
12
A
O2
U
12
1_555
A
G
15
A
N1
G
15
1_555
RNA
AMINOGLYCOSIDE, RIBOSOMAL RNA, RNA TRANSCRIPT, ANTIBIOTIC, RIBONUCLEIC ACID, RNA
1PBR
PDB
1
1PBR
1
27
1PBR
1
27
1PBR
A
1
1
27
1
P 1