1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Fourmy, D. Recht, M.I. Blanchard, S. Puglisi, J.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 O5 150.130 beta-D-ribofuranose D-saccharide, beta linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C6 H14 N2 O3 162.187 2-DEOXYSTREPTAMINE non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C6 H14 N2 O4 178.186 2,6-diamino-2,6-dideoxy-beta-L-idopyranose L-saccharide, beta linking C6 H13 N O5 179.171 2-amino-2-deoxy-alpha-D-glucopyranose D-saccharide, alpha linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking US Science SCIEAS 0038 0036-8075 274 1367 1371 10.1126/science.274.5291.1367 8910275 Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic. 1996 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 NTS 1404/1412-1488/1497 8656.185 16S RIBOSOMAL RNA 1 syn polymer 310.301 2,6-diamino-2,6-dideoxy-beta-L-idopyranose-(1-3)-beta-D-ribofuranose 1 man branched 179.171 2-amino-2-deoxy-alpha-D-glucopyranose 1 man non-polymer 162.187 2-DEOXYSTREPTAMINE 1 syn non-polymer no no GGCGUCACACCUUCGGGUGAAGUCGCC GGCGUCACACCUUCGGGUGAAGUCGCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n 19.297 1 19 A 1 A 27 -1.441 A_G1:C27_A 1 21.940 -0.230 0.354 0.211 9.438 1 19 A 2 A 26 -2.840 A_G2:C26_A 2 -1.990 -0.154 -1.290 -0.182 12.964 1 19 A 3 A 25 3.386 A_C3:G25_A 3 -8.924 0.193 -1.357 -0.013 -20.244 1 19 A 4 A 24 4.306 A_G4:C24_A 4 -17.883 -0.257 -1.197 0.078 12.849 1 19 A 6 A 22 -4.339 A_C6:G22_A 5 7.557 0.064 -1.329 -0.037 6.966 1 19 A 8 A 19 -2.410 A_C8:G19_A 6 -19.429 0.171 0.444 0.107 -12.418 1 20 A 9 A 18 -6.316 A_A9:U18_A 7 -26.877 0.235 0.306 0.160 -14.146 1 19 A 10 A 17 -3.519 A_C10:G17_A 8 -17.498 0.041 0.619 0.175 -2.399 1 19 A 11 A 16 -5.820 A_C11:G16_A 9 -11.208 0.135 0.679 0.113 -8.848 2 A 12 A 15 -111.223 A_U12:G15_A 10 -6.883 0.317 1.018 -5.990 2.665 30.221 A A 1 2 25.016 A A 27 26 4.005 12.280 -0.132 -1.474 AA_G1G2:C26C27_AA 1 12.220 -24.895 24.858 -5.630 3.042 3.382 27.273 A A 2 3 3.978 A A 26 25 3.494 1.874 0.380 -1.659 AA_G2C3:G25C26_AA 2 0.708 -1.503 27.200 -4.011 -0.620 3.447 36.891 A A 3 4 32.324 A A 25 24 4.700 19.478 -0.152 -1.121 AA_C3G4:C24G25_AA 3 1.052 -1.746 31.465 -5.339 0.433 6.400 58.869 A A 4 6 0.016 A A 24 22 6.426 0.015 0.402 -2.550 AA_G4C6:G22C24_AA 4 -2.921 2.973 58.803 -2.596 -0.704 3.101 42.701 A A 8 9 16.131 A A 19 18 3.576 11.586 0.454 -1.461 AA_C8A9:U18G19_AA 5 5.003 -6.966 40.876 -3.222 -0.098 3.516 30.513 A A 9 10 -4.046 A A 18 17 3.428 -2.127 0.092 -1.383 AA_A9C10:G17U18_AA 6 0.979 -1.862 30.425 -2.178 0.032 3.134 27.994 A A 10 11 1.344 A A 17 16 3.168 0.650 0.112 -1.375 AA_C10C11:G16G17_AA 7 -0.329 0.680 27.985 -2.991 -0.307 3.536 112.438 A A 11 12 1.304 A A 16 15 3.532 2.168 0.926 -1.054 AA_C11U12:G15G16_AA 8 3.482 -2.095 112.389 -0.661 -0.514 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nmr_software pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Non-polymer description Atomic model Data collection Derived calculations Other Structure summary 1 0 1997-09-17 1 1 2008-03-24 1 2 2011-07-13 1 3 2013-01-16 2 0 2020-07-29 _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_database_status.process_site _pdbx_nmr_software.name _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id PA3 30 n B BDR 1 PA4 31 n B IDG 2 DRibfb b-D-ribofuranose b-D-Ribf Rib b-L-IdopN6N DGlcpNa a-D-glucopyranosamine a-D-GlcpN GlcN Y BNL 1996-09-12 REL oligosaccharide WURCS=2.0/2,2,1/[a222h-1b_1-4][a2121h-1b_1-5_2*N_6*N]/1-2/a3-b1 2 PDB2Glycan 1.1.0 WURCS [][D-1-deoxy-Ribf]{[(3+1)][b-L-IdopN6N]{}} 2 PDB-CARE LINUCS C1 O3 IDG BDR 2 1 2 O1 HO3 sing n n PA1 2-amino-2-deoxy-alpha-D-glucopyranose CYY 2-DEOXYSTREPTAMINE 10MM NA PHOSPHATE 1 6.4 308 K BIOSYM refinement Discover PA1 28 3 PA1 PA1 101 A PA2 29 4 CYY CYY 102 A G 1 n 1 G 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A G 4 n 4 G 4 A U 5 n 5 U 5 A C 6 n 6 C 6 A A 7 n 7 A 7 A C 8 n 8 C 8 A A 9 n 9 A 9 A C 10 n 10 C 10 A C 11 n 11 C 11 A U 12 n 12 U 12 A U 13 n 13 U 13 A C 14 n 14 C 14 A G 15 n 15 G 15 A G 16 n 16 G 16 A G 17 n 17 G 17 A U 18 n 18 U 18 A G 19 n 19 G 19 A A 20 n 20 A 20 A A 21 n 21 A 21 A G 22 n 22 G 22 A U 23 n 23 U 23 A C 24 n 24 C 24 A G 25 n 25 G 25 A C 26 n 26 C 26 A C 27 n 27 C 27 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A G 15 0.073 SIDE CHAIN 1 A G 16 0.081 SIDE CHAIN 1 A G 19 0.051 SIDE CHAIN 1 A A 20 0.080 SIDE CHAIN 1 A G 22 0.090 SIDE CHAIN 1 A U 23 0.059 SIDE CHAIN 1 A C 27 0.125 SIDE CHAIN 1 -10.21 1.50 119.60 109.39 A A A OP1 P OP2 G G G 1 1 1 N 1 11.20 0.50 111.90 123.10 A A A C2 N3 C4 G G G 1 1 1 N 1 -11.23 0.50 128.60 117.37 A A A N3 C4 C5 G G G 1 1 1 N 1 3.37 0.50 111.50 114.87 A A A C5 C6 N1 G G G 1 1 1 N 1 2.62 0.40 110.80 113.42 A A A C4 C5 N7 G G G 1 1 1 N 1 -7.10 0.50 104.30 97.20 A A A C5 N7 C8 G G G 1 1 1 N 1 8.92 0.50 113.10 122.02 A A A N7 C8 N9 G G G 1 1 1 N 1 -7.05 0.40 106.40 99.35 A A A C8 N9 C4 G G G 1 1 1 N 1 2.60 0.40 105.40 108.00 A A A N9 C4 C5 G G G 1 1 1 N 1 8.64 0.60 126.00 134.64 A A A N3 C4 N9 G G G 1 1 1 N 1 -4.08 0.60 130.40 126.32 A A A C6 C5 N7 G G G 1 1 1 N 1 -4.54 0.60 128.60 124.06 A A A C5 C6 O6 G G G 1 1 1 N 1 -10.59 1.50 119.60 109.01 A A A OP1 P OP2 G G G 2 2 2 N 1 10.96 0.50 111.90 122.86 A A A C2 N3 C4 G G G 2 2 2 N 1 -11.07 0.50 128.60 117.53 A A A N3 C4 C5 G G G 2 2 2 N 1 3.36 0.50 111.50 114.86 A A A C5 C6 N1 G G G 2 2 2 N 1 2.57 0.40 110.80 113.37 A A A C4 C5 N7 G G G 2 2 2 N 1 -7.15 0.50 104.30 97.15 A A A C5 N7 C8 G G G 2 2 2 N 1 8.80 0.50 113.10 121.90 A A A N7 C8 N9 G G G 2 2 2 N 1 -6.98 0.40 106.40 99.42 A A A C8 N9 C4 G G G 2 2 2 N 1 2.68 0.40 105.40 108.08 A A A N9 C4 C5 G G G 2 2 2 N 1 8.39 0.60 126.00 134.39 A A A N3 C4 N9 G G G 2 2 2 N 1 -3.79 0.60 130.40 126.61 A A A C6 C5 N7 G G G 2 2 2 N 1 -5.25 0.60 128.60 123.35 A A A C5 C6 O6 G G G 2 2 2 N 1 -10.51 1.50 119.60 109.09 A A A OP1 P OP2 C C C 3 3 3 N 1 -3.25 0.40 120.30 117.05 A A A C6 N1 C2 C C C 3 3 3 N 1 3.56 0.50 117.40 120.96 A A A C4 C5 C6 C C C 3 3 3 N 1 -10.70 1.50 119.60 108.90 A A A OP1 P OP2 G G G 4 4 4 N 1 11.16 0.50 111.90 123.06 A A A C2 N3 C4 G G G 4 4 4 N 1 -10.82 0.50 128.60 117.78 A A A N3 C4 C5 G G G 4 4 4 N 1 3.32 0.50 111.50 114.82 A A A C5 C6 N1 G G G 4 4 4 N 1 2.45 0.40 110.80 113.25 A A A C4 C5 N7 G G G 4 4 4 N 1 -7.21 0.50 104.30 97.09 A A A C5 N7 C8 G G G 4 4 4 N 1 8.75 0.50 113.10 121.85 A A A N7 C8 N9 G G G 4 4 4 N 1 -7.01 0.40 106.40 99.39 A A A C8 N9 C4 G G G 4 4 4 N 1 3.02 0.40 105.40 108.42 A A A N9 C4 C5 G G G 4 4 4 N 1 7.80 0.60 126.00 133.80 A A A N3 C4 N9 G G G 4 4 4 N 1 -3.62 0.60 130.40 126.78 A A A C6 C5 N7 G G G 4 4 4 N 1 -4.35 0.60 128.60 124.25 A A A C5 C6 O6 G G G 4 4 4 N 1 -10.80 1.50 119.60 108.80 A A A OP1 P OP2 U U U 5 5 5 N 1 5.38 0.70 108.50 113.88 A A A O4' C1' N1 U U U 5 5 5 N 1 5.77 0.60 114.90 120.67 A A A N1 C2 N3 U U U 5 5 5 N 1 -3.23 0.50 122.70 119.47 A A A C5 C6 N1 U U U 5 5 5 N 1 -5.42 0.70 122.20 116.78 A A A N3 C2 O2 U U U 5 5 5 N 1 -4.38 0.60 125.90 121.52 A A A C5 C4 O4 U U U 5 5 5 N 1 -10.68 1.50 119.60 108.92 A A A OP1 P OP2 C C C 6 6 6 N 1 5.32 0.70 108.50 113.82 A A A O4' C1' N1 C C C 6 6 6 N 1 -3.12 0.40 120.30 117.18 A A A C6 N1 C2 C C C 6 6 6 N 1 3.57 0.50 117.40 120.97 A A A C4 C5 C6 C C C 6 6 6 N 1 -10.62 1.50 119.60 108.98 A A A OP1 P OP2 A A A 7 7 7 N 1 5.22 0.50 110.60 115.82 A A A C2 N3 C4 A A A 7 7 7 N 1 -9.40 0.70 126.80 117.40 A A A N3 C4 C5 A A A 7 7 7 N 1 -6.22 0.50 103.90 97.68 A A A C5 N7 C8 A A A 7 7 7 N 1 8.33 0.50 113.80 122.13 A A A N7 C8 N9 A A A 7 7 7 N 1 -6.31 0.40 105.80 99.49 A A A C8 N9 C4 A A A 7 7 7 N 1 2.60 0.40 105.80 108.40 A A A N9 C4 C5 A A A 7 7 7 N 1 6.80 0.80 127.40 134.20 A A A N3 C4 N9 A A A 7 7 7 N 1 -10.41 1.50 119.60 109.19 A A A OP1 P OP2 C C C 8 8 8 N 1 -3.81 0.40 120.30 116.49 A A A C6 N1 C2 C C C 8 8 8 N 1 3.67 0.50 117.40 121.07 A A A C4 C5 C6 C C C 8 8 8 N 1 -10.53 1.50 119.60 109.07 A A A OP1 P OP2 A A A 9 9 9 N 1 5.06 0.50 110.60 115.66 A A A C2 N3 C4 A A A 9 9 9 N 1 -9.23 0.70 126.80 117.57 A A A N3 C4 C5 A A A 9 9 9 N 1 -6.31 0.50 103.90 97.59 A A A C5 N7 C8 A A A 9 9 9 N 1 8.08 0.50 113.80 121.88 A A A N7 C8 N9 A A A 9 9 9 N 1 -5.96 0.40 105.80 99.84 A A A C8 N9 C4 A A A 9 9 9 N 1 6.84 0.80 127.40 134.24 A A A N3 C4 N9 A A A 9 9 9 N 1 -10.57 1.50 119.60 109.03 A A A OP1 P OP2 C C C 10 10 10 N 1 4.32 0.70 108.50 112.82 A A A O4' C1' N1 C C C 10 10 10 N 1 -3.12 0.40 120.30 117.18 A A A C6 N1 C2 C C C 10 10 10 N 1 3.65 0.50 117.40 121.05 A A A C4 C5 C6 C C C 10 10 10 N 1 -10.59 1.50 119.60 109.01 A A A OP1 P OP2 C C C 11 11 11 N 1 7.01 0.70 108.50 115.51 A A A O4' C1' N1 C C C 11 11 11 N 1 -3.04 0.40 120.30 117.26 A A A C6 N1 C2 C C C 11 11 11 N 1 3.60 0.50 117.40 121.00 A A A C4 C5 C6 C C C 11 11 11 N 1 -10.79 1.50 119.60 108.81 A A A OP1 P OP2 U U U 12 12 12 N 1 5.50 0.70 108.50 114.00 A A A O4' C1' N1 U U U 12 12 12 N 1 5.91 0.60 114.90 120.81 A A A N1 C2 N3 U U U 12 12 12 N 1 -5.08 0.70 122.20 117.12 A A A N3 C2 O2 U U U 12 12 12 N 1 -3.91 0.60 125.90 121.99 A A A C5 C4 O4 U U U 12 12 12 N 1 -10.66 1.50 119.60 108.94 A A A OP1 P OP2 U U U 13 13 13 N 1 5.28 0.60 114.90 120.18 A A A N1 C2 N3 U U U 13 13 13 N 1 -4.75 0.70 122.20 117.45 A A A N3 C2 O2 U U U 13 13 13 N 1 -4.03 0.60 125.90 121.87 A A A C5 C4 O4 U U U 13 13 13 N 1 -10.53 1.50 119.60 109.07 A A A OP1 P OP2 C C C 14 14 14 N 1 6.29 0.70 108.50 114.79 A A A O4' C1' N1 C C C 14 14 14 N 1 -2.54 0.40 120.30 117.76 A A A C6 N1 C2 C C C 14 14 14 N 1 4.35 0.50 117.40 121.75 A A A C4 C5 C6 C C C 14 14 14 N 1 -10.70 1.50 119.60 108.90 A A A OP1 P OP2 G G G 15 15 15 N 1 11.36 0.50 111.90 123.26 A A A C2 N3 C4 G G G 15 15 15 N 1 -10.65 0.50 128.60 117.95 A A A N3 C4 C5 G G G 15 15 15 N 1 3.58 0.50 111.50 115.08 A A A C5 C6 N1 G G G 15 15 15 N 1 -7.52 0.50 104.30 96.78 A A A C5 N7 C8 G G G 15 15 15 N 1 9.00 0.50 113.10 122.10 A A A N7 C8 N9 G G G 15 15 15 N 1 -6.00 0.40 106.40 100.40 A A A C8 N9 C4 G G G 15 15 15 N 1 8.36 0.60 126.00 134.36 A A A N3 C4 N9 G G G 15 15 15 N 1 -3.78 0.60 130.40 126.62 A A A C6 C5 N7 G G G 15 15 15 N 1 -5.84 0.60 128.60 122.76 A A A C5 C6 O6 G G G 15 15 15 N 1 -10.45 1.50 119.60 109.15 A A A OP1 P OP2 G G G 16 16 16 N 1 10.98 0.50 111.90 122.88 A A A C2 N3 C4 G G G 16 16 16 N 1 -11.44 0.50 128.60 117.16 A A A N3 C4 C5 G G G 16 16 16 N 1 3.43 0.50 111.50 114.93 A A A C5 C6 N1 G G G 16 16 16 N 1 2.78 0.40 110.80 113.58 A A A C4 C5 N7 G G G 16 16 16 N 1 -7.52 0.50 104.30 96.78 A A A C5 N7 C8 G G G 16 16 16 N 1 9.81 0.50 113.10 122.91 A A A N7 C8 N9 G G G 16 16 16 N 1 -7.57 0.40 106.40 98.83 A A A C8 N9 C4 G G G 16 16 16 N 1 9.10 0.60 126.00 135.10 A A A N3 C4 N9 G G G 16 16 16 N 1 -4.57 0.60 130.40 125.83 A A A C6 C5 N7 G G G 16 16 16 N 1 -4.65 0.60 128.60 123.95 A A A C5 C6 O6 G G G 16 16 16 N 1 -10.48 1.50 119.60 109.12 A A A OP1 P OP2 G G G 17 17 17 N 1 11.18 0.50 111.90 123.08 A A A C2 N3 C4 G G G 17 17 17 N 1 -11.09 0.50 128.60 117.51 A A A N3 C4 C5 G G G 17 17 17 N 1 3.33 0.50 111.50 114.83 A A A C5 C6 N1 G G G 17 17 17 N 1 -7.39 0.50 104.30 96.91 A A A C5 N7 C8 G G G 17 17 17 N 1 9.52 0.50 113.10 122.62 A A A N7 C8 N9 G G G 17 17 17 N 1 -7.42 0.40 106.40 98.98 A A A C8 N9 C4 G G G 17 17 17 N 1 2.86 0.40 105.40 108.26 A A A N9 C4 C5 G G G 17 17 17 N 1 8.20 0.60 126.00 134.20 A A A N3 C4 N9 G G G 17 17 17 N 1 -3.80 0.60 130.40 126.60 A A A C6 C5 N7 G G G 17 17 17 N 1 -4.43 0.60 128.60 124.17 A A A C5 C6 O6 G G G 17 17 17 N 1 -10.65 1.50 119.60 108.95 A A A OP1 P OP2 U U U 18 18 18 N 1 5.58 0.70 108.50 114.08 A A A O4' C1' N1 U U U 18 18 18 N 1 5.96 0.60 114.90 120.86 A A A N1 C2 N3 U U U 18 18 18 N 1 -6.09 0.70 122.20 116.11 A A A N3 C2 O2 U U U 18 18 18 N 1 -10.70 1.50 119.60 108.90 A A A OP1 P OP2 G G G 19 19 19 N 1 11.10 0.50 111.90 123.00 A A A C2 N3 C4 G G G 19 19 19 N 1 -11.25 0.50 128.60 117.35 A A A N3 C4 C5 G G G 19 19 19 N 1 3.09 0.50 111.50 114.59 A A A C5 C6 N1 G G G 19 19 19 N 1 2.59 0.40 110.80 113.39 A A A C4 C5 N7 G G G 19 19 19 N 1 -7.06 0.50 104.30 97.24 A A A C5 N7 C8 G G G 19 19 19 N 1 9.16 0.50 113.10 122.26 A A A N7 C8 N9 G G G 19 19 19 N 1 -7.58 0.40 106.40 98.82 A A A C8 N9 C4 G G G 19 19 19 N 1 2.87 0.40 105.40 108.27 A A A N9 C4 C5 G G G 19 19 19 N 1 8.37 0.60 126.00 134.37 A A A N3 C4 N9 G G G 19 19 19 N 1 -4.24 0.60 130.40 126.16 A A A C6 C5 N7 G G G 19 19 19 N 1 -4.34 0.60 128.60 124.26 A A A C5 C6 O6 G G G 19 19 19 N 1 -10.64 1.50 119.60 108.96 A A A OP1 P OP2 A A A 20 20 20 N 1 5.13 0.50 110.60 115.73 A A A C2 N3 C4 A A A 20 20 20 N 1 -9.30 0.70 126.80 117.50 A A A N3 C4 C5 A A A 20 20 20 N 1 -6.27 0.50 103.90 97.63 A A A C5 N7 C8 A A A 20 20 20 N 1 8.25 0.50 113.80 122.05 A A A N7 C8 N9 A A A 20 20 20 N 1 -6.10 0.40 105.80 99.70 A A A C8 N9 C4 A A A 20 20 20 N 1 6.83 0.80 127.40 134.23 A A A N3 C4 N9 A A A 20 20 20 N 1 -11.12 1.50 119.60 108.48 A A A OP1 P OP2 A A A 21 21 21 N 1 4.93 0.50 110.60 115.53 A A A C2 N3 C4 A A A 21 21 21 N 1 -9.55 0.70 126.80 117.25 A A A N3 C4 C5 A A A 21 21 21 N 1 -6.06 0.50 103.90 97.84 A A A C5 N7 C8 A A A 21 21 21 N 1 8.01 0.50 113.80 121.81 A A A N7 C8 N9 A A A 21 21 21 N 1 -6.11 0.40 105.80 99.69 A A A C8 N9 C4 A A A 21 21 21 N 1 7.61 0.80 127.40 135.01 A A A N3 C4 N9 A A A 21 21 21 N 1 -10.53 1.50 119.60 109.07 A A A OP1 P OP2 G G G 22 22 22 N 1 11.07 0.50 111.90 122.97 A A A C2 N3 C4 G G G 22 22 22 N 1 -11.20 0.50 128.60 117.40 A A A N3 C4 C5 G G G 22 22 22 N 1 3.39 0.50 111.50 114.89 A A A C5 C6 N1 G G G 22 22 22 N 1 2.52 0.40 110.80 113.32 A A A C4 C5 N7 G G G 22 22 22 N 1 -7.01 0.50 104.30 97.29 A A A C5 N7 C8 G G G 22 22 22 N 1 8.94 0.50 113.10 122.04 A A A N7 C8 N9 G G G 22 22 22 N 1 -7.18 0.40 106.40 99.22 A A A C8 N9 C4 G G G 22 22 22 N 1 2.59 0.40 105.40 107.99 A A A N9 C4 C5 G G G 22 22 22 N 1 8.49 0.60 126.00 134.49 A A A N3 C4 N9 G G G 22 22 22 N 1 -3.91 0.60 130.40 126.49 A A A C6 C5 N7 G G G 22 22 22 N 1 -4.44 0.60 128.60 124.16 A A A C5 C6 O6 G G G 22 22 22 N 1 -10.48 1.50 119.60 109.12 A A A OP1 P OP2 U U U 23 23 23 N 1 4.59 0.70 108.50 113.09 A A A O4' C1' N1 U U U 23 23 23 N 1 5.91 0.60 114.90 120.81 A A A N1 C2 N3 U U U 23 23 23 N 1 -5.46 0.70 122.20 116.74 A A A N3 C2 O2 U U U 23 23 23 N 1 -4.27 0.60 125.90 121.63 A A A C5 C4 O4 U U U 23 23 23 N 1 -10.47 1.50 119.60 109.13 A A A OP1 P OP2 C C C 24 24 24 N 1 -3.43 0.40 120.30 116.87 A A A C6 N1 C2 C C C 24 24 24 N 1 3.52 0.50 117.40 120.92 A A A C4 C5 C6 C C C 24 24 24 N 1 -10.72 1.50 119.60 108.88 A A A OP1 P OP2 G G G 25 25 25 N 1 11.16 0.50 111.90 123.06 A A A C2 N3 C4 G G G 25 25 25 N 1 -10.89 0.50 128.60 117.71 A A A N3 C4 C5 G G G 25 25 25 N 1 3.45 0.50 111.50 114.95 A A A C5 C6 N1 G G G 25 25 25 N 1 -7.12 0.50 104.30 97.18 A A A C5 N7 C8 G G G 25 25 25 N 1 8.74 0.50 113.10 121.84 A A A N7 C8 N9 G G G 25 25 25 N 1 -7.07 0.40 106.40 99.33 A A A C8 N9 C4 G G G 25 25 25 N 1 3.04 0.40 105.40 108.44 A A A N9 C4 C5 G G G 25 25 25 N 1 7.84 0.60 126.00 133.84 A A A N3 C4 N9 G G G 25 25 25 N 1 -4.35 0.60 128.60 124.25 A A A C5 C6 O6 G G G 25 25 25 N 1 -10.63 1.50 119.60 108.97 A A A OP1 P OP2 C C C 26 26 26 N 1 7.05 0.70 108.50 115.55 A A A O4' C1' N1 C C C 26 26 26 N 1 -2.51 0.40 120.30 117.79 A A A C6 N1 C2 C C C 26 26 26 N 1 3.19 0.50 117.40 120.59 A A A C4 C5 C6 C C C 26 26 26 N 1 10.26 1.20 119.70 129.96 A A A C3' O3' P C C C 26 26 27 Y 1 -10.88 1.50 119.60 108.72 A A A OP1 P OP2 C C C 27 27 27 N 1 7.34 0.70 108.50 115.84 A A A O4' C1' N1 C C C 27 27 27 N 1 -3.63 0.40 120.30 116.67 A A A C6 N1 C2 C C C 27 27 27 N 1 3.81 0.50 117.40 121.21 A A A C4 C5 C6 C C C 27 27 27 N 1 A A N1 C2 G G 1 1 0.099 0.008 1.373 1.472 N 1 A A N3 C4 G G 1 1 0.101 0.007 1.350 1.451 N 1 A A C4 C5 G G 1 1 0.061 0.007 1.379 1.440 N 1 A A C5 C6 G G 1 1 0.129 0.010 1.419 1.548 N 1 A A N7 C8 G G 1 1 0.070 0.006 1.305 1.375 N 1 A A C2 N2 G G 1 1 0.065 0.010 1.341 1.406 N 1 A A N1 C2 G G 2 2 0.087 0.008 1.373 1.460 N 1 A A N3 C4 G G 2 2 0.099 0.007 1.350 1.449 N 1 A A C4 C5 G G 2 2 0.059 0.007 1.379 1.438 N 1 A A C5 C6 G G 2 2 0.129 0.010 1.419 1.548 N 1 A A N7 C8 G G 2 2 0.071 0.006 1.305 1.376 N 1 A A C4 N4 C C 3 3 0.070 0.009 1.335 1.405 N 1 A A N1 C6 C C 3 3 0.133 0.006 1.367 1.500 N 1 A A C2 N3 C C 3 3 0.110 0.008 1.353 1.463 N 1 A A C4 C5 C C 3 3 -0.054 0.008 1.425 1.371 N 1 A A N1 C2 G G 4 4 0.099 0.008 1.373 1.472 N 1 A A N3 C4 G G 4 4 0.095 0.007 1.350 1.445 N 1 A A C4 C5 G G 4 4 0.058 0.007 1.379 1.437 N 1 A A C5 C6 G G 4 4 0.130 0.010 1.419 1.549 N 1 A A N7 C8 G G 4 4 0.073 0.006 1.305 1.378 N 1 A A N1 C6 U U 5 5 0.117 0.009 1.375 1.492 N 1 A A C4 C5 U U 5 5 0.112 0.009 1.431 1.543 N 1 A A C4 N4 C C 6 6 0.070 0.009 1.335 1.405 N 1 A A N1 C6 C C 6 6 0.129 0.006 1.367 1.496 N 1 A A C2 N3 C C 6 6 0.111 0.008 1.353 1.464 N 1 A A C4 C5 C C 6 6 -0.054 0.008 1.425 1.371 N 1 A A N3 C4 A A 7 7 0.122 0.006 1.344 1.466 N 1 A A C4 C5 A A 7 7 0.079 0.007 1.383 1.462 N 1 A A N7 C8 A A 7 7 0.072 0.007 1.311 1.383 N 1 A A C4 N4 C C 8 8 0.075 0.009 1.335 1.410 N 1 A A N1 C6 C C 8 8 0.136 0.006 1.367 1.503 N 1 A A C2 N3 C C 8 8 0.109 0.008 1.353 1.462 N 1 A A C4 C5 C C 8 8 -0.056 0.008 1.425 1.369 N 1 A A N3 C4 A A 9 9 0.122 0.006 1.344 1.466 N 1 A A C4 C5 A A 9 9 0.075 0.007 1.383 1.458 N 1 A A N7 C8 A A 9 9 0.068 0.007 1.311 1.379 N 1 A A C4 N4 C C 10 10 0.076 0.009 1.335 1.411 N 1 A A N1 C6 C C 10 10 0.133 0.006 1.367 1.500 N 1 A A C2 N3 C C 10 10 0.113 0.008 1.353 1.466 N 1 A A C4 C5 C C 10 10 -0.054 0.008 1.425 1.371 N 1 A A C4 N4 C C 11 11 0.071 0.009 1.335 1.406 N 1 A A N1 C6 C C 11 11 0.131 0.006 1.367 1.498 N 1 A A C2 N3 C C 11 11 0.108 0.008 1.353 1.461 N 1 A A C4 C5 C C 11 11 -0.053 0.008 1.425 1.372 N 1 A A N1 C6 U U 12 12 0.095 0.009 1.375 1.470 N 1 A A C4 C5 U U 12 12 0.119 0.009 1.431 1.550 N 1 A A N1 C6 U U 13 13 0.097 0.009 1.375 1.472 N 1 A A C4 C5 U U 13 13 0.121 0.009 1.431 1.552 N 1 A A C4 N4 C C 14 14 0.078 0.009 1.335 1.413 N 1 A A N1 C6 C C 14 14 0.106 0.006 1.367 1.473 N 1 A A C2 N3 C C 14 14 0.128 0.008 1.353 1.481 N 1 A A C4 C5 C C 14 14 -0.055 0.008 1.425 1.370 N 1 A A N1 C2 G G 15 15 0.111 0.008 1.373 1.484 N 1 A A N3 C4 G G 15 15 0.091 0.007 1.350 1.441 N 1 A A C4 C5 G G 15 15 0.055 0.007 1.379 1.434 N 1 A A C5 C6 G G 15 15 0.128 0.010 1.419 1.547 N 1 A A N7 C8 G G 15 15 0.070 0.006 1.305 1.375 N 1 A A C2 N2 G G 15 15 0.070 0.010 1.341 1.411 N 1 A A N1 C2 G G 16 16 0.096 0.008 1.373 1.469 N 1 A A N3 C4 G G 16 16 0.101 0.007 1.350 1.451 N 1 A A C4 C5 G G 16 16 0.064 0.007 1.379 1.443 N 1 A A C5 C6 G G 16 16 0.128 0.010 1.419 1.547 N 1 A A N7 C8 G G 16 16 0.065 0.006 1.305 1.370 N 1 A A C2 N2 G G 16 16 0.062 0.010 1.341 1.403 N 1 A A N1 C2 G G 17 17 0.099 0.008 1.373 1.472 N 1 A A N3 C4 G G 17 17 0.096 0.007 1.350 1.446 N 1 A A C4 C5 G G 17 17 0.061 0.007 1.379 1.440 N 1 A A C5 C6 G G 17 17 0.132 0.010 1.419 1.551 N 1 A A N7 C8 G G 17 17 0.071 0.006 1.305 1.376 N 1 A A C2 N2 G G 17 17 0.065 0.010 1.341 1.406 N 1 A A N1 C6 U U 18 18 0.122 0.009 1.375 1.497 N 1 A A C4 C5 U U 18 18 0.118 0.009 1.431 1.549 N 1 A A N1 C2 G G 19 19 0.099 0.008 1.373 1.472 N 1 A A N3 C4 G G 19 19 0.098 0.007 1.350 1.448 N 1 A A C4 C5 G G 19 19 0.062 0.007 1.379 1.441 N 1 A A C5 C6 G G 19 19 0.129 0.010 1.419 1.548 N 1 A A N7 C8 G G 19 19 0.068 0.006 1.305 1.373 N 1 A A N3 C4 A A 20 20 0.121 0.006 1.344 1.465 N 1 A A C4 C5 A A 20 20 0.077 0.007 1.383 1.460 N 1 A A N7 C8 A A 20 20 0.069 0.007 1.311 1.380 N 1 A A N3 C4 A A 21 21 0.126 0.006 1.344 1.470 N 1 A A C4 C5 A A 21 21 0.073 0.007 1.383 1.456 N 1 A A N7 C8 A A 21 21 0.062 0.007 1.311 1.373 N 1 A A N1 C2 G G 22 22 0.092 0.008 1.373 1.465 N 1 A A N3 C4 G G 22 22 0.101 0.007 1.350 1.451 N 1 A A C4 C5 G G 22 22 0.059 0.007 1.379 1.438 N 1 A A C5 C6 G G 22 22 0.129 0.010 1.419 1.548 N 1 A A N7 C8 G G 22 22 0.068 0.006 1.305 1.373 N 1 A A N1 C6 U U 23 23 0.118 0.009 1.375 1.493 N 1 A A C4 C5 U U 23 23 0.117 0.009 1.431 1.548 N 1 A A C4 N4 C C 24 24 0.074 0.009 1.335 1.409 N 1 A A N1 C6 C C 24 24 0.133 0.006 1.367 1.500 N 1 A A C2 N3 C C 24 24 0.116 0.008 1.353 1.469 N 1 A A C4 C5 C C 24 24 -0.056 0.008 1.425 1.369 N 1 A A N1 C2 G G 25 25 0.097 0.008 1.373 1.470 N 1 A A N3 C4 G G 25 25 0.096 0.007 1.350 1.446 N 1 A A C4 C5 G G 25 25 0.058 0.007 1.379 1.437 N 1 A A C5 C6 G G 25 25 0.131 0.010 1.419 1.550 N 1 A A N7 C8 G G 25 25 0.073 0.006 1.305 1.378 N 1 A A C4 N4 C C 26 26 0.066 0.009 1.335 1.401 N 1 A A N1 C6 C C 26 26 0.113 0.006 1.367 1.480 N 1 A A C2 N3 C C 26 26 0.110 0.008 1.353 1.463 N 1 A A C4 C5 C C 26 26 -0.052 0.008 1.425 1.373 N 1 A A C4 N4 C C 27 27 0.073 0.009 1.335 1.408 N 1 A A N1 C6 C C 27 27 0.132 0.006 1.367 1.499 N 1 A A C2 N3 C C 27 27 0.114 0.008 1.353 1.467 N 1 A A C4 C5 C C 27 27 -0.057 0.008 1.425 1.368 N PAROMOMYCIN/16S RRNA COMPLEX STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE 1 N N 2 N N 3 N N 4 N N covale 1.450 one A PA1 101 C C1 PA1 1_555 A CYY 102 D O4 CYY 1_555 covale 1.464 one A CYY 102 D O5 CYY 1_555 B BDR 1 B C1 BDR 1_555 covale 1.449 both B BDR 1 B O3 BDR 1_555 B IDG 2 B C1 IDG 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 27 A N3 C 27 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 27 A O2 C 27 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 27 A N4 C 27 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 26 A N3 C 26 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 26 A O2 C 26 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 26 A N4 C 26 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 25 A N1 G 25 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 25 A O6 G 25 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 25 A N2 G 25 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 24 A N3 C 24 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 24 A O2 C 24 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 24 A N4 C 24 1_555 hydrog U-C MISPAIR A U 5 A N3 U 5 1_555 A C 24 A O2 C 24 1_555 hydrog WATSON-CRICK A C 6 A N3 C 6 1_555 A G 22 A N1 G 22 1_555 hydrog WATSON-CRICK A C 6 A N4 C 6 1_555 A G 22 A O6 G 22 1_555 hydrog WATSON-CRICK A C 6 A O2 C 6 1_555 A G 22 A N2 G 22 1_555 hydrog C-U MISPAIR A C 6 A N4 C 6 1_555 A U 23 A O4 U 23 1_555 hydrog WATSON-CRICK A C 8 A N3 C 8 1_555 A G 19 A N1 G 19 1_555 hydrog WATSON-CRICK A C 8 A N4 C 8 1_555 A G 19 A O6 G 19 1_555 hydrog WATSON-CRICK A C 8 A O2 C 8 1_555 A G 19 A N2 G 19 1_555 hydrog C-A MISPAIR A C 8 A O2 C 8 1_555 A A 21 A N6 A 21 1_555 hydrog WATSON-CRICK A A 9 A N1 A 9 1_555 A U 18 A N3 U 18 1_555 hydrog WATSON-CRICK A A 9 A N6 A 9 1_555 A U 18 A O4 U 18 1_555 hydrog WATSON-CRICK A C 10 A N3 C 10 1_555 A G 17 A N1 G 17 1_555 hydrog WATSON-CRICK A C 10 A N4 C 10 1_555 A G 17 A O6 G 17 1_555 hydrog WATSON-CRICK A C 10 A O2 C 10 1_555 A G 17 A N2 G 17 1_555 hydrog WATSON-CRICK A C 11 A N3 C 11 1_555 A G 16 A N1 G 16 1_555 hydrog WATSON-CRICK A C 11 A N4 C 11 1_555 A G 16 A O6 G 16 1_555 hydrog WATSON-CRICK A C 11 A O2 C 11 1_555 A G 16 A N2 G 16 1_555 hydrog U-G MISPAIR A U 12 A O2 U 12 1_555 A G 15 A N1 G 15 1_555 RNA AMINOGLYCOSIDE, RIBOSOMAL RNA, RNA TRANSCRIPT, ANTIBIOTIC, RIBONUCLEIC ACID, RNA 1PBR PDB 1 1PBR 1 27 1PBR 1 27 1PBR A 1 1 27 1 P 1