1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Sidote, D.J.
Hoffman, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
42
13541
13550
10.1021/bi030170z
14622001
NMR Structure of an Archaeal Homologue of Ribonuclease P Protein Rpp29
2003
10.2210/pdb1pc0/pdb
pdb_00001pc0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
6900.119
Hypothetical protein AF1917
residue 17-77
1
man
polymer
no
no
GLMVEVVESPNHSEVGIKGEVVDETQNTLKIMTEKGLKVVAKRGRTFRVWYKGKIMRIKGD
GLMVEVVESPNHSEVGIKGEVVDETQNTLKIMTEKGLKVVAKRGRTFRVWYKGKIMRIKGD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Archaeoglobus
Escherichia
sample
AF1917
2234
Archaeoglobus fulgidus
562
Escherichia coli
plasmid
pMAL-c2t
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2003-12-09
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2003-05-15
REL
REL
This structure was determined using standard 2D homonuclear and 3D heteronuclear techniques.
structures with the lowest energy
200
10
3D_15N-separated_NOESY
3D_13C-separated_NOESY
3D_15N-separated_NOESY
2D NOESY
2D NOESY
2D NOESY
100mM
5.8
ambient
303
K
100mM
3.0
ambient
303
K
the structures are based on a total of 651 restraints, 554 are NOE-derived
distance constraints, 70 dihedral angle restraints,27 distance restraints
from hydrogen bonds.
distance geometry
simulated annealing
1
lowest energy
1.8 mM Rpp29 U-15N;10mM postassium phosphate pH 5.8
100mM sodium Chloride
10mM sodium azide
90% H2O/10% D2O
1.8 mM Rpp29 U-15N;10mM postassium phosphate pH 3.0
100mM sodium Chloride
10mM sodium azide
90% H2O/10% D2O
1.8 mM Rpp29 U-15N; U-13C; 10mM postassium phosphate pH 5.8
100mM sodium Chloride
10mM sodium azide
90% H2O/10% D2O
1.8 mM Rpp29; 10mM postassium phosphate pH 5.8
100mM sodium Chloride
10mM sodium azide
90% H2O/10% D2O
1.8 mM Rpp29; 10mM postassium phosphate pH 3.0
100mM sodium Chloride
10mM sodium azide
90% H2O/10% D2O
1.8 mM Rpp29; 10mM postassium phosphate pH 5.8
100mM sodium Chloride
10mM sodium azide
100% D2O
Brunger, A. T.
refinement
CNS
1.1
500
Varian
INOVA
GLY
17
n
1
GLY
17
A
LEU
18
n
2
LEU
18
A
MET
19
n
3
MET
19
A
VAL
20
n
4
VAL
20
A
GLU
21
n
5
GLU
21
A
VAL
22
n
6
VAL
22
A
VAL
23
n
7
VAL
23
A
GLU
24
n
8
GLU
24
A
SER
25
n
9
SER
25
A
PRO
26
n
10
PRO
26
A
ASN
27
n
11
ASN
27
A
HIS
28
n
12
HIS
28
A
SER
29
n
13
SER
29
A
GLU
30
n
14
GLU
30
A
VAL
31
n
15
VAL
31
A
GLY
32
n
16
GLY
32
A
ILE
33
n
17
ILE
33
A
LYS
34
n
18
LYS
34
A
GLY
35
n
19
GLY
35
A
GLU
36
n
20
GLU
36
A
VAL
37
n
21
VAL
37
A
VAL
38
n
22
VAL
38
A
ASP
39
n
23
ASP
39
A
GLU
40
n
24
GLU
40
A
THR
41
n
25
THR
41
A
GLN
42
n
26
GLN
42
A
ASN
43
n
27
ASN
43
A
THR
44
n
28
THR
44
A
LEU
45
n
29
LEU
45
A
LYS
46
n
30
LYS
46
A
ILE
47
n
31
ILE
47
A
MET
48
n
32
MET
48
A
THR
49
n
33
THR
49
A
GLU
50
n
34
GLU
50
A
LYS
51
n
35
LYS
51
A
GLY
52
n
36
GLY
52
A
LEU
53
n
37
LEU
53
A
LYS
54
n
38
LYS
54
A
VAL
55
n
39
VAL
55
A
VAL
56
n
40
VAL
56
A
ALA
57
n
41
ALA
57
A
LYS
58
n
42
LYS
58
A
ARG
59
n
43
ARG
59
A
GLY
60
n
44
GLY
60
A
ARG
61
n
45
ARG
61
A
THR
62
n
46
THR
62
A
PHE
63
n
47
PHE
63
A
ARG
64
n
48
ARG
64
A
VAL
65
n
49
VAL
65
A
TRP
66
n
50
TRP
66
A
TYR
67
n
51
TYR
67
A
LYS
68
n
52
LYS
68
A
GLY
69
n
53
GLY
69
A
LYS
70
n
54
LYS
70
A
ILE
71
n
55
ILE
71
A
MET
72
n
56
MET
72
A
ARG
73
n
57
ARG
73
A
ILE
74
n
58
ILE
74
A
LYS
75
n
59
LYS
75
A
GLY
76
n
60
GLY
76
A
ASP
77
n
61
ASP
77
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
56
A
O
VAL
40
A
N
LEU
45
A
N
LEU
29
A
O
LYS
46
A
O
LYS
30
A
N
VAL
38
A
N
VAL
22
A
O
GLY
35
A
O
GLY
19
A
N
VAL
20
A
N
VAL
4
A
N
GLU
21
A
N
GLU
5
A
O
ARG
64
A
O
ARG
48
A
N
PHE
63
A
N
PHE
47
A
O
ILE
74
A
O
ILE
58
1
A
SER
25
89.90
133.09
1
A
PRO
26
-54.37
82.43
1
A
ASN
27
177.77
157.39
1
A
SER
29
-177.43
55.03
1
A
ASP
39
71.16
73.84
1
A
ASN
43
-149.60
-91.80
1
A
THR
49
-103.40
-88.75
1
A
GLU
50
-141.16
-53.01
1
A
LYS
58
-36.59
-33.44
1
A
ARG
61
54.41
-175.16
2
A
SER
25
69.28
99.59
2
A
ASN
27
-36.78
151.56
2
A
SER
29
-94.60
53.45
2
A
GLU
30
-42.73
171.19
2
A
THR
41
-149.86
40.95
2
A
ASN
43
-171.56
-66.26
2
A
THR
49
-107.09
-88.22
2
A
GLU
50
-138.63
-55.61
2
A
LYS
58
64.23
65.44
2
A
ARG
59
65.01
177.43
2
A
ARG
61
-58.68
-163.34
2
A
LYS
68
-69.44
66.42
3
A
SER
25
66.85
103.63
3
A
ASN
27
-37.45
156.51
3
A
GLU
30
62.04
150.03
3
A
GLU
40
-43.17
-77.01
3
A
GLN
42
60.43
63.72
3
A
ASN
43
179.46
-61.77
3
A
THR
49
-131.23
-92.72
3
A
GLU
50
-90.39
-91.28
3
A
LYS
68
-68.33
66.58
4
A
SER
25
75.84
107.41
4
A
ASN
27
-40.00
159.89
4
A
GLU
30
45.60
-171.77
4
A
THR
41
-162.16
50.03
4
A
ASN
43
-175.76
-74.48
4
A
THR
49
-109.27
-89.22
4
A
GLU
50
-130.43
-59.86
4
A
LYS
51
-59.27
-8.01
4
A
LYS
58
-39.36
-31.45
4
A
ARG
61
56.17
-172.02
5
A
SER
25
61.87
120.34
5
A
ASN
27
-46.28
168.96
5
A
GLU
30
61.11
171.80
5
A
THR
41
-163.70
45.35
5
A
ASN
43
-172.10
-65.31
5
A
THR
49
-134.77
-114.62
5
A
GLU
50
-64.19
-89.90
5
A
LYS
58
25.24
39.69
5
A
ARG
59
178.46
-168.26
5
A
ARG
61
58.99
-175.36
6
A
SER
25
88.55
-16.78
6
A
HIS
28
-157.70
-67.11
6
A
SER
29
-96.63
-136.74
6
A
GLU
30
-162.58
104.33
6
A
THR
41
-150.07
44.26
6
A
GLN
42
60.35
64.05
6
A
ASN
43
-179.05
-82.59
6
A
THR
49
-97.97
-68.10
6
A
GLU
50
-174.83
-42.51
6
A
LYS
58
-59.12
68.84
6
A
ARG
61
150.86
163.08
7
A
SER
25
61.70
114.48
7
A
ASN
27
-43.23
161.67
7
A
GLU
30
62.00
152.38
7
A
GLU
40
-58.70
91.70
7
A
ASN
43
-165.50
-76.05
7
A
THR
49
-132.21
-92.94
7
A
GLU
50
-89.40
-93.89
7
A
LYS
51
-38.53
-30.52
7
A
LYS
58
58.46
111.47
7
A
ARG
59
53.48
174.94
7
A
ARG
61
170.12
126.27
8
A
SER
25
34.50
41.13
8
A
SER
29
-125.18
-102.25
8
A
GLU
30
166.86
88.64
8
A
GLU
40
-56.15
95.89
8
A
ASN
43
-166.29
-80.12
8
A
THR
49
-135.18
-104.02
8
A
GLU
50
-79.71
-85.60
8
A
LYS
58
62.20
75.70
8
A
ARG
59
61.42
-179.02
8
A
ARG
61
68.33
-172.98
9
A
SER
25
64.36
104.53
9
A
ASN
27
-38.76
157.99
9
A
GLU
30
62.58
149.22
9
A
ASP
39
72.16
74.73
9
A
GLN
42
-99.80
-78.25
9
A
ASN
43
-137.08
-106.03
9
A
THR
49
-112.25
-90.87
9
A
GLU
50
-129.57
-58.34
9
A
LYS
58
-68.79
67.70
9
A
ARG
59
172.50
72.68
9
A
ARG
61
58.37
-177.39
9
A
LYS
70
179.80
-175.35
10
A
SER
25
54.57
102.58
10
A
ASN
27
-35.16
155.14
10
A
SER
29
-113.43
66.32
10
A
GLU
30
-37.56
147.25
10
A
GLU
40
-57.77
99.43
10
A
ASN
43
-166.64
-79.33
10
A
THR
49
-106.05
-93.64
10
A
GLU
50
-132.88
-58.35
10
A
LYS
58
73.57
-68.65
10
A
ARG
61
63.89
-175.80
NMR Structure of the Archaeal Homologue of RNase P Protein Rpp29
1
N
N
RNA BINDING PROTEIN
sandwich, beta-sheet, RNA BINDING PROTEIN
RNP1_ARCFU
UNP
1
17
O28362
GLMVEVVESPNHSEVGIKGEVVDETQNTLKIMTEKGLKVVAKRGRTFRVWYKGKIMRIKGD
17
77
1PC0
17
77
O28362
A
1
1
61
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
53
A
LEU
37
A
VAL
56
A
VAL
40
A
LEU
45
A
LEU
29
A
MET
48
A
MET
32
A
VAL
31
A
VAL
15
A
VAL
38
A
VAL
22
A
MET
19
A
MET
3
A
GLU
24
A
GLU
8
A
THR
62
A
THR
46
A
TRP
66
A
TRP
50
A
ILE
71
A
ILE
55
A
LYS
75
A
LYS
59