.011869
.006852
.000000
.000000
.013705
.000000
.000000
.000000
.006266
.00000
.00000
.00000
Wang, J.
Xu, X.
Grison, C.
Petek, S.
Coutrot, P.
Birck, M.
Woodard, R.W.
Gatti, D.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
84.254
84.254
159.599
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H9 O6 P
184.084
2-(PHOSPHONOOXY)BUTANOIC ACID
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
O
N
252
N
C
N
253
N
O
N
254
R
C
N
255
N
O
N
256
N
P
N
257
N
O
N
258
N
O
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
P
N
295
N
O
N
296
N
O
N
297
N
O
N
298
N
O
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
O
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
R
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
N
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
Y
267
N
doub
Y
268
N
sing
Y
269
N
sing
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
SZ
DRUG DES.DISCOVERY
DDDIEV
2080
1055-9612
18
91
99
14675946
Structure-Based Design of Novel Inhibitors of 3-Deoxy-D-manno-octulosonate 8-Phosphate Synthase.
2003
10.2210/pdb1pck/pdb
pdb_00001pck
1.000000
.000000
.000000
.000000
1.000000
.000000
.000000
.000000
1.000000
.00000
.00000
.00000
100
1
Osmic High-Flux confocal
IMAGE PLATE
2002-01-22
RIGAKU RAXIS IV
Osmic confocal
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
29774.406
2-dehydro-3-deoxyphosphooctonate aldolase
4.1.2.16
2
man
polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
112.411
CADMIUM ION
2
syn
non-polymer
184.084
2-(PHOSPHONOOXY)BUTANOIC ACID
2
syn
non-polymer
18.015
water
281
nat
water
Phospho-2- dehydro-3-deoxyoctonate aldolase, 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase, KDO-8-phosphate synthetase, KDO 8-P synthase
no
no
MEKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITT
DIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGY
NNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPL
SQLEGIIEAILEIREVASKYYETIPVK
MEKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITT
DIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGY
NNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPL
SQLEGIIEAILEIREVASKYYETIPVK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aquifex
Escherichia
Escherichia coli
sample
KDSA OR AQ_085
63363
Aquifex aeolicus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
pAakdsA
1
2.75
55.19
VAPOR DIFFUSION, HANGING DROP
4.8
PEG 4000, sodium acetate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 281K
281
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-02-17
1
1
2008-04-29
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Aquifex aeolicus KDO8PS in complex with PEP
RCSB
Y
RCSB
2003-05-16
REL
REL
PO4
PHOSPHATE ION
CD
CADMIUM ION
PEZ
2-(PHOSPHONOOXY)BUTANOIC ACID
HOH
water
1FWN
PDB
experimental model
PO4
1269
2
PO4
PO4
1269
A
CD2
1270
3
CD
CD
1270
A
PEZ
1268
4
PEZ
PEZ
1268
A
PO4
2269
2
PO4
PO4
2269
B
CD2
2270
3
CD
CD
2270
B
PEZ
2268
4
PEZ
PEZ
2268
B
HOH
1
5
HOH
HOH
1
A
HOH
2
5
HOH
HOH
2
A
HOH
4
5
HOH
HOH
4
A
HOH
6
5
HOH
HOH
6
A
HOH
9
5
HOH
HOH
9
A
HOH
11
5
HOH
HOH
11
A
HOH
12
5
HOH
HOH
12
A
HOH
14
5
HOH
HOH
14
A
HOH
15
5
HOH
HOH
15
A
HOH
17
5
HOH
HOH
17
A
HOH
18
5
HOH
HOH
18
A
HOH
19
5
HOH
HOH
19
A
HOH
20
5
HOH
HOH
20
A
HOH
22
5
HOH
HOH
22
A
HOH
23
5
HOH
HOH
23
A
HOH
25
5
HOH
HOH
25
A
HOH
28
5
HOH
HOH
28
A
HOH
29
5
HOH
HOH
29
A
HOH
31
5
HOH
HOH
31
A
HOH
32
5
HOH
HOH
32
A
HOH
33
5
HOH
HOH
33
A
HOH
34
5
HOH
HOH
34
A
HOH
36
5
HOH
HOH
36
A
HOH
37
5
HOH
HOH
37
A
HOH
39
5
HOH
HOH
39
A
HOH
41
5
HOH
HOH
41
A
HOH
42
5
HOH
HOH
42
A
HOH
44
5
HOH
HOH
44
A
HOH
45
5
HOH
HOH
45
A
HOH
46
5
HOH
HOH
46
A
HOH
47
5
HOH
HOH
47
A
HOH
48
5
HOH
HOH
48
A
HOH
52
5
HOH
HOH
52
A
HOH
53
5
HOH
HOH
53
A
HOH
54
5
HOH
HOH
54
A
HOH
56
5
HOH
HOH
56
A
HOH
57
5
HOH
HOH
57
A
HOH
59
5
HOH
HOH
59
A
HOH
60
5
HOH
HOH
60
A
HOH
62
5
HOH
HOH
62
A
HOH
63
5
HOH
HOH
63
A
HOH
65
5
HOH
HOH
65
A
HOH
67
5
HOH
HOH
67
A
HOH
68
5
HOH
HOH
68
A
HOH
69
5
HOH
HOH
69
A
HOH
72
5
HOH
HOH
72
A
HOH
75
5
HOH
HOH
75
A
HOH
76
5
HOH
HOH
76
A
HOH
79
5
HOH
HOH
79
A
HOH
81
5
HOH
HOH
81
A
HOH
86
5
HOH
HOH
86
A
HOH
87
5
HOH
HOH
87
A
HOH
88
5
HOH
HOH
88
A
HOH
90
5
HOH
HOH
90
A
HOH
91
5
HOH
HOH
91
A
HOH
93
5
HOH
HOH
93
A
HOH
94
5
HOH
HOH
94
A
HOH
96
5
HOH
HOH
96
A
HOH
98
5
HOH
HOH
98
A
HOH
101
5
HOH
HOH
101
A
HOH
102
5
HOH
HOH
102
A
HOH
105
5
HOH
HOH
105
A
HOH
106
5
HOH
HOH
106
A
HOH
110
5
HOH
HOH
110
A
HOH
111
5
HOH
HOH
111
A
HOH
112
5
HOH
HOH
112
A
HOH
114
5
HOH
HOH
114
A
HOH
118
5
HOH
HOH
118
A
HOH
119
5
HOH
HOH
119
A
HOH
122
5
HOH
HOH
122
A
HOH
124
5
HOH
HOH
124
A
HOH
125
5
HOH
HOH
125
A
HOH
126
5
HOH
HOH
126
A
HOH
130
5
HOH
HOH
130
A
HOH
131
5
HOH
HOH
131
A
HOH
133
5
HOH
HOH
133
A
HOH
134
5
HOH
HOH
134
A
HOH
140
5
HOH
HOH
140
A
HOH
141
5
HOH
HOH
141
A
HOH
144
5
HOH
HOH
144
A
HOH
145
5
HOH
HOH
145
A
HOH
150
5
HOH
HOH
150
A
HOH
153
5
HOH
HOH
153
A
HOH
154
5
HOH
HOH
154
A
HOH
155
5
HOH
HOH
155
A
HOH
159
5
HOH
HOH
159
A
HOH
160
5
HOH
HOH
160
A
HOH
161
5
HOH
HOH
161
A
HOH
162
5
HOH
HOH
162
A
HOH
169
5
HOH
HOH
169
A
HOH
171
5
HOH
HOH
171
A
HOH
172
5
HOH
HOH
172
A
HOH
173
5
HOH
HOH
173
A
HOH
174
5
HOH
HOH
174
A
HOH
175
5
HOH
HOH
175
A
HOH
177
5
HOH
HOH
177
A
HOH
178
5
HOH
HOH
178
A
HOH
179
5
HOH
HOH
179
A
HOH
182
5
HOH
HOH
182
A
HOH
183
5
HOH
HOH
183
A
HOH
184
5
HOH
HOH
184
A
HOH
185
5
HOH
HOH
185
A
HOH
186
5
HOH
HOH
186
A
HOH
187
5
HOH
HOH
187
A
HOH
189
5
HOH
HOH
189
A
HOH
192
5
HOH
HOH
192
A
HOH
193
5
HOH
HOH
193
A
HOH
197
5
HOH
HOH
197
A
HOH
198
5
HOH
HOH
198
A
HOH
200
5
HOH
HOH
200
A
HOH
201
5
HOH
HOH
201
A
HOH
202
5
HOH
HOH
202
A
HOH
204
5
HOH
HOH
204
A
HOH
205
5
HOH
HOH
205
A
HOH
209
5
HOH
HOH
209
A
HOH
210
5
HOH
HOH
210
A
HOH
211
5
HOH
HOH
211
A
HOH
212
5
HOH
HOH
212
A
HOH
213
5
HOH
HOH
213
A
HOH
214
5
HOH
HOH
214
A
HOH
217
5
HOH
HOH
217
A
HOH
218
5
HOH
HOH
218
A
HOH
220
5
HOH
HOH
220
A
HOH
221
5
HOH
HOH
221
A
HOH
222
5
HOH
HOH
222
A
HOH
223
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
228
5
HOH
HOH
228
A
HOH
229
5
HOH
HOH
229
A
HOH
230
5
HOH
HOH
230
A
HOH
231
5
HOH
HOH
231
A
HOH
232
5
HOH
HOH
232
A
HOH
233
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
236
5
HOH
HOH
236
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
243
5
HOH
HOH
243
A
HOH
246
5
HOH
HOH
246
A
HOH
247
5
HOH
HOH
247
A
HOH
252
5
HOH
HOH
252
A
HOH
254
5
HOH
HOH
254
A
HOH
256
5
HOH
HOH
256
A
HOH
263
5
HOH
HOH
263
A
HOH
266
5
HOH
HOH
266
A
HOH
267
5
HOH
HOH
267
A
HOH
269
5
HOH
HOH
269
A
HOH
271
5
HOH
HOH
271
A
HOH
273
5
HOH
HOH
273
A
HOH
274
5
HOH
HOH
274
A
HOH
276
5
HOH
HOH
276
A
HOH
277
5
HOH
HOH
277
A
HOH
279
5
HOH
HOH
279
A
HOH
280
5
HOH
HOH
280
A
HOH
284
5
HOH
HOH
284
A
HOH
285
5
HOH
HOH
285
A
HOH
3
5
HOH
HOH
3
B
HOH
5
5
HOH
HOH
5
B
HOH
7
5
HOH
HOH
7
B
HOH
8
5
HOH
HOH
8
B
HOH
10
5
HOH
HOH
10
B
HOH
13
5
HOH
HOH
13
B
HOH
16
5
HOH
HOH
16
B
HOH
21
5
HOH
HOH
21
B
HOH
24
5
HOH
HOH
24
B
HOH
26
5
HOH
HOH
26
B
HOH
27
5
HOH
HOH
27
B
HOH
30
5
HOH
HOH
30
B
HOH
35
5
HOH
HOH
35
B
HOH
38
5
HOH
HOH
38
B
HOH
40
5
HOH
HOH
40
B
HOH
43
5
HOH
HOH
43
B
HOH
49
5
HOH
HOH
49
B
HOH
50
5
HOH
HOH
50
B
HOH
51
5
HOH
HOH
51
B
HOH
55
5
HOH
HOH
55
B
HOH
58
5
HOH
HOH
58
B
HOH
61
5
HOH
HOH
61
B
HOH
64
5
HOH
HOH
64
B
HOH
66
5
HOH
HOH
66
B
HOH
70
5
HOH
HOH
70
B
HOH
71
5
HOH
HOH
71
B
HOH
73
5
HOH
HOH
73
B
HOH
74
5
HOH
HOH
74
B
HOH
77
5
HOH
HOH
77
B
HOH
78
5
HOH
HOH
78
B
HOH
80
5
HOH
HOH
80
B
HOH
82
5
HOH
HOH
82
B
HOH
83
5
HOH
HOH
83
B
HOH
84
5
HOH
HOH
84
B
HOH
85
5
HOH
HOH
85
B
HOH
89
5
HOH
HOH
89
B
HOH
92
5
HOH
HOH
92
B
HOH
95
5
HOH
HOH
95
B
HOH
97
5
HOH
HOH
97
B
HOH
99
5
HOH
HOH
99
B
HOH
100
5
HOH
HOH
100
B
HOH
103
5
HOH
HOH
103
B
HOH
104
5
HOH
HOH
104
B
HOH
107
5
HOH
HOH
107
B
HOH
108
5
HOH
HOH
108
B
HOH
109
5
HOH
HOH
109
B
HOH
113
5
HOH
HOH
113
B
HOH
115
5
HOH
HOH
115
B
HOH
116
5
HOH
HOH
116
B
HOH
117
5
HOH
HOH
117
B
HOH
120
5
HOH
HOH
120
B
HOH
121
5
HOH
HOH
121
B
HOH
123
5
HOH
HOH
123
B
HOH
127
5
HOH
HOH
127
B
HOH
128
5
HOH
HOH
128
B
HOH
129
5
HOH
HOH
129
B
HOH
132
5
HOH
HOH
132
B
HOH
135
5
HOH
HOH
135
B
HOH
136
5
HOH
HOH
136
B
HOH
137
5
HOH
HOH
137
B
HOH
138
5
HOH
HOH
138
B
HOH
139
5
HOH
HOH
139
B
HOH
142
5
HOH
HOH
142
B
HOH
143
5
HOH
HOH
143
B
HOH
146
5
HOH
HOH
146
B
HOH
147
5
HOH
HOH
147
B
HOH
148
5
HOH
HOH
148
B
HOH
149
5
HOH
HOH
149
B
HOH
151
5
HOH
HOH
151
B
HOH
152
5
HOH
HOH
152
B
HOH
156
5
HOH
HOH
156
B
HOH
157
5
HOH
HOH
157
B
HOH
158
5
HOH
HOH
158
B
HOH
163
5
HOH
HOH
163
B
HOH
164
5
HOH
HOH
164
B
HOH
165
5
HOH
HOH
165
B
HOH
166
5
HOH
HOH
166
B
HOH
167
5
HOH
HOH
167
B
HOH
168
5
HOH
HOH
168
B
HOH
170
5
HOH
HOH
170
B
HOH
176
5
HOH
HOH
176
B
HOH
180
5
HOH
HOH
180
B
HOH
181
5
HOH
HOH
181
B
HOH
188
5
HOH
HOH
188
B
HOH
190
5
HOH
HOH
190
B
HOH
191
5
HOH
HOH
191
B
HOH
194
5
HOH
HOH
194
B
HOH
195
5
HOH
HOH
195
B
HOH
196
5
HOH
HOH
196
B
HOH
199
5
HOH
HOH
199
B
HOH
203
5
HOH
HOH
203
B
HOH
206
5
HOH
HOH
206
B
HOH
207
5
HOH
HOH
207
B
HOH
208
5
HOH
HOH
208
B
HOH
215
5
HOH
HOH
215
B
HOH
216
5
HOH
HOH
216
B
HOH
219
5
HOH
HOH
219
B
HOH
225
5
HOH
HOH
225
B
HOH
226
5
HOH
HOH
226
B
HOH
227
5
HOH
HOH
227
B
HOH
235
5
HOH
HOH
235
B
HOH
240
5
HOH
HOH
240
B
HOH
241
5
HOH
HOH
241
B
HOH
242
5
HOH
HOH
242
B
HOH
245
5
HOH
HOH
245
B
HOH
248
5
HOH
HOH
248
B
HOH
249
5
HOH
HOH
249
B
HOH
250
5
HOH
HOH
250
B
HOH
251
5
HOH
HOH
251
B
HOH
253
5
HOH
HOH
253
B
HOH
255
5
HOH
HOH
255
B
HOH
257
5
HOH
HOH
257
B
HOH
258
5
HOH
HOH
258
B
HOH
259
5
HOH
HOH
259
B
HOH
260
5
HOH
HOH
260
B
HOH
261
5
HOH
HOH
261
B
HOH
262
5
HOH
HOH
262
B
HOH
264
5
HOH
HOH
264
B
HOH
265
5
HOH
HOH
265
B
HOH
270
5
HOH
HOH
270
B
HOH
272
5
HOH
HOH
272
B
HOH
278
5
HOH
HOH
278
B
HOH
282
5
HOH
HOH
282
B
HOH
283
5
HOH
HOH
283
B
n
1
1001
A
GLU
1002
n
2
GLU
1002
A
LYS
1003
n
3
LYS
1003
A
PHE
1004
n
4
PHE
1004
A
LEU
1005
n
5
LEU
1005
A
VAL
1006
n
6
VAL
1006
A
ILE
1007
n
7
ILE
1007
A
ALA
1008
n
8
ALA
1008
A
GLY
1009
n
9
GLY
1009
A
PRO
1010
n
10
PRO
1010
A
CYS
1011
n
11
CYS
1011
A
ALA
1012
n
12
ALA
1012
A
ILE
1013
n
13
ILE
1013
A
GLU
1014
n
14
GLU
1014
A
SER
1015
n
15
SER
1015
A
GLU
1016
n
16
GLU
1016
A
GLU
1017
n
17
GLU
1017
A
LEU
1018
n
18
LEU
1018
A
LEU
1019
n
19
LEU
1019
A
LEU
1020
n
20
LEU
1020
A
LYS
1021
n
21
LYS
1021
A
VAL
1022
n
22
VAL
1022
A
GLY
1023
n
23
GLY
1023
A
GLU
1024
n
24
GLU
1024
A
GLU
1025
n
25
GLU
1025
A
ILE
1026
n
26
ILE
1026
A
LYS
1027
n
27
LYS
1027
A
ARG
1028
n
28
ARG
1028
A
LEU
1029
n
29
LEU
1029
A
SER
1030
n
30
SER
1030
A
GLU
1031
n
31
GLU
1031
A
LYS
1032
n
32
LYS
1032
A
PHE
1033
n
33
PHE
1033
A
LYS
1034
n
34
LYS
1034
A
GLU
1035
n
35
GLU
1035
A
VAL
1036
n
36
VAL
1036
A
GLU
1037
n
37
GLU
1037
A
PHE
1038
n
38
PHE
1038
A
VAL
1039
n
39
VAL
1039
A
PHE
1040
n
40
PHE
1040
A
LYS
1041
n
41
LYS
1041
A
SER
1042
n
42
SER
1042
A
SER
1043
n
43
SER
1043
A
PHE
1044
n
44
PHE
1044
A
ASP
1045
n
45
ASP
1045
A
LYS
1046
n
46
LYS
1046
A
ALA
1047
n
47
ALA
1047
A
ASN
1048
n
48
ASN
1048
A
ARG
1049
n
49
ARG
1049
A
SER
1050
n
50
SER
1050
A
SER
1051
n
51
SER
1051
A
ILE
1052
n
52
ILE
1052
A
HIS
1053
n
53
HIS
1053
A
SER
1054
n
54
SER
1054
A
PHE
1055
n
55
PHE
1055
A
ARG
1056
n
56
ARG
1056
A
GLY
1057
n
57
GLY
1057
A
HIS
1058
n
58
HIS
1058
A
GLY
1059
n
59
GLY
1059
A
LEU
1060
n
60
LEU
1060
A
GLU
1061
n
61
GLU
1061
A
TYR
1062
n
62
TYR
1062
A
GLY
1063
n
63
GLY
1063
A
VAL
1064
n
64
VAL
1064
A
LYS
1065
n
65
LYS
1065
A
ALA
1066
n
66
ALA
1066
A
LEU
1067
n
67
LEU
1067
A
ARG
1068
n
68
ARG
1068
A
LYS
1069
n
69
LYS
1069
A
VAL
1070
n
70
VAL
1070
A
LYS
1071
n
71
LYS
1071
A
GLN
1072
n
72
GLU
1072
A
GLU
1073
n
73
GLU
1073
A
PHE
1074
n
74
PHE
1074
A
GLY
1075
n
75
GLY
1075
A
LEU
1076
n
76
LEU
1076
A
LYS
1077
n
77
LYS
1077
A
ILE
1078
n
78
ILE
1078
A
THR
1079
n
79
THR
1079
A
THR
1080
n
80
THR
1080
A
ASP
1081
n
81
ASP
1081
A
ILE
1082
n
82
ILE
1082
A
HIS
1083
n
83
HIS
1083
A
GLU
1084
n
84
GLU
1084
A
SER
1085
n
85
SER
1085
A
TRP
1086
n
86
TRP
1086
A
GLN
1087
n
87
GLN
1087
A
ALA
1088
n
88
ALA
1088
A
GLU
1089
n
89
GLU
1089
A
PRO
1090
n
90
PRO
1090
A
VAL
1091
n
91
VAL
1091
A
ALA
1092
n
92
ALA
1092
A
GLU
1093
n
93
GLU
1093
A
VAL
1094
n
94
VAL
1094
A
ALA
1095
n
95
ALA
1095
A
ASP
1096
n
96
ASP
1096
A
ILE
1097
n
97
ILE
1097
A
ILE
1098
n
98
ILE
1098
A
GLN
1099
n
99
GLN
1099
A
ILE
1100
n
100
ILE
1100
A
PRO
1101
n
101
PRO
1101
A
ALA
1102
n
102
ALA
1102
A
PHE
1103
n
103
PHE
1103
A
LEU
1104
n
104
LEU
1104
A
CYS
1105
n
105
CYS
1105
A
ARG
1106
n
106
ARG
1106
A
GLN
1107
n
107
GLN
1107
A
THR
1108
n
108
THR
1108
A
ASP
1109
n
109
ASP
1109
A
LEU
1110
n
110
LEU
1110
A
LEU
1111
n
111
LEU
1111
A
LEU
1112
n
112
LEU
1112
A
ALA
1113
n
113
ALA
1113
A
ALA
1114
n
114
ALA
1114
A
ALA
1115
n
115
ALA
1115
A
LYS
1116
n
116
LYS
1116
A
THR
1117
n
117
THR
1117
A
GLY
1118
n
118
GLY
1118
A
ARG
1119
n
119
ARG
1119
A
ALA
1120
n
120
ALA
1120
A
VAL
1121
n
121
VAL
1121
A
ASN
1122
n
122
ASN
1122
A
VAL
1123
n
123
VAL
1123
A
LYS
1124
n
124
LYS
1124
A
LYS
1125
n
125
LYS
1125
A
GLY
1126
n
126
GLY
1126
A
GLN
1127
n
127
GLN
1127
A
PHE
1128
n
128
PHE
1128
A
LEU
1129
n
129
LEU
1129
A
ALA
1130
n
130
ALA
1130
A
PRO
1131
n
131
PRO
1131
A
TRP
1132
n
132
TRP
1132
A
ASP
1133
n
133
ASP
1133
A
THR
1134
n
134
THR
1134
A
LYS
1135
n
135
LYS
1135
A
ASN
1136
n
136
ASN
1136
A
VAL
1137
n
137
VAL
1137
A
VAL
1138
n
138
VAL
1138
A
GLU
1139
n
139
GLU
1139
A
LYS
1140
n
140
LYS
1140
A
LEU
1141
n
141
LEU
1141
A
LYS
1142
n
142
LYS
1142
A
PHE
1143
n
143
PHE
1143
A
GLY
1144
n
144
GLY
1144
A
GLY
1145
n
145
GLY
1145
A
ALA
1146
n
146
ALA
1146
A
LYS
1147
n
147
LYS
1147
A
GLU
1148
n
148
GLU
1148
A
ILE
1149
n
149
ILE
1149
A
TYR
1150
n
150
TYR
1150
A
LEU
1151
n
151
LEU
1151
A
THR
1152
n
152
THR
1152
A
GLU
1153
n
153
GLU
1153
A
ARG
1154
n
154
ARG
1154
A
GLY
1155
n
155
GLY
1155
A
THR
1156
n
156
THR
1156
A
THR
1157
n
157
THR
1157
A
PHE
1158
n
158
PHE
1158
A
GLY
1159
n
159
GLY
1159
A
TYR
1160
n
160
TYR
1160
A
ASN
1161
n
161
ASN
1161
A
ASN
1162
n
162
ASN
1162
A
LEU
1163
n
163
LEU
1163
A
VAL
1164
n
164
VAL
1164
A
VAL
1165
n
165
VAL
1165
A
ASP
1166
n
166
ASP
1166
A
PHE
1167
n
167
PHE
1167
A
ARG
1168
n
168
ARG
1168
A
SER
1169
n
169
SER
1169
A
LEU
1170
n
170
LEU
1170
A
PRO
1171
n
171
PRO
1171
A
ILE
1172
n
172
ILE
1172
A
MET
1173
n
173
MET
1173
A
LYS
1174
n
174
LYS
1174
A
GLN
1175
n
175
GLN
1175
A
TRP
1176
n
176
TRP
1176
A
ALA
1177
n
177
ALA
1177
A
LYS
1178
n
178
LYS
1178
A
VAL
1179
n
179
VAL
1179
A
ILE
1180
n
180
ILE
1180
A
TYR
1181
n
181
TYR
1181
A
ASP
1182
n
182
ASP
1182
A
ALA
1183
n
183
ALA
1183
A
THR
1184
n
184
THR
1184
A
HIS
1185
n
185
HIS
1185
A
SER
1186
n
186
SER
1186
A
VAL
1187
n
187
VAL
1187
A
GLN
1188
n
188
GLN
1188
A
LEU
1189
n
189
LEU
1189
A
PRO
1190
n
190
PRO
1190
A
GLY
1191
n
191
GLY
1191
A
GLY
1192
n
192
GLY
1192
A
LEU
1193
n
193
LEU
1193
A
n
194
1194
A
n
195
1195
A
n
196
1196
A
n
197
1197
A
n
198
1198
A
GLY
1199
n
199
GLY
1199
A
MET
1200
n
200
MET
1200
A
ARG
1201
n
201
ARG
1201
A
GLU
1202
n
202
GLU
1202
A
PHE
1203
n
203
PHE
1203
A
ILE
1204
n
204
ILE
1204
A
PHE
1205
n
205
PHE
1205
A
PRO
1206
n
206
PRO
1206
A
LEU
1207
n
207
LEU
1207
A
ILE
1208
n
208
ILE
1208
A
ARG
1209
n
209
ARG
1209
A
ALA
1210
n
210
ALA
1210
A
ALA
1211
n
211
ALA
1211
A
VAL
1212
n
212
VAL
1212
A
ALA
1213
n
213
ALA
1213
A
VAL
1214
n
214
VAL
1214
A
GLY
1215
n
215
GLY
1215
A
CYS
1216
n
216
CYS
1216
A
ASP
1217
n
217
ASP
1217
A
GLY
1218
n
218
GLY
1218
A
VAL
1219
n
219
VAL
1219
A
PHE
1220
n
220
PHE
1220
A
MET
1221
n
221
MET
1221
A
GLU
1222
n
222
GLU
1222
A
THR
1223
n
223
THR
1223
A
HIS
1224
n
224
HIS
1224
A
PRO
1225
n
225
PRO
1225
A
GLU
1226
n
226
GLU
1226
A
PRO
1227
n
227
PRO
1227
A
GLU
1228
n
228
GLU
1228
A
LYS
1229
n
229
LYS
1229
A
ALA
1230
n
230
ALA
1230
A
LEU
1231
n
231
LEU
1231
A
SER
1232
n
232
SER
1232
A
ASP
1233
n
233
ASP
1233
A
ALA
1234
n
234
ALA
1234
A
SER
1235
n
235
SER
1235
A
THR
1236
n
236
THR
1236
A
GLN
1237
n
237
GLN
1237
A
LEU
1238
n
238
LEU
1238
A
PRO
1239
n
239
PRO
1239
A
LEU
1240
n
240
LEU
1240
A
SER
1241
n
241
SER
1241
A
GLN
1242
n
242
GLN
1242
A
LEU
1243
n
243
LEU
1243
A
GLU
1244
n
244
GLU
1244
A
GLY
1245
n
245
GLY
1245
A
ILE
1246
n
246
ILE
1246
A
ILE
1247
n
247
ILE
1247
A
GLU
1248
n
248
GLU
1248
A
ALA
1249
n
249
ALA
1249
A
ILE
1250
n
250
ILE
1250
A
LEU
1251
n
251
LEU
1251
A
GLU
1252
n
252
GLU
1252
A
ILE
1253
n
253
ILE
1253
A
ARG
1254
n
254
ARG
1254
A
GLU
1255
n
255
GLU
1255
A
VAL
1256
n
256
VAL
1256
A
ALA
1257
n
257
ALA
1257
A
SER
1258
n
258
SER
1258
A
LYS
1259
n
259
LYS
1259
A
TYR
1260
n
260
TYR
1260
A
TYR
1261
n
261
TYR
1261
A
GLU
1262
n
262
GLU
1262
A
THR
1263
n
263
THR
1263
A
ILE
1264
n
264
ILE
1264
A
n
265
1265
A
n
266
1266
A
n
267
1267
A
n
1
2001
B
n
2
2002
B
LYS
2003
n
3
LYS
2003
B
PHE
2004
n
4
PHE
2004
B
LEU
2005
n
5
LEU
2005
B
VAL
2006
n
6
VAL
2006
B
ILE
2007
n
7
ILE
2007
B
ALA
2008
n
8
ALA
2008
B
GLY
2009
n
9
GLY
2009
B
PRO
2010
n
10
PRO
2010
B
CYS
2011
n
11
CYS
2011
B
ALA
2012
n
12
ALA
2012
B
ILE
2013
n
13
ILE
2013
B
GLU
2014
n
14
GLU
2014
B
SER
2015
n
15
SER
2015
B
GLU
2016
n
16
GLU
2016
B
GLU
2017
n
17
GLU
2017
B
LEU
2018
n
18
LEU
2018
B
LEU
2019
n
19
LEU
2019
B
LEU
2020
n
20
LEU
2020
B
LYS
2021
n
21
LYS
2021
B
VAL
2022
n
22
VAL
2022
B
GLY
2023
n
23
GLY
2023
B
GLU
2024
n
24
GLU
2024
B
GLU
2025
n
25
GLU
2025
B
ILE
2026
n
26
ILE
2026
B
LYS
2027
n
27
LYS
2027
B
ARG
2028
n
28
ARG
2028
B
LEU
2029
n
29
LEU
2029
B
SER
2030
n
30
SER
2030
B
GLU
2031
n
31
GLU
2031
B
LYS
2032
n
32
LYS
2032
B
PHE
2033
n
33
PHE
2033
B
LYS
2034
n
34
LYS
2034
B
GLU
2035
n
35
GLU
2035
B
VAL
2036
n
36
VAL
2036
B
GLU
2037
n
37
GLU
2037
B
PHE
2038
n
38
PHE
2038
B
VAL
2039
n
39
VAL
2039
B
PHE
2040
n
40
PHE
2040
B
LYS
2041
n
41
LYS
2041
B
SER
2042
n
42
SER
2042
B
SER
2043
n
43
SER
2043
B
PHE
2044
n
44
PHE
2044
B
ASP
2045
n
45
ASP
2045
B
LYS
2046
n
46
LYS
2046
B
ALA
2047
n
47
ALA
2047
B
ASN
2048
n
48
ASN
2048
B
ARG
2049
n
49
ARG
2049
B
SER
2050
n
50
SER
2050
B
SER
2051
n
51
SER
2051
B
ILE
2052
n
52
ILE
2052
B
HIS
2053
n
53
HIS
2053
B
SER
2054
n
54
SER
2054
B
PHE
2055
n
55
PHE
2055
B
ARG
2056
n
56
ARG
2056
B
GLY
2057
n
57
GLY
2057
B
HIS
2058
n
58
HIS
2058
B
GLY
2059
n
59
GLY
2059
B
LEU
2060
n
60
LEU
2060
B
GLU
2061
n
61
GLU
2061
B
TYR
2062
n
62
TYR
2062
B
GLY
2063
n
63
GLY
2063
B
VAL
2064
n
64
VAL
2064
B
LYS
2065
n
65
LYS
2065
B
ALA
2066
n
66
ALA
2066
B
LEU
2067
n
67
LEU
2067
B
ARG
2068
n
68
ARG
2068
B
LYS
2069
n
69
LYS
2069
B
VAL
2070
n
70
VAL
2070
B
LYS
2071
n
71
LYS
2071
B
GLU
2072
n
72
GLU
2072
B
GLU
2073
n
73
GLU
2073
B
PHE
2074
n
74
PHE
2074
B
GLY
2075
n
75
GLY
2075
B
LEU
2076
n
76
LEU
2076
B
LYS
2077
n
77
LYS
2077
B
ILE
2078
n
78
ILE
2078
B
THR
2079
n
79
THR
2079
B
THR
2080
n
80
THR
2080
B
ASP
2081
n
81
ASP
2081
B
ILE
2082
n
82
ILE
2082
B
HIS
2083
n
83
HIS
2083
B
GLU
2084
n
84
GLU
2084
B
SER
2085
n
85
SER
2085
B
TRP
2086
n
86
TRP
2086
B
GLN
2087
n
87
GLN
2087
B
ALA
2088
n
88
ALA
2088
B
GLU
2089
n
89
GLU
2089
B
PRO
2090
n
90
PRO
2090
B
VAL
2091
n
91
VAL
2091
B
ALA
2092
n
92
ALA
2092
B
GLU
2093
n
93
GLU
2093
B
VAL
2094
n
94
VAL
2094
B
ALA
2095
n
95
ALA
2095
B
ASP
2096
n
96
ASP
2096
B
ILE
2097
n
97
ILE
2097
B
ILE
2098
n
98
ILE
2098
B
GLN
2099
n
99
GLN
2099
B
ILE
2100
n
100
ILE
2100
B
PRO
2101
n
101
PRO
2101
B
ALA
2102
n
102
ALA
2102
B
PHE
2103
n
103
PHE
2103
B
LEU
2104
n
104
LEU
2104
B
CYS
2105
n
105
CYS
2105
B
ARG
2106
n
106
ARG
2106
B
GLN
2107
n
107
GLN
2107
B
THR
2108
n
108
THR
2108
B
ASP
2109
n
109
ASP
2109
B
LEU
2110
n
110
LEU
2110
B
LEU
2111
n
111
LEU
2111
B
LEU
2112
n
112
LEU
2112
B
ALA
2113
n
113
ALA
2113
B
ALA
2114
n
114
ALA
2114
B
ALA
2115
n
115
ALA
2115
B
LYS
2116
n
116
LYS
2116
B
THR
2117
n
117
THR
2117
B
GLY
2118
n
118
GLY
2118
B
ARG
2119
n
119
ARG
2119
B
ALA
2120
n
120
ALA
2120
B
VAL
2121
n
121
VAL
2121
B
ASN
2122
n
122
ASN
2122
B
VAL
2123
n
123
VAL
2123
B
LYS
2124
n
124
LYS
2124
B
LYS
2125
n
125
LYS
2125
B
GLY
2126
n
126
GLY
2126
B
GLN
2127
n
127
GLN
2127
B
PHE
2128
n
128
PHE
2128
B
LEU
2129
n
129
LEU
2129
B
ALA
2130
n
130
ALA
2130
B
PRO
2131
n
131
PRO
2131
B
TRP
2132
n
132
TRP
2132
B
ASP
2133
n
133
ASP
2133
B
THR
2134
n
134
THR
2134
B
LYS
2135
n
135
LYS
2135
B
ASN
2136
n
136
ASN
2136
B
VAL
2137
n
137
VAL
2137
B
VAL
2138
n
138
VAL
2138
B
GLU
2139
n
139
GLU
2139
B
LYS
2140
n
140
LYS
2140
B
LEU
2141
n
141
LEU
2141
B
LYS
2142
n
142
LYS
2142
B
PHE
2143
n
143
PHE
2143
B
GLY
2144
n
144
GLY
2144
B
GLY
2145
n
145
GLY
2145
B
ALA
2146
n
146
ALA
2146
B
LYS
2147
n
147
LYS
2147
B
GLU
2148
n
148
GLU
2148
B
ILE
2149
n
149
ILE
2149
B
TYR
2150
n
150
TYR
2150
B
LEU
2151
n
151
LEU
2151
B
THR
2152
n
152
THR
2152
B
GLU
2153
n
153
GLU
2153
B
ARG
2154
n
154
ARG
2154
B
GLY
2155
n
155
GLY
2155
B
THR
2156
n
156
THR
2156
B
THR
2157
n
157
THR
2157
B
PHE
2158
n
158
PHE
2158
B
GLY
2159
n
159
GLY
2159
B
TYR
2160
n
160
TYR
2160
B
ASN
2161
n
161
ASN
2161
B
ASN
2162
n
162
ASN
2162
B
LEU
2163
n
163
LEU
2163
B
VAL
2164
n
164
VAL
2164
B
VAL
2165
n
165
VAL
2165
B
ASP
2166
n
166
ASP
2166
B
PHE
2167
n
167
PHE
2167
B
ARG
2168
n
168
ARG
2168
B
SER
2169
n
169
SER
2169
B
LEU
2170
n
170
LEU
2170
B
PRO
2171
n
171
PRO
2171
B
ILE
2172
n
172
ILE
2172
B
MET
2173
n
173
MET
2173
B
LYS
2174
n
174
LYS
2174
B
GLN
2175
n
175
GLN
2175
B
TRP
2176
n
176
TRP
2176
B
ALA
2177
n
177
ALA
2177
B
LYS
2178
n
178
LYS
2178
B
VAL
2179
n
179
VAL
2179
B
ILE
2180
n
180
ILE
2180
B
TYR
2181
n
181
TYR
2181
B
ASP
2182
n
182
ASP
2182
B
ALA
2183
n
183
ALA
2183
B
THR
2184
n
184
THR
2184
B
HIS
2185
n
185
HIS
2185
B
SER
2186
n
186
SER
2186
B
VAL
2187
n
187
VAL
2187
B
GLN
2188
n
188
GLN
2188
B
LEU
2189
n
189
LEU
2189
B
PRO
2190
n
190
PRO
2190
B
GLY
2191
n
191
GLY
2191
B
n
192
2192
B
n
193
2193
B
n
194
2194
B
n
195
2195
B
n
196
2196
B
n
197
2197
B
n
198
2198
B
GLY
2199
n
199
GLY
2199
B
MET
2200
n
200
MET
2200
B
ARG
2201
n
201
ARG
2201
B
GLU
2202
n
202
GLU
2202
B
PHE
2203
n
203
PHE
2203
B
ILE
2204
n
204
ILE
2204
B
PHE
2205
n
205
PHE
2205
B
PRO
2206
n
206
PRO
2206
B
LEU
2207
n
207
LEU
2207
B
ILE
2208
n
208
ILE
2208
B
ARG
2209
n
209
ARG
2209
B
ALA
2210
n
210
ALA
2210
B
ALA
2211
n
211
ALA
2211
B
VAL
2212
n
212
VAL
2212
B
ALA
2213
n
213
ALA
2213
B
VAL
2214
n
214
VAL
2214
B
GLY
2215
n
215
GLY
2215
B
CYS
2216
n
216
CYS
2216
B
ASP
2217
n
217
ASP
2217
B
GLY
2218
n
218
GLY
2218
B
VAL
2219
n
219
VAL
2219
B
PHE
2220
n
220
PHE
2220
B
MET
2221
n
221
MET
2221
B
GLU
2222
n
222
GLU
2222
B
THR
2223
n
223
THR
2223
B
HIS
2224
n
224
HIS
2224
B
PRO
2225
n
225
PRO
2225
B
GLU
2226
n
226
GLU
2226
B
PRO
2227
n
227
PRO
2227
B
GLU
2228
n
228
GLU
2228
B
LYS
2229
n
229
LYS
2229
B
ALA
2230
n
230
ALA
2230
B
LEU
2231
n
231
LEU
2231
B
SER
2232
n
232
SER
2232
B
ASP
2233
n
233
ASP
2233
B
ALA
2234
n
234
ALA
2234
B
SER
2235
n
235
SER
2235
B
THR
2236
n
236
THR
2236
B
GLN
2237
n
237
GLN
2237
B
LEU
2238
n
238
LEU
2238
B
PRO
2239
n
239
PRO
2239
B
LEU
2240
n
240
LEU
2240
B
SER
2241
n
241
SER
2241
B
GLN
2242
n
242
GLN
2242
B
LEU
2243
n
243
LEU
2243
B
GLU
2244
n
244
GLU
2244
B
GLY
2245
n
245
GLY
2245
B
ILE
2246
n
246
ILE
2246
B
ILE
2247
n
247
ILE
2247
B
GLU
2248
n
248
GLU
2248
B
ALA
2249
n
249
ALA
2249
B
ILE
2250
n
250
ILE
2250
B
LEU
2251
n
251
LEU
2251
B
GLU
2252
n
252
GLU
2252
B
ILE
2253
n
253
ILE
2253
B
ARG
2254
n
254
ARG
2254
B
GLU
2255
n
255
GLU
2255
B
VAL
2256
n
256
VAL
2256
B
ALA
2257
n
257
ALA
2257
B
SER
2258
n
258
SER
2258
B
LYS
2259
n
259
LYS
2259
B
TYR
2260
n
260
TYR
2260
B
TYR
2261
n
261
TYR
2261
B
GLU
2262
n
262
GLU
2262
B
THR
2263
n
263
THR
2263
B
ILE
2264
n
264
ILE
2264
B
n
265
2265
B
n
266
2266
B
n
267
2267
B
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
16140
-115
33900
A
HOH
276
I
O
HOH
1_555
A
CD
1270
D
CD
CD
1_555
A
CYS
1011
A
SG
CYS
11
1_555
91.8
A
HOH
276
I
O
HOH
1_555
A
CD
1270
D
CD
CD
1_555
A
HIS
1185
A
NE2
HIS
185
1_555
82.0
A
CYS
1011
A
SG
CYS
11
1_555
A
CD
1270
D
CD
CD
1_555
A
HIS
1185
A
NE2
HIS
185
1_555
173.4
A
HOH
276
I
O
HOH
1_555
A
CD
1270
D
CD
CD
1_555
A
GLU
1222
A
OE2
GLU
222
1_555
143.1
A
CYS
1011
A
SG
CYS
11
1_555
A
CD
1270
D
CD
CD
1_555
A
GLU
1222
A
OE2
GLU
222
1_555
78.8
A
HIS
1185
A
NE2
HIS
185
1_555
A
CD
1270
D
CD
CD
1_555
A
GLU
1222
A
OE2
GLU
222
1_555
104.8
A
HOH
276
I
O
HOH
1_555
A
CD
1270
D
CD
CD
1_555
A
GLU
1222
A
OE1
GLU
222
1_555
159.9
A
CYS
1011
A
SG
CYS
11
1_555
A
CD
1270
D
CD
CD
1_555
A
GLU
1222
A
OE1
GLU
222
1_555
86.6
A
HIS
1185
A
NE2
HIS
185
1_555
A
CD
1270
D
CD
CD
1_555
A
GLU
1222
A
OE1
GLU
222
1_555
100.0
A
GLU
1222
A
OE2
GLU
222
1_555
A
CD
1270
D
CD
CD
1_555
A
GLU
1222
A
OE1
GLU
222
1_555
56.0
A
HOH
276
I
O
HOH
1_555
A
CD
1270
D
CD
CD
1_555
A
ASP
1233
A
OD2
ASP
233
1_555
94.7
A
CYS
1011
A
SG
CYS
11
1_555
A
CD
1270
D
CD
CD
1_555
A
ASP
1233
A
OD2
ASP
233
1_555
97.5
A
HIS
1185
A
NE2
HIS
185
1_555
A
CD
1270
D
CD
CD
1_555
A
ASP
1233
A
OD2
ASP
233
1_555
85.4
A
GLU
1222
A
OE2
GLU
222
1_555
A
CD
1270
D
CD
CD
1_555
A
ASP
1233
A
OD2
ASP
233
1_555
121.7
A
GLU
1222
A
OE1
GLU
222
1_555
A
CD
1270
D
CD
CD
1_555
A
ASP
1233
A
OD2
ASP
233
1_555
65.7
B
CYS
2011
B
SG
CYS
11
1_555
B
CD
2270
G
CD
CD
1_555
B
HIS
2185
B
NE2
HIS
185
1_555
173.1
B
CYS
2011
B
SG
CYS
11
1_555
B
CD
2270
G
CD
CD
1_555
B
GLU
2222
B
OE1
GLU
222
1_555
87.2
B
HIS
2185
B
NE2
HIS
185
1_555
B
CD
2270
G
CD
CD
1_555
B
GLU
2222
B
OE1
GLU
222
1_555
92.5
B
CYS
2011
B
SG
CYS
11
1_555
B
CD
2270
G
CD
CD
1_555
B
GLU
2222
B
OE2
GLU
222
1_555
82.6
B
HIS
2185
B
NE2
HIS
185
1_555
B
CD
2270
G
CD
CD
1_555
B
GLU
2222
B
OE2
GLU
222
1_555
102.7
B
GLU
2222
B
OE1
GLU
222
1_555
B
CD
2270
G
CD
CD
1_555
B
GLU
2222
B
OE2
GLU
222
1_555
52.7
B
CYS
2011
B
SG
CYS
11
1_555
B
CD
2270
G
CD
CD
1_555
B
ASP
2233
B
OD2
ASP
233
1_555
77.8
B
HIS
2185
B
NE2
HIS
185
1_555
B
CD
2270
G
CD
CD
1_555
B
ASP
2233
B
OD2
ASP
233
1_555
95.4
B
GLU
2222
B
OE1
GLU
222
1_555
B
CD
2270
G
CD
CD
1_555
B
ASP
2233
B
OD2
ASP
233
1_555
75.0
B
GLU
2222
B
OE2
GLU
222
1_555
B
CD
2270
G
CD
CD
1_555
B
ASP
2233
B
OD2
ASP
233
1_555
124.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
1238
A
O
LEU
238
A
N
HIS
1224
A
N
HIS
224
A
O
PHE
1220
A
O
PHE
220
A
N
TYR
1181
A
N
TYR
181
A
O
ILE
1180
A
O
ILE
180
A
N
LEU
1151
A
N
LEU
151
A
O
THR
1152
A
O
THR
152
A
N
VAL
1123
A
N
VAL
123
A
O
ALA
1120
A
O
ALA
120
A
N
ILE
1098
A
N
ILE
98
A
O
GLN
1099
A
O
GLN
99
A
N
THR
1080
A
N
THR
80
A
O
LYS
1077
A
O
LYS
77
A
N
PHE
1040
A
N
PHE
40
A
O
GLU
1037
A
O
GLU
37
A
N
PHE
1004
A
N
PHE
4
A
N
ILE
1007
A
N
ILE
7
A
O
VAL
1219
A
O
VAL
219
A
N
THR
1156
A
N
THR
156
A
O
VAL
1164
A
O
VAL
164
B
O
LEU
2238
B
O
LEU
238
B
N
HIS
2224
B
N
HIS
224
B
O
PHE
2220
B
O
PHE
220
B
N
TYR
2181
B
N
TYR
181
B
O
ASP
2182
B
O
ASP
182
B
N
GLU
2153
B
N
GLU
153
B
O
THR
2152
B
O
THR
152
B
N
VAL
2123
B
N
VAL
123
B
O
ALA
2120
B
O
ALA
120
B
N
ILE
2098
B
N
ILE
98
B
O
GLN
2099
B
O
GLN
99
B
N
THR
2080
B
N
THR
80
B
O
LYS
2077
B
O
LYS
77
B
N
PHE
2040
B
N
PHE
40
B
O
VAL
2039
B
O
VAL
39
B
N
VAL
2006
B
N
VAL
6
B
N
ILE
2007
B
N
ILE
7
B
O
MET
2221
B
O
MET
221
B
N
THR
2156
B
N
THR
156
B
O
VAL
2164
B
O
VAL
164
1
A
MET
1001
A
MET
1
1
Y
1
A
GLY
1194
A
GLY
194
1
Y
1
A
ASP
1195
A
ASP
195
1
Y
1
A
LYS
1196
A
LYS
196
1
Y
1
A
SER
1197
A
SER
197
1
Y
1
A
GLY
1198
A
GLY
198
1
Y
1
A
PRO
1265
A
PRO
265
1
Y
1
A
VAL
1266
A
VAL
266
1
Y
1
A
LYS
1267
A
LYS
267
1
Y
1
B
MET
2001
B
MET
1
1
Y
1
B
GLU
2002
B
GLU
2
1
Y
1
B
GLY
2192
B
GLY
192
1
Y
1
B
LEU
2193
B
LEU
193
1
Y
1
B
GLY
2194
B
GLY
194
1
Y
1
B
ASP
2195
B
ASP
195
1
Y
1
B
LYS
2196
B
LYS
196
1
Y
1
B
SER
2197
B
SER
197
1
Y
1
B
GLY
2198
B
GLY
198
1
Y
1
B
PRO
2265
B
PRO
265
1
Y
1
B
VAL
2266
B
VAL
266
1
Y
1
B
LYS
2267
B
LYS
267
1
Y
1
A
C2
PEZ
1268
PLANAR
1
B
C2
PEZ
2268
PLANAR
1
A
A
CD
OE2
GLU
GLU
1072
1072
0.079
0.011
1.252
1.331
N
1
B
SER
2015
178.39
148.50
1
B
PHE
2033
-110.23
77.88
1
B
SER
2042
-170.63
140.19
PROTEIN_REP.PARAM
PROTEIN.TOP
ION.PARAM
ION.TOP
PEP_A5P_MOD5.PARAM
PEP_A5P.TOPH
Z_PEP.PARAM
Z_PEP.TOPH
WATER_REP.PARAM
WATER.TOP
34.8
4.02
2.20
.00
4.61
.00
-8.63
0.234
.003
0.203
0.203
0.203
1.80
22.12
5858
59820
57688
10.2
93.7
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
FOURIER SYNTHESIS
1FWN
Engh & Huber
FLAT MODEL
54.147
.401074
.25
0.22
5.0
.22
0.22
1.80
22.12
281
4362
34
0
4047
.005
1.3
22.3
.78
1.25
1.50
1.87
2.00
2.03
2.00
3.06
2.50
0.382
.014
0.365
1.91
763
7086
6
9.7
77.8
31.9
1.8
22.12
1PCK
59820
57688
.0
2
0.102
1
16.0
10.23
93.7
1.8
1.94
3.14
0.516
1
77.8
refinement
CNS
1.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Aquifex aeolicus KDO8PS in complex with Z-methyl-PEP
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
The second part of the biological assembly is generated
by the symmetry operation: x=y, y=x, z=-z
A
SER
1015
A
SER
15
HELX_P
A
PHE
1033
A
PHE
33
1
1
19
A
GLY
1059
A
GLY
59
HELX_P
A
GLY
1075
A
GLY
75
1
2
17
A
GLU
1084
A
GLU
84
HELX_P
A
TRP
1086
A
TRP
86
5
3
3
A
GLN
1087
A
GLN
87
HELX_P
A
GLU
1093
A
GLU
93
1
4
7
A
PRO
1101
A
PRO
101
HELX_P
A
CYS
1105
A
CYS
105
5
5
5
A
GLN
1107
A
GLN
107
HELX_P
A
LYS
1116
A
LYS
116
1
6
10
A
ALA
1130
A
ALA
130
HELX_P
A
ASP
1133
A
ASP
133
5
7
4
A
THR
1134
A
THR
134
HELX_P
A
GLY
1144
A
GLY
144
1
8
11
A
ARG
1168
A
ARG
168
HELX_P
A
LYS
1174
A
LYS
174
1
9
7
A
THR
1184
A
THR
184
HELX_P
A
GLN
1188
A
GLN
188
5
10
5
A
MET
1200
A
MET
200
HELX_P
A
GLU
1202
A
GLU
202
5
11
3
A
PHE
1203
A
PHE
203
HELX_P
A
GLY
1215
A
GLY
215
1
12
13
A
GLU
1226
A
GLU
226
HELX_P
A
ALA
1230
A
ALA
230
5
13
5
A
GLN
1242
A
GLN
242
HELX_P
A
LYS
1259
A
LYS
259
1
14
18
B
SER
2015
B
SER
15
HELX_P
B
PHE
2033
B
PHE
33
1
15
19
B
GLY
2059
B
GLY
59
HELX_P
B
GLY
2075
B
GLY
75
1
16
17
B
GLU
2084
B
GLU
84
HELX_P
B
TRP
2086
B
TRP
86
5
17
3
B
GLN
2087
B
GLN
87
HELX_P
B
GLU
2093
B
GLU
93
1
18
7
B
PRO
2101
B
PRO
101
HELX_P
B
CYS
2105
B
CYS
105
5
19
5
B
GLN
2107
B
GLN
107
HELX_P
B
THR
2117
B
THR
117
1
20
11
B
ALA
2130
B
ALA
130
HELX_P
B
ASP
2133
B
ASP
133
5
21
4
B
THR
2134
B
THR
134
HELX_P
B
GLY
2144
B
GLY
144
1
22
11
B
ARG
2168
B
ARG
168
HELX_P
B
LYS
2174
B
LYS
174
1
23
7
B
THR
2184
B
THR
184
HELX_P
B
GLN
2188
B
GLN
188
5
24
5
B
MET
2200
B
MET
200
HELX_P
B
GLU
2202
B
GLU
202
5
25
3
B
PHE
2203
B
PHE
203
HELX_P
B
GLY
2215
B
GLY
215
1
26
13
B
GLU
2226
B
GLU
226
HELX_P
B
ALA
2230
B
ALA
230
5
27
5
B
GLN
2242
B
GLN
242
HELX_P
B
SER
2258
B
SER
258
1
28
17
B
LYS
2259
B
LYS
259
HELX_P
B
TYR
2261
B
TYR
261
5
29
3
metalc
2.411
A
HOH
276
I
O
HOH
1_555
A
CD
1270
D
CD
CD
1_555
metalc
2.675
A
CYS
1011
A
SG
CYS
11
1_555
A
CD
1270
D
CD
CD
1_555
metalc
2.323
A
HIS
1185
A
NE2
HIS
185
1_555
A
CD
1270
D
CD
CD
1_555
metalc
2.355
A
GLU
1222
A
OE2
GLU
222
1_555
A
CD
1270
D
CD
CD
1_555
metalc
2.342
A
GLU
1222
A
OE1
GLU
222
1_555
A
CD
1270
D
CD
CD
1_555
metalc
2.383
A
ASP
1233
A
OD2
ASP
233
1_555
A
CD
1270
D
CD
CD
1_555
metalc
2.610
B
CYS
2011
B
SG
CYS
11
1_555
B
CD
2270
G
CD
CD
1_555
metalc
2.342
B
HIS
2185
B
NE2
HIS
185
1_555
B
CD
2270
G
CD
CD
1_555
metalc
2.654
B
GLU
2222
B
OE1
GLU
222
1_555
B
CD
2270
G
CD
CD
1_555
metalc
2.258
B
GLU
2222
B
OE2
GLU
222
1_555
B
CD
2270
G
CD
CD
1_555
metalc
2.358
B
ASP
2233
B
OD2
ASP
233
1_555
B
CD
2270
G
CD
CD
1_555
LYASE
beta(8)/alpha(8) barrel, Lyase
KDSA_AQUAE
UNP
1
1
O66496
MEKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITT
DIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGY
NNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPL
SQLEGIIEAILEIREVASKYYETIPVK
1
267
1PCK
1001
1267
O66496
A
1
1
267
1
267
1PCK
2001
2267
O66496
B
1
1
267
10
2
10
2
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LEU
1238
A
LEU
238
A
PRO
1239
A
PRO
239
A
GLY
1218
A
GLY
218
A
HIS
1224
A
HIS
224
A
LYS
1178
A
LYS
178
A
ASP
1182
A
ASP
182
A
ILE
1149
A
ILE
149
A
GLU
1153
A
GLU
153
A
ALA
1120
A
ALA
120
A
LYS
1124
A
LYS
124
A
ILE
1097
A
ILE
97
A
ILE
1100
A
ILE
100
A
LYS
1077
A
LYS
77
A
ASP
1081
A
ASP
81
A
VAL
1036
A
VAL
36
A
LYS
1041
A
LYS
41
A
PHE
1004
A
PHE
4
A
GLY
1009
A
GLY
9
A
GLY
1218
A
GLY
218
A
HIS
1224
A
HIS
224
A
THR
1156
A
THR
156
A
THR
1157
A
THR
157
A
LEU
1163
A
LEU
163
A
VAL
1164
A
VAL
164
B
LEU
2238
B
LEU
238
B
PRO
2239
B
PRO
239
B
GLY
2218
B
GLY
218
B
HIS
2224
B
HIS
224
B
LYS
2178
B
LYS
178
B
ASP
2182
B
ASP
182
B
ILE
2149
B
ILE
149
B
GLU
2153
B
GLU
153
B
ALA
2120
B
ALA
120
B
LYS
2124
B
LYS
124
B
ILE
2097
B
ILE
97
B
ILE
2100
B
ILE
100
B
LYS
2077
B
LYS
77
B
ASP
2081
B
ASP
81
B
GLU
2037
B
GLU
37
B
LYS
2041
B
LYS
41
B
LEU
2005
B
LEU
5
B
GLY
2009
B
GLY
9
B
GLY
2218
B
GLY
218
B
HIS
2224
B
HIS
224
B
THR
2156
B
THR
156
B
THR
2157
B
THR
157
B
LEU
2163
B
LEU
163
B
VAL
2164
B
VAL
164
BINDING SITE FOR RESIDUE PO4 A 1269
A
PO4
1269
Software
4
BINDING SITE FOR RESIDUE PO4 B 2269
B
PO4
2269
Software
4
BINDING SITE FOR RESIDUE CD A 1270
A
CD
1270
Software
5
BINDING SITE FOR RESIDUE CD B 2270
B
CD
2270
Software
5
BINDING SITE FOR RESIDUE PEZ A 1268
A
PEZ
1268
Software
15
BINDING SITE FOR RESIDUE PEZ B 2268
B
PEZ
2268
Software
14
A
HOH
81
I
HOH
4
1_555
A
HOH
236
I
HOH
4
1_555
A
ARG
1049
A
ARG
49
4
1_555
A
SER
1050
A
SER
50
4
1_555
B
HOH
80
J
HOH
4
1_555
B
HOH
181
J
HOH
4
1_555
B
ARG
2049
B
ARG
49
4
1_555
B
SER
2050
B
SER
50
4
1_555
A
HOH
276
I
HOH
5
1_555
A
CYS
1011
A
CYS
11
5
1_555
A
HIS
1185
A
HIS
185
5
1_555
A
GLU
1222
A
GLU
222
5
1_555
A
ASP
1233
A
ASP
233
5
1_555
B
CYS
2011
B
CYS
11
5
1_555
B
HIS
2185
B
HIS
185
5
1_555
B
GLU
2222
B
GLU
222
5
1_555
B
ASP
2233
B
ASP
233
5
1_555
B
PEZ
2268
H
PEZ
5
1_555
A
HOH
17
I
HOH
15
1_555
A
HOH
22
I
HOH
15
1_555
A
HOH
42
I
HOH
15
1_555
A
HOH
280
I
HOH
15
1_555
A
LYS
1041
A
LYS
41
15
1_555
A
SER
1043
A
SER
43
15
1_555
A
LYS
1046
A
LYS
46
15
1_555
A
ASN
1048
A
ASN
48
15
1_555
A
GLN
1099
A
GLN
99
15
1_555
A
PRO
1101
A
PRO
101
15
1_555
A
ALA
1102
A
ALA
102
15
1_555
A
LYS
1124
A
LYS
124
15
1_555
A
ARG
1154
A
ARG
154
15
1_555
A
HIS
1185
A
HIS
185
15
1_555
A
PHE
1220
A
PHE
220
15
1_555
B
HOH
21
J
HOH
14
1_555
B
HOH
43
J
HOH
14
1_555
B
LYS
2041
B
LYS
41
14
1_555
B
SER
2043
B
SER
43
14
1_555
B
LYS
2046
B
LYS
46
14
1_555
B
ASN
2048
B
ASN
48
14
1_555
B
GLN
2099
B
GLN
99
14
1_555
B
PRO
2101
B
PRO
101
14
1_555
B
ALA
2102
B
ALA
102
14
1_555
B
LYS
2124
B
LYS
124
14
1_555
B
ARG
2154
B
ARG
154
14
1_555
B
HIS
2185
B
HIS
185
14
1_555
B
PHE
2220
B
PHE
220
14
1_555
B
CD
2270
G
CD
14
1_555
152
P 31 2 1