0.029155
0.016832
0.000000
0.000000
0.033665
0.000000
0.000000
0.000000
0.008945
0.00000
0.00000
0.00000
Romero, A.
De La Cerda, B.
Varela, P.F.
Navarro, J.A.
Hervas, M.
De La Rosa, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
34.300
34.300
111.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
275
327
336
10.1006/jmbi.1997.1455
9466912
The 2.15 A crystal structure of a triple mutant plastocyanin from the cyanobacterium Synechocystis sp. PCC 6803.
1998
US
Biochemistry
BICHAW
0033
0006-2960
35
7021
Solution Structure of Reduced Plastocyanin from the Blue-Green Alga Anabaena Variabilis
1996
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
169
521
Structure of Oxidized Poplar Plastocyanin at 1.6 A Resolution
1983
10.2210/pdb1pcs/pdb
pdb_00001pcs
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295
1
IMAGE PLATE
1996-04
MARRESEARCH
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ENRAF-NONIUS
10331.574
PLASTOCYANIN
A42D, D47P, A63L
1
man
polymer
63.546
COPPER (II) ION
1
syn
non-polymer
18.015
water
75
nat
water
no
no
ANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPGTYT
YYCEPHRGAGMVGKVVVE
ANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPGTYT
YYCEPHRGAGMVGKVVVE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Synechocystis
PCC 6803
Escherichia
sample
1148
Synechocystis sp.
PERIPLASM
562
Escherichia coli
DH-5A
PBLUESCRIPT II (SK+)
1
1.94
37.
6.0
PROTEIN WAS CRYSTALLIZED FROM 3.2M AMMONIUM SULFATE, 0.1M NA,K.PHOSPHATE, PH 6.0 WITH A PROTEIN CONCENTRATION OF 10 MG/ML
database_2
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1997-12-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
1
4
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-06-17
REL
REL
CU
COPPER (II) ION
HOH
water
WHEN SYNECHOCYSTIS PS IS ALIGNED WITH THE AMINO ACID
SEQUENCE OF POPLAR PC, THE SEQUENCE OF SYNECHOCYSTIS PC HAS
TWO ADDITIONAL RESIDUES AT THE N-TERMINAL REGION BUT LACKS
THREE AMINO ACIDS IN THE REGION FROM 50 - 61. THUS THE
NUMBERING IN SYNECHOCYSTIS PC HAS BEEN CHOSEN IN ACCORDANCE
WITH POPLAR PC, WITH THE FIRST TWO RESIDUES NUMBERED AS -2
FOR ALA AND -1 FOR ASN.
1PCY
PDB ENTRY 1PCY
PDB
experimental model
CU
275
2
CU
CU
275
A
HOH
200
3
HOH
HOH
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
263
3
HOH
HOH
263
A
HOH
264
3
HOH
HOH
264
A
HOH
265
3
HOH
HOH
265
A
HOH
266
3
HOH
HOH
266
A
HOH
267
3
HOH
HOH
267
A
HOH
268
3
HOH
HOH
268
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
ALA
-2
n
1
ALA
-2
A
ASN
-1
n
2
ASN
-1
A
ALA
1
n
3
ALA
1
A
THR
2
n
4
THR
2
A
VAL
3
n
5
VAL
3
A
LYS
4
n
6
LYS
4
A
MET
5
n
7
MET
5
A
GLY
6
n
8
GLY
6
A
SER
7
n
9
SER
7
A
ASP
8
n
10
ASP
8
A
SER
9
n
11
SER
9
A
GLY
10
n
12
GLY
10
A
ALA
11
n
13
ALA
11
A
LEU
12
n
14
LEU
12
A
VAL
13
n
15
VAL
13
A
PHE
14
n
16
PHE
14
A
GLU
15
n
17
GLU
15
A
PRO
16
n
18
PRO
16
A
SER
17
n
19
SER
17
A
THR
18
n
20
THR
18
A
VAL
19
n
21
VAL
19
A
THR
20
n
22
THR
20
A
ILE
21
n
23
ILE
21
A
LYS
22
n
24
LYS
22
A
ALA
23
n
25
ALA
23
A
GLY
24
n
26
GLY
24
A
GLU
25
n
27
GLU
25
A
GLU
26
n
28
GLU
26
A
VAL
27
n
29
VAL
27
A
LYS
28
n
30
LYS
28
A
TRP
29
n
31
TRP
29
A
VAL
30
n
32
VAL
30
A
ASN
31
n
33
ASN
31
A
ASN
32
n
34
ASN
32
A
LYS
33
n
35
LYS
33
A
LEU
34
n
36
LEU
34
A
SER
35
n
37
SER
35
A
PRO
36
n
38
PRO
36
A
HIS
37
n
39
HIS
37
A
ASN
38
n
40
ASN
38
A
ILE
39
n
41
ILE
39
A
VAL
40
n
42
VAL
40
A
PHE
41
n
43
PHE
41
A
ASP
42
n
44
ASP
42
A
ALA
43
n
45
ALA
43
A
ASP
44
n
46
ASP
44
A
GLY
45
n
47
GLY
45
A
VAL
46
n
48
VAL
46
A
PRO
47
n
49
PRO
47
A
ALA
48
n
50
ALA
48
A
ASP
50
n
51
ASP
50
A
THR
51
n
52
THR
51
A
ALA
52
n
53
ALA
52
A
ALA
53
n
54
ALA
53
A
LYS
54
n
55
LYS
54
A
LEU
55
n
56
LEU
55
A
SER
56
n
57
SER
56
A
HIS
57
n
58
HIS
57
A
LYS
58
n
59
LYS
58
A
GLY
61
n
60
GLY
61
A
LEU
62
n
61
LEU
62
A
LEU
63
n
62
LEU
63
A
PHE
64
n
63
PHE
64
A
ALA
65
n
64
ALA
65
A
ALA
66
n
65
ALA
66
A
GLY
67
n
66
GLY
67
A
GLU
68
n
67
GLU
68
A
SER
69
n
68
SER
69
A
PHE
70
n
69
PHE
70
A
THR
71
n
70
THR
71
A
SER
72
n
71
SER
72
A
THR
73
n
72
THR
73
A
PHE
74
n
73
PHE
74
A
THR
75
n
74
THR
75
A
GLU
76
n
75
GLU
76
A
PRO
77
n
76
PRO
77
A
GLY
78
n
77
GLY
78
A
THR
79
n
78
THR
79
A
TYR
80
n
79
TYR
80
A
THR
81
n
80
THR
81
A
TYR
82
n
81
TYR
82
A
TYR
83
n
82
TYR
83
A
CYS
84
n
83
CYS
84
A
GLU
85
n
84
GLU
85
A
PRO
86
n
85
PRO
86
A
HIS
87
n
86
HIS
87
A
ARG
88
n
87
ARG
88
A
GLY
89
n
88
GLY
89
A
ALA
90
n
89
ALA
90
A
GLY
91
n
90
GLY
91
A
MET
92
n
91
MET
92
A
VAL
93
n
92
VAL
93
A
GLY
94
n
93
GLY
94
A
LYS
95
n
94
LYS
95
A
VAL
96
n
95
VAL
96
A
VAL
97
n
96
VAL
97
A
VAL
98
n
97
VAL
98
A
GLU
99
n
98
GLU
99
A
author_defined_assembly
2
dimeric
A
HIS
37
A
ND1
HIS
39
1_555
A
CU
275
B
CU
CU
1_555
A
CYS
84
A
SG
CYS
83
1_555
129.6
A
HIS
37
A
ND1
HIS
39
1_555
A
CU
275
B
CU
CU
1_555
A
HIS
87
A
ND1
HIS
86
1_555
105.5
A
CYS
84
A
SG
CYS
83
1_555
A
CU
275
B
CU
CU
1_555
A
HIS
87
A
ND1
HIS
86
1_555
115.3
A
HIS
37
A
ND1
HIS
39
1_555
A
CU
275
B
CU
CU
1_555
A
MET
92
A
SD
MET
91
1_555
85.4
A
CYS
84
A
SG
CYS
83
1_555
A
CU
275
B
CU
CU
1_555
A
MET
92
A
SD
MET
91
1_555
109.1
A
HIS
87
A
ND1
HIS
86
1_555
A
CU
275
B
CU
CU
1_555
A
MET
92
A
SD
MET
91
1_555
106.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
111.8000000000
A
O
ALA
1
A
O
ALA
3
A
N
LYS
28
A
N
LYS
30
A
O
VAL
27
A
O
VAL
29
A
N
SER
72
A
N
SER
71
A
O
VAL
19
A
O
VAL
21
A
N
LYS
95
A
N
LYS
94
A
O
GLY
94
A
O
GLY
93
A
N
TYR
82
A
N
TYR
81
1
A
ASN
32
-112.56
-70.75
PARAMCSDX.PRO
TOPHCSD.PRO
PARAM19.SOL
AMTOPH19.SOL
11.90
0.2200000
0.1670000
0.1670000
2.15
8.0
4173
12.0
91.6
RANDOM
1
RESTRAINED
THROUGHOUT
0.
MOLECULAR REPLACEMENT
PDB ENTRY 1PCY
0.19
8.0
2.15
8.0
75
803
1
0
727
0.013
1.627
27.08
1.148
2.0
2.0
2.5
2.5
2.5
2.5
3.0
3.0
0.2690000
0.1740000
2.30
644
8
94.0
12.72
2.15
20.3
1PCS
4422
2.
0.0650000
1
8.
5.5
92.7
2.15
2.25
8.2
0.0740000
1
5.2
98.0
phasing
AMoRE
refinement
X-PLOR
3.1
data reduction
MOSFLM
data scaling
CCP4
(ROTAVATA)
THE 2.15 A CRYSTAL STRUCTURE OF A TRIPLE MUTANT PLASTOCYANIN FROM THE CYANOBACTERIUM SYNECHOCYSTIS SP. PCC 6803
1
N
N
2
N
N
3
N
N
A
ALA
48
A
ALA
50
HELX_P
A
LEU
55
A
LEU
56
1
1
7
A
GLU
85
A
GLU
84
HELX_P
A
HIS
87
A
HIS
86
5
2
3
metalc
2.032
A
HIS
37
A
ND1
HIS
39
1_555
A
CU
275
B
CU
CU
1_555
metalc
2.254
A
CYS
84
A
SG
CYS
83
1_555
A
CU
275
B
CU
CU
1_555
metalc
2.073
A
HIS
87
A
ND1
HIS
86
1_555
A
CU
275
B
CU
CU
1_555
metalc
2.651
A
MET
92
A
SD
MET
91
1_555
A
CU
275
B
CU
CU
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, PLASTOCYANIN
A
GLU
15
A
GLU
17
1
A
PRO
16
A
PRO
18
-0.08
A
SER
35
A
SER
37
1
A
PRO
36
A
PRO
38
0.12
PLAS_SYNY3
UNP
1
1
P21697
MSKKFLTILAGLLLVVSSFFLSVSPAAAANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAADGVDADT
AAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVVE
29
126
1PCS
-2
99
P21697
A
1
1
98
1
ALA
engineered mutation
ASP
42
1PCS
A
P21697
UNP
72
44
1
ASP
engineered mutation
PRO
47
1PCS
A
P21697
UNP
77
49
1
ALA
engineered mutation
LEU
63
1PCS
A
P21697
UNP
90
62
3
3
parallel
anti-parallel
parallel
anti-parallel
A
ALA
1
A
ALA
3
A
MET
5
A
MET
7
A
GLU
26
A
GLU
28
A
ASN
31
A
ASN
33
A
SER
69
A
SER
68
A
THR
73
A
THR
72
A
THR
18
A
THR
20
A
LYS
22
A
LYS
24
A
VAL
93
A
VAL
92
A
GLU
99
A
GLU
98
A
GLY
78
A
GLY
77
A
TYR
83
A
TYR
82
CU BINDING SITE.
Unknown
4
BINDING SITE FOR RESIDUE CU A 275
A
CU
275
Software
5
A
HIS
37
A
HIS
39
4
1_555
A
HIS
87
A
HIS
86
4
1_555
A
CYS
84
A
CYS
83
4
1_555
A
MET
92
A
MET
91
4
1_555
A
PRO
36
A
PRO
38
5
1_555
A
HIS
37
A
HIS
39
5
1_555
A
CYS
84
A
CYS
83
5
1_555
A
HIS
87
A
HIS
86
5
1_555
A
MET
92
A
MET
91
5
1_555
154
P 32 2 1