0.011364 0.000000 0.000000 0.000000 0.013175 0.000000 0.000000 0.000000 0.019802 0.00000 0.00000 0.00000 THE SIDE CHAINS OF ARG 44, LYS 59, AND LEU 61 HAVE POOR ELECTRON DENSITY, AND THE ATOMIC MODEL INCLUDES ONLY THE CB ATOMS FOR THESE SIDE CHAINS. Louie, G.V. Brownlie, P.D. Lambert, R. Cooper, J.B. Blundell, T.L. Wood, S.P. Warren, M.J. Woodcock, S.C. Jordan, P.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 88.000 75.900 50.500 C2 H4 O2 60.052 ACETIC ACID non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C20 H24 N2 O8 420.413 3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid DIPYRROMETHANE COFACTOR non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 359 33 39 10.1038/359033a0 1522882 Structure of porphobilinogen deaminase reveals a flexible multidomain polymerase with a single catalytic site. 1992 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 33891.805 PORPHOBILINOGEN DEAMINASE 2.5.1.61 1 man polymer 420.413 3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid 1 syn non-polymer 60.052 ACETIC ACID 1 syn non-polymer 18.015 water 249 nat water no no MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVH SMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEG ACQVPIGSYAELIDGEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILAEVYNGDAPA MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVH SMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEG ACQVPIGSYAELIDGEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILAEVYNGDAPA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample 562 Escherichia coli 2.49 50.54 pdbx_database_status struct_conf struct_conf_type software struct_conn software repository Initial release Version format compliance Version format compliance Non-polymer description Derived calculations Other Data collection Derived calculations Refinement description Data collection Refinement description 1 0 1993-10-31 1 1 2008-03-03 1 2 2011-07-13 1 3 2013-09-18 1 4 2017-11-29 1 5 2019-07-17 1 6 2019-08-14 _pdbx_database_status.process_site _software.classification _struct_conn.pdbx_leaving_atom_flag _software.classification Y BNL 1992-11-17 REL REL DPM 3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid ACY ACETIC ACID HOH water DPM 314 2 DPM DPM 314 A ACY 315 3 ACY ACY 315 A HOH 401 4 HOH HOH 401 A HOH 402 4 HOH HOH 402 A HOH 403 4 HOH HOH 403 A HOH 404 4 HOH HOH 404 A HOH 405 4 HOH HOH 405 A HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A HOH 408 4 HOH HOH 408 A HOH 409 4 HOH HOH 409 A HOH 410 4 HOH HOH 410 A HOH 411 4 HOH HOH 411 A HOH 412 4 HOH HOH 412 A HOH 413 4 HOH HOH 413 A HOH 414 4 HOH HOH 414 A HOH 415 4 HOH HOH 415 A HOH 416 4 HOH HOH 416 A HOH 417 4 HOH HOH 417 A HOH 418 4 HOH HOH 418 A HOH 419 4 HOH HOH 419 A HOH 420 4 HOH HOH 420 A HOH 421 4 HOH HOH 421 A HOH 422 4 HOH HOH 422 A HOH 423 4 HOH HOH 423 A HOH 424 4 HOH HOH 424 A HOH 425 4 HOH HOH 425 A HOH 426 4 HOH HOH 426 A HOH 427 4 HOH HOH 427 A HOH 428 4 HOH HOH 428 A HOH 429 4 HOH HOH 429 A HOH 430 4 HOH HOH 430 A HOH 431 4 HOH HOH 431 A HOH 432 4 HOH HOH 432 A HOH 433 4 HOH HOH 433 A HOH 434 4 HOH HOH 434 A HOH 435 4 HOH HOH 435 A HOH 436 4 HOH HOH 436 A HOH 437 4 HOH HOH 437 A HOH 438 4 HOH HOH 438 A HOH 439 4 HOH HOH 439 A HOH 440 4 HOH HOH 440 A HOH 441 4 HOH HOH 441 A HOH 442 4 HOH HOH 442 A HOH 443 4 HOH HOH 443 A HOH 444 4 HOH HOH 444 A HOH 445 4 HOH HOH 445 A HOH 446 4 HOH HOH 446 A HOH 447 4 HOH HOH 447 A HOH 448 4 HOH HOH 448 A HOH 449 4 HOH HOH 449 A HOH 450 4 HOH HOH 450 A HOH 451 4 HOH HOH 451 A HOH 452 4 HOH HOH 452 A HOH 453 4 HOH HOH 453 A HOH 454 4 HOH HOH 454 A HOH 455 4 HOH HOH 455 A HOH 456 4 HOH HOH 456 A HOH 457 4 HOH HOH 457 A HOH 458 4 HOH HOH 458 A HOH 459 4 HOH HOH 459 A HOH 460 4 HOH HOH 460 A HOH 461 4 HOH HOH 461 A HOH 462 4 HOH HOH 462 A HOH 463 4 HOH HOH 463 A HOH 464 4 HOH HOH 464 A HOH 465 4 HOH HOH 465 A HOH 466 4 HOH HOH 466 A HOH 467 4 HOH HOH 467 A HOH 468 4 HOH HOH 468 A HOH 469 4 HOH HOH 469 A HOH 470 4 HOH HOH 470 A HOH 471 4 HOH HOH 471 A HOH 472 4 HOH HOH 472 A HOH 473 4 HOH HOH 473 A HOH 474 4 HOH HOH 474 A HOH 475 4 HOH HOH 475 A HOH 476 4 HOH HOH 476 A HOH 477 4 HOH HOH 477 A HOH 478 4 HOH HOH 478 A HOH 479 4 HOH HOH 479 A HOH 480 4 HOH HOH 480 A HOH 481 4 HOH HOH 481 A HOH 482 4 HOH HOH 482 A HOH 484 4 HOH HOH 484 A HOH 485 4 HOH HOH 485 A HOH 486 4 HOH HOH 486 A HOH 487 4 HOH HOH 487 A HOH 488 4 HOH HOH 488 A HOH 489 4 HOH HOH 489 A HOH 490 4 HOH HOH 490 A HOH 492 4 HOH HOH 492 A HOH 493 4 HOH HOH 493 A HOH 494 4 HOH HOH 494 A HOH 495 4 HOH HOH 495 A HOH 496 4 HOH HOH 496 A HOH 497 4 HOH HOH 497 A HOH 498 4 HOH HOH 498 A HOH 499 4 HOH HOH 499 A HOH 500 4 HOH HOH 500 A HOH 501 4 HOH HOH 501 A HOH 502 4 HOH HOH 502 A HOH 503 4 HOH HOH 503 A HOH 504 4 HOH HOH 504 A HOH 505 4 HOH HOH 505 A HOH 506 4 HOH HOH 506 A HOH 507 4 HOH HOH 507 A HOH 508 4 HOH HOH 508 A HOH 509 4 HOH HOH 509 A HOH 510 4 HOH HOH 510 A HOH 511 4 HOH HOH 511 A HOH 512 4 HOH HOH 512 A HOH 513 4 HOH HOH 513 A HOH 514 4 HOH HOH 514 A HOH 515 4 HOH HOH 515 A HOH 516 4 HOH HOH 516 A HOH 517 4 HOH HOH 517 A HOH 518 4 HOH HOH 518 A HOH 519 4 HOH HOH 519 A HOH 520 4 HOH HOH 520 A HOH 521 4 HOH HOH 521 A HOH 522 4 HOH HOH 522 A HOH 523 4 HOH HOH 523 A HOH 524 4 HOH HOH 524 A HOH 525 4 HOH HOH 525 A HOH 526 4 HOH HOH 526 A HOH 527 4 HOH HOH 527 A HOH 528 4 HOH HOH 528 A HOH 529 4 HOH HOH 529 A HOH 530 4 HOH HOH 530 A HOH 531 4 HOH HOH 531 A HOH 532 4 HOH HOH 532 A HOH 533 4 HOH HOH 533 A HOH 534 4 HOH HOH 534 A HOH 535 4 HOH HOH 535 A HOH 536 4 HOH HOH 536 A HOH 537 4 HOH HOH 537 A HOH 538 4 HOH HOH 538 A HOH 539 4 HOH HOH 539 A HOH 540 4 HOH HOH 540 A HOH 541 4 HOH HOH 541 A HOH 542 4 HOH HOH 542 A HOH 543 4 HOH HOH 543 A HOH 544 4 HOH HOH 544 A HOH 545 4 HOH HOH 545 A HOH 546 4 HOH HOH 546 A HOH 548 4 HOH HOH 548 A HOH 549 4 HOH HOH 549 A HOH 550 4 HOH HOH 550 A HOH 551 4 HOH HOH 551 A HOH 552 4 HOH HOH 552 A HOH 553 4 HOH HOH 553 A HOH 554 4 HOH HOH 554 A HOH 555 4 HOH HOH 555 A HOH 556 4 HOH HOH 556 A HOH 557 4 HOH HOH 557 A HOH 558 4 HOH HOH 558 A HOH 559 4 HOH HOH 559 A HOH 560 4 HOH HOH 560 A HOH 561 4 HOH HOH 561 A HOH 562 4 HOH HOH 562 A HOH 563 4 HOH HOH 563 A HOH 564 4 HOH HOH 564 A HOH 565 4 HOH HOH 565 A HOH 566 4 HOH HOH 566 A HOH 567 4 HOH HOH 567 A HOH 568 4 HOH HOH 568 A HOH 569 4 HOH HOH 569 A HOH 570 4 HOH HOH 570 A HOH 571 4 HOH HOH 571 A HOH 572 4 HOH HOH 572 A HOH 573 4 HOH HOH 573 A HOH 574 4 HOH HOH 574 A HOH 575 4 HOH HOH 575 A HOH 576 4 HOH HOH 576 A HOH 577 4 HOH HOH 577 A HOH 578 4 HOH HOH 578 A HOH 579 4 HOH HOH 579 A HOH 580 4 HOH HOH 580 A HOH 581 4 HOH HOH 581 A HOH 582 4 HOH HOH 582 A HOH 583 4 HOH HOH 583 A HOH 584 4 HOH HOH 584 A HOH 585 4 HOH HOH 585 A HOH 586 4 HOH HOH 586 A HOH 587 4 HOH HOH 587 A HOH 588 4 HOH HOH 588 A HOH 589 4 HOH HOH 589 A HOH 590 4 HOH HOH 590 A HOH 591 4 HOH HOH 591 A HOH 592 4 HOH HOH 592 A HOH 593 4 HOH HOH 593 A HOH 594 4 HOH HOH 594 A HOH 595 4 HOH HOH 595 A HOH 596 4 HOH HOH 596 A HOH 597 4 HOH HOH 597 A HOH 598 4 HOH HOH 598 A HOH 599 4 HOH HOH 599 A HOH 600 4 HOH HOH 600 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 603 4 HOH HOH 603 A HOH 604 4 HOH HOH 604 A HOH 605 4 HOH HOH 605 A HOH 606 4 HOH HOH 606 A HOH 607 4 HOH HOH 607 A HOH 608 4 HOH HOH 608 A HOH 609 4 HOH HOH 609 A HOH 610 4 HOH HOH 610 A HOH 611 4 HOH HOH 611 A HOH 612 4 HOH HOH 612 A HOH 613 4 HOH HOH 613 A HOH 614 4 HOH HOH 614 A HOH 615 4 HOH HOH 615 A HOH 616 4 HOH HOH 616 A HOH 617 4 HOH HOH 617 A HOH 618 4 HOH HOH 618 A HOH 619 4 HOH HOH 619 A HOH 620 4 HOH HOH 620 A HOH 621 4 HOH HOH 621 A HOH 622 4 HOH HOH 622 A HOH 623 4 HOH HOH 623 A HOH 624 4 HOH HOH 624 A HOH 625 4 HOH HOH 625 A HOH 626 4 HOH HOH 626 A HOH 627 4 HOH HOH 627 A HOH 628 4 HOH HOH 628 A HOH 629 4 HOH HOH 629 A HOH 630 4 HOH HOH 630 A HOH 631 4 HOH HOH 631 A HOH 632 4 HOH HOH 632 A HOH 633 4 HOH HOH 633 A HOH 634 4 HOH HOH 634 A HOH 635 4 HOH HOH 635 A HOH 636 4 HOH HOH 636 A HOH 637 4 HOH HOH 637 A HOH 638 4 HOH HOH 638 A HOH 639 4 HOH HOH 639 A HOH 640 4 HOH HOH 640 A HOH 641 4 HOH HOH 641 A HOH 642 4 HOH HOH 642 A HOH 643 4 HOH HOH 643 A HOH 644 4 HOH HOH 644 A HOH 645 4 HOH HOH 645 A HOH 646 4 HOH HOH 646 A HOH 647 4 HOH HOH 647 A HOH 648 4 HOH HOH 648 A HOH 649 4 HOH HOH 649 A HOH 650 4 HOH HOH 650 A HOH 651 4 HOH HOH 651 A HOH 652 4 HOH HOH 652 A n 1 1 A n 2 2 A ASP 3 n 3 ASP 3 A ASN 4 n 4 ASN 4 A VAL 5 n 5 VAL 5 A LEU 6 n 6 LEU 6 A ARG 7 n 7 ARG 7 A ILE 8 n 8 ILE 8 A ALA 9 n 9 ALA 9 A THR 10 n 10 THR 10 A ARG 11 n 11 ARG 11 A GLN 12 n 12 GLN 12 A SER 13 n 13 SER 13 A PRO 14 n 14 PRO 14 A LEU 15 n 15 LEU 15 A ALA 16 n 16 ALA 16 A LEU 17 n 17 LEU 17 A TRP 18 n 18 TRP 18 A GLN 19 n 19 GLN 19 A ALA 20 n 20 ALA 20 A HIS 21 n 21 HIS 21 A TYR 22 n 22 TYR 22 A VAL 23 n 23 VAL 23 A LYS 24 n 24 LYS 24 A ASP 25 n 25 ASP 25 A LYS 26 n 26 LYS 26 A LEU 27 n 27 LEU 27 A MET 28 n 28 MET 28 A ALA 29 n 29 ALA 29 A SER 30 n 30 SER 30 A HIS 31 n 31 HIS 31 A PRO 32 n 32 PRO 32 A GLY 33 n 33 GLY 33 A LEU 34 n 34 LEU 34 A VAL 35 n 35 VAL 35 A VAL 36 n 36 VAL 36 A GLU 37 n 37 GLU 37 A LEU 38 n 38 LEU 38 A VAL 39 n 39 VAL 39 A PRO 40 n 40 PRO 40 A MET 41 n 41 MET 41 A VAL 42 n 42 VAL 42 A THR 43 n 43 THR 43 A ARG 44 n 44 ARG 44 A GLY 45 n 45 GLY 45 A ASP 46 n 46 ASP 46 A VAL 47 n 47 VAL 47 A ILE 48 n 48 ILE 48 A n 49 49 A n 50 50 A n 51 51 A n 52 52 A n 53 53 A n 54 54 A n 55 55 A n 56 56 A n 57 57 A GLY 58 n 58 GLY 58 A LYS 59 n 59 LYS 59 A GLY 60 n 60 GLY 60 A LEU 61 n 61 LEU 61 A PHE 62 n 62 PHE 62 A VAL 63 n 63 VAL 63 A LYS 64 n 64 LYS 64 A GLU 65 n 65 GLU 65 A LEU 66 n 66 LEU 66 A GLU 67 n 67 GLU 67 A VAL 68 n 68 VAL 68 A ALA 69 n 69 ALA 69 A LEU 70 n 70 LEU 70 A LEU 71 n 71 LEU 71 A GLU 72 n 72 GLU 72 A ASN 73 n 73 ASN 73 A ARG 74 n 74 ARG 74 A ALA 75 n 75 ALA 75 A ASP 76 n 76 ASP 76 A ILE 77 n 77 ILE 77 A ALA 78 n 78 ALA 78 A VAL 79 n 79 VAL 79 A HIS 80 n 80 HIS 80 A SER 81 n 81 SER 81 A MET 82 n 82 MET 82 A LYS 83 n 83 LYS 83 A ASP 84 n 84 ASP 84 A VAL 85 n 85 VAL 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A GLU 88 n 88 GLU 88 A PHE 89 n 89 PHE 89 A PRO 90 n 90 PRO 90 A GLN 91 n 91 GLN 91 A GLY 92 n 92 GLY 92 A LEU 93 n 93 LEU 93 A GLY 94 n 94 GLY 94 A LEU 95 n 95 LEU 95 A VAL 96 n 96 VAL 96 A THR 97 n 97 THR 97 A ILE 98 n 98 ILE 98 A CYS 99 n 99 CYS 99 A GLU 100 n 100 GLU 100 A ARG 101 n 101 ARG 101 A GLU 102 n 102 GLU 102 A ASP 103 n 103 ASP 103 A PRO 104 n 104 PRO 104 A ARG 105 n 105 ARG 105 A ASP 106 n 106 ASP 106 A ALA 107 n 107 ALA 107 A PHE 108 n 108 PHE 108 A VAL 109 n 109 VAL 109 A SER 110 n 110 SER 110 A ASN 111 n 111 ASN 111 A ASN 112 n 112 ASN 112 A TYR 113 n 113 TYR 113 A ASP 114 n 114 ASP 114 A SER 115 n 115 SER 115 A LEU 116 n 116 LEU 116 A ASP 117 n 117 ASP 117 A ALA 118 n 118 ALA 118 A LEU 119 n 119 LEU 119 A PRO 120 n 120 PRO 120 A ALA 121 n 121 ALA 121 A GLY 122 n 122 GLY 122 A SER 123 n 123 SER 123 A ILE 124 n 124 ILE 124 A VAL 125 n 125 VAL 125 A GLY 126 n 126 GLY 126 A THR 127 n 127 THR 127 A SER 128 n 128 SER 128 A SER 129 n 129 SER 129 A LEU 130 n 130 LEU 130 A ARG 131 n 131 ARG 131 A ARG 132 n 132 ARG 132 A GLN 133 n 133 GLN 133 A CYS 134 n 134 CYS 134 A GLN 135 n 135 GLN 135 A LEU 136 n 136 LEU 136 A ALA 137 n 137 ALA 137 A GLU 138 n 138 GLU 138 A ARG 139 n 139 ARG 139 A ARG 140 n 140 ARG 140 A PRO 141 n 141 PRO 141 A ASP 142 n 142 ASP 142 A LEU 143 n 143 LEU 143 A ILE 144 n 144 ILE 144 A ILE 145 n 145 ILE 145 A ARG 146 n 146 ARG 146 A SER 147 n 147 SER 147 A LEU 148 n 148 LEU 148 A ARG 149 n 149 ARG 149 A GLY 150 n 150 GLY 150 A ASN 151 n 151 ASN 151 A VAL 152 n 152 VAL 152 A GLY 153 n 153 GLY 153 A THR 154 n 154 THR 154 A ARG 155 n 155 ARG 155 A LEU 156 n 156 LEU 156 A SER 157 n 157 SER 157 A LYS 158 n 158 LYS 158 A LEU 159 n 159 LEU 159 A ASP 160 n 160 ASP 160 A ASN 161 n 161 ASN 161 A GLY 162 n 162 GLY 162 A GLU 163 n 163 GLU 163 A TYR 164 n 164 TYR 164 A ASP 165 n 165 ASP 165 A ALA 166 n 166 ALA 166 A ILE 167 n 167 ILE 167 A ILE 168 n 168 ILE 168 A LEU 169 n 169 LEU 169 A ALA 170 n 170 ALA 170 A VAL 171 n 171 VAL 171 A ALA 172 n 172 ALA 172 A GLY 173 n 173 GLY 173 A LEU 174 n 174 LEU 174 A LYS 175 n 175 LYS 175 A ARG 176 n 176 ARG 176 A LEU 177 n 177 LEU 177 A GLY 178 n 178 GLY 178 A LEU 179 n 179 LEU 179 A GLU 180 n 180 GLU 180 A SER 181 n 181 SER 181 A ARG 182 n 182 ARG 182 A ILE 183 n 183 ILE 183 A ARG 184 n 184 ARG 184 A ALA 185 n 185 ALA 185 A ALA 186 n 186 ALA 186 A LEU 187 n 187 LEU 187 A PRO 188 n 188 PRO 188 A PRO 189 n 189 PRO 189 A GLU 190 n 190 GLU 190 A ILE 191 n 191 ILE 191 A SER 192 n 192 SER 192 A LEU 193 n 193 LEU 193 A PRO 194 n 194 PRO 194 A ALA 195 n 195 ALA 195 A VAL 196 n 196 VAL 196 A GLY 197 n 197 GLY 197 A GLN 198 n 198 GLN 198 A GLY 199 n 199 GLY 199 A ALA 200 n 200 ALA 200 A VAL 201 n 201 VAL 201 A GLY 202 n 202 GLY 202 A ILE 203 n 203 ILE 203 A GLU 204 n 204 GLU 204 A CYS 205 n 205 CYS 205 A ARG 206 n 206 ARG 206 A LEU 207 n 207 LEU 207 A ASP 208 n 208 ASP 208 A ASP 209 n 209 ASP 209 A SER 210 n 210 SER 210 A ARG 211 n 211 ARG 211 A THR 212 n 212 THR 212 A ARG 213 n 213 ARG 213 A GLU 214 n 214 GLU 214 A LEU 215 n 215 LEU 215 A LEU 216 n 216 LEU 216 A ALA 217 n 217 ALA 217 A ALA 218 n 218 ALA 218 A LEU 219 n 219 LEU 219 A ASN 220 n 220 ASN 220 A HIS 221 n 221 HIS 221 A HIS 222 n 222 HIS 222 A GLU 223 n 223 GLU 223 A THR 224 n 224 THR 224 A ALA 225 n 225 ALA 225 A LEU 226 n 226 LEU 226 A ARG 227 n 227 ARG 227 A VAL 228 n 228 VAL 228 A THR 229 n 229 THR 229 A ALA 230 n 230 ALA 230 A GLU 231 n 231 GLU 231 A ARG 232 n 232 ARG 232 A ALA 233 n 233 ALA 233 A MET 234 n 234 MET 234 A ASN 235 n 235 ASN 235 A THR 236 n 236 THR 236 A ARG 237 n 237 ARG 237 A LEU 238 n 238 LEU 238 A GLU 239 n 239 GLU 239 A GLY 240 n 240 GLY 240 A ALA 241 n 241 ALA 241 A CYS 242 n 242 CYS 242 A GLN 243 n 243 GLN 243 A VAL 244 n 244 VAL 244 A PRO 245 n 245 PRO 245 A ILE 246 n 246 ILE 246 A GLY 247 n 247 GLY 247 A SER 248 n 248 SER 248 A TYR 249 n 249 TYR 249 A ALA 250 n 250 ALA 250 A GLU 251 n 251 GLU 251 A LEU 252 n 252 LEU 252 A ILE 253 n 253 ILE 253 A ASP 254 n 254 ASP 254 A GLY 255 n 255 GLY 255 A GLU 256 n 256 GLU 256 A ILE 257 n 257 ILE 257 A TRP 258 n 258 TRP 258 A LEU 259 n 259 LEU 259 A ARG 260 n 260 ARG 260 A GLY 261 n 261 GLY 261 A LEU 262 n 262 LEU 262 A VAL 263 n 263 VAL 263 A GLY 264 n 264 GLY 264 A ALA 265 n 265 ALA 265 A PRO 266 n 266 PRO 266 A ASP 267 n 267 ASP 267 A GLY 268 n 268 GLY 268 A SER 269 n 269 SER 269 A GLN 270 n 270 GLN 270 A ILE 271 n 271 ILE 271 A ILE 272 n 272 ILE 272 A ARG 273 n 273 ARG 273 A GLY 274 n 274 GLY 274 A GLU 275 n 275 GLU 275 A ARG 276 n 276 ARG 276 A ARG 277 n 277 ARG 277 A GLY 278 n 278 GLY 278 A ALA 279 n 279 ALA 279 A PRO 280 n 280 PRO 280 A GLN 281 n 281 GLN 281 A ASP 282 n 282 ASP 282 A ALA 283 n 283 ALA 283 A GLU 284 n 284 GLU 284 A GLN 285 n 285 GLN 285 A MET 286 n 286 MET 286 A GLY 287 n 287 GLY 287 A ILE 288 n 288 ILE 288 A SER 289 n 289 SER 289 A LEU 290 n 290 LEU 290 A ALA 291 n 291 ALA 291 A GLU 292 n 292 GLU 292 A GLU 293 n 293 GLU 293 A LEU 294 n 294 LEU 294 A LEU 295 n 295 LEU 295 A ASN 296 n 296 ASN 296 A ASN 297 n 297 ASN 297 A GLY 298 n 298 GLY 298 A ALA 299 n 299 ALA 299 A ARG 300 n 300 ARG 300 A GLU 301 n 301 GLU 301 A ILE 302 n 302 ILE 302 A LEU 303 n 303 LEU 303 A ALA 304 n 304 ALA 304 A GLU 305 n 305 GLU 305 A VAL 306 n 306 VAL 306 A TYR 307 n 307 TYR 307 A n 308 308 A n 309 309 A n 310 310 A n 311 311 A n 312 312 A n 313 313 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 37 A N GLU 37 A O LEU 6 A O LEU 6 A O ARG 7 A O ARG 7 A N ILE 77 A N ILE 77 A O HIS 80 A O HIS 80 A N GLY 202 A N GLY 202 A O CYS 205 A O CYS 205 A N GLY 94 A N GLY 94 A O ILE 144 A O ILE 144 A N VAL 125 A N VAL 125 A O ILE 124 A O ILE 124 A N ALA 166 A N ALA 166 A N ALA 166 A N ALA 166 A O VAL 109 A O VAL 109 A O ASP 106 A O ASP 106 A N LEU 187 A N LEU 187 A O ILE 253 A O ILE 253 A N GLU 256 A N GLU 256 A N ALA 265 A N ALA 265 A O GLN 270 A O GLN 270 1 A CG ARG 44 A CG ARG 44 1 Y 1 A CD ARG 44 A CD ARG 44 1 Y 1 A NE ARG 44 A NE ARG 44 1 Y 1 A CZ ARG 44 A CZ ARG 44 1 Y 1 A NH1 ARG 44 A NH1 ARG 44 1 Y 1 A NH2 ARG 44 A NH2 ARG 44 1 Y 1 A CG LYS 59 A CG LYS 59 1 Y 1 A CD LYS 59 A CD LYS 59 1 Y 1 A CE LYS 59 A CE LYS 59 1 Y 1 A NZ LYS 59 A NZ LYS 59 1 Y 1 A CG LEU 61 A CG LEU 61 1 Y 1 A CD1 LEU 61 A CD1 LEU 61 1 Y 1 A CD2 LEU 61 A CD2 LEU 61 1 Y 1 A CB ALA 241 A CB ALA 241 1 Y 1 A MET 1 A MET 1 1 Y 1 A LEU 2 A LEU 2 1 Y 1 A LEU 49 A LEU 49 1 Y 1 A ASP 50 A ASP 50 1 Y 1 A THR 51 A THR 51 1 Y 1 A PRO 52 A PRO 52 1 Y 1 A LEU 53 A LEU 53 1 Y 1 A ALA 54 A ALA 54 1 Y 1 A LYS 55 A LYS 55 1 Y 1 A VAL 56 A VAL 56 1 Y 1 A GLY 57 A GLY 57 1 Y 1 A ASN 308 A ASN 308 1 Y 1 A GLY 309 A GLY 309 1 Y 1 A ASP 310 A ASP 310 1 Y 1 A ALA 311 A ALA 311 1 Y 1 A PRO 312 A PRO 312 1 Y 1 A ALA 313 A ALA 313 1 Y 1 A PRO 245 10.16 1 -7.97 0.50 120.30 112.33 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 1 -14.74 1.70 113.30 98.56 A A A CA CB CG MET MET MET 28 28 28 N 1 -14.05 1.60 100.20 86.15 A A A CG SD CE MET MET MET 28 28 28 N 1 12.09 1.80 110.60 122.69 A A A N CA CB LYS LYS LYS 59 59 59 N 1 7.48 0.50 120.30 127.78 A A A NE CZ NH1 ARG ARG ARG 74 74 74 N 1 -3.96 0.50 120.30 116.34 A A A NE CZ NH2 ARG ARG ARG 74 74 74 N 1 10.22 0.90 118.30 128.52 A A A CB CG OD1 ASP ASP ASP 84 84 84 N 1 -7.44 0.90 118.30 110.86 A A A CB CG OD2 ASP ASP ASP 84 84 84 N 1 15.38 1.20 123.30 138.68 A A A OE1 CD OE2 GLU GLU GLU 88 88 88 N 1 -13.44 2.00 118.30 104.86 A A A CG CD OE1 GLU GLU GLU 88 88 88 N 1 -11.27 1.80 110.60 99.33 A A A N CA CB GLN GLN GLN 91 91 91 N 1 7.33 0.90 118.30 125.63 A A A CB CG OD1 ASP ASP ASP 103 103 103 N 1 -5.82 0.90 118.30 112.48 A A A CB CG OD2 ASP ASP ASP 103 103 103 N 1 3.38 0.50 120.30 123.68 A A A NE CZ NH2 ARG ARG ARG 105 105 105 N 1 6.61 0.90 118.30 124.91 A A A CB CG OD1 ASP ASP ASP 106 106 106 N 1 -5.50 0.90 118.30 112.80 A A A CB CG OD2 ASP ASP ASP 106 106 106 N 1 -3.65 0.60 121.00 117.35 A A A CB CG CD1 TYR TYR TYR 113 113 113 N 1 6.00 0.90 118.30 124.30 A A A CB CG OD1 ASP ASP ASP 114 114 114 N 1 5.90 0.50 120.30 126.20 A A A NE CZ NH1 ARG ARG ARG 131 131 131 N 1 -4.79 0.50 120.30 115.51 A A A NE CZ NH1 ARG ARG ARG 132 132 132 N 1 -3.24 0.50 120.30 117.06 A A A NE CZ NH1 ARG ARG ARG 139 139 139 N 1 3.02 0.50 120.30 123.32 A A A NE CZ NH2 ARG ARG ARG 149 149 149 N 1 5.14 0.50 120.30 125.44 A A A NE CZ NH2 ARG ARG ARG 155 155 155 N 1 7.89 0.90 118.30 126.19 A A A CB CG OD1 ASP ASP ASP 160 160 160 N 1 -5.54 0.90 118.30 112.76 A A A CB CG OD2 ASP ASP ASP 160 160 160 N 1 6.90 0.60 121.00 127.90 A A A CB CG CD1 TYR TYR TYR 164 164 164 N 1 7.85 0.80 121.30 129.15 A A A CG CD1 CE1 TYR TYR TYR 164 164 164 N 1 7.50 0.90 119.80 127.30 A A A CZ CE2 CD2 TYR TYR TYR 164 164 164 N 1 -5.64 0.50 120.30 114.66 A A A NE CZ NH2 ARG ARG ARG 176 176 176 N 1 7.81 0.50 120.30 128.11 A A A NE CZ NH1 ARG ARG ARG 182 182 182 N 1 -9.77 0.50 120.30 110.53 A A A NE CZ NH2 ARG ARG ARG 182 182 182 N 1 -3.07 0.50 120.30 117.23 A A A NE CZ NH2 ARG ARG ARG 184 184 184 N 1 -4.80 0.50 120.30 115.50 A A A NE CZ NH1 ARG ARG ARG 206 206 206 N 1 8.90 1.40 123.60 132.50 A A A CD NE CZ ARG ARG ARG 211 211 211 N 1 -3.04 0.50 120.30 117.26 A A A NE CZ NH1 ARG ARG ARG 213 213 213 N 1 7.95 1.20 123.30 131.25 A A A OE1 CD OE2 GLU GLU GLU 223 223 223 N 1 9.66 1.40 123.60 133.26 A A A CD NE CZ ARG ARG ARG 232 232 232 N 1 10.45 1.70 113.30 123.75 A A A CA CB CG MET MET MET 234 234 234 N 1 16.50 2.30 121.90 138.40 A A A OD1 CG ND2 ASN ASN ASN 235 235 235 N 1 -6.94 1.10 119.40 112.46 A A A NH1 CZ NH2 ARG ARG ARG 237 237 237 N 1 8.25 0.50 120.30 128.55 A A A NE CZ NH1 ARG ARG ARG 237 237 237 N 1 10.97 1.20 123.30 134.27 A A A OE1 CD OE2 GLU GLU GLU 251 251 251 N 1 -3.59 0.50 120.30 116.71 A A A NE CZ NH1 ARG ARG ARG 276 276 276 N 1 4.72 0.50 120.30 125.02 A A A NE CZ NH2 ARG ARG ARG 276 276 276 N 1 -8.45 1.40 123.60 115.15 A A A CD NE CZ ARG ARG ARG 277 277 277 N 1 -6.79 0.50 120.30 113.51 A A A NE CZ NH1 ARG ARG ARG 277 277 277 N 1 6.20 0.50 120.30 126.50 A A A NE CZ NH2 ARG ARG ARG 277 277 277 N 1 15.44 2.30 121.90 137.34 A A A OD1 CG ND2 ASN ASN ASN 297 297 297 N 1 -13.91 2.00 121.60 107.69 A A A CB CG OD1 ASN ASN ASN 297 297 297 N 1 13.83 2.20 113.40 127.23 A A A CA CB CG GLU GLU GLU 305 305 305 N 1 13.61 1.90 113.40 127.01 A A A CA CB CG TYR TYR TYR 307 307 307 N 1 A A O O HOH HOH 413 506 2.18 1_555 3_546 1 A LYS 59 -103.63 -160.46 1 A THR 127 -172.11 139.69 1 A ALA 241 170.93 -176.21 0.1880000 0.1880000 1.76 1 1.76 249 2527 34 0 2244 0.020 1.87 1.50 2.61 1.80 3.53 2.00 5.30 2.50 model building X-PLOR refinement PROLSQ refinement X-PLOR phasing X-PLOR PORPHOBILINOGEN DEAMINASE (E.C.2.5.1.61) STRUCTURE OF PORPHOBILINOGEN DEAMINASE REVEALS A FLEXIBLE MULTIDOMAIN POLYMERASE WITH A SINGLE CATALYTIC SITE 1 N N 2 N N 3 N N 4 N N A PRO 14 A PRO 14 HELX_P A SER 30 A SER 30 1 1-1 17 A ARG 44 A ARG 44 HELX_P A VAL 47 A VAL 47 1 2A1 4 A LYS 64 A LYS 64 HELX_P A LEU 71 A LEU 71 1 2-1 8 A MET 82 A MET 82 HELX_P A ASP 84 A ASP 84 5 H1 3 A LEU 116 A LEU 116 HELX_P A ALA 118 A ALA 118 5 H2 3 A LEU 130 A LEU 130 HELX_P A ARG 139 A ARG 139 1 1-2 10 A VAL 152 A VAL 152 HELX_P A ASP 160 A ASP 160 1 2-2 9 A VAL 171 A VAL 171 HELX_P A ARG 176 A ARG 176 1 3-2 6 A GLU 180 A GLU 180 HELX_P A ARG 182 A ARG 182 5 H3 3 A PRO 189 A PRO 189 HELX_P A ILE 191 A ILE 191 5 H4 3 A SER 210 A SER 210 HELX_P A ALA 217 A ALA 217 1 4-1 8 A ALA 217 A ALA 217 HELX_P A LEU 219 A LEU 219 5 H5 3 A HIS 222 A HIS 222 HELX_P A LEU 238 A LEU 238 1 1-3 17 A PRO 280 A PRO 280 HELX_P A PRO 280 A PRO 280 5 H6 1 A ALA 283 A ALA 283 HELX_P A ASN 296 A ASN 296 1 2-3 14 A ALA 299 A ALA 299 HELX_P A GLU 305 A GLU 305 1 3-3 7 covale 1.876 none A CYS 242 A SG CYS 242 1_555 A DPM 314 B CHA DPM 1_555 TRANSFERASE PORPHYRIN, TRANSFERASE HEM3_ECOLI UNP 1 1 P06983 1 313 1PDA 1 313 P06983 A 1 1 313 1 GLY CONFLICT ALA 241 1PDA A P06983 UNP 241 241 1 ALA CONFLICT GLY 261 1PDA A P06983 UNP 261 261 5 5 3 parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 35 A VAL 35 A MET 41 A MET 41 A VAL 5 A VAL 5 A THR 10 A THR 10 A ILE 77 A ILE 77 A SER 81 A SER 81 A ALA 200 A ALA 200 A ARG 206 A ARG 206 A LEU 93 A LEU 93 A CYS 99 A CYS 99 A ILE 144 A ILE 144 A ARG 146 A ARG 146 A ILE 124 A ILE 124 A THR 127 A THR 127 A ALA 166 A ALA 166 A ALA 170 A ALA 170 A ARG 105 A ARG 105 A VAL 109 A VAL 109 A ALA 185 A ALA 185 A LEU 187 A LEU 187 A ILE 246 A ILE 246 A ILE 253 A ILE 253 A GLU 256 A GLU 256 A ALA 265 A ALA 265 A GLN 270 A GLN 270 A GLY 278 A GLY 278 Unknown 1 BINDING SITE FOR RESIDUE DPM A 314 Software 17 BINDING SITE FOR RESIDUE ACY A 315 Software 5 A CYS 242 A CYS 242 1 1_555 A ARG 11 A ARG 11 17 1_555 A SER 13 A SER 13 17 1_555 A PHE 62 A PHE 62 17 1_555 A LYS 83 A LYS 83 17 1_555 A ASP 84 A ASP 84 17 1_555 A THR 127 A THR 127 17 1_555 A SER 128 A SER 128 17 1_555 A SER 129 A SER 129 17 1_555 A ARG 131 A ARG 131 17 1_555 A ARG 132 A ARG 132 17 1_555 A ARG 149 A ARG 149 17 1_555 A GLY 150 A GLY 150 17 1_555 A ASN 151 A ASN 151 17 1_555 A VAL 152 A VAL 152 17 1_555 A ARG 155 A ARG 155 17 1_555 A CYS 242 A CYS 242 17 1_555 A HOH 402 D HOH 17 1_555 A LYS 83 A LYS 83 5 1_555 A ARG 132 A ARG 132 5 1_555 A LEU 169 A LEU 169 5 1_555 A ALA 170 A ALA 170 5 1_555 A HOH 468 D HOH 5 1_555 18 P 21 21 2