1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 RESIDUE PRO 4 IS A CIS PROLINE. Llinas, M. Constantine, K.L. Patthy, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 223 281 298 10.1016/0022-2836(92)90731-X 1731074 Refined solution structure and ligand-binding properties of PDC-109 domain b. A collagen-binding type II domain. 1992 US Biochemistry BICHAW 0033 0006-2960 30 1663 Sequence-Specific 1H NMR Assignments and Structural Characterization of Bovine Seminal Fluid Protein Pdc-109 Domain B 1991 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 193 801 The Collagen-Binding Site of Type-II Units of Bovine Seminal Fluid Protein Pdc-109 and Fibronectin 1990 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5379.239 SEMINAL FLUID PROTEIN PDC-109 1 man polymer no no DYAKCVFPFIYGGKKYETCTKIGSMWMSWCSLSPNYDKDRAWKYC DYAKCVFPFIYGGKKYETCTKIGSMWMSWCSLSPNYDKDRAWKYC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos sample 9913 Bos taurus pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conf struct_conf_type repository Initial release Version format compliance Version format compliance Derived calculations Other 1 0 1994-01-31 1 1 2008-03-03 1 2 2011-07-13 1 3 2017-11-29 _pdbx_database_status.process_site Y BNL 1991-10-10 REL REL 1 GUENTERT,BRAUN,WUTHRICH refinement DIANA MADRID refinement MIDGE BRUNGER refinement X-PLOR ASP -4 n 1 ASP -4 A TYR -3 n 2 TYR -3 A ALA -2 n 3 ALA -2 A LYS -1 n 4 LYS -1 A CYS 1 n 5 CYS 1 A VAL 2 n 6 VAL 2 A PHE 3 n 7 PHE 3 A PRO 4 n 8 PRO 4 A PHE 5 n 9 PHE 5 A ILE 6 n 10 ILE 6 A TYR 7 n 11 TYR 7 A GLY 8 n 12 GLY 8 A GLY 9 n 13 GLY 9 A LYS 10 n 14 LYS 10 A LYS 11 n 15 LYS 11 A TYR 12 n 16 TYR 12 A GLU 13 n 17 GLU 13 A THR 14 n 18 THR 14 A CYS 15 n 19 CYS 15 A THR 16 n 20 THR 16 A LYS 17 n 21 LYS 17 A ILE 18 n 22 ILE 18 A GLY 19 n 23 GLY 19 A SER 20 n 24 SER 20 A MET 21 n 25 MET 21 A TRP 23 n 26 TRP 23 A MET 24 n 27 MET 24 A SER 25 n 28 SER 25 A TRP 26 n 29 TRP 26 A CYS 27 n 30 CYS 27 A SER 28 n 31 SER 28 A LEU 29 n 32 LEU 29 A SER 30 n 33 SER 30 A PRO 31 n 34 PRO 31 A ASN 32 n 35 ASN 32 A TYR 33 n 36 TYR 33 A ASP 34 n 37 ASP 34 A LYS 35 n 38 LYS 35 A ASP 36 n 39 ASP 36 A ARG 37 n 40 ARG 37 A ALA 38 n 41 ALA 38 A TRP 39 n 42 TRP 39 A LYS 40 n 43 LYS 40 A TYR 41 n 44 TYR 41 A CYS 42 n 45 CYS 42 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 5 A N PHE 9 A O TYR 12 A O TYR 16 A N CYS 27 A N CYS 30 A O LYS 40 A O LYS 43 1 A ARG 37 0.304 SIDE CHAIN 1 -6.47 1.00 110.10 103.63 A A A CG CD1 NE1 TRP TRP TRP 23 23 23 N 1 5.41 0.90 109.00 114.41 A A A CD1 NE1 CE2 TRP TRP TRP 23 23 23 N 1 9.16 1.10 130.40 139.56 A A A NE1 CE2 CZ2 TRP TRP TRP 23 23 23 N 1 -7.01 1.00 107.30 100.29 A A A NE1 CE2 CD2 TRP TRP TRP 23 23 23 N 1 5.02 0.80 106.30 111.32 A A A CD1 CG CD2 TRP TRP TRP 26 26 26 N 1 -7.50 1.00 110.10 102.60 A A A CG CD1 NE1 TRP TRP TRP 26 26 26 N 1 5.40 0.90 109.00 114.40 A A A CD1 NE1 CE2 TRP TRP TRP 26 26 26 N 1 10.27 1.10 130.40 140.67 A A A NE1 CE2 CZ2 TRP TRP TRP 26 26 26 N 1 -7.38 1.00 107.30 99.92 A A A NE1 CE2 CD2 TRP TRP TRP 26 26 26 N 1 -5.99 0.90 133.90 127.91 A A A CG CD2 CE3 TRP TRP TRP 26 26 26 N 1 4.85 0.80 106.30 111.15 A A A CD1 CG CD2 TRP TRP TRP 39 39 39 N 1 -6.96 1.00 110.10 103.14 A A A CG CD1 NE1 TRP TRP TRP 39 39 39 N 1 9.89 1.10 130.40 140.29 A A A NE1 CE2 CZ2 TRP TRP TRP 39 39 39 N 1 -7.37 1.00 107.30 99.93 A A A NE1 CE2 CD2 TRP TRP TRP 39 39 39 N 1 -5.56 0.90 133.90 128.34 A A A CG CD2 CE3 TRP TRP TRP 39 39 39 N 1 A A CG CD2 TRP TRP 23 23 -0.110 0.017 1.432 1.322 N 1 A A CG CD2 TRP TRP 26 26 -0.132 0.017 1.432 1.300 N 1 A A CG CD2 TRP TRP 39 39 -0.121 0.017 1.432 1.311 N 1 A LYS -1 -137.95 -49.70 1 A CYS 1 -169.92 115.93 1 A VAL 2 -93.86 -79.30 1 A PHE 3 72.94 140.52 1 A LYS 11 71.84 127.15 1 A GLU 13 -119.03 -83.56 1 A CYS 15 -59.24 177.33 1 A ILE 18 38.91 40.60 1 A SER 20 -80.36 -136.20 1 A TRP 23 35.94 37.05 1 A MET 24 -160.01 -136.21 1 A SER 25 172.48 -178.13 1 A TYR 33 -94.15 -72.61 1 A ASP 34 47.66 7.86 1 A LYS 35 91.36 1.98 1 A ARG 37 32.98 35.01 1 A ALA 38 -84.75 30.22 model building X-PLOR refinement X-PLOR phasing X-PLOR SEMINAL FLUID PROTEIN PDC-109 (DOMAIN B) (NMR, BEST STRUCTURE) REFINED SOLUTION STRUCTURE AND LIGAND-BINDING PROPERTIES OF PDC-109 DOMAIN B. A COLLAGEN-BINDING TYPE II DOMAIN 1 Y N A TYR 7 A TYR 11 HELX_P A LYS 10 A LYS 14 5 1 4 disulf 2.019 A CYS 1 A SG CYS 5 1_555 A CYS 27 A SG CYS 30 1_555 disulf 2.029 A CYS 15 A SG CYS 19 1_555 A CYS 42 A SG CYS 45 1_555 COLLAGEN-BINDING TYPE II DOMAIN COLLAGEN-BINDING TYPE II DOMAIN A PHE 3 A PHE 7 1 A PRO 4 A PRO 8 -1.70 SFP1_BOVIN UNP 1 1 P02784 MALQLGLFLIWAGVSVFLQLDPVNGDQDEGVSTEPTQDGPAELPEDEECVFPFVYRNRKHFDCTVHGSLFPWCSLDADYV GRWKYCAQRDYAKCVFPFIYGGKKYETCTKIGSMWMSWCSLSPNYDKDRAWKYC 90 134 1PDC -4 42 P02784 A 1 1 45 2 2 anti-parallel anti-parallel A PHE 5 A PHE 9 A TYR 7 A TYR 11 A LYS 10 A LYS 14 A TYR 12 A TYR 16 A SER 25 A SER 28 A SER 28 A SER 31 A TRP 39 A TRP 42 A CYS 42 A CYS 45 Unknown 5 A TYR 7 A TYR 11 5 1_555 A TRP 26 A TRP 29 5 1_555 A TYR 33 A TYR 36 5 1_555 A ASP 34 A ASP 37 5 1_555 A TRP 39 A TRP 42 5 1_555 1 P 1