1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
RESIDUE PRO 4 IS A CIS PROLINE.
Llinas, M.
Constantine, K.L.
Patthy, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
223
281
298
10.1016/0022-2836(92)90731-X
1731074
Refined solution structure and ligand-binding properties of PDC-109 domain b. A collagen-binding type II domain.
1992
US
Biochemistry
BICHAW
0033
0006-2960
30
1663
Sequence-Specific 1H NMR Assignments and Structural Characterization of Bovine Seminal Fluid Protein Pdc-109 Domain B
1991
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
193
801
The Collagen-Binding Site of Type-II Units of Bovine Seminal Fluid Protein Pdc-109 and Fibronectin
1990
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
5379.239
SEMINAL FLUID PROTEIN PDC-109
1
man
polymer
no
no
DYAKCVFPFIYGGKKYETCTKIGSMWMSWCSLSPNYDKDRAWKYC
DYAKCVFPFIYGGKKYETCTKIGSMWMSWCSLSPNYDKDRAWKYC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
sample
9913
Bos taurus
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conf
struct_conf_type
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
1
0
1994-01-31
1
1
2008-03-03
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1991-10-10
REL
REL
1
GUENTERT,BRAUN,WUTHRICH
refinement
DIANA
MADRID
refinement
MIDGE
BRUNGER
refinement
X-PLOR
ASP
-4
n
1
ASP
-4
A
TYR
-3
n
2
TYR
-3
A
ALA
-2
n
3
ALA
-2
A
LYS
-1
n
4
LYS
-1
A
CYS
1
n
5
CYS
1
A
VAL
2
n
6
VAL
2
A
PHE
3
n
7
PHE
3
A
PRO
4
n
8
PRO
4
A
PHE
5
n
9
PHE
5
A
ILE
6
n
10
ILE
6
A
TYR
7
n
11
TYR
7
A
GLY
8
n
12
GLY
8
A
GLY
9
n
13
GLY
9
A
LYS
10
n
14
LYS
10
A
LYS
11
n
15
LYS
11
A
TYR
12
n
16
TYR
12
A
GLU
13
n
17
GLU
13
A
THR
14
n
18
THR
14
A
CYS
15
n
19
CYS
15
A
THR
16
n
20
THR
16
A
LYS
17
n
21
LYS
17
A
ILE
18
n
22
ILE
18
A
GLY
19
n
23
GLY
19
A
SER
20
n
24
SER
20
A
MET
21
n
25
MET
21
A
TRP
23
n
26
TRP
23
A
MET
24
n
27
MET
24
A
SER
25
n
28
SER
25
A
TRP
26
n
29
TRP
26
A
CYS
27
n
30
CYS
27
A
SER
28
n
31
SER
28
A
LEU
29
n
32
LEU
29
A
SER
30
n
33
SER
30
A
PRO
31
n
34
PRO
31
A
ASN
32
n
35
ASN
32
A
TYR
33
n
36
TYR
33
A
ASP
34
n
37
ASP
34
A
LYS
35
n
38
LYS
35
A
ASP
36
n
39
ASP
36
A
ARG
37
n
40
ARG
37
A
ALA
38
n
41
ALA
38
A
TRP
39
n
42
TRP
39
A
LYS
40
n
43
LYS
40
A
TYR
41
n
44
TYR
41
A
CYS
42
n
45
CYS
42
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
5
A
N
PHE
9
A
O
TYR
12
A
O
TYR
16
A
N
CYS
27
A
N
CYS
30
A
O
LYS
40
A
O
LYS
43
1
A
ARG
37
0.304
SIDE CHAIN
1
-6.47
1.00
110.10
103.63
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
23
23
23
N
1
5.41
0.90
109.00
114.41
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
23
23
23
N
1
9.16
1.10
130.40
139.56
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
23
23
23
N
1
-7.01
1.00
107.30
100.29
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
23
23
23
N
1
5.02
0.80
106.30
111.32
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
26
26
26
N
1
-7.50
1.00
110.10
102.60
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
26
26
26
N
1
5.40
0.90
109.00
114.40
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
26
26
26
N
1
10.27
1.10
130.40
140.67
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
26
26
26
N
1
-7.38
1.00
107.30
99.92
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
26
26
26
N
1
-5.99
0.90
133.90
127.91
A
A
A
CG
CD2
CE3
TRP
TRP
TRP
26
26
26
N
1
4.85
0.80
106.30
111.15
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
39
39
39
N
1
-6.96
1.00
110.10
103.14
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
39
39
39
N
1
9.89
1.10
130.40
140.29
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
39
39
39
N
1
-7.37
1.00
107.30
99.93
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
39
39
39
N
1
-5.56
0.90
133.90
128.34
A
A
A
CG
CD2
CE3
TRP
TRP
TRP
39
39
39
N
1
A
A
CG
CD2
TRP
TRP
23
23
-0.110
0.017
1.432
1.322
N
1
A
A
CG
CD2
TRP
TRP
26
26
-0.132
0.017
1.432
1.300
N
1
A
A
CG
CD2
TRP
TRP
39
39
-0.121
0.017
1.432
1.311
N
1
A
LYS
-1
-137.95
-49.70
1
A
CYS
1
-169.92
115.93
1
A
VAL
2
-93.86
-79.30
1
A
PHE
3
72.94
140.52
1
A
LYS
11
71.84
127.15
1
A
GLU
13
-119.03
-83.56
1
A
CYS
15
-59.24
177.33
1
A
ILE
18
38.91
40.60
1
A
SER
20
-80.36
-136.20
1
A
TRP
23
35.94
37.05
1
A
MET
24
-160.01
-136.21
1
A
SER
25
172.48
-178.13
1
A
TYR
33
-94.15
-72.61
1
A
ASP
34
47.66
7.86
1
A
LYS
35
91.36
1.98
1
A
ARG
37
32.98
35.01
1
A
ALA
38
-84.75
30.22
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
SEMINAL FLUID PROTEIN PDC-109 (DOMAIN B) (NMR, BEST STRUCTURE)
REFINED SOLUTION STRUCTURE AND LIGAND-BINDING PROPERTIES OF PDC-109 DOMAIN B. A COLLAGEN-BINDING TYPE II DOMAIN
1
Y
N
A
TYR
7
A
TYR
11
HELX_P
A
LYS
10
A
LYS
14
5
1
4
disulf
2.019
A
CYS
1
A
SG
CYS
5
1_555
A
CYS
27
A
SG
CYS
30
1_555
disulf
2.029
A
CYS
15
A
SG
CYS
19
1_555
A
CYS
42
A
SG
CYS
45
1_555
COLLAGEN-BINDING TYPE II DOMAIN
COLLAGEN-BINDING TYPE II DOMAIN
A
PHE
3
A
PHE
7
1
A
PRO
4
A
PRO
8
-1.70
SFP1_BOVIN
UNP
1
1
P02784
MALQLGLFLIWAGVSVFLQLDPVNGDQDEGVSTEPTQDGPAELPEDEECVFPFVYRNRKHFDCTVHGSLFPWCSLDADYV
GRWKYCAQRDYAKCVFPFIYGGKKYETCTKIGSMWMSWCSLSPNYDKDRAWKYC
90
134
1PDC
-4
42
P02784
A
1
1
45
2
2
anti-parallel
anti-parallel
A
PHE
5
A
PHE
9
A
TYR
7
A
TYR
11
A
LYS
10
A
LYS
14
A
TYR
12
A
TYR
16
A
SER
25
A
SER
28
A
SER
28
A
SER
31
A
TRP
39
A
TRP
42
A
CYS
42
A
CYS
45
Unknown
5
A
TYR
7
A
TYR
11
5
1_555
A
TRP
26
A
TRP
29
5
1_555
A
TYR
33
A
TYR
36
5
1_555
A
ASP
34
A
ASP
37
5
1_555
A
TRP
39
A
TRP
42
5
1_555
1
P 1