1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Eriksson, M.
Nielsen, P.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C11 H16 N7 O3 1
294.290
2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE
peptide-like
C10 H16 N5 O4 1
270.265
2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE
peptide-like
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C11 H16 N7 O4 1
310.289
2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE
peptide-like
H2 N
16.023
AMINO GROUP
non-polymer
C11 H17 N4 O5 1
285.276
2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE
peptide-like
N
1
N
C
N
2
N
C
N
3
N
O
N
4
N
C
N
5
N
C
N
6
N
O
N
7
N
O
N
8
N
N
N
9
N
C
N
10
N
C
N
11
N
N
Y
12
N
N
Y
13
N
C
Y
14
N
N
Y
15
N
C
Y
16
N
C
N
17
N
N
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
C
N
43
N
O
N
44
N
O
N
45
N
N
N
46
N
C
N
47
N
C
N
48
N
N
N
49
N
N
N
50
N
C
N
51
N
N
N
52
N
C
N
53
N
C
N
54
N
C
N
55
N
O
N
56
N
N
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
N
C
N
84
R
C
Y
85
N
N
Y
86
N
C
Y
87
N
N
Y
88
N
C
Y
89
N
C
N
90
N
N
Y
91
N
N
Y
92
N
C
Y
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
P
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
C
N
115
R
C
N
116
N
O
N
117
S
C
N
118
N
O
N
119
N
C
N
120
R
C
N
121
N
N
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
C
N
126
N
N
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
O
N
144
N
P
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
C
N
149
R
C
N
150
N
O
N
151
S
C
N
152
N
O
N
153
N
C
N
154
R
C
Y
155
N
N
Y
156
N
C
Y
157
N
N
Y
158
N
C
N
159
N
C
N
160
N
O
N
161
N
N
N
162
N
C
N
163
N
N
N
164
N
N
Y
165
N
C
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
O
N
181
N
P
N
182
N
O
N
183
N
O
N
184
N
O
N
185
N
C
N
186
R
C
N
187
N
O
N
188
S
C
N
189
N
O
N
190
N
C
N
191
R
C
N
192
N
N
N
193
N
C
N
194
N
O
N
195
N
N
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
O
N
223
N
N
N
224
N
C
N
225
N
C
N
226
N
N
Y
227
N
N
Y
228
N
C
Y
229
N
N
Y
230
N
C
N
231
N
C
N
232
N
O
N
233
N
N
N
234
N
C
N
235
N
N
N
236
N
N
Y
237
N
C
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
N
H
N
256
N
H
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
O
N
264
N
N
N
265
N
C
N
266
N
C
N
267
N
N
N
268
N
N
N
269
N
C
N
270
N
C
N
271
N
O
N
272
N
N
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
Y
102
N
sing
Y
103
N
doub
N
104
N
sing
Y
105
N
doub
N
106
N
sing
N
107
N
sing
Y
108
N
sing
Y
109
N
doub
N
110
N
sing
Y
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
Y
170
N
sing
Y
171
N
sing
Y
172
N
doub
N
173
N
sing
Y
174
N
sing
N
175
N
sing
Y
176
N
doub
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
sing
Y
247
N
sing
Y
248
N
doub
N
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
3
410
413
10.1038/nsb0596-410
8612069
Solution structure of a peptide nucleic acid-DNA duplex.
1996
US
Biochemistry
BICHAW
0033
0006-2960
33
9820
Structural Characterization of Pna-DNA Duplexes by NMR. Evidence for DNA in a B-Like Conformation
1994
10.2210/pdb1pdt/pdb
pdb_00001pdt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2435.631
DNA (5'-D(*GP*AP*CP*AP*TP*AP*GP*C)-3'
1
syn
polymer
PNA-DNA DUPLEX
2120.155
PEPTIDE NUCLEIC ACID (COOH-P(*G*C*T*A*T*G*T*C)-NH2)
1
syn
polymer
PNA
no
no
(DG)(DA)(DC)(DA)(DT)(DA)(DG)(DC)
GACATAGC
A
polydeoxyribonucleotide
no
yes
(GPN)(CPN)(TPN)(APN)(TPN)(GPN)(TPN)(CPN)(NH2)
XXXXXXXXX
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
15.617
1
19
A
1
B
16
-1.845
A_DG1:CPN16_B
1
15.050
-0.745
0.277
-0.311
17.882
1
20
A
2
B
15
-4.890
A_DA2:TPN15_B
2
-9.948
-0.076
-0.297
-0.118
20.844
1
19
A
3
B
14
-2.134
A_DC3:GPN14_B
3
-5.040
0.673
-0.455
-0.249
16.845
1
20
A
4
B
13
-2.221
A_DA4:TPN13_B
4
-4.901
0.304
-0.038
-0.128
14.225
1
20
A
5
B
12
-8.447
A_DT5:APN12_B
5
5.775
-0.352
-0.355
-0.070
8.040
1
20
A
6
B
11
-1.613
A_DA6:TPN11_B
6
-4.137
0.490
-0.047
-0.130
-5.812
1
19
A
7
B
10
0.159
A_DG7:CPN10_B
7
-15.283
-0.324
-0.301
-0.185
37.293
1
19
A
8
B
9
-1.239
A_DC8:GPN9_B
8
-25.743
0.671
-0.435
-0.147
3.422
32.530
A
A
1
2
-7.058
B
B
16
15
3.243
-3.939
-0.411
-2.136
AA_DG1DA2:TPN15CPN16_BB
1
2.984
-5.347
32.163
-3.109
1.269
3.098
30.186
A
A
2
3
5.845
B
B
15
14
3.188
3.031
-0.907
-1.681
AA_DA2DC3:GPN14TPN15_BB
2
-3.941
7.600
29.783
-3.823
0.966
1.773
29.482
A
A
3
4
32.820
B
B
14
13
3.254
15.368
-1.661
-2.643
AA_DC3DA4:TPN13GPN14_BB
3
-11.708
25.003
22.376
-8.077
1.067
3.084
25.692
A
A
4
5
5.642
B
B
13
12
3.337
2.501
-0.692
-3.002
AA_DA4DT5:APN12TPN13_BB
4
-2.403
5.421
25.460
-7.446
0.889
4.136
32.126
A
A
5
6
-28.887
B
B
12
11
3.745
-15.320
0.146
-1.873
AA_DT5DA6:TPN11APN12_BB
5
-4.037
7.612
28.038
0.164
-1.199
3.815
30.220
A
A
6
7
-5.522
B
B
11
10
3.691
-2.874
-0.834
-1.701
AA_DA6DG7:CPN10TPN11_BB
6
0.623
-1.197
30.080
-2.592
1.746
2.530
29.563
A
A
7
8
-12.836
B
B
10
9
2.331
-6.421
-1.114
-0.206
AA_DG7DC8:GPN9CPN10_BB
7
-7.951
15.896
27.777
0.641
0.888
atom_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_conn
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Other
1
0
1996-10-14
1
1
2008-03-24
1
2
2011-07-13
2
0
2023-11-15
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_label_atom_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1996-03-28
REL
REL
8
BRUNGER
refinement
X-PLOR
3.1
G
1
n
1
DG
1
A
A
2
n
2
DA
2
A
C
3
n
3
DC
3
A
A
4
n
4
DA
4
A
T
5
n
5
DT
5
A
A
6
n
6
DA
6
A
G
7
n
7
DG
7
A
C
8
n
8
DC
8
A
GPN
9
n
1
GPN
9
B
CPN
10
n
2
CPN
10
B
TPN
11
n
3
TPN
11
B
APN
12
n
4
APN
12
B
TPN
13
n
5
TPN
13
B
GPN
14
n
6
GPN
14
B
TPN
15
n
7
TPN
15
B
CPN
16
n
8
CPN
16
B
NH2
17
n
9
NH2
17
B
author_defined_assembly
2
dimeric
B
GPN
9
B
GPN
1
DG
B
CPN
10
B
CPN
2
DC
B
TPN
11
B
TPN
3
DT
B
APN
12
B
APN
4
DA
B
TPN
13
B
TPN
5
DT
B
GPN
14
B
GPN
6
DG
B
TPN
15
B
TPN
7
DT
B
CPN
16
B
CPN
8
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
B
O4'
HN1
DC
NH2
3
17
1.54
3
A
B
O4'
HN1
DC
NH2
3
17
1.54
5
A
B
O4'
HN2
DC
NH2
3
17
1.51
7
A
B
O4'
HN2
DC
NH2
3
17
1.52
2
A
DG
7
0.052
SIDE CHAIN
4
A
DG
7
0.052
SIDE CHAIN
6
A
DG
7
0.049
SIDE CHAIN
7
A
DA
4
0.053
SIDE CHAIN
8
A
DG
7
0.054
SIDE CHAIN
1
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
2.88
0.30
108.30
111.18
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
2.47
0.30
108.30
110.77
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
3.88
0.30
108.30
112.18
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
2.69
0.30
108.30
110.99
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
-4.02
0.60
122.90
118.88
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
1
3.07
0.30
108.30
111.37
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
2.01
0.30
108.30
110.31
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
2
3.24
0.30
108.30
111.54
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
2
2.70
0.30
108.30
111.00
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
2
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
2
3.68
0.30
108.30
111.98
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
2
3.62
0.30
108.30
111.92
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
2
-4.01
0.60
122.90
118.89
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
2
3.01
0.30
108.30
111.31
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
2
3.50
0.30
108.30
111.80
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
2
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
3
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
3
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
3
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
3
3.93
0.30
108.30
112.23
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
3
2.90
0.30
108.30
111.20
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
3
-3.99
0.60
122.90
118.91
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
3
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
3
1.95
0.30
108.30
110.25
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
3
2.96
0.30
108.30
111.26
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
4
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
4
2.83
0.30
108.30
111.13
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
4
2.38
0.30
108.30
110.68
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
4
3.53
0.30
108.30
111.83
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
4
3.62
0.30
108.30
111.92
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
4
-3.98
0.60
122.90
118.92
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
4
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
4
3.44
0.30
108.30
111.74
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
4
1.97
0.30
108.30
110.27
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
5
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
5
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
5
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
5
3.93
0.30
108.30
112.23
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
5
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
5
-3.90
0.60
122.90
119.00
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
5
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
5
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
5
3.05
0.30
108.30
111.35
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
6
3.22
0.30
108.30
111.52
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
6
2.61
0.30
108.30
110.91
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
6
2.67
0.30
108.30
110.97
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
6
3.71
0.30
108.30
112.01
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
6
3.71
0.30
108.30
112.01
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
6
-4.02
0.60
122.90
118.88
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
6
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
6
3.54
0.30
108.30
111.84
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
6
2.05
0.30
108.30
110.35
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
7
3.14
0.30
108.30
111.44
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
7
2.72
0.30
108.30
111.02
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
7
2.67
0.30
108.30
110.97
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
7
4.04
0.30
108.30
112.34
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
7
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
7
-4.04
0.60
122.90
118.86
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
7
2.92
0.30
108.30
111.22
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
7
2.02
0.30
108.30
110.32
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
7
2.37
0.30
108.30
110.67
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
8
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
8
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
8
2.44
0.30
108.30
110.74
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
8
3.73
0.30
108.30
112.03
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
8
3.67
0.30
108.30
111.97
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
8
-4.02
0.60
122.90
118.88
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
8
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
8
3.52
0.30
108.30
111.82
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
8
1.98
0.30
108.30
110.28
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
PD235, PNA-DNA DUPLEX, NMR, 8 STRUCTURES
1
N
N
2
N
N
covale
1.314
both
B
GPN
9
B
C
GPN
1
1_555
B
CPN
10
B
N
CPN
2
1_555
covale
1.310
both
B
CPN
10
B
C
CPN
2
1_555
B
TPN
11
B
N
TPN
3
1_555
covale
1.310
both
B
TPN
11
B
C
TPN
3
1_555
B
APN
12
B
N
APN
4
1_555
covale
1.307
both
B
APN
12
B
C
APN
4
1_555
B
TPN
13
B
N
TPN
5
1_555
covale
1.307
both
B
TPN
13
B
C
TPN
5
1_555
B
GPN
14
B
N
GPN
6
1_555
covale
1.307
both
B
GPN
14
B
C
GPN
6
1_555
B
TPN
15
B
N
TPN
7
1_555
covale
1.310
both
B
TPN
15
B
C
TPN
7
1_555
B
CPN
16
B
N
CPN
8
1_555
covale
1.304
both
B
CPN
16
B
C
CPN
8
1_555
B
NH2
17
B
N
NH2
9
1_555
covale
1.092
one
B
CPN
16
B
O
CPN
8
1_555
B
NH2
17
B
N
NH2
9
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
CPN
16
B
N3
CPN
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
CPN
16
B
O2
CPN
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
CPN
16
B
N4
CPN
8
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
B
TPN
15
B
N3
TPN
7
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
B
TPN
15
B
O4
TPN
7
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
GPN
14
B
N1
GPN
6
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
GPN
14
B
O6
GPN
6
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
GPN
14
B
N2
GPN
6
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
TPN
13
B
N3
TPN
5
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
TPN
13
B
O4
TPN
5
1_555
hydrog
WATSON-CRICK
A
DT
5
A
N3
DT
5
1_555
B
APN
12
B
N1
APN
4
1_555
hydrog
WATSON-CRICK
A
DT
5
A
O4
DT
5
1_555
B
APN
12
B
N6
APN
4
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
TPN
11
B
N3
TPN
3
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
TPN
11
B
O4
TPN
3
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
CPN
10
B
N3
CPN
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
CPN
10
B
O2
CPN
2
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
CPN
10
B
N4
CPN
2
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
GPN
9
B
N1
GPN
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
GPN
9
B
O6
GPN
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
GPN
9
B
N2
GPN
1
1_555
PEPTIDE NUCLEIC ACID/DNA
COMPLEX (PEPTIDE NUCLEIC ACID-DNA), NUCLEIC ACID COMPLEX, DUPLEX, HYBRID, PEPTIDE NUCLEIC ACID-DNA complex
1PDT
PDB
1
1PDT
1PDT
PDB
2
1PDT
1
8
1PDT
1
8
1PDT
A
1
1
8
9
17
1PDT
9
17
1PDT
B
2
1
9
BINDING SITE FOR RESIDUE NH2 B 17
B
NH2
17
Software
2
A
DC
3
A
DC
3
2
1_555
B
CPN
16
B
CPN
8
2
1_555
1
P 1