0.006627 0.000000 0.000000 0.000000 0.015504 0.000000 0.000000 0.000000 0.035971 0.00000 0.00000 0.00000 Rodgers, D.W. Harrison, S.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 150.900 64.500 27.800 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N N N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C Y 156 N N Y 157 N C Y 158 N N Y 159 N C N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N N Y 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C N 193 N N N 194 N C N 195 N O N 196 N N N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 N C N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N O N 267 N H N 268 N H N 269 N N N 270 S C N 271 N C N 272 N O N 273 S C N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N C N 297 N C N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C N 318 N C N 319 N C N 320 N C N 321 N N N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C N 366 N C N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N O N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 R C N 397 N O N 398 N C N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N N Y 418 N C Y 419 N C Y 420 N C Y 421 N C Y 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N N N 437 S C N 438 N C N 439 N O N 440 N C N 441 N C N 442 N C N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing Y 344 N doub Y 345 N sing Y 346 N sing N 347 N sing Y 348 N doub N 349 N sing Y 350 N doub N 351 N sing Y 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing Y 413 N doub Y 414 N sing Y 415 N sing N 416 N sing Y 417 N doub Y 418 N sing Y 419 N sing N 420 N sing Y 421 N sing Y 422 N doub N 423 N sing Y 424 N doub N 425 N sing Y 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing UK Structure STRUE6 2005 0969-2126 1 227 240 10.1016/0969-2126(93)90012-6 8081737 The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites. 1993 UK J.Mol.Biol. JMOBAK 0070 0022-2836 232 826 The Phage 434 OR2/R1-69 Complex at 2.5 Angstroms Resolution 1993 US Science SCIEAS 0038 0036-8075 242 889 Recognition of a DNA Operator by the Repressor of Phage 434. A View at High Resolution 1988 10.2210/pdb1per/pdb pdb_00001per 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 6128.986 DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3') 1 syn polymer 6134.031 DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3') 1 syn polymer 7560.542 PROTEIN (434 REPRESSOR) 2 nat polymer 18.015 water 40 nat water no no (DA)(DA)(DG)(DT)(DA)(DC)(DA)(DG)(DT)(DT)(DT)(DT)(DT)(DC)(DT)(DT)(DG)(DT)(DA)(DT) AAGTACAGTTTTTCTTGTAT A polydeoxyribonucleotide no no (DT)(DA)(DT)(DA)(DC)(DA)(DA)(DG)(DA)(DA)(DA)(DA)(DA)(DC)(DT)(DG)(DT)(DA)(DC)(DT) TATACAAGAAAAACTGTACT B polydeoxyribonucleotide no no SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGTSDSNVR SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGTSDSNVR L,R polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lambda-like viruses sample 10712 Phage 434 Enterobacteria phage lambda 2.43 49.47 0.677 1 20 A 2 B 20 -9.946 A_DA2:DT20_B 1 -11.226 1.013 0.009 -0.566 8.147 1 19 A 3 B 19 -9.133 A_DG3:DC19_B 2 -8.774 0.049 0.220 -0.316 -3.527 1 20 A 4 B 18 2.812 A_DT4:DA18_B 3 -5.299 -0.543 0.249 -0.215 -1.896 1 20 A 5 B 17 3.568 A_DA5:DT17_B 4 -2.067 0.164 0.113 -0.175 -10.606 1 19 A 6 B 16 0.772 A_DC6:DG16_B 5 -4.163 0.166 0.521 -0.439 6.793 1 20 A 7 B 15 -10.282 A_DA7:DT15_B 6 -0.425 -0.436 0.514 -0.720 3.229 1 19 A 8 B 14 3.187 A_DG8:DC14_B 7 -13.219 -0.717 -0.233 -0.101 4.353 1 20 A 9 B 13 -3.469 A_DT9:DA13_B 8 -20.546 -0.337 0.144 -0.448 4.068 1 20 A 10 B 12 -4.390 A_DT10:DA12_B 9 -10.536 -0.336 0.392 -0.303 -8.910 1 20 A 11 B 11 -0.550 A_DT11:DA11_B 10 -18.904 -0.156 -0.020 0.149 -0.229 1 A 12 B 10 -4.777 A_DT12:DA10_B 11 -11.083 0.105 -0.042 -0.793 -2.123 1 20 A 13 B 9 -3.481 A_DT13:DA9_B 12 -21.055 -0.115 -0.283 -0.041 -4.517 1 19 A 14 B 8 1.136 A_DC14:DG8_B 13 -4.330 0.073 -0.346 -0.362 -8.802 1 20 A 15 B 7 -0.918 A_DT15:DA7_B 14 -9.753 -0.196 0.276 -0.201 0.702 1 20 A 16 B 6 -1.199 A_DT16:DA6_B 15 3.444 0.215 -0.328 -0.212 -4.376 1 19 A 17 B 5 -5.980 A_DG17:DC5_B 16 -17.720 0.140 -0.277 -0.386 10.916 1 20 A 18 B 4 1.941 A_DT18:DA4_B 17 -3.877 0.724 -0.165 -0.376 3.654 1 20 A 19 B 3 2.130 A_DA19:DT3_B 18 -8.286 0.079 0.349 0.073 2.249 1 20 A 20 B 2 4.109 A_DT20:DA2_B 19 0.094 -0.168 -0.184 0.072 2.885 30.617 A A 2 3 13.622 B B 20 19 3.109 7.130 0.315 -0.628 AA_DA2DG3:DC19DT20_BB 1 0.063 -0.120 29.795 -2.497 -0.585 3.834 33.219 A A 3 4 -4.726 B B 19 18 3.682 -2.692 1.096 -0.737 AA_DG3DT4:DA18DC19_BB 2 4.106 -7.208 32.864 -0.768 -1.124 3.190 40.728 A A 4 5 -1.014 B B 18 17 3.179 -0.705 0.207 -0.331 AA_DT4DA5:DT17DA18_BB 3 3.473 -4.996 40.580 -0.400 0.076 3.678 33.281 A A 5 6 0.779 B B 17 16 3.647 0.443 -0.564 -0.743 AA_DA5DC6:DG16DT17_BB 4 -6.526 11.465 32.650 -1.382 -0.246 2.593 29.393 A A 6 7 3.571 B B 16 15 2.615 1.810 -0.821 -0.895 AA_DC6DA7:DT15DG16_BB 5 -1.463 2.886 29.303 -2.074 1.368 3.732 34.699 A A 7 8 4.382 B B 15 14 3.724 2.606 0.471 -0.148 AA_DA7DG8:DC14DT15_BB 6 3.709 -6.236 34.411 -0.705 -0.140 3.284 35.945 A A 8 9 -0.860 B B 14 13 3.285 -0.530 0.122 -0.406 AA_DG8DT9:DA13DC14_BB 7 -1.244 2.017 35.920 -0.582 -0.376 3.048 40.297 A A 9 10 -5.321 B B 13 12 2.995 -3.657 0.455 -0.434 AA_DT9DT10:DA12DA13_BB 8 3.374 -4.909 40.002 -0.247 -0.307 3.830 34.150 A A 10 11 0.114 B B 12 11 3.837 0.067 -0.562 -0.419 AA_DT10DT11:DA11DA12_BB 9 0.348 -0.593 34.148 -0.725 1.021 2.793 40.740 A A 11 12 -4.180 B B 11 10 2.799 -2.906 -0.010 -0.067 AA_DT11DT12:DA10DA11_BB 10 2.003 -2.881 40.594 0.178 0.203 3.298 33.945 A A 12 13 0.589 B B 10 9 3.303 0.344 -0.086 -0.418 AA_DT12DT13:DA9DA10_BB 11 0.325 -0.556 33.942 -0.772 0.200 3.401 40.954 A A 13 14 -3.492 B B 9 8 3.379 -2.442 0.359 -0.306 AA_DT13DC14:DG8DA9_BB 12 1.455 -2.081 40.860 -0.160 -0.348 3.323 32.429 A A 14 15 10.111 B B 8 7 3.437 5.608 0.150 -0.165 AA_DC14DT15:DA7DG8_BB 13 -3.621 6.528 31.752 -1.326 -0.933 3.153 37.476 A A 15 16 8.672 B B 7 6 3.058 5.541 0.394 0.716 AA_DT15DT16:DA6DA7_BB 14 4.335 -6.784 36.833 0.418 -0.070 3.387 29.926 A A 16 17 16.797 B B 6 5 3.631 8.556 -0.460 -0.404 AA_DT16DG17:DC5DA6_BB 15 -1.097 2.153 28.683 -2.724 0.643 3.040 33.958 A A 17 18 -6.450 B B 5 4 2.997 -3.760 1.127 -0.737 AA_DG17DT18:DA4DC5_BB 16 -0.555 0.952 33.751 -0.704 -2.012 3.520 37.491 A A 18 19 -2.436 B B 4 3 3.504 -1.564 -0.158 -0.393 AA_DT18DA19:DT3DA4_BB 17 -2.151 3.350 37.400 -0.392 -0.057 3.498 32.549 A A 19 20 -4.239 B B 3 2 3.456 -2.374 -0.235 -0.679 AA_DA19DT20:DA2DT3_BB 18 -0.327 0.584 32.463 -0.771 0.359 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1994-01-31 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y BNL 1993-11-09 REL HOH water HOH 2 4 HOH HOH 21 A HOH 4 4 HOH HOH 22 A HOH 5 4 HOH HOH 23 A HOH 9 4 HOH HOH 24 A HOH 13 4 HOH HOH 25 A HOH 14 4 HOH HOH 26 A HOH 18 4 HOH HOH 27 A HOH 20 4 HOH HOH 28 A HOH 6 4 HOH HOH 21 B HOH 7 4 HOH HOH 22 B HOH 11 4 HOH HOH 23 B HOH 17 4 HOH HOH 24 B HOH 21 4 HOH HOH 25 B HOH 34 4 HOH HOH 26 B HOH 37 4 HOH HOH 27 B HOH 38 4 HOH HOH 28 B HOH 39 4 HOH HOH 29 B HOH 40 4 HOH HOH 30 B HOH 1 4 HOH HOH 70 L HOH 3 4 HOH HOH 71 L HOH 8 4 HOH HOH 72 L HOH 12 4 HOH HOH 73 L HOH 22 4 HOH HOH 74 L HOH 23 4 HOH HOH 75 L HOH 25 4 HOH HOH 76 L HOH 26 4 HOH HOH 77 L HOH 27 4 HOH HOH 78 L HOH 28 4 HOH HOH 79 L HOH 10 4 HOH HOH 70 R HOH 15 4 HOH HOH 71 R HOH 16 4 HOH HOH 72 R HOH 19 4 HOH HOH 73 R HOH 24 4 HOH HOH 74 R HOH 29 4 HOH HOH 75 R HOH 30 4 HOH HOH 76 R HOH 31 4 HOH HOH 77 R HOH 32 4 HOH HOH 78 R HOH 33 4 HOH HOH 79 R HOH 35 4 HOH HOH 80 R HOH 36 4 HOH HOH 81 R A 1 n 1 DA 1 A A 2 n 2 DA 2 A G 3 n 3 DG 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A C 6 n 6 DC 6 A A 7 n 7 DA 7 A G 8 n 8 DG 8 A T 9 n 9 DT 9 A T 10 n 10 DT 10 A T 11 n 11 DT 11 A T 12 n 12 DT 12 A T 13 n 13 DT 13 A C 14 n 14 DC 14 A T 15 n 15 DT 15 A T 16 n 16 DT 16 A G 17 n 17 DG 17 A T 18 n 18 DT 18 A A 19 n 19 DA 19 A T 20 n 20 DT 20 A T 1 n 1 DT 1 B A 2 n 2 DA 2 B T 3 n 3 DT 3 B A 4 n 4 DA 4 B C 5 n 5 DC 5 B A 6 n 6 DA 6 B A 7 n 7 DA 7 B G 8 n 8 DG 8 B A 9 n 9 DA 9 B A 10 n 10 DA 10 B A 11 n 11 DA 11 B A 12 n 12 DA 12 B A 13 n 13 DA 13 B C 14 n 14 DC 14 B T 15 n 15 DT 15 B G 16 n 16 DG 16 B T 17 n 17 DT 17 B A 18 n 18 DA 18 B C 19 n 19 DC 19 B T 20 n 20 DT 20 B SER 1 n 1 SER 1 L ILE 2 n 2 ILE 2 L SER 3 n 3 SER 3 L SER 4 n 4 SER 4 L ARG 5 n 5 ARG 5 L VAL 6 n 6 VAL 6 L LYS 7 n 7 LYS 7 L SER 8 n 8 SER 8 L LYS 9 n 9 LYS 9 L ARG 10 n 10 ARG 10 L ILE 11 n 11 ILE 11 L GLN 12 n 12 GLN 12 L LEU 13 n 13 LEU 13 L GLY 14 n 14 GLY 14 L LEU 15 n 15 LEU 15 L ASN 16 n 16 ASN 16 L GLN 17 n 17 GLN 17 L ALA 18 n 18 ALA 18 L GLU 19 n 19 GLU 19 L LEU 20 n 20 LEU 20 L ALA 21 n 21 ALA 21 L GLN 22 n 22 GLN 22 L LYS 23 n 23 LYS 23 L VAL 24 n 24 VAL 24 L GLY 25 n 25 GLY 25 L THR 26 n 26 THR 26 L THR 27 n 27 THR 27 L GLN 28 n 28 GLN 28 L GLN 29 n 29 GLN 29 L SER 30 n 30 SER 30 L ILE 31 n 31 ILE 31 L GLU 32 n 32 GLU 32 L GLN 33 n 33 GLN 33 L LEU 34 n 34 LEU 34 L GLU 35 n 35 GLU 35 L ASN 36 n 36 ASN 36 L GLY 37 n 37 GLY 37 L LYS 38 n 38 LYS 38 L THR 39 n 39 THR 39 L LYS 40 n 40 LYS 40 L ARG 41 n 41 ARG 41 L PRO 42 n 42 PRO 42 L ARG 43 n 43 ARG 43 L PHE 44 n 44 PHE 44 L LEU 45 n 45 LEU 45 L PRO 46 n 46 PRO 46 L GLU 47 n 47 GLU 47 L LEU 48 n 48 LEU 48 L ALA 49 n 49 ALA 49 L SER 50 n 50 SER 50 L ALA 51 n 51 ALA 51 L LEU 52 n 52 LEU 52 L GLY 53 n 53 GLY 53 L VAL 54 n 54 VAL 54 L SER 55 n 55 SER 55 L VAL 56 n 56 VAL 56 L ASP 57 n 57 ASP 57 L TRP 58 n 58 TRP 58 L LEU 59 n 59 LEU 59 L LEU 60 n 60 LEU 60 L ASN 61 n 61 ASN 61 L GLY 62 n 62 GLY 62 L THR 63 n 63 THR 63 L n 64 64 L n 65 65 L n 66 66 L n 67 67 L n 68 68 L n 69 69 L SER 1 n 1 SER 1 R ILE 2 n 2 ILE 2 R SER 3 n 3 SER 3 R SER 4 n 4 SER 4 R ARG 5 n 5 ARG 5 R VAL 6 n 6 VAL 6 R LYS 7 n 7 LYS 7 R SER 8 n 8 SER 8 R LYS 9 n 9 LYS 9 R ARG 10 n 10 ARG 10 R ILE 11 n 11 ILE 11 R GLN 12 n 12 GLN 12 R LEU 13 n 13 LEU 13 R GLY 14 n 14 GLY 14 R LEU 15 n 15 LEU 15 R ASN 16 n 16 ASN 16 R GLN 17 n 17 GLN 17 R ALA 18 n 18 ALA 18 R GLU 19 n 19 GLU 19 R LEU 20 n 20 LEU 20 R ALA 21 n 21 ALA 21 R GLN 22 n 22 GLN 22 R LYS 23 n 23 LYS 23 R VAL 24 n 24 VAL 24 R GLY 25 n 25 GLY 25 R THR 26 n 26 THR 26 R THR 27 n 27 THR 27 R GLN 28 n 28 GLN 28 R GLN 29 n 29 GLN 29 R SER 30 n 30 SER 30 R ILE 31 n 31 ILE 31 R GLU 32 n 32 GLU 32 R GLN 33 n 33 GLN 33 R LEU 34 n 34 LEU 34 R GLU 35 n 35 GLU 35 R ASN 36 n 36 ASN 36 R GLY 37 n 37 GLY 37 R LYS 38 n 38 LYS 38 R THR 39 n 39 THR 39 R LYS 40 n 40 LYS 40 R ARG 41 n 41 ARG 41 R PRO 42 n 42 PRO 42 R ARG 43 n 43 ARG 43 R PHE 44 n 44 PHE 44 R LEU 45 n 45 LEU 45 R PRO 46 n 46 PRO 46 R GLU 47 n 47 GLU 47 R LEU 48 n 48 LEU 48 R ALA 49 n 49 ALA 49 R SER 50 n 50 SER 50 R ALA 51 n 51 ALA 51 R LEU 52 n 52 LEU 52 R GLY 53 n 53 GLY 53 R VAL 54 n 54 VAL 54 R SER 55 n 55 SER 55 R VAL 56 n 56 VAL 56 R ASP 57 n 57 ASP 57 R TRP 58 n 58 TRP 58 R LEU 59 n 59 LEU 59 R LEU 60 n 60 LEU 60 R ASN 61 n 61 ASN 61 R GLY 62 n 62 GLY 62 R THR 63 n 63 THR 63 R n 64 64 R n 65 65 R n 66 66 R n 67 67 R n 68 68 R n 69 69 R author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 L SER 64 C SER 64 1 Y 1 L ASP 65 C ASP 65 1 Y 1 L SER 66 C SER 66 1 Y 1 L ASN 67 C ASN 67 1 Y 1 L VAL 68 C VAL 68 1 Y 1 L ARG 69 C ARG 69 1 Y 1 R SER 64 D SER 64 1 Y 1 R ASP 65 D ASP 65 1 Y 1 R SER 66 D SER 66 1 Y 1 R ASN 67 D ASN 67 1 Y 1 R VAL 68 D VAL 68 1 Y 1 R ARG 69 D ARG 69 1 Y 1 R R OD1 ND2 ASP ASN 57 61 2.07 1 R R OE1 O GLU HOH 32 71 2.17 1 2.26 0.30 108.30 110.56 A A A O4' C1' N9 DA DA DA 2 2 2 N 1 7.24 1.20 119.70 126.94 A A A C3' O3' P DA DA DG 7 7 8 Y 1 -5.96 0.70 108.00 102.04 A A A O4' C1' N1 DC DC DC 14 14 14 N 1 8.09 1.20 119.70 127.79 A A A C3' O3' P DT DT DG 16 16 17 Y 1 2.64 0.30 108.30 110.94 A A A O4' C1' N1 DT DT DT 18 18 18 N 1 3.42 0.30 108.30 111.72 B B B O4' C1' N1 DT DT DT 3 3 3 N 1 2.61 0.30 108.30 110.91 B B B O4' C1' N9 DA DA DA 6 6 6 N 1 -12.13 1.60 120.90 108.77 B B B P O5' C5' DA DA DA 9 9 9 N 1 -13.51 1.60 120.90 107.39 B B B P O5' C5' DA DA DA 11 11 11 N 1 2.22 0.30 108.30 110.52 B B B O4' C1' N9 DA DA DA 12 12 12 N 1 -2.78 0.40 104.50 101.72 B B B O4' C4' C3' DA DA DA 13 13 13 N 1 2.93 0.30 108.30 111.23 B B B O4' C1' N1 DT DT DT 15 15 15 N 1 1.82 0.30 108.30 110.12 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 -5.38 0.80 102.40 97.02 B B B C3' C2' C1' DT DT DT 17 17 17 N 1 3.38 0.30 108.30 111.68 B B B O4' C1' N1 DT DT DT 17 17 17 N 1 -11.10 1.20 119.70 108.60 B B B C3' O3' P DA DA DC 18 18 19 Y 1 -10.91 1.20 119.70 108.79 B B B C3' O3' P DC DC DT 19 19 20 Y 1 -7.74 0.80 102.40 94.66 B B B C3' C2' C1' DT DT DT 20 20 20 N 1 2.94 0.30 108.30 111.24 B B B O4' C1' N1 DT DT DT 20 20 20 N 1 -5.76 0.90 118.30 112.54 L L L CB CG OD2 ASP ASP ASP 57 57 57 N 1 A A O3' C3' DA DA 1 1 -0.037 0.006 1.419 1.382 N 1 A A O3' C3' DA DA 5 5 -0.051 0.006 1.419 1.368 N 1 B B O3' C3' DG DG 8 8 -0.070 0.006 1.419 1.349 N 1 B B O3' C3' DA DA 18 18 -0.038 0.006 1.419 1.381 N 1 A B C2 N3 DA DT 1 1 1.68 1_555 1_545 1 A B N1 O4 DA DT 1 1 1.72 1_555 1_545 1 A B N1 N3 DA DT 1 1 1.77 1_555 1_545 1 A B N1 C4 DA DT 1 1 1.99 1_555 1_545 1 L THR 26 -127.33 -159.01 1 R THR 26 -118.60 -168.40 THE FOLLOWING CLOSE CRYSTAL PACKING CONTACTS BETWEEN DNA CHAINS RELATED BY A TRANSLATION ALONG THE B AXIS ARE OBSERVED: C2 A 1 A - N3 T 1 B DIST= 1.68 N1 A 1 A - O4 T 1 B DIST= 1.72 N1 A 1 A - N3 T 1 B DIST= 1.77 N1 A 1 A - C4 T 1 B DIST= 1.99 0.1870000 2.500 1 1.500 2.500 40 1822 0 814 968 refinement CORELS refinement TNT THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N L SER 1 C SER 1 HELX_P L GLN 12 C GLN 12 1 L1 12 L GLN 17 C GLN 17 HELX_P L LYS 23 C LYS 23 1 L2 7 L GLN 28 C GLN 28 HELX_P L ASN 36 C ASN 36 1 L3 9 L LEU 45 C LEU 45 HELX_P L ALA 51 C ALA 51 1 L4 7 L VAL 56 C VAL 56 HELX_P L ASN 61 C ASN 61 1 L5 6 R SER 1 D SER 1 HELX_P R GLN 12 D GLN 12 1 R1 12 R GLN 17 D GLN 17 HELX_P R LYS 23 D LYS 23 1 R2 7 R GLN 28 D GLN 28 HELX_P R ASN 36 D ASN 36 1 R3 9 R LEU 45 D LEU 45 HELX_P R ALA 51 D ALA 51 1 R4 7 R VAL 56 D VAL 56 HELX_P R ASN 61 D ASN 61 1 R5 6 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 20 B N3 DT 20 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 20 B O4 DT 20 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 19 B N3 DC 19 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 19 B O2 DC 19 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 19 B N4 DC 19 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 18 B N1 DA 18 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 18 B N6 DA 18 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 17 B N3 DT 17 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 17 B O4 DT 17 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 16 B N1 DG 16 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 16 B O6 DG 16 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 16 B N2 DG 16 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 15 B N3 DT 15 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 15 B O4 DT 15 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 14 B N3 DC 14 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 14 B O2 DC 14 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 14 B N4 DC 14 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 9 1_555 B DA 13 B N1 DA 13 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 9 1_555 B DA 13 B N6 DA 13 1_555 hydrog WATSON-CRICK A DT 10 A N3 DT 10 1_555 B DA 12 B N1 DA 12 1_555 hydrog WATSON-CRICK A DT 10 A O4 DT 10 1_555 B DA 12 B N6 DA 12 1_555 hydrog WATSON-CRICK A DT 11 A N3 DT 11 1_555 B DA 11 B N1 DA 11 1_555 hydrog WATSON-CRICK A DT 11 A O4 DT 11 1_555 B DA 11 B N6 DA 11 1_555 hydrog DT-DA PAIR A DT 12 A N3 DT 12 1_555 B DA 10 B N1 DA 10 1_555 hydrog WATSON-CRICK A DT 13 A N3 DT 13 1_555 B DA 9 B N1 DA 9 1_555 hydrog WATSON-CRICK A DT 13 A O4 DT 13 1_555 B DA 9 B N6 DA 9 1_555 hydrog WATSON-CRICK A DC 14 A N3 DC 14 1_555 B DG 8 B N1 DG 8 1_555 hydrog WATSON-CRICK A DC 14 A N4 DC 14 1_555 B DG 8 B O6 DG 8 1_555 hydrog WATSON-CRICK A DC 14 A O2 DC 14 1_555 B DG 8 B N2 DG 8 1_555 hydrog WATSON-CRICK A DT 15 A N3 DT 15 1_555 B DA 7 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 15 A O4 DT 15 1_555 B DA 7 B N6 DA 7 1_555 hydrog WATSON-CRICK A DT 16 A N3 DT 16 1_555 B DA 6 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 16 A O4 DT 16 1_555 B DA 6 B N6 DA 6 1_555 hydrog WATSON-CRICK A DG 17 A N1 DG 17 1_555 B DC 5 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 17 A N2 DG 17 1_555 B DC 5 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 17 A O6 DG 17 1_555 B DC 5 B N4 DC 5 1_555 hydrog WATSON-CRICK A DT 18 A N3 DT 18 1_555 B DA 4 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 18 A O4 DT 18 1_555 B DA 4 B N6 DA 4 1_555 hydrog WATSON-CRICK A DA 19 A N1 DA 19 1_555 B DT 3 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 19 A N6 DA 19 1_555 B DT 3 B O4 DT 3 1_555 hydrog WATSON-CRICK A DT 20 A N3 DT 20 1_555 B DA 2 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 20 A O4 DT 20 1_555 B DA 2 B N6 DA 2 1_555 TRANSCRIPTION/DNA PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX RPC1_BP434 UNP 3 P16117 1PER PDB 1 1PER 1PER PDB 2 1PER 2 70 1PER 1 69 P16117 L 1 1 69 2 70 1PER 1 69 P16117 R 1 1 69 1 20 1PER 1 20 1PER A 2 1 20 1 20 1PER 1 20 1PER B 3 1 20 19 P 21 21 21