1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Liu, D.J.
Day, L.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
O
N
58
N
P
N
59
N
O
N
60
N
O
N
61
N
O
N
62
N
C
N
63
R
C
N
64
N
O
N
65
S
C
N
66
N
O
N
67
N
C
N
68
R
C
N
69
N
N
N
70
N
C
N
71
N
O
N
72
N
N
N
73
N
C
N
74
N
N
N
75
N
C
N
76
N
C
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
C
N
97
N
C
N
98
N
O
N
99
N
N
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
S
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
S
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
O
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
R
C
N
248
N
O
N
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
O
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
doub
Y
261
N
sing
Y
262
N
sing
N
263
N
sing
Y
264
N
doub
N
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
US
Science
SCIEAS
0038
0036-8075
265
671
674
8036516
Pf1 virus structure: helical coat protein and DNA with paraxial phosphates.
1994
10.2210/pdb1pfi/pdb
pdb_00001pfi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
1
1.0
4612.393
MAJOR COAT PROTEIN OF PF1 VIRUS
2
man
polymer
307.197
DNA (5'-D(P*C)-3')
2
man
polymer
no
no
GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA
GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA
A,B
polypeptide(L)
no
no
(DC)
C
C,D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Inovirus
G8P
sample
10871
Pseudomonas phage Pf1
Inovirus
G8P
sample
10871
Pseudomonas phage Pf1
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_struct_oper_list
struct_site
repository
Initial release
Version format compliance
Version format compliance
Other
Data collection
Database references
Derived calculations
Other
1
0
1995-01-26
1
1
2008-03-21
1
2
2011-07-13
1
3
2013-03-27
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.type
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1994-04-06
REL
1
no
1
35
6.100000
131.840000
GLY
1
n
1
GLY
1
A
VAL
2
n
2
VAL
2
A
ILE
3
n
3
ILE
3
A
ASP
4
n
4
ASP
4
A
THR
5
n
5
THR
5
A
SER
6
n
6
SER
6
A
ALA
7
n
7
ALA
7
A
VAL
8
n
8
VAL
8
A
GLU
9
n
9
GLU
9
A
SER
10
n
10
SER
10
A
ALA
11
n
11
ALA
11
A
ILE
12
n
12
ILE
12
A
THR
13
n
13
THR
13
A
ASP
14
n
14
ASP
14
A
GLY
15
n
15
GLY
15
A
GLN
16
n
16
GLN
16
A
GLY
17
n
17
GLY
17
A
ASP
18
n
18
ASP
18
A
MET
19
n
19
MET
19
A
LYS
20
n
20
LYS
20
A
ALA
21
n
21
ALA
21
A
ILE
22
n
22
ILE
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
TYR
25
n
25
TYR
25
A
ILE
26
n
26
ILE
26
A
VAL
27
n
27
VAL
27
A
GLY
28
n
28
GLY
28
A
ALA
29
n
29
ALA
29
A
LEU
30
n
30
LEU
30
A
VAL
31
n
31
VAL
31
A
ILE
32
n
32
ILE
32
A
LEU
33
n
33
LEU
33
A
ALA
34
n
34
ALA
34
A
VAL
35
n
35
VAL
35
A
ALA
36
n
36
ALA
36
A
GLY
37
n
37
GLY
37
A
LEU
38
n
38
LEU
38
A
ILE
39
n
39
ILE
39
A
TYR
40
n
40
TYR
40
A
SER
41
n
41
SER
41
A
MET
42
n
42
MET
42
A
LEU
43
n
43
LEU
43
A
ARG
44
n
44
ARG
44
A
LYS
45
n
45
LYS
45
A
ALA
46
n
46
ALA
46
A
GLY
1
n
1
GLY
1
B
VAL
2
n
2
VAL
2
B
ILE
3
n
3
ILE
3
B
ASP
4
n
4
ASP
4
B
THR
5
n
5
THR
5
B
SER
6
n
6
SER
6
B
ALA
7
n
7
ALA
7
B
VAL
8
n
8
VAL
8
B
GLU
9
n
9
GLU
9
B
SER
10
n
10
SER
10
B
ALA
11
n
11
ALA
11
B
ILE
12
n
12
ILE
12
B
THR
13
n
13
THR
13
B
ASP
14
n
14
ASP
14
B
GLY
15
n
15
GLY
15
B
GLN
16
n
16
GLN
16
B
GLY
17
n
17
GLY
17
B
ASP
18
n
18
ASP
18
B
MET
19
n
19
MET
19
B
LYS
20
n
20
LYS
20
B
ALA
21
n
21
ALA
21
B
ILE
22
n
22
ILE
22
B
GLY
23
n
23
GLY
23
B
GLY
24
n
24
GLY
24
B
TYR
25
n
25
TYR
25
B
ILE
26
n
26
ILE
26
B
VAL
27
n
27
VAL
27
B
GLY
28
n
28
GLY
28
B
ALA
29
n
29
ALA
29
B
LEU
30
n
30
LEU
30
B
VAL
31
n
31
VAL
31
B
ILE
32
n
32
ILE
32
B
LEU
33
n
33
LEU
33
B
ALA
34
n
34
ALA
34
B
VAL
35
n
35
VAL
35
B
ALA
36
n
36
ALA
36
B
GLY
37
n
37
GLY
37
B
LEU
38
n
38
LEU
38
B
ILE
39
n
39
ILE
39
B
TYR
40
n
40
TYR
40
B
SER
41
n
41
SER
41
B
MET
42
n
42
MET
42
B
LEU
43
n
43
LEU
43
B
ARG
44
n
44
ARG
44
B
LYS
45
n
45
LYS
45
B
ALA
46
n
46
ALA
46
B
DC
1
n
1
DC
1
C
DC
1
n
1
DC
1
D
representative helical assembly
140
helical
helical asymmetric unit
4
tetrameric
helical asymmetric unit, std helical frame
4
tetrameric
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
1_555
x,y,z
identity operation
0.00000
0.00000
0.00000
0.15160586
0.98844103
0.00000000
-0.98844103
0.15160586
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-103.70000
0.63526983
-0.77229026
0.00000000
0.77229026
0.63526983
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-97.60000
-0.99912283
0.04187565
0.00000000
-0.04187565
-0.99912283
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-91.50000
0.69766543
0.71642372
0.00000000
-0.71642372
0.69766543
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-85.40000
0.06836354
-0.99766048
0.00000000
0.99766048
0.06836354
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-79.30000
-0.78886961
0.61456060
0.00000000
-0.61456060
-0.78886961
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-73.20000
0.98407174
0.17777180
0.00000000
-0.17777180
0.98407174
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-67.10000
-0.52398591
-0.85172693
0.00000000
0.85172693
-0.52398591
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-61.00000
-0.28501926
0.95852179
0.00000000
-0.95852179
-0.28501926
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-54.90000
0.90423167
-0.42704225
0.00000000
0.42704225
0.90423167
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-48.80000
-0.92132118
-0.38880237
0.00000000
0.38880237
-0.92132118
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-42.70000
0.32490798
0.94574563
0.00000000
-0.94574563
0.32490798
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-36.60000
0.48785966
-0.87292208
0.00000000
0.87292208
0.48785966
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-30.50000
-0.97576423
0.21882451
0.00000000
-0.21882451
-0.97576423
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-24.40000
0.81391277
0.58098710
0.00000000
-0.58098710
0.81391277
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-18.30000
-0.11008126
-0.99392259
0.00000000
0.99392259
-0.11008126
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-12.20000
-0.66705275
0.74501049
0.00000000
-0.74501049
-0.66705275
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
-6.10000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
0.00000000
0.00000000
0.00000000
1.00000000
1_555
x,y,z
identity operation
0.00000
0.00000
0.00000
-0.66705275
-0.74501049
0.00000000
0.74501049
-0.66705275
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
6.10000
-0.11008126
0.99392259
0.00000000
-0.99392259
-0.11008126
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
12.20000
0.81391277
-0.58098710
0.00000000
0.58098710
0.81391277
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
18.30000
-0.97576423
-0.21882451
0.00000000
0.21882451
-0.97576423
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
24.40000
0.48785966
0.87292208
0.00000000
-0.87292208
0.48785966
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
30.50000
0.32490798
-0.94574563
0.00000000
0.94574563
0.32490798
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
36.60000
-0.92132118
0.38880237
0.00000000
-0.38880237
-0.92132118
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
42.70000
0.90423167
0.42704225
0.00000000
-0.42704225
0.90423167
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
48.80000
-0.28501926
-0.95852179
0.00000000
0.95852179
-0.28501926
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
54.90000
-0.52398591
0.85172693
0.00000000
-0.85172693
-0.52398591
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
61.00000
0.98407174
-0.17777180
0.00000000
0.17777180
0.98407174
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
67.10000
-0.78886961
-0.61456060
0.00000000
0.61456060
-0.78886961
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
73.20000
0.06836354
0.99766048
0.00000000
-0.99766048
0.06836354
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
79.30000
0.69766543
-0.71642372
0.00000000
0.71642372
0.69766543
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
85.40000
-0.99912283
-0.04187565
0.00000000
0.04187565
-0.99912283
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
91.50000
0.63526983
0.77229026
0.00000000
-0.77229026
0.63526983
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
97.60000
0.15160586
-0.98844103
0.00000000
0.98844103
0.15160586
0.00000000
0.00000000
0.00000000
1.00000000
helical symmetry operation
0.00000
0.00000
103.70000
1
B
C
HG2
H5
LYS
DC
45
1
0.43
1
A
A
HD11
N
ILE
GLY
22
23
1.22
1
B
B
HD11
N
ILE
GLY
22
23
1.22
1
B
B
O
HG21
ASP
ILE
18
22
1.25
1
A
A
O
HG21
ASP
ILE
18
22
1.25
1
B
B
HA2
HG1
GLY
THR
1
5
1.25
1
A
A
HA2
HG1
GLY
THR
1
5
1.25
1
B
C
CG
H5
LYS
DC
45
1
1.32
1
B
C
HE2
H6
LYS
DC
45
1
1.32
1
B
C
HB2
H41
LYS
DC
45
1
1.34
1
A
A
O
HG23
GLY
THR
1
5
1.36
1
B
B
O
HG23
GLY
THR
1
5
1.36
1
B
B
O
HG13
ASP
VAL
4
8
1.41
1
A
A
O
HG13
ASP
VAL
4
8
1.41
1
B
B
O
HD2
GLY
ASP
15
18
1.42
1
A
A
O
HD2
GLY
ASP
15
18
1.42
1
B
C
HG2
C5
LYS
DC
45
1
1.45
1
A
A
O
HG22
VAL
ILE
8
12
1.49
1
B
B
O
HG22
VAL
ILE
8
12
1.49
1
B
B
O
CG2
GLY
THR
1
5
1.94
1
A
A
O
CG2
GLY
THR
1
5
1.94
1
B
B
O
OD2
GLY
ASP
15
18
2.08
1
A
A
O
OD2
GLY
ASP
15
18
2.08
1
A
A
O
CG2
ASP
ILE
18
22
2.15
1
B
B
O
CG2
ASP
ILE
18
22
2.15
1
B
C
CG
C5
LYS
DC
45
1
2.16
1
A
A
O
OD1
GLY
ASP
15
18
2.18
1
B
B
O
OD1
GLY
ASP
15
18
2.18
1
-5.53
0.90
118.30
112.77
A
A
A
CB
CG
OD2
ASP
ASP
ASP
4
4
4
N
1
-5.61
0.90
118.30
112.69
A
A
A
CB
CG
OD2
ASP
ASP
ASP
14
14
14
N
1
-5.48
0.90
118.30
112.82
A
A
A
CB
CG
OD2
ASP
ASP
ASP
18
18
18
N
1
4.09
0.50
120.30
124.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
44
44
44
N
1
-5.54
0.90
118.30
112.76
B
B
B
CB
CG
OD2
ASP
ASP
ASP
4
4
4
N
1
-5.57
0.90
118.30
112.73
B
B
B
CB
CG
OD2
ASP
ASP
ASP
14
14
14
N
1
-5.48
0.90
118.30
112.82
B
B
B
CB
CG
OD2
ASP
ASP
ASP
18
18
18
N
1
4.12
0.50
120.30
124.42
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
44
44
44
N
1
-14.33
1.50
119.60
105.27
C
C
C
OP1
P
OP2
DC
DC
DC
1
1
1
N
1
2.79
0.30
108.30
111.09
C
C
C
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
-3.51
0.40
120.30
116.79
C
C
C
C6
N1
C2
DC
DC
DC
1
1
1
N
1
3.73
0.50
117.40
121.13
C
C
C
C4
C5
C6
DC
DC
DC
1
1
1
N
1
5.29
0.60
118.90
124.19
C
C
C
N1
C2
O2
DC
DC
DC
1
1
1
N
1
-4.41
0.70
121.90
117.49
C
C
C
N3
C2
O2
DC
DC
DC
1
1
1
N
1
-14.33
1.50
119.60
105.27
D
D
D
OP1
P
OP2
DC
DC
DC
1
1
1
N
1
2.79
0.30
108.30
111.09
D
D
D
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
-3.51
0.40
120.30
116.79
D
D
D
C6
N1
C2
DC
DC
DC
1
1
1
N
1
3.73
0.50
117.40
121.13
D
D
D
C4
C5
C6
DC
DC
DC
1
1
1
N
1
5.29
0.60
118.90
124.19
D
D
D
N1
C2
O2
DC
DC
DC
1
1
1
N
1
-4.41
0.70
121.90
117.49
D
D
D
N3
C2
O2
DC
DC
DC
1
1
1
N
1
A
A
C
N
GLY
VAL
1
2
0.144
0.023
1.336
1.480
Y
1
A
A
C
N
VAL
ILE
2
3
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
ILE
ASP
3
4
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
ASP
THR
4
5
0.146
0.023
1.336
1.482
Y
1
A
A
C
N
THR
SER
5
6
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
SER
ALA
6
7
0.141
0.023
1.336
1.477
Y
1
A
A
C
N
ALA
VAL
7
8
0.140
0.023
1.336
1.476
Y
1
A
A
C
N
VAL
GLU
8
9
0.140
0.023
1.336
1.476
Y
1
A
A
CD
OE2
GLU
GLU
9
9
0.110
0.011
1.252
1.362
N
1
A
A
C
N
GLU
SER
9
10
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
SER
ALA
10
11
0.145
0.023
1.336
1.481
Y
1
A
A
C
N
ALA
ILE
11
12
0.145
0.023
1.336
1.481
Y
1
A
A
C
N
ILE
THR
12
13
0.141
0.023
1.336
1.477
Y
1
A
A
C
N
THR
ASP
13
14
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
ASP
GLY
14
15
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
GLY
GLN
15
16
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
GLN
GLY
16
17
0.141
0.023
1.336
1.477
Y
1
A
A
C
N
GLY
ASP
17
18
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
ASP
MET
18
19
0.141
0.023
1.336
1.477
Y
1
A
A
C
N
MET
LYS
19
20
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
LYS
ALA
20
21
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
ALA
ILE
21
22
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
ILE
GLY
22
23
0.141
0.023
1.336
1.477
Y
1
A
A
C
N
GLY
GLY
23
24
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
GLY
TYR
24
25
0.141
0.023
1.336
1.477
Y
1
A
A
C
N
TYR
ILE
25
26
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
ILE
VAL
26
27
0.144
0.023
1.336
1.480
Y
1
A
A
C
N
VAL
GLY
27
28
0.141
0.023
1.336
1.477
Y
1
A
A
C
N
GLY
ALA
28
29
0.144
0.023
1.336
1.480
Y
1
A
A
C
N
ALA
LEU
29
30
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
LEU
VAL
30
31
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
VAL
ILE
31
32
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
ILE
LEU
32
33
0.146
0.023
1.336
1.482
Y
1
A
A
C
N
LEU
ALA
33
34
0.144
0.023
1.336
1.480
Y
1
A
A
C
N
ALA
VAL
34
35
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
VAL
ALA
35
36
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
ALA
GLY
36
37
0.144
0.023
1.336
1.480
Y
1
A
A
C
N
GLY
LEU
37
38
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
LEU
ILE
38
39
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
ILE
TYR
39
40
0.143
0.023
1.336
1.479
Y
1
A
A
C
N
TYR
SER
40
41
0.144
0.023
1.336
1.480
Y
1
A
A
C
N
SER
MET
41
42
0.144
0.023
1.336
1.480
Y
1
A
A
C
N
MET
LEU
42
43
0.141
0.023
1.336
1.477
Y
1
A
A
C
N
LEU
ARG
43
44
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
ARG
LYS
44
45
0.142
0.023
1.336
1.478
Y
1
A
A
C
N
LYS
ALA
45
46
0.141
0.023
1.336
1.477
Y
1
A
A
C
OXT
ALA
ALA
46
46
0.200
0.019
1.229
1.429
N
1
B
B
C
N
GLY
VAL
1
2
0.144
0.023
1.336
1.480
Y
1
B
B
C
N
VAL
ILE
2
3
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
ILE
ASP
3
4
0.144
0.023
1.336
1.480
Y
1
B
B
C
N
ASP
THR
4
5
0.146
0.023
1.336
1.482
Y
1
B
B
C
N
THR
SER
5
6
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
SER
ALA
6
7
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
ALA
VAL
7
8
0.140
0.023
1.336
1.476
Y
1
B
B
C
N
VAL
GLU
8
9
0.140
0.023
1.336
1.476
Y
1
B
B
CD
OE2
GLU
GLU
9
9
0.111
0.011
1.252
1.363
N
1
B
B
C
N
GLU
SER
9
10
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
SER
ALA
10
11
0.144
0.023
1.336
1.480
Y
1
B
B
C
N
ALA
ILE
11
12
0.145
0.023
1.336
1.481
Y
1
B
B
C
N
ILE
THR
12
13
0.140
0.023
1.336
1.476
Y
1
B
B
C
N
THR
ASP
13
14
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
ASP
GLY
14
15
0.144
0.023
1.336
1.480
Y
1
B
B
C
N
GLY
GLN
15
16
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
GLN
GLY
16
17
0.141
0.023
1.336
1.477
Y
1
B
B
C
N
GLY
ASP
17
18
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
ASP
MET
18
19
0.141
0.023
1.336
1.477
Y
1
B
B
C
N
MET
LYS
19
20
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
LYS
ALA
20
21
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
ALA
ILE
21
22
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
ILE
GLY
22
23
0.141
0.023
1.336
1.477
Y
1
B
B
C
N
GLY
GLY
23
24
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
GLY
TYR
24
25
0.141
0.023
1.336
1.477
Y
1
B
B
C
N
TYR
ILE
25
26
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
ILE
VAL
26
27
0.144
0.023
1.336
1.480
Y
1
B
B
C
N
VAL
GLY
27
28
0.141
0.023
1.336
1.477
Y
1
B
B
C
N
GLY
ALA
28
29
0.145
0.023
1.336
1.481
Y
1
B
B
C
N
ALA
LEU
29
30
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
LEU
VAL
30
31
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
VAL
ILE
31
32
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
ILE
LEU
32
33
0.146
0.023
1.336
1.482
Y
1
B
B
C
N
LEU
ALA
33
34
0.144
0.023
1.336
1.480
Y
1
B
B
C
N
ALA
VAL
34
35
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
VAL
ALA
35
36
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
ALA
GLY
36
37
0.144
0.023
1.336
1.480
Y
1
B
B
C
N
GLY
LEU
37
38
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
LEU
ILE
38
39
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
ILE
TYR
39
40
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
TYR
SER
40
41
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
SER
MET
41
42
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
MET
LEU
42
43
0.141
0.023
1.336
1.477
Y
1
B
B
C
N
LEU
ARG
43
44
0.142
0.023
1.336
1.478
Y
1
B
B
C
N
ARG
LYS
44
45
0.143
0.023
1.336
1.479
Y
1
B
B
C
N
LYS
ALA
45
46
0.141
0.023
1.336
1.477
Y
1
B
B
C
OXT
ALA
ALA
46
46
0.200
0.019
1.229
1.429
N
1
C
C
C5'
C4'
DC
DC
1
1
0.052
0.007
1.512
1.564
N
1
C
C
C4
N4
DC
DC
1
1
0.118
0.009
1.335
1.453
N
1
C
C
N1
C6
DC
DC
1
1
0.154
0.006
1.367
1.521
N
1
C
C
C2
N3
DC
DC
1
1
0.157
0.008
1.353
1.510
N
1
C
C
N3
C4
DC
DC
1
1
-0.044
0.007
1.335
1.291
N
1
C
C
C4
C5
DC
DC
1
1
-0.058
0.008
1.425
1.367
N
1
D
D
C5'
C4'
DC
DC
1
1
0.052
0.007
1.512
1.564
N
1
D
D
C4
N4
DC
DC
1
1
0.118
0.009
1.335
1.453
N
1
D
D
N1
C6
DC
DC
1
1
0.154
0.006
1.367
1.521
N
1
D
D
C2
N3
DC
DC
1
1
0.157
0.008
1.353
1.510
N
1
D
D
N3
C4
DC
DC
1
1
-0.044
0.007
1.335
1.291
N
1
D
D
C4
C5
DC
DC
1
1
-0.058
0.008
1.425
1.367
N
1
A
ILE
3
-65.09
-91.00
1
B
ILE
3
-65.06
-91.01
DATA ARE BASED ON, BUT NOT LIMITED TO, FIBER DIFFRACTION.
3.0
1
3.0
0
682
0
38
644
PF1 VIRUS STRUCTURE: HELICAL COAT PROTEIN AND DNA WITH PARAXIAL PHOSPHATES
1
N
N
1
N
N
2
N
N
2
N
N
A
VAL
2
A
VAL
2
HELX_P
A
GLN
16
A
GLN
16
1
1
15
A
GLN
16
A
GLN
16
HELX_P
A
ALA
46
A
ALA
46
1
2
31
B
VAL
2
B
VAL
2
HELX_P
B
GLN
16
B
GLN
16
1
3
15
B
GLN
16
B
GLN
16
HELX_P
B
ALA
46
B
ALA
46
1
4
31
VIRUS
COMPLEX(VIRAL COAT PROTEIN-DNA), Helical virus, Virus
COATB_BPPF1
UNP
1
1
P03621
MKAMKQRIAKFSPVASFRNLCIAGSVTAATSLPAFAGVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLR
KA
1PFI
PDB
2
1
1PFI
C
37
82
1PFI
1
46
P03621
A
1
1
46
37
82
1PFI
1
46
P03621
B
1
1
46
1
1
1PFI
1
1
1PFI
C
2
1
1
1
1
1PFI
1
1
1PFI
D
2
1
1
BINDING SITE FOR RESIDUE DC C 1
C
DC
1
Software
4
BINDING SITE FOR RESIDUE DC D 1
D
DC
1
Software
2
A
ARG
44
A
ARG
44
4
1_555
B
SER
41
B
SER
41
4
1_555
B
MET
42
B
MET
42
4
1_555
B
LYS
45
B
LYS
45
4
1_555
A
LYS
45
A
LYS
45
2
1_555
B
LYS
45
B
LYS
45
2
1_555
1
P 1