1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Folmer, R.H.A.
Nilges, M.
Konings, R.N.H.
Hilbers, C.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
EMBO J.
EMJODG
0897
0261-4189
14
4132
4142
7556054
Solution structure of the single-stranded DNA binding protein of the filamentous Pseudomonas phage Pf3: similarity to other proteins binding to single-stranded nucleic acids.
1995
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
224
663
Secondary Structure of the Single-Stranded DNA Binding Protein Encoded by Filamentous Phage Pf3 as Determined by NMR
1994
US
J.Virol.
JOVIAM
0825
0022-538X
56
268
Nucleotide Sequence of the Genome of Pf3, an Inc(P)-1 Plasmid-Specific Filamentous Bacteriophage of Pseudomonas Aeruginosa
1985
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
DIMERIC
8903.060
PF3 SINGLE-STRANDED DNA BINDING PROTEIN
F36H
2
man
polymer
PF3 SSDBP
no
no
MNIQITFTDSVRQGTSAKGNPYTFQEGFLHLEDKPHPLQCQFFVESVIPAGSYQVPYRINVNNGRPELAFDFKAMKRA
MNIQITFTDSVRQGTSAKGNPYTFQEGFLHLEDKPHPLQCQFFVESVIPAGSYQVPYRINVNNGRPELAFDFKAMKRA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Inovirus
Escherichia
sample
10872
Pseudomonas phage Pf3
562
Escherichia coli
MC4100
PPF3VF36H
pdbx_database_status
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_assembly_prop
pdbx_struct_oper_list
struct_keywords
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Other
Structure summary
1
0
1997-02-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2019-11-06
_pdbx_database_status.process_site
_pdbx_nmr_spectrometer.manufacturer
_pdbx_nmr_spectrometer.model
_struct_keywords.text
Y
BNL
1996-08-03
REL
REL
OVERALL ENERGY
80
1
13C- AND 15N-EDITED 3D NOESY
HMQC-J
HAHB
HACAHB-COSY
HNHB
13C
15N SPIN-ECHO HSQC
4.4
300
K
30 STRUCTURES WERE CALCULATED USING THE GEOMETRIC FORCE FIELD 'PARALLDHG.PRO'. THESE WERE SUBSEQUENTLY REFINED IN A 7 ANGSTROM SHELL OF WATER MOLECULES USING THE OPLS FORCE FIELD (TOPOPLSXX.PRO) AND AVERAGED. THIS AVERAGED STRUCTURE WAS ENERGY MINIMIZED USING AGAIN 'PARALLDHG.PRO'. THE PROGRAM WAS MODIFIED TO USE FLOATING CHIRALITY. CHIRAL-CENTER RESTRAINT (A**3) : 0.352
BRUNGER
refinement
X-PLOR
3.1
500
Varian
UNITYPLUS
600
Bruker
AMX
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
GLN
4
n
4
GLN
4
A
ILE
5
n
5
ILE
5
A
THR
6
n
6
THR
6
A
PHE
7
n
7
PHE
7
A
THR
8
n
8
THR
8
A
ASP
9
n
9
ASP
9
A
SER
10
n
10
SER
10
A
VAL
11
n
11
VAL
11
A
ARG
12
n
12
ARG
12
A
GLN
13
n
13
GLN
13
A
GLY
14
n
14
GLY
14
A
THR
15
n
15
THR
15
A
SER
16
n
16
SER
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
GLY
19
n
19
GLY
19
A
ASN
20
n
20
ASN
20
A
PRO
21
n
21
PRO
21
A
TYR
22
n
22
TYR
22
A
THR
23
n
23
THR
23
A
PHE
24
n
24
PHE
24
A
GLN
25
n
25
GLN
25
A
GLU
26
n
26
GLU
26
A
GLY
27
n
27
GLY
27
A
PHE
28
n
28
PHE
28
A
LEU
29
n
29
LEU
29
A
HIS
30
n
30
HIS
30
A
LEU
31
n
31
LEU
31
A
GLU
32
n
32
GLU
32
A
ASP
33
n
33
ASP
33
A
LYS
34
n
34
LYS
34
A
PRO
35
n
35
PRO
35
A
HIS
36
n
36
HIS
36
A
PRO
37
n
37
PRO
37
A
LEU
38
n
38
LEU
38
A
GLN
39
n
39
GLN
39
A
CYS
40
n
40
CYS
40
A
GLN
41
n
41
GLN
41
A
PHE
42
n
42
PHE
42
A
PHE
43
n
43
PHE
43
A
VAL
44
n
44
VAL
44
A
GLU
45
n
45
GLU
45
A
SER
46
n
46
SER
46
A
VAL
47
n
47
VAL
47
A
ILE
48
n
48
ILE
48
A
PRO
49
n
49
PRO
49
A
ALA
50
n
50
ALA
50
A
GLY
51
n
51
GLY
51
A
SER
52
n
52
SER
52
A
TYR
53
n
53
TYR
53
A
GLN
54
n
54
GLN
54
A
VAL
55
n
55
VAL
55
A
PRO
56
n
56
PRO
56
A
TYR
57
n
57
TYR
57
A
ARG
58
n
58
ARG
58
A
ILE
59
n
59
ILE
59
A
ASN
60
n
60
ASN
60
A
VAL
61
n
61
VAL
61
A
ASN
62
n
62
ASN
62
A
ASN
63
n
63
ASN
63
A
GLY
64
n
64
GLY
64
A
ARG
65
n
65
ARG
65
A
PRO
66
n
66
PRO
66
A
GLU
67
n
67
GLU
67
A
LEU
68
n
68
LEU
68
A
ALA
69
n
69
ALA
69
A
PHE
70
n
70
PHE
70
A
ASP
71
n
71
ASP
71
A
PHE
72
n
72
PHE
72
A
LYS
73
n
73
LYS
73
A
ALA
74
n
74
ALA
74
A
MET
75
n
75
MET
75
A
LYS
76
n
76
LYS
76
A
ARG
77
n
77
ARG
77
A
ALA
78
n
78
ALA
78
A
MET
1
n
1
MET
1
B
ASN
2
n
2
ASN
2
B
ILE
3
n
3
ILE
3
B
GLN
4
n
4
GLN
4
B
ILE
5
n
5
ILE
5
B
THR
6
n
6
THR
6
B
PHE
7
n
7
PHE
7
B
THR
8
n
8
THR
8
B
ASP
9
n
9
ASP
9
B
SER
10
n
10
SER
10
B
VAL
11
n
11
VAL
11
B
ARG
12
n
12
ARG
12
B
GLN
13
n
13
GLN
13
B
GLY
14
n
14
GLY
14
B
THR
15
n
15
THR
15
B
SER
16
n
16
SER
16
B
ALA
17
n
17
ALA
17
B
LYS
18
n
18
LYS
18
B
GLY
19
n
19
GLY
19
B
ASN
20
n
20
ASN
20
B
PRO
21
n
21
PRO
21
B
TYR
22
n
22
TYR
22
B
THR
23
n
23
THR
23
B
PHE
24
n
24
PHE
24
B
GLN
25
n
25
GLN
25
B
GLU
26
n
26
GLU
26
B
GLY
27
n
27
GLY
27
B
PHE
28
n
28
PHE
28
B
LEU
29
n
29
LEU
29
B
HIS
30
n
30
HIS
30
B
LEU
31
n
31
LEU
31
B
GLU
32
n
32
GLU
32
B
ASP
33
n
33
ASP
33
B
LYS
34
n
34
LYS
34
B
PRO
35
n
35
PRO
35
B
HIS
36
n
36
HIS
36
B
PRO
37
n
37
PRO
37
B
LEU
38
n
38
LEU
38
B
GLN
39
n
39
GLN
39
B
CYS
40
n
40
CYS
40
B
GLN
41
n
41
GLN
41
B
PHE
42
n
42
PHE
42
B
PHE
43
n
43
PHE
43
B
VAL
44
n
44
VAL
44
B
GLU
45
n
45
GLU
45
B
SER
46
n
46
SER
46
B
VAL
47
n
47
VAL
47
B
ILE
48
n
48
ILE
48
B
PRO
49
n
49
PRO
49
B
ALA
50
n
50
ALA
50
B
GLY
51
n
51
GLY
51
B
SER
52
n
52
SER
52
B
TYR
53
n
53
TYR
53
B
GLN
54
n
54
GLN
54
B
VAL
55
n
55
VAL
55
B
PRO
56
n
56
PRO
56
B
TYR
57
n
57
TYR
57
B
ARG
58
n
58
ARG
58
B
ILE
59
n
59
ILE
59
B
ASN
60
n
60
ASN
60
B
VAL
61
n
61
VAL
61
B
ASN
62
n
62
ASN
62
B
ASN
63
n
63
ASN
63
B
GLY
64
n
64
GLY
64
B
ARG
65
n
65
ARG
65
B
PRO
66
n
66
PRO
66
B
GLU
67
n
67
GLU
67
B
LEU
68
n
68
LEU
68
B
ALA
69
n
69
ALA
69
B
PHE
70
n
70
PHE
70
B
ASP
71
n
71
ASP
71
B
PHE
72
n
72
PHE
72
B
LYS
73
n
73
LYS
73
B
ALA
74
n
74
ALA
74
B
MET
75
n
75
MET
75
B
LYS
76
n
76
LYS
76
B
ARG
77
n
77
ARG
77
B
ALA
78
n
78
ALA
78
B
author_defined_assembly
2
dimeric
1830
-14
9910
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
38
A
O
LEU
38
A
N
LEU
29
A
N
LEU
29
A
O
PHE
28
A
O
PHE
28
A
N
THR
6
A
N
THR
6
A
O
ILE
3
A
O
ILE
3
A
N
VAL
55
A
N
VAL
55
A
O
GLN
54
A
O
GLN
54
A
N
LYS
76
A
N
LYS
76
A
O
ARG
12
A
O
ARG
12
A
N
PHE
24
A
N
PHE
24
A
N
ASN
62
A
N
ASN
62
A
O
ARG
65
A
O
ARG
65
B
O
LEU
38
B
O
LEU
38
B
N
LEU
29
B
N
LEU
29
B
O
PHE
28
B
O
PHE
28
B
N
THR
6
B
N
THR
6
B
O
ILE
3
B
O
ILE
3
B
N
VAL
55
B
N
VAL
55
B
O
GLN
54
B
O
GLN
54
B
N
LYS
76
B
N
LYS
76
B
O
ARG
12
B
O
ARG
12
B
N
PHE
24
B
N
PHE
24
B
N
ASN
62
B
N
ASN
62
B
O
ARG
65
B
O
ARG
65
1
B
B
O
H
THR
PHE
6
28
1.54
1
A
A
O
H
THR
PHE
6
28
1.54
1
A
A
O
H
ASN
GLU
60
67
1.58
1
B
B
O
H
ASN
GLU
60
67
1.58
1
A
ARG
12
0.306
SIDE CHAIN
1
A
ARG
58
0.286
SIDE CHAIN
1
A
ARG
77
0.297
SIDE CHAIN
1
B
ARG
12
0.306
SIDE CHAIN
1
B
ARG
58
0.285
SIDE CHAIN
1
B
ARG
77
0.297
SIDE CHAIN
1
A
ASN
63
49.08
24.40
1
B
ASN
63
49.05
24.42
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
PF3 SINGLE-STRANDED DNA BINDING PROTEIN
SOLUTION NMR STRUCTURE OF THE SINGLE-STRANDED DNA BINDING PROTEIN OF THE FILAMENTOUS PSEUDOMONAS PHAGE PF3, MINIMIZED AVERAGE STRUCTURE
1
N
N
1
N
N
DNA BINDING PROTEIN
DNA-BINDING PROTEIN, VIRAL, BACTERIOPHAGE PF3, SINGLE-STRANDED DNA, DNA BINDING PROTEIN
VHED_BPPF3
UNP
1
1
P03672
MNIQITFTDSVRQGTSAKGNPYTFQEGFLHLEDKPHPLQCQFFVESVIPAGSYQVPYRINVNNGRPELAFDFKAMKRA
1
78
1PFS
1
78
P03672
A
1
1
78
1
78
1PFS
1
78
P03672
B
1
1
78
5
2
2
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
38
A
LEU
38
A
PHE
43
A
PHE
43
A
PHE
24
A
PHE
24
A
LEU
29
A
LEU
29
A
ASN
2
A
ASN
2
A
PHE
7
A
PHE
7
A
GLY
51
A
GLY
51
A
ASN
62
A
ASN
62
A
LYS
76
A
LYS
76
A
ARG
77
A
ARG
77
A
VAL
11
A
VAL
11
A
THR
15
A
THR
15
A
PRO
21
A
PRO
21
A
GLN
25
A
GLN
25
A
TYR
57
A
TYR
57
A
ASN
62
A
ASN
62
A
ARG
65
A
ARG
65
A
ASP
71
A
ASP
71
B
LEU
38
B
LEU
38
B
PHE
43
B
PHE
43
B
PHE
24
B
PHE
24
B
LEU
29
B
LEU
29
B
ASN
2
B
ASN
2
B
PHE
7
B
PHE
7
B
GLY
51
B
GLY
51
B
ASN
62
B
ASN
62
B
LYS
76
B
LYS
76
B
ARG
77
B
ARG
77
B
VAL
11
B
VAL
11
B
THR
15
B
THR
15
B
PRO
21
B
PRO
21
B
GLN
25
B
GLN
25
B
TYR
57
B
TYR
57
B
ASN
62
B
ASN
62
B
ARG
65
B
ARG
65
B
ASP
71
B
ASP
71
1
P 1