0.011755 0.000000 0.000000 0.000000 0.011745 0.000000 0.000000 0.000000 0.020619 0.00000 0.00000 0.00000 CIS PROLINE - PRO 196 CYS 204 - ALA 205 OMEGA = 5.63 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION CIS PROLINE - PRO 241 RESIDUE TRP 86 IS THE CENTRAL RESIDUE OF CLASSICAL GAMMA TURN (PHI = 63, PSI = -42). RESIDUES CYS 231 - THR 245 FORM A WIDE OMEGA LOOP. Norris, G.E. Stillman, T.J. Anderson, B.F. Baker, E.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 85.070 85.140 48.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 2 1049 1059 10.1016/S0969-2126(94)00108-1 7881905 The three-dimensional structure of PNGase F, a glycosylasparaginase from Flavobacterium meningosepticum. 1994 To be Published 0353 Crystal Structure of Peptide-N(4)-(N-Acetyl-Beta-D-Glucosaminyl)Asparagine Amidase F at 2.2 Angstroms Resolution US J.Biol.Chem. JBCHA3 0071 0021-9258 241 624 Purification and Crystallization of the Endoglycosidase Pgnase F, a Peptide:N-Glycosidase from Flavobacterium Meningosepticum 1994 US J.Biol.Chem. JBCHA3 0071 0021-9258 265 6967 Cloning and Expression of Peptide-N4-(N-Acetyl-Beta-D-Glucosaminyl)Asparagine Amidase F in Escherichia Coli 1990 US J.Biol.Chem. JBCHA3 0071 0021-9258 265 6961 Molecular Cloning and Amino Acid Sequence of Peptide-N4-(N-Acetyl-Beta-D-Glucosaminyl)Asparagine Amidase from Flavobacterium Meningosepticum 1990 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 34845.879 PEPTIDE-N(4)-(N-ACETYL-BETA-D-GLUCOSAMINYL)ASPARAGINE AMIDASE F 3.5.1.52 1 man polymer 18.015 water 230 nat water no no APADNTVNIKTFDKVKNAFGDGLSQSAEGTFTFPADVTTVKTIKMFIKNECPNKTCDEWDRYANVYVKNKTTGEWYEIGR FITPYWVGTEKLPRGLEIDVTDFKSLLSGNTELKIYTETWLAKGREYSVDFDIVYGTPDYKYSAVVPVIQYNKSSIDGVP YGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEWCFRTHTIAINNANTFQHQLGALGCSANPINNQS PGNWTPDRAGWCPGMAVPTRIDVLNNSLTGSTFSYEYKFQSWTNNGTNGDAFYAISSFVIAKSNTPISAPVVTN APADNTVNIKTFDKVKNAFGDGLSQSAEGTFTFPADVTTVKTIKMFIKNECPNKTCDEWDRYANVYVKNKTTGEWYEIGR FITPYWVGTEKLPRGLEIDVTDFKSLLSGNTELKIYTETWLAKGREYSVDFDIVYGTPDYKYSAVVPVIQYNKSSIDGVP YGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEWCFRTHTIAINNANTFQHQLGALGCSANPINNQS PGNWTPDRAGWCPGMAVPTRIDVLNNSLTGSTFSYEYKFQSWTNNGTNGDAFYAISSFVIAKSNTPISAPVVTN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Elizabethkingia sample 238 Elizabethkingia meningoseptica 2.52 51.17 repository Initial release Version format compliance Version format compliance 1 0 1995-01-26 1 1 2008-03-24 1 2 2011-07-13 Y 1994-10-06 REL REL HOH water RESIDUE TRP 86 IS THE CENTRAL RESIDUE OF CLASSICAL GAMMA TURN (PHI = 63, PSI = -42). RESIDUES CYS 231 - THR 245 FORM A WIDE OMEGA LOOP. HOH 400 2 HOH HOH 400 A HOH 401 2 HOH HOH 401 A HOH 402 2 HOH HOH 402 A HOH 403 2 HOH HOH 403 A HOH 404 2 HOH HOH 404 A HOH 405 2 HOH HOH 405 A HOH 406 2 HOH HOH 406 A HOH 407 2 HOH HOH 407 A HOH 408 2 HOH HOH 408 A HOH 409 2 HOH HOH 409 A HOH 410 2 HOH HOH 410 A HOH 411 2 HOH HOH 411 A HOH 412 2 HOH HOH 412 A HOH 413 2 HOH HOH 413 A HOH 414 2 HOH HOH 414 A HOH 415 2 HOH HOH 415 A HOH 416 2 HOH HOH 416 A HOH 417 2 HOH HOH 417 A HOH 418 2 HOH HOH 418 A HOH 419 2 HOH HOH 419 A HOH 420 2 HOH HOH 420 A HOH 421 2 HOH HOH 421 A HOH 422 2 HOH HOH 422 A HOH 423 2 HOH HOH 423 A HOH 424 2 HOH HOH 424 A HOH 425 2 HOH HOH 425 A HOH 426 2 HOH HOH 426 A HOH 427 2 HOH HOH 427 A HOH 428 2 HOH HOH 428 A HOH 429 2 HOH HOH 429 A HOH 430 2 HOH HOH 430 A HOH 431 2 HOH HOH 431 A HOH 432 2 HOH HOH 432 A HOH 433 2 HOH HOH 433 A HOH 434 2 HOH HOH 434 A HOH 435 2 HOH HOH 435 A HOH 436 2 HOH HOH 436 A HOH 437 2 HOH HOH 437 A HOH 438 2 HOH HOH 438 A HOH 439 2 HOH HOH 439 A HOH 440 2 HOH HOH 440 A HOH 441 2 HOH HOH 441 A HOH 442 2 HOH HOH 442 A HOH 444 2 HOH HOH 444 A HOH 445 2 HOH HOH 445 A HOH 446 2 HOH HOH 446 A HOH 447 2 HOH HOH 447 A HOH 448 2 HOH HOH 448 A HOH 449 2 HOH HOH 449 A HOH 450 2 HOH HOH 450 A HOH 451 2 HOH HOH 451 A HOH 452 2 HOH HOH 452 A HOH 453 2 HOH HOH 453 A HOH 454 2 HOH HOH 454 A HOH 455 2 HOH HOH 455 A HOH 456 2 HOH HOH 456 A HOH 457 2 HOH HOH 457 A HOH 458 2 HOH HOH 458 A HOH 459 2 HOH HOH 459 A HOH 460 2 HOH HOH 460 A HOH 461 2 HOH HOH 461 A HOH 462 2 HOH HOH 462 A HOH 463 2 HOH HOH 463 A HOH 464 2 HOH HOH 464 A HOH 466 2 HOH HOH 466 A HOH 467 2 HOH HOH 467 A HOH 468 2 HOH HOH 468 A HOH 469 2 HOH HOH 469 A HOH 470 2 HOH HOH 470 A HOH 471 2 HOH HOH 471 A HOH 472 2 HOH HOH 472 A HOH 473 2 HOH HOH 473 A HOH 474 2 HOH HOH 474 A HOH 475 2 HOH HOH 475 A HOH 476 2 HOH HOH 476 A HOH 477 2 HOH HOH 477 A HOH 478 2 HOH HOH 478 A HOH 479 2 HOH HOH 479 A HOH 480 2 HOH HOH 480 A HOH 481 2 HOH HOH 481 A HOH 482 2 HOH HOH 482 A HOH 483 2 HOH HOH 483 A HOH 484 2 HOH HOH 484 A HOH 485 2 HOH HOH 485 A HOH 486 2 HOH HOH 486 A HOH 487 2 HOH HOH 487 A HOH 488 2 HOH HOH 488 A HOH 489 2 HOH HOH 489 A HOH 490 2 HOH HOH 490 A HOH 491 2 HOH HOH 491 A HOH 492 2 HOH HOH 492 A HOH 493 2 HOH HOH 493 A HOH 494 2 HOH HOH 494 A HOH 495 2 HOH HOH 495 A HOH 496 2 HOH HOH 496 A HOH 499 2 HOH HOH 499 A HOH 500 2 HOH HOH 500 A HOH 501 2 HOH HOH 501 A HOH 503 2 HOH HOH 503 A HOH 504 2 HOH HOH 504 A HOH 505 2 HOH HOH 505 A HOH 506 2 HOH HOH 506 A HOH 507 2 HOH HOH 507 A HOH 508 2 HOH HOH 508 A HOH 509 2 HOH HOH 509 A HOH 510 2 HOH HOH 510 A HOH 511 2 HOH HOH 511 A HOH 512 2 HOH HOH 512 A HOH 513 2 HOH HOH 513 A HOH 514 2 HOH HOH 514 A HOH 515 2 HOH HOH 515 A HOH 516 2 HOH HOH 516 A HOH 517 2 HOH HOH 517 A HOH 518 2 HOH HOH 518 A HOH 519 2 HOH HOH 519 A HOH 520 2 HOH HOH 520 A HOH 521 2 HOH HOH 521 A HOH 522 2 HOH HOH 522 A HOH 523 2 HOH HOH 523 A HOH 524 2 HOH HOH 524 A HOH 525 2 HOH HOH 525 A HOH 526 2 HOH HOH 526 A HOH 527 2 HOH HOH 527 A HOH 528 2 HOH HOH 528 A HOH 529 2 HOH HOH 529 A HOH 530 2 HOH HOH 530 A HOH 531 2 HOH HOH 531 A HOH 532 2 HOH HOH 532 A HOH 533 2 HOH HOH 533 A HOH 534 2 HOH HOH 534 A HOH 535 2 HOH HOH 535 A HOH 536 2 HOH HOH 536 A HOH 537 2 HOH HOH 537 A HOH 538 2 HOH HOH 538 A HOH 539 2 HOH HOH 539 A HOH 541 2 HOH HOH 541 A HOH 542 2 HOH HOH 542 A HOH 543 2 HOH HOH 543 A HOH 544 2 HOH HOH 544 A HOH 545 2 HOH HOH 545 A HOH 546 2 HOH HOH 546 A HOH 547 2 HOH HOH 547 A HOH 548 2 HOH HOH 548 A HOH 549 2 HOH HOH 549 A HOH 550 2 HOH HOH 550 A HOH 551 2 HOH HOH 551 A HOH 552 2 HOH HOH 552 A HOH 553 2 HOH HOH 553 A HOH 554 2 HOH HOH 554 A HOH 555 2 HOH HOH 555 A HOH 556 2 HOH HOH 556 A HOH 557 2 HOH HOH 557 A HOH 558 2 HOH HOH 558 A HOH 559 2 HOH HOH 559 A HOH 560 2 HOH HOH 560 A HOH 561 2 HOH HOH 561 A HOH 562 2 HOH HOH 562 A HOH 563 2 HOH HOH 563 A HOH 564 2 HOH HOH 564 A HOH 565 2 HOH HOH 565 A HOH 566 2 HOH HOH 566 A HOH 567 2 HOH HOH 567 A HOH 568 2 HOH HOH 568 A HOH 569 2 HOH HOH 569 A HOH 570 2 HOH HOH 570 A HOH 571 2 HOH HOH 571 A HOH 573 2 HOH HOH 573 A HOH 574 2 HOH HOH 574 A HOH 575 2 HOH HOH 575 A HOH 576 2 HOH HOH 576 A HOH 577 2 HOH HOH 577 A HOH 578 2 HOH HOH 578 A HOH 579 2 HOH HOH 579 A HOH 580 2 HOH HOH 580 A HOH 581 2 HOH HOH 581 A HOH 582 2 HOH HOH 582 A HOH 583 2 HOH HOH 583 A HOH 584 2 HOH HOH 584 A HOH 585 2 HOH HOH 585 A HOH 587 2 HOH HOH 587 A HOH 588 2 HOH HOH 588 A HOH 589 2 HOH HOH 589 A HOH 590 2 HOH HOH 590 A HOH 591 2 HOH HOH 591 A HOH 593 2 HOH HOH 593 A HOH 594 2 HOH HOH 594 A HOH 595 2 HOH HOH 595 A HOH 596 2 HOH HOH 596 A HOH 601 2 HOH HOH 601 A HOH 602 2 HOH HOH 602 A HOH 603 2 HOH HOH 603 A HOH 604 2 HOH HOH 604 A HOH 605 2 HOH HOH 605 A HOH 606 2 HOH HOH 606 A HOH 608 2 HOH HOH 608 A HOH 609 2 HOH HOH 609 A HOH 610 2 HOH HOH 610 A HOH 611 2 HOH HOH 611 A HOH 612 2 HOH HOH 612 A HOH 613 2 HOH HOH 613 A HOH 616 2 HOH HOH 616 A HOH 618 2 HOH HOH 618 A HOH 621 2 HOH HOH 621 A HOH 622 2 HOH HOH 622 A HOH 623 2 HOH HOH 623 A HOH 624 2 HOH HOH 624 A HOH 625 2 HOH HOH 625 A HOH 626 2 HOH HOH 626 A HOH 628 2 HOH HOH 628 A HOH 629 2 HOH HOH 629 A HOH 632 2 HOH HOH 632 A HOH 633 2 HOH HOH 633 A HOH 638 2 HOH HOH 638 A HOH 639 2 HOH HOH 639 A HOH 640 2 HOH HOH 640 A HOH 641 2 HOH HOH 641 A HOH 642 2 HOH HOH 642 A HOH 645 2 HOH HOH 645 A HOH 648 2 HOH HOH 648 A HOH 649 2 HOH HOH 649 A HOH 650 2 HOH HOH 650 A HOH 656 2 HOH HOH 656 A HOH 658 2 HOH HOH 658 A HOH 660 2 HOH HOH 660 A HOH 668 2 HOH HOH 668 A HOH 669 2 HOH HOH 669 A HOH 672 2 HOH HOH 672 A HOH 675 2 HOH HOH 675 A HOH 676 2 HOH HOH 676 A HOH 677 2 HOH HOH 677 A n 1 1 A n 2 2 A n 3 3 A ASP 4 n 4 ASP 4 A ASN 5 n 5 ASN 5 A THR 6 n 6 THR 6 A VAL 7 n 7 VAL 7 A ASN 8 n 8 ASN 8 A ILE 9 n 9 ILE 9 A LYS 10 n 10 LYS 10 A THR 11 n 11 THR 11 A PHE 12 n 12 PHE 12 A ASP 13 n 13 ASP 13 A LYS 14 n 14 LYS 14 A VAL 15 n 15 VAL 15 A LYS 16 n 16 LYS 16 A ASN 17 n 17 ASN 17 A ALA 18 n 18 ALA 18 A PHE 19 n 19 PHE 19 A GLY 20 n 20 GLY 20 A ASP 21 n 21 ASP 21 A GLY 22 n 22 GLY 22 A LEU 23 n 23 LEU 23 A SER 24 n 24 SER 24 A GLN 25 n 25 GLN 25 A SER 26 n 26 SER 26 A ALA 27 n 27 ALA 27 A GLU 28 n 28 GLU 28 A GLY 29 n 29 GLY 29 A THR 30 n 30 THR 30 A PHE 31 n 31 PHE 31 A THR 32 n 32 THR 32 A PHE 33 n 33 PHE 33 A PRO 34 n 34 PRO 34 A ALA 35 n 35 ALA 35 A ASP 36 n 36 ASP 36 A VAL 37 n 37 VAL 37 A THR 38 n 38 THR 38 A THR 39 n 39 THR 39 A VAL 40 n 40 VAL 40 A LYS 41 n 41 LYS 41 A THR 42 n 42 THR 42 A ILE 43 n 43 ILE 43 A LYS 44 n 44 LYS 44 A MET 45 n 45 MET 45 A PHE 46 n 46 PHE 46 A ILE 47 n 47 ILE 47 A LYS 48 n 48 LYS 48 A ASN 49 n 49 ASN 49 A GLU 50 n 50 GLU 50 A CYS 51 n 51 CYS 51 A PRO 52 n 52 PRO 52 A ASN 53 n 53 ASN 53 A LYS 54 n 54 LYS 54 A THR 55 n 55 THR 55 A CYS 56 n 56 CYS 56 A ASP 57 n 57 ASP 57 A GLU 58 n 58 GLU 58 A TRP 59 n 59 TRP 59 A ASP 60 n 60 ASP 60 A ARG 61 n 61 ARG 61 A TYR 62 n 62 TYR 62 A ALA 63 n 63 ALA 63 A ASN 64 n 64 ASN 64 A VAL 65 n 65 VAL 65 A TYR 66 n 66 TYR 66 A VAL 67 n 67 VAL 67 A LYS 68 n 68 LYS 68 A ASN 69 n 69 ASN 69 A LYS 70 n 70 LYS 70 A THR 71 n 71 THR 71 A THR 72 n 72 THR 72 A GLY 73 n 73 GLY 73 A GLU 74 n 74 GLU 74 A TRP 75 n 75 TRP 75 A TYR 76 n 76 TYR 76 A GLU 77 n 77 GLU 77 A ILE 78 n 78 ILE 78 A GLY 79 n 79 GLY 79 A ARG 80 n 80 ARG 80 A PHE 81 n 81 PHE 81 A ILE 82 n 82 ILE 82 A THR 83 n 83 THR 83 A PRO 84 n 84 PRO 84 A TYR 85 n 85 TYR 85 A TRP 86 n 86 TRP 86 A VAL 87 n 87 VAL 87 A GLY 88 n 88 GLY 88 A THR 89 n 89 THR 89 A GLU 90 n 90 GLU 90 A LYS 91 n 91 LYS 91 A LEU 92 n 92 LEU 92 A PRO 93 n 93 PRO 93 A ARG 94 n 94 ARG 94 A GLY 95 n 95 GLY 95 A LEU 96 n 96 LEU 96 A GLU 97 n 97 GLU 97 A ILE 98 n 98 ILE 98 A ASP 99 n 99 ASP 99 A VAL 100 n 100 VAL 100 A THR 101 n 101 THR 101 A ASP 102 n 102 ASP 102 A PHE 103 n 103 PHE 103 A LYS 104 n 104 LYS 104 A SER 105 n 105 SER 105 A LEU 106 n 106 LEU 106 A LEU 107 n 107 LEU 107 A SER 108 n 108 SER 108 A GLY 109 n 109 GLY 109 A ASN 110 n 110 ASN 110 A THR 111 n 111 THR 111 A GLU 112 n 112 GLU 112 A LEU 113 n 113 LEU 113 A LYS 114 n 114 LYS 114 A ILE 115 n 115 ILE 115 A TYR 116 n 116 TYR 116 A THR 117 n 117 THR 117 A GLU 118 n 118 GLU 118 A THR 119 n 119 THR 119 A TRP 120 n 120 TRP 120 A LEU 121 n 121 LEU 121 A ALA 122 n 122 ALA 122 A LYS 123 n 123 LYS 123 A GLY 124 n 124 GLY 124 A ARG 125 n 125 ARG 125 A GLU 126 n 126 GLU 126 A TYR 127 n 127 TYR 127 A SER 128 n 128 SER 128 A VAL 129 n 129 VAL 129 A ASP 130 n 130 ASP 130 A PHE 131 n 131 PHE 131 A ASP 132 n 132 ASP 132 A ILE 133 n 133 ILE 133 A VAL 134 n 134 VAL 134 A TYR 135 n 135 TYR 135 A GLY 136 n 136 GLY 136 A THR 137 n 137 THR 137 A PRO 138 n 138 PRO 138 A ASP 139 n 139 ASP 139 A TYR 140 n 140 TYR 140 A LYS 141 n 141 LYS 141 A TYR 142 n 142 TYR 142 A SER 143 n 143 SER 143 A ALA 144 n 144 ALA 144 A VAL 145 n 145 VAL 145 A VAL 146 n 146 VAL 146 A PRO 147 n 147 PRO 147 A VAL 148 n 148 VAL 148 A ILE 149 n 149 ILE 149 A GLN 150 n 150 GLN 150 A TYR 151 n 151 TYR 151 A ASN 152 n 152 ASN 152 A LYS 153 n 153 LYS 153 A SER 154 n 154 SER 154 A SER 155 n 155 SER 155 A ILE 156 n 156 ILE 156 A ASP 157 n 157 ASP 157 A GLY 158 n 158 GLY 158 A VAL 159 n 159 VAL 159 A PRO 160 n 160 PRO 160 A TYR 161 n 161 TYR 161 A GLY 162 n 162 GLY 162 A LYS 163 n 163 LYS 163 A ALA 164 n 164 ALA 164 A HIS 165 n 165 HIS 165 A THR 166 n 166 THR 166 A LEU 167 n 167 LEU 167 A GLY 168 n 168 GLY 168 A LEU 169 n 169 LEU 169 A LYS 170 n 170 LYS 170 A LYS 171 n 171 LYS 171 A ASN 172 n 172 ASN 172 A ILE 173 n 173 ILE 173 A GLN 174 n 174 GLN 174 A LEU 175 n 175 LEU 175 A PRO 176 n 176 PRO 176 A THR 177 n 177 THR 177 A ASN 178 n 178 ASN 178 A THR 179 n 179 THR 179 A GLU 180 n 180 GLU 180 A LYS 181 n 181 LYS 181 A ALA 182 n 182 ALA 182 A TYR 183 n 183 TYR 183 A LEU 184 n 184 LEU 184 A ARG 185 n 185 ARG 185 A THR 186 n 186 THR 186 A THR 187 n 187 THR 187 A ILE 188 n 188 ILE 188 A SER 189 n 189 SER 189 A GLY 190 n 190 GLY 190 A TRP 191 n 191 TRP 191 A GLY 192 n 192 GLY 192 A HIS 193 n 193 HIS 193 A ALA 194 n 194 ALA 194 A LYS 195 n 195 LYS 195 A PRO 196 n 196 PRO 196 A TYR 197 n 197 TYR 197 A ASP 198 n 198 ASP 198 A ALA 199 n 199 ALA 199 A GLY 200 n 200 GLY 200 A SER 201 n 201 SER 201 A ARG 202 n 202 ARG 202 A GLY 203 n 203 GLY 203 A CYS 204 n 204 CYS 204 A ALA 205 n 205 ALA 205 A GLU 206 n 206 GLU 206 A TRP 207 n 207 TRP 207 A CYS 208 n 208 CYS 208 A PHE 209 n 209 PHE 209 A ARG 210 n 210 ARG 210 A THR 211 n 211 THR 211 A HIS 212 n 212 HIS 212 A THR 213 n 213 THR 213 A ILE 214 n 214 ILE 214 A ALA 215 n 215 ALA 215 A ILE 216 n 216 ILE 216 A ASN 217 n 217 ASN 217 A ASN 218 n 218 ASN 218 A ALA 219 n 219 ALA 219 A ASN 220 n 220 ASN 220 A THR 221 n 221 THR 221 A PHE 222 n 222 PHE 222 A GLN 223 n 223 GLN 223 A HIS 224 n 224 HIS 224 A GLN 225 n 225 GLN 225 A LEU 226 n 226 LEU 226 A GLY 227 n 227 GLY 227 A ALA 228 n 228 ALA 228 A LEU 229 n 229 LEU 229 A GLY 230 n 230 GLY 230 A CYS 231 n 231 CYS 231 A SER 232 n 232 SER 232 A ALA 233 n 233 ALA 233 A ASN 234 n 234 ASN 234 A PRO 235 n 235 PRO 235 A ILE 236 n 236 ILE 236 A ASN 237 n 237 ASN 237 A ASN 238 n 238 ASN 238 A GLN 239 n 239 GLN 239 A SER 240 n 240 SER 240 A PRO 241 n 241 PRO 241 A GLY 242 n 242 GLY 242 A ASN 243 n 243 ASN 243 A TRP 244 n 244 TRP 244 A THR 245 n 245 THR 245 A PRO 246 n 246 PRO 246 A ASP 247 n 247 ASP 247 A ARG 248 n 248 ARG 248 A ALA 249 n 249 ALA 249 A GLY 250 n 250 GLY 250 A TRP 251 n 251 TRP 251 A CYS 252 n 252 CYS 252 A PRO 253 n 253 PRO 253 A GLY 254 n 254 GLY 254 A MET 255 n 255 MET 255 A ALA 256 n 256 ALA 256 A VAL 257 n 257 VAL 257 A PRO 258 n 258 PRO 258 A THR 259 n 259 THR 259 A ARG 260 n 260 ARG 260 A ILE 261 n 261 ILE 261 A ASP 262 n 262 ASP 262 A VAL 263 n 263 VAL 263 A LEU 264 n 264 LEU 264 A ASN 265 n 265 ASN 265 A ASN 266 n 266 ASN 266 A SER 267 n 267 SER 267 A LEU 268 n 268 LEU 268 A THR 269 n 269 THR 269 A GLY 270 n 270 GLY 270 A SER 271 n 271 SER 271 A THR 272 n 272 THR 272 A PHE 273 n 273 PHE 273 A SER 274 n 274 SER 274 A TYR 275 n 275 TYR 275 A GLU 276 n 276 GLU 276 A TYR 277 n 277 TYR 277 A LYS 278 n 278 LYS 278 A PHE 279 n 279 PHE 279 A GLN 280 n 280 GLN 280 A SER 281 n 281 SER 281 A TRP 282 n 282 TRP 282 A THR 283 n 283 THR 283 A ASN 284 n 284 ASN 284 A ASN 285 n 285 ASN 285 A GLY 286 n 286 GLY 286 A THR 287 n 287 THR 287 A ASN 288 n 288 ASN 288 A GLY 289 n 289 GLY 289 A ASP 290 n 290 ASP 290 A ALA 291 n 291 ALA 291 A PHE 292 n 292 PHE 292 A TYR 293 n 293 TYR 293 A ALA 294 n 294 ALA 294 A ILE 295 n 295 ILE 295 A SER 296 n 296 SER 296 A SER 297 n 297 SER 297 A PHE 298 n 298 PHE 298 A VAL 299 n 299 VAL 299 A ILE 300 n 300 ILE 300 A ALA 301 n 301 ALA 301 A LYS 302 n 302 LYS 302 A SER 303 n 303 SER 303 A ASN 304 n 304 ASN 304 A THR 305 n 305 THR 305 A PRO 306 n 306 PRO 306 A ILE 307 n 307 ILE 307 A SER 308 n 308 SER 308 A ALA 309 n 309 ALA 309 A PRO 310 n 310 PRO 310 A VAL 311 n 311 VAL 311 A VAL 312 n 312 VAL 312 A THR 313 n 313 THR 313 A ASN 314 n 314 ASN 314 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 98 A O ILE 98 A N MET 45 A N MET 45 A N LYS 48 A N LYS 48 A O SER 128 A O SER 128 A N ILE 133 A N ILE 133 A O VAL 7 A O VAL 7 A O ILE 98 A O ILE 98 A N MET 45 A N MET 45 A N LYS 48 A N LYS 48 A O SER 128 A O SER 128 A O TYR 127 A O TYR 127 A N VAL 15 A N VAL 15 A N PHE 33 A N PHE 33 A O GLY 109 A O GLY 109 A N TYR 116 A N TYR 116 A O ASN 64 A O ASN 64 A O VAL 67 A O VAL 67 A N TYR 76 A N TYR 76 A O ASP 262 A O ASP 262 A N LEU 184 A N LEU 184 A N TRP 191 A N TRP 191 A O PHE 292 A O PHE 292 A O SER 303 A O SER 303 A N TYR 142 A N TYR 142 A O ASP 262 A O ASP 262 A N LEU 184 A N LEU 184 A N TRP 191 A N TRP 191 A O PHE 292 A O PHE 292 A O TYR 293 A O TYR 293 A N VAL 159 A N VAL 159 A N LEU 226 A N LEU 226 A O ARG 210 A O ARG 210 A N ALA 215 A N ALA 215 A O GLU 276 A O GLU 276 A N TYR 275 A N TYR 275 A O LYS 171 A O LYS 171 A O GLN 174 A O GLN 174 A N VAL 311 A N VAL 311 A N ASP 198 A N ASP 198 A O ARG 202 A O ARG 202 1 A CG ASP 4 A CG ASP 4 1 Y 1 A OD1 ASP 4 A OD1 ASP 4 1 Y 1 A OD2 ASP 4 A OD2 ASP 4 1 Y 1 A CG ASN 5 A CG ASN 5 1 Y 1 A OD1 ASN 5 A OD1 ASN 5 1 Y 1 A ND2 ASN 5 A ND2 ASN 5 1 Y 1 A CD1 ILE 149 A CD1 ILE 149 0 Y 1 A CB THR 245 A CB THR 245 0 Y 1 A OG1 THR 245 A OG1 THR 245 0 Y 1 A CG2 THR 245 A CG2 THR 245 0 Y 1 A ALA 1 A ALA 1 1 Y 1 A PRO 2 A PRO 2 1 Y 1 A ALA 3 A ALA 3 1 Y 1 6.28 0.90 118.30 124.58 A A A CB CG OD1 ASP ASP ASP 13 13 13 N 1 -7.45 0.90 118.30 110.85 A A A CB CG OD2 ASP ASP ASP 13 13 13 N 1 -5.90 0.90 118.30 112.40 A A A CB CG OD2 ASP ASP ASP 36 36 36 N 1 5.73 0.90 118.30 124.03 A A A CB CG OD2 ASP ASP ASP 130 130 130 N 1 -5.82 0.90 118.30 112.48 A A A CB CG OD1 ASP ASP ASP 157 157 157 N 1 6.05 0.90 118.30 124.35 A A A CB CG OD1 ASP ASP ASP 198 198 198 N 1 -6.20 0.90 118.30 112.10 A A A CB CG OD2 ASP ASP ASP 198 198 198 N 1 6.75 0.90 118.30 125.05 A A A CB CG OD1 ASP ASP ASP 247 247 247 N 1 -5.95 0.90 118.30 112.35 A A A CB CG OD2 ASP ASP ASP 247 247 247 N 1 A A CD OE1 GLU GLU 126 126 0.112 0.011 1.252 1.364 N 1 A THR 11 -118.17 -94.09 1 A TRP 86 65.75 -44.46 1 A ASN 152 -152.03 23.74 0.168 1.8 20.0 27995 1 0.0 1.8 20.0 230 2667 0 0 2437 refinement TNT PEPTIDE-N(4)-(N-ACETYL-BETA-D-GLUCOSAMINYL) ASPARAGINE AMIDASE (N-GLYCOSIDASE F) (PNG-ASE F) (E.C.3.5.1.52) THE THREE-DIMENSIONAL STRUCTURE OF PNGASE F, A GLYCOSYLASPARAGINASE FROM FLAVOBACTERIUM MENINGOSEPTICUM 1 N N 2 N N A CYS 51 A CYS 51 HELX_P A THR 55 A THR 55 5 1 5 A THR 101 A THR 101 HELX_P A LYS 104 A LYS 104 5 2 4 A SER 154 A SER 154 HELX_P A GLY 158 A GLY 158 5 3 5 A GLY 230 A GLY 230 HELX_P A ASN 234 A ASN 234 5 4 5 A ASN 265 A ASN 265 HELX_P A THR 269 A THR 269 5 5 5 disulf 2.000 A CYS 51 A SG CYS 51 1_555 A CYS 56 A SG CYS 56 1_555 disulf 2.072 A CYS 204 A SG CYS 204 1_555 A CYS 208 A SG CYS 208 1_555 disulf 2.072 A CYS 231 A SG CYS 231 1_555 A CYS 252 A SG CYS 252 1_555 ENDOGLYCOSIDASE ENDOGLYCOSIDASE A LYS 195 A LYS 195 1 A PRO 196 A PRO 196 0.97 A CYS 204 A CYS 204 1 A ALA 205 A ALA 205 5.63 A SER 240 A SER 240 1 A PRO 241 A PRO 241 7.84 PNGF_FLAME UNP 1 1 P21163 MRKLLIFSISAYLMAGIVSCKGVDSATPVTEDRLALNAVNAPADNTVNIKTFDKVKNAFGDGLSQSAEGTFTFPADVTTV KTIKMFIKNECPNKTCDEWDRYANVYVKNKTTGEWYEIGRFITPYWVGTEKLPRGLEIDVTDFKSLLSGNTELKIYTETW LAKGREYSVDFDIVYGTPDYKYSAVVPVIQYNKSSIDGVPYGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKPYDAG SRGCAEWCFRTHTIAINNANTFQHQLGALGCSANPINNQSPGNWAPDRAGWCPGMAVPTRIDVLNNSLTGSTFSYEYKFQ SWTNNGTNGDAFYAISSFVIAKSNTPISAPVVTN 41 354 1PGS 1 314 P21163 A 1 1 314 1 ALA CONFLICT THR 245 1PGS A P21163 UNP 285 245 4 4 4 4 4 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 96 A LEU 96 A ASP 99 A ASP 99 A VAL 40 A VAL 40 A ASN 49 A ASN 49 A ARG 125 A ARG 125 A TYR 135 A TYR 135 A THR 6 A THR 6 A LYS 10 A LYS 10 A LEU 96 A LEU 96 A ASP 99 A ASP 99 A VAL 40 A VAL 40 A ASN 49 A ASN 49 A ARG 125 A ARG 125 A TYR 135 A TYR 135 A VAL 15 A VAL 15 A ASN 17 A ASN 17 A SER 26 A SER 26 A PHE 33 A PHE 33 A GLY 109 A GLY 109 A THR 117 A THR 117 A TYR 62 A TYR 62 A LYS 68 A LYS 68 A TRP 75 A TRP 75 A ILE 82 A ILE 82 A ARG 260 A ARG 260 A VAL 263 A VAL 263 A LYS 181 A LYS 181 A TRP 191 A TRP 191 A PHE 292 A PHE 292 A SER 303 A SER 303 A TYR 142 A TYR 142 A TYR 151 A TYR 151 A ARG 260 A ARG 260 A VAL 263 A VAL 263 A LYS 181 A LYS 181 A TRP 191 A TRP 191 A PHE 292 A PHE 292 A SER 303 A SER 303 A VAL 159 A VAL 159 A PRO 160 A PRO 160 A ALA 219 A ALA 219 A LEU 226 A LEU 226 A ARG 210 A ARG 210 A ILE 216 A ILE 216 A THR 272 A THR 272 A LYS 278 A LYS 278 A LYS 170 A LYS 170 A GLN 174 A GLN 174 A VAL 311 A VAL 311 A THR 313 A THR 313 A HIS 193 A HIS 193 A ASP 198 A ASP 198 A ARG 202 A ARG 202 A ALA 205 A ALA 205 18 P 21 21 2