0.011755
0.000000
0.000000
0.000000
0.011745
0.000000
0.000000
0.000000
0.020619
0.00000
0.00000
0.00000
CIS PROLINE - PRO 196
CYS 204 - ALA 205 OMEGA = 5.63 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CIS PROLINE - PRO 241
RESIDUE TRP 86 IS THE CENTRAL RESIDUE OF CLASSICAL GAMMA TURN (PHI = 63, PSI = -42).
RESIDUES CYS 231 - THR 245 FORM A WIDE OMEGA LOOP.
Norris, G.E.
Stillman, T.J.
Anderson, B.F.
Baker, E.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
85.070
85.140
48.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
2
1049
1059
10.1016/S0969-2126(94)00108-1
7881905
The three-dimensional structure of PNGase F, a glycosylasparaginase from Flavobacterium meningosepticum.
1994
To be Published
0353
Crystal Structure of Peptide-N(4)-(N-Acetyl-Beta-D-Glucosaminyl)Asparagine Amidase F at 2.2 Angstroms Resolution
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
241
624
Purification and Crystallization of the Endoglycosidase Pgnase F, a Peptide:N-Glycosidase from Flavobacterium Meningosepticum
1994
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
265
6967
Cloning and Expression of Peptide-N4-(N-Acetyl-Beta-D-Glucosaminyl)Asparagine Amidase F in Escherichia Coli
1990
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
265
6961
Molecular Cloning and Amino Acid Sequence of Peptide-N4-(N-Acetyl-Beta-D-Glucosaminyl)Asparagine Amidase from Flavobacterium Meningosepticum
1990
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
34845.879
PEPTIDE-N(4)-(N-ACETYL-BETA-D-GLUCOSAMINYL)ASPARAGINE AMIDASE F
3.5.1.52
1
man
polymer
18.015
water
230
nat
water
no
no
APADNTVNIKTFDKVKNAFGDGLSQSAEGTFTFPADVTTVKTIKMFIKNECPNKTCDEWDRYANVYVKNKTTGEWYEIGR
FITPYWVGTEKLPRGLEIDVTDFKSLLSGNTELKIYTETWLAKGREYSVDFDIVYGTPDYKYSAVVPVIQYNKSSIDGVP
YGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEWCFRTHTIAINNANTFQHQLGALGCSANPINNQS
PGNWTPDRAGWCPGMAVPTRIDVLNNSLTGSTFSYEYKFQSWTNNGTNGDAFYAISSFVIAKSNTPISAPVVTN
APADNTVNIKTFDKVKNAFGDGLSQSAEGTFTFPADVTTVKTIKMFIKNECPNKTCDEWDRYANVYVKNKTTGEWYEIGR
FITPYWVGTEKLPRGLEIDVTDFKSLLSGNTELKIYTETWLAKGREYSVDFDIVYGTPDYKYSAVVPVIQYNKSSIDGVP
YGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEWCFRTHTIAINNANTFQHQLGALGCSANPINNQS
PGNWTPDRAGWCPGMAVPTRIDVLNNSLTGSTFSYEYKFQSWTNNGTNGDAFYAISSFVIAKSNTPISAPVVTN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Elizabethkingia
sample
238
Elizabethkingia meningoseptica
2.52
51.17
repository
Initial release
Version format compliance
Version format compliance
1
0
1995-01-26
1
1
2008-03-24
1
2
2011-07-13
Y
1994-10-06
REL
REL
HOH
water
RESIDUE TRP 86 IS THE CENTRAL RESIDUE OF CLASSICAL
GAMMA TURN (PHI = 63, PSI = -42).
RESIDUES CYS 231 - THR 245 FORM A WIDE OMEGA LOOP.
HOH
400
2
HOH
HOH
400
A
HOH
401
2
HOH
HOH
401
A
HOH
402
2
HOH
HOH
402
A
HOH
403
2
HOH
HOH
403
A
HOH
404
2
HOH
HOH
404
A
HOH
405
2
HOH
HOH
405
A
HOH
406
2
HOH
HOH
406
A
HOH
407
2
HOH
HOH
407
A
HOH
408
2
HOH
HOH
408
A
HOH
409
2
HOH
HOH
409
A
HOH
410
2
HOH
HOH
410
A
HOH
411
2
HOH
HOH
411
A
HOH
412
2
HOH
HOH
412
A
HOH
413
2
HOH
HOH
413
A
HOH
414
2
HOH
HOH
414
A
HOH
415
2
HOH
HOH
415
A
HOH
416
2
HOH
HOH
416
A
HOH
417
2
HOH
HOH
417
A
HOH
418
2
HOH
HOH
418
A
HOH
419
2
HOH
HOH
419
A
HOH
420
2
HOH
HOH
420
A
HOH
421
2
HOH
HOH
421
A
HOH
422
2
HOH
HOH
422
A
HOH
423
2
HOH
HOH
423
A
HOH
424
2
HOH
HOH
424
A
HOH
425
2
HOH
HOH
425
A
HOH
426
2
HOH
HOH
426
A
HOH
427
2
HOH
HOH
427
A
HOH
428
2
HOH
HOH
428
A
HOH
429
2
HOH
HOH
429
A
HOH
430
2
HOH
HOH
430
A
HOH
431
2
HOH
HOH
431
A
HOH
432
2
HOH
HOH
432
A
HOH
433
2
HOH
HOH
433
A
HOH
434
2
HOH
HOH
434
A
HOH
435
2
HOH
HOH
435
A
HOH
436
2
HOH
HOH
436
A
HOH
437
2
HOH
HOH
437
A
HOH
438
2
HOH
HOH
438
A
HOH
439
2
HOH
HOH
439
A
HOH
440
2
HOH
HOH
440
A
HOH
441
2
HOH
HOH
441
A
HOH
442
2
HOH
HOH
442
A
HOH
444
2
HOH
HOH
444
A
HOH
445
2
HOH
HOH
445
A
HOH
446
2
HOH
HOH
446
A
HOH
447
2
HOH
HOH
447
A
HOH
448
2
HOH
HOH
448
A
HOH
449
2
HOH
HOH
449
A
HOH
450
2
HOH
HOH
450
A
HOH
451
2
HOH
HOH
451
A
HOH
452
2
HOH
HOH
452
A
HOH
453
2
HOH
HOH
453
A
HOH
454
2
HOH
HOH
454
A
HOH
455
2
HOH
HOH
455
A
HOH
456
2
HOH
HOH
456
A
HOH
457
2
HOH
HOH
457
A
HOH
458
2
HOH
HOH
458
A
HOH
459
2
HOH
HOH
459
A
HOH
460
2
HOH
HOH
460
A
HOH
461
2
HOH
HOH
461
A
HOH
462
2
HOH
HOH
462
A
HOH
463
2
HOH
HOH
463
A
HOH
464
2
HOH
HOH
464
A
HOH
466
2
HOH
HOH
466
A
HOH
467
2
HOH
HOH
467
A
HOH
468
2
HOH
HOH
468
A
HOH
469
2
HOH
HOH
469
A
HOH
470
2
HOH
HOH
470
A
HOH
471
2
HOH
HOH
471
A
HOH
472
2
HOH
HOH
472
A
HOH
473
2
HOH
HOH
473
A
HOH
474
2
HOH
HOH
474
A
HOH
475
2
HOH
HOH
475
A
HOH
476
2
HOH
HOH
476
A
HOH
477
2
HOH
HOH
477
A
HOH
478
2
HOH
HOH
478
A
HOH
479
2
HOH
HOH
479
A
HOH
480
2
HOH
HOH
480
A
HOH
481
2
HOH
HOH
481
A
HOH
482
2
HOH
HOH
482
A
HOH
483
2
HOH
HOH
483
A
HOH
484
2
HOH
HOH
484
A
HOH
485
2
HOH
HOH
485
A
HOH
486
2
HOH
HOH
486
A
HOH
487
2
HOH
HOH
487
A
HOH
488
2
HOH
HOH
488
A
HOH
489
2
HOH
HOH
489
A
HOH
490
2
HOH
HOH
490
A
HOH
491
2
HOH
HOH
491
A
HOH
492
2
HOH
HOH
492
A
HOH
493
2
HOH
HOH
493
A
HOH
494
2
HOH
HOH
494
A
HOH
495
2
HOH
HOH
495
A
HOH
496
2
HOH
HOH
496
A
HOH
499
2
HOH
HOH
499
A
HOH
500
2
HOH
HOH
500
A
HOH
501
2
HOH
HOH
501
A
HOH
503
2
HOH
HOH
503
A
HOH
504
2
HOH
HOH
504
A
HOH
505
2
HOH
HOH
505
A
HOH
506
2
HOH
HOH
506
A
HOH
507
2
HOH
HOH
507
A
HOH
508
2
HOH
HOH
508
A
HOH
509
2
HOH
HOH
509
A
HOH
510
2
HOH
HOH
510
A
HOH
511
2
HOH
HOH
511
A
HOH
512
2
HOH
HOH
512
A
HOH
513
2
HOH
HOH
513
A
HOH
514
2
HOH
HOH
514
A
HOH
515
2
HOH
HOH
515
A
HOH
516
2
HOH
HOH
516
A
HOH
517
2
HOH
HOH
517
A
HOH
518
2
HOH
HOH
518
A
HOH
519
2
HOH
HOH
519
A
HOH
520
2
HOH
HOH
520
A
HOH
521
2
HOH
HOH
521
A
HOH
522
2
HOH
HOH
522
A
HOH
523
2
HOH
HOH
523
A
HOH
524
2
HOH
HOH
524
A
HOH
525
2
HOH
HOH
525
A
HOH
526
2
HOH
HOH
526
A
HOH
527
2
HOH
HOH
527
A
HOH
528
2
HOH
HOH
528
A
HOH
529
2
HOH
HOH
529
A
HOH
530
2
HOH
HOH
530
A
HOH
531
2
HOH
HOH
531
A
HOH
532
2
HOH
HOH
532
A
HOH
533
2
HOH
HOH
533
A
HOH
534
2
HOH
HOH
534
A
HOH
535
2
HOH
HOH
535
A
HOH
536
2
HOH
HOH
536
A
HOH
537
2
HOH
HOH
537
A
HOH
538
2
HOH
HOH
538
A
HOH
539
2
HOH
HOH
539
A
HOH
541
2
HOH
HOH
541
A
HOH
542
2
HOH
HOH
542
A
HOH
543
2
HOH
HOH
543
A
HOH
544
2
HOH
HOH
544
A
HOH
545
2
HOH
HOH
545
A
HOH
546
2
HOH
HOH
546
A
HOH
547
2
HOH
HOH
547
A
HOH
548
2
HOH
HOH
548
A
HOH
549
2
HOH
HOH
549
A
HOH
550
2
HOH
HOH
550
A
HOH
551
2
HOH
HOH
551
A
HOH
552
2
HOH
HOH
552
A
HOH
553
2
HOH
HOH
553
A
HOH
554
2
HOH
HOH
554
A
HOH
555
2
HOH
HOH
555
A
HOH
556
2
HOH
HOH
556
A
HOH
557
2
HOH
HOH
557
A
HOH
558
2
HOH
HOH
558
A
HOH
559
2
HOH
HOH
559
A
HOH
560
2
HOH
HOH
560
A
HOH
561
2
HOH
HOH
561
A
HOH
562
2
HOH
HOH
562
A
HOH
563
2
HOH
HOH
563
A
HOH
564
2
HOH
HOH
564
A
HOH
565
2
HOH
HOH
565
A
HOH
566
2
HOH
HOH
566
A
HOH
567
2
HOH
HOH
567
A
HOH
568
2
HOH
HOH
568
A
HOH
569
2
HOH
HOH
569
A
HOH
570
2
HOH
HOH
570
A
HOH
571
2
HOH
HOH
571
A
HOH
573
2
HOH
HOH
573
A
HOH
574
2
HOH
HOH
574
A
HOH
575
2
HOH
HOH
575
A
HOH
576
2
HOH
HOH
576
A
HOH
577
2
HOH
HOH
577
A
HOH
578
2
HOH
HOH
578
A
HOH
579
2
HOH
HOH
579
A
HOH
580
2
HOH
HOH
580
A
HOH
581
2
HOH
HOH
581
A
HOH
582
2
HOH
HOH
582
A
HOH
583
2
HOH
HOH
583
A
HOH
584
2
HOH
HOH
584
A
HOH
585
2
HOH
HOH
585
A
HOH
587
2
HOH
HOH
587
A
HOH
588
2
HOH
HOH
588
A
HOH
589
2
HOH
HOH
589
A
HOH
590
2
HOH
HOH
590
A
HOH
591
2
HOH
HOH
591
A
HOH
593
2
HOH
HOH
593
A
HOH
594
2
HOH
HOH
594
A
HOH
595
2
HOH
HOH
595
A
HOH
596
2
HOH
HOH
596
A
HOH
601
2
HOH
HOH
601
A
HOH
602
2
HOH
HOH
602
A
HOH
603
2
HOH
HOH
603
A
HOH
604
2
HOH
HOH
604
A
HOH
605
2
HOH
HOH
605
A
HOH
606
2
HOH
HOH
606
A
HOH
608
2
HOH
HOH
608
A
HOH
609
2
HOH
HOH
609
A
HOH
610
2
HOH
HOH
610
A
HOH
611
2
HOH
HOH
611
A
HOH
612
2
HOH
HOH
612
A
HOH
613
2
HOH
HOH
613
A
HOH
616
2
HOH
HOH
616
A
HOH
618
2
HOH
HOH
618
A
HOH
621
2
HOH
HOH
621
A
HOH
622
2
HOH
HOH
622
A
HOH
623
2
HOH
HOH
623
A
HOH
624
2
HOH
HOH
624
A
HOH
625
2
HOH
HOH
625
A
HOH
626
2
HOH
HOH
626
A
HOH
628
2
HOH
HOH
628
A
HOH
629
2
HOH
HOH
629
A
HOH
632
2
HOH
HOH
632
A
HOH
633
2
HOH
HOH
633
A
HOH
638
2
HOH
HOH
638
A
HOH
639
2
HOH
HOH
639
A
HOH
640
2
HOH
HOH
640
A
HOH
641
2
HOH
HOH
641
A
HOH
642
2
HOH
HOH
642
A
HOH
645
2
HOH
HOH
645
A
HOH
648
2
HOH
HOH
648
A
HOH
649
2
HOH
HOH
649
A
HOH
650
2
HOH
HOH
650
A
HOH
656
2
HOH
HOH
656
A
HOH
658
2
HOH
HOH
658
A
HOH
660
2
HOH
HOH
660
A
HOH
668
2
HOH
HOH
668
A
HOH
669
2
HOH
HOH
669
A
HOH
672
2
HOH
HOH
672
A
HOH
675
2
HOH
HOH
675
A
HOH
676
2
HOH
HOH
676
A
HOH
677
2
HOH
HOH
677
A
n
1
1
A
n
2
2
A
n
3
3
A
ASP
4
n
4
ASP
4
A
ASN
5
n
5
ASN
5
A
THR
6
n
6
THR
6
A
VAL
7
n
7
VAL
7
A
ASN
8
n
8
ASN
8
A
ILE
9
n
9
ILE
9
A
LYS
10
n
10
LYS
10
A
THR
11
n
11
THR
11
A
PHE
12
n
12
PHE
12
A
ASP
13
n
13
ASP
13
A
LYS
14
n
14
LYS
14
A
VAL
15
n
15
VAL
15
A
LYS
16
n
16
LYS
16
A
ASN
17
n
17
ASN
17
A
ALA
18
n
18
ALA
18
A
PHE
19
n
19
PHE
19
A
GLY
20
n
20
GLY
20
A
ASP
21
n
21
ASP
21
A
GLY
22
n
22
GLY
22
A
LEU
23
n
23
LEU
23
A
SER
24
n
24
SER
24
A
GLN
25
n
25
GLN
25
A
SER
26
n
26
SER
26
A
ALA
27
n
27
ALA
27
A
GLU
28
n
28
GLU
28
A
GLY
29
n
29
GLY
29
A
THR
30
n
30
THR
30
A
PHE
31
n
31
PHE
31
A
THR
32
n
32
THR
32
A
PHE
33
n
33
PHE
33
A
PRO
34
n
34
PRO
34
A
ALA
35
n
35
ALA
35
A
ASP
36
n
36
ASP
36
A
VAL
37
n
37
VAL
37
A
THR
38
n
38
THR
38
A
THR
39
n
39
THR
39
A
VAL
40
n
40
VAL
40
A
LYS
41
n
41
LYS
41
A
THR
42
n
42
THR
42
A
ILE
43
n
43
ILE
43
A
LYS
44
n
44
LYS
44
A
MET
45
n
45
MET
45
A
PHE
46
n
46
PHE
46
A
ILE
47
n
47
ILE
47
A
LYS
48
n
48
LYS
48
A
ASN
49
n
49
ASN
49
A
GLU
50
n
50
GLU
50
A
CYS
51
n
51
CYS
51
A
PRO
52
n
52
PRO
52
A
ASN
53
n
53
ASN
53
A
LYS
54
n
54
LYS
54
A
THR
55
n
55
THR
55
A
CYS
56
n
56
CYS
56
A
ASP
57
n
57
ASP
57
A
GLU
58
n
58
GLU
58
A
TRP
59
n
59
TRP
59
A
ASP
60
n
60
ASP
60
A
ARG
61
n
61
ARG
61
A
TYR
62
n
62
TYR
62
A
ALA
63
n
63
ALA
63
A
ASN
64
n
64
ASN
64
A
VAL
65
n
65
VAL
65
A
TYR
66
n
66
TYR
66
A
VAL
67
n
67
VAL
67
A
LYS
68
n
68
LYS
68
A
ASN
69
n
69
ASN
69
A
LYS
70
n
70
LYS
70
A
THR
71
n
71
THR
71
A
THR
72
n
72
THR
72
A
GLY
73
n
73
GLY
73
A
GLU
74
n
74
GLU
74
A
TRP
75
n
75
TRP
75
A
TYR
76
n
76
TYR
76
A
GLU
77
n
77
GLU
77
A
ILE
78
n
78
ILE
78
A
GLY
79
n
79
GLY
79
A
ARG
80
n
80
ARG
80
A
PHE
81
n
81
PHE
81
A
ILE
82
n
82
ILE
82
A
THR
83
n
83
THR
83
A
PRO
84
n
84
PRO
84
A
TYR
85
n
85
TYR
85
A
TRP
86
n
86
TRP
86
A
VAL
87
n
87
VAL
87
A
GLY
88
n
88
GLY
88
A
THR
89
n
89
THR
89
A
GLU
90
n
90
GLU
90
A
LYS
91
n
91
LYS
91
A
LEU
92
n
92
LEU
92
A
PRO
93
n
93
PRO
93
A
ARG
94
n
94
ARG
94
A
GLY
95
n
95
GLY
95
A
LEU
96
n
96
LEU
96
A
GLU
97
n
97
GLU
97
A
ILE
98
n
98
ILE
98
A
ASP
99
n
99
ASP
99
A
VAL
100
n
100
VAL
100
A
THR
101
n
101
THR
101
A
ASP
102
n
102
ASP
102
A
PHE
103
n
103
PHE
103
A
LYS
104
n
104
LYS
104
A
SER
105
n
105
SER
105
A
LEU
106
n
106
LEU
106
A
LEU
107
n
107
LEU
107
A
SER
108
n
108
SER
108
A
GLY
109
n
109
GLY
109
A
ASN
110
n
110
ASN
110
A
THR
111
n
111
THR
111
A
GLU
112
n
112
GLU
112
A
LEU
113
n
113
LEU
113
A
LYS
114
n
114
LYS
114
A
ILE
115
n
115
ILE
115
A
TYR
116
n
116
TYR
116
A
THR
117
n
117
THR
117
A
GLU
118
n
118
GLU
118
A
THR
119
n
119
THR
119
A
TRP
120
n
120
TRP
120
A
LEU
121
n
121
LEU
121
A
ALA
122
n
122
ALA
122
A
LYS
123
n
123
LYS
123
A
GLY
124
n
124
GLY
124
A
ARG
125
n
125
ARG
125
A
GLU
126
n
126
GLU
126
A
TYR
127
n
127
TYR
127
A
SER
128
n
128
SER
128
A
VAL
129
n
129
VAL
129
A
ASP
130
n
130
ASP
130
A
PHE
131
n
131
PHE
131
A
ASP
132
n
132
ASP
132
A
ILE
133
n
133
ILE
133
A
VAL
134
n
134
VAL
134
A
TYR
135
n
135
TYR
135
A
GLY
136
n
136
GLY
136
A
THR
137
n
137
THR
137
A
PRO
138
n
138
PRO
138
A
ASP
139
n
139
ASP
139
A
TYR
140
n
140
TYR
140
A
LYS
141
n
141
LYS
141
A
TYR
142
n
142
TYR
142
A
SER
143
n
143
SER
143
A
ALA
144
n
144
ALA
144
A
VAL
145
n
145
VAL
145
A
VAL
146
n
146
VAL
146
A
PRO
147
n
147
PRO
147
A
VAL
148
n
148
VAL
148
A
ILE
149
n
149
ILE
149
A
GLN
150
n
150
GLN
150
A
TYR
151
n
151
TYR
151
A
ASN
152
n
152
ASN
152
A
LYS
153
n
153
LYS
153
A
SER
154
n
154
SER
154
A
SER
155
n
155
SER
155
A
ILE
156
n
156
ILE
156
A
ASP
157
n
157
ASP
157
A
GLY
158
n
158
GLY
158
A
VAL
159
n
159
VAL
159
A
PRO
160
n
160
PRO
160
A
TYR
161
n
161
TYR
161
A
GLY
162
n
162
GLY
162
A
LYS
163
n
163
LYS
163
A
ALA
164
n
164
ALA
164
A
HIS
165
n
165
HIS
165
A
THR
166
n
166
THR
166
A
LEU
167
n
167
LEU
167
A
GLY
168
n
168
GLY
168
A
LEU
169
n
169
LEU
169
A
LYS
170
n
170
LYS
170
A
LYS
171
n
171
LYS
171
A
ASN
172
n
172
ASN
172
A
ILE
173
n
173
ILE
173
A
GLN
174
n
174
GLN
174
A
LEU
175
n
175
LEU
175
A
PRO
176
n
176
PRO
176
A
THR
177
n
177
THR
177
A
ASN
178
n
178
ASN
178
A
THR
179
n
179
THR
179
A
GLU
180
n
180
GLU
180
A
LYS
181
n
181
LYS
181
A
ALA
182
n
182
ALA
182
A
TYR
183
n
183
TYR
183
A
LEU
184
n
184
LEU
184
A
ARG
185
n
185
ARG
185
A
THR
186
n
186
THR
186
A
THR
187
n
187
THR
187
A
ILE
188
n
188
ILE
188
A
SER
189
n
189
SER
189
A
GLY
190
n
190
GLY
190
A
TRP
191
n
191
TRP
191
A
GLY
192
n
192
GLY
192
A
HIS
193
n
193
HIS
193
A
ALA
194
n
194
ALA
194
A
LYS
195
n
195
LYS
195
A
PRO
196
n
196
PRO
196
A
TYR
197
n
197
TYR
197
A
ASP
198
n
198
ASP
198
A
ALA
199
n
199
ALA
199
A
GLY
200
n
200
GLY
200
A
SER
201
n
201
SER
201
A
ARG
202
n
202
ARG
202
A
GLY
203
n
203
GLY
203
A
CYS
204
n
204
CYS
204
A
ALA
205
n
205
ALA
205
A
GLU
206
n
206
GLU
206
A
TRP
207
n
207
TRP
207
A
CYS
208
n
208
CYS
208
A
PHE
209
n
209
PHE
209
A
ARG
210
n
210
ARG
210
A
THR
211
n
211
THR
211
A
HIS
212
n
212
HIS
212
A
THR
213
n
213
THR
213
A
ILE
214
n
214
ILE
214
A
ALA
215
n
215
ALA
215
A
ILE
216
n
216
ILE
216
A
ASN
217
n
217
ASN
217
A
ASN
218
n
218
ASN
218
A
ALA
219
n
219
ALA
219
A
ASN
220
n
220
ASN
220
A
THR
221
n
221
THR
221
A
PHE
222
n
222
PHE
222
A
GLN
223
n
223
GLN
223
A
HIS
224
n
224
HIS
224
A
GLN
225
n
225
GLN
225
A
LEU
226
n
226
LEU
226
A
GLY
227
n
227
GLY
227
A
ALA
228
n
228
ALA
228
A
LEU
229
n
229
LEU
229
A
GLY
230
n
230
GLY
230
A
CYS
231
n
231
CYS
231
A
SER
232
n
232
SER
232
A
ALA
233
n
233
ALA
233
A
ASN
234
n
234
ASN
234
A
PRO
235
n
235
PRO
235
A
ILE
236
n
236
ILE
236
A
ASN
237
n
237
ASN
237
A
ASN
238
n
238
ASN
238
A
GLN
239
n
239
GLN
239
A
SER
240
n
240
SER
240
A
PRO
241
n
241
PRO
241
A
GLY
242
n
242
GLY
242
A
ASN
243
n
243
ASN
243
A
TRP
244
n
244
TRP
244
A
THR
245
n
245
THR
245
A
PRO
246
n
246
PRO
246
A
ASP
247
n
247
ASP
247
A
ARG
248
n
248
ARG
248
A
ALA
249
n
249
ALA
249
A
GLY
250
n
250
GLY
250
A
TRP
251
n
251
TRP
251
A
CYS
252
n
252
CYS
252
A
PRO
253
n
253
PRO
253
A
GLY
254
n
254
GLY
254
A
MET
255
n
255
MET
255
A
ALA
256
n
256
ALA
256
A
VAL
257
n
257
VAL
257
A
PRO
258
n
258
PRO
258
A
THR
259
n
259
THR
259
A
ARG
260
n
260
ARG
260
A
ILE
261
n
261
ILE
261
A
ASP
262
n
262
ASP
262
A
VAL
263
n
263
VAL
263
A
LEU
264
n
264
LEU
264
A
ASN
265
n
265
ASN
265
A
ASN
266
n
266
ASN
266
A
SER
267
n
267
SER
267
A
LEU
268
n
268
LEU
268
A
THR
269
n
269
THR
269
A
GLY
270
n
270
GLY
270
A
SER
271
n
271
SER
271
A
THR
272
n
272
THR
272
A
PHE
273
n
273
PHE
273
A
SER
274
n
274
SER
274
A
TYR
275
n
275
TYR
275
A
GLU
276
n
276
GLU
276
A
TYR
277
n
277
TYR
277
A
LYS
278
n
278
LYS
278
A
PHE
279
n
279
PHE
279
A
GLN
280
n
280
GLN
280
A
SER
281
n
281
SER
281
A
TRP
282
n
282
TRP
282
A
THR
283
n
283
THR
283
A
ASN
284
n
284
ASN
284
A
ASN
285
n
285
ASN
285
A
GLY
286
n
286
GLY
286
A
THR
287
n
287
THR
287
A
ASN
288
n
288
ASN
288
A
GLY
289
n
289
GLY
289
A
ASP
290
n
290
ASP
290
A
ALA
291
n
291
ALA
291
A
PHE
292
n
292
PHE
292
A
TYR
293
n
293
TYR
293
A
ALA
294
n
294
ALA
294
A
ILE
295
n
295
ILE
295
A
SER
296
n
296
SER
296
A
SER
297
n
297
SER
297
A
PHE
298
n
298
PHE
298
A
VAL
299
n
299
VAL
299
A
ILE
300
n
300
ILE
300
A
ALA
301
n
301
ALA
301
A
LYS
302
n
302
LYS
302
A
SER
303
n
303
SER
303
A
ASN
304
n
304
ASN
304
A
THR
305
n
305
THR
305
A
PRO
306
n
306
PRO
306
A
ILE
307
n
307
ILE
307
A
SER
308
n
308
SER
308
A
ALA
309
n
309
ALA
309
A
PRO
310
n
310
PRO
310
A
VAL
311
n
311
VAL
311
A
VAL
312
n
312
VAL
312
A
THR
313
n
313
THR
313
A
ASN
314
n
314
ASN
314
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
98
A
O
ILE
98
A
N
MET
45
A
N
MET
45
A
N
LYS
48
A
N
LYS
48
A
O
SER
128
A
O
SER
128
A
N
ILE
133
A
N
ILE
133
A
O
VAL
7
A
O
VAL
7
A
O
ILE
98
A
O
ILE
98
A
N
MET
45
A
N
MET
45
A
N
LYS
48
A
N
LYS
48
A
O
SER
128
A
O
SER
128
A
O
TYR
127
A
O
TYR
127
A
N
VAL
15
A
N
VAL
15
A
N
PHE
33
A
N
PHE
33
A
O
GLY
109
A
O
GLY
109
A
N
TYR
116
A
N
TYR
116
A
O
ASN
64
A
O
ASN
64
A
O
VAL
67
A
O
VAL
67
A
N
TYR
76
A
N
TYR
76
A
O
ASP
262
A
O
ASP
262
A
N
LEU
184
A
N
LEU
184
A
N
TRP
191
A
N
TRP
191
A
O
PHE
292
A
O
PHE
292
A
O
SER
303
A
O
SER
303
A
N
TYR
142
A
N
TYR
142
A
O
ASP
262
A
O
ASP
262
A
N
LEU
184
A
N
LEU
184
A
N
TRP
191
A
N
TRP
191
A
O
PHE
292
A
O
PHE
292
A
O
TYR
293
A
O
TYR
293
A
N
VAL
159
A
N
VAL
159
A
N
LEU
226
A
N
LEU
226
A
O
ARG
210
A
O
ARG
210
A
N
ALA
215
A
N
ALA
215
A
O
GLU
276
A
O
GLU
276
A
N
TYR
275
A
N
TYR
275
A
O
LYS
171
A
O
LYS
171
A
O
GLN
174
A
O
GLN
174
A
N
VAL
311
A
N
VAL
311
A
N
ASP
198
A
N
ASP
198
A
O
ARG
202
A
O
ARG
202
1
A
CG
ASP
4
A
CG
ASP
4
1
Y
1
A
OD1
ASP
4
A
OD1
ASP
4
1
Y
1
A
OD2
ASP
4
A
OD2
ASP
4
1
Y
1
A
CG
ASN
5
A
CG
ASN
5
1
Y
1
A
OD1
ASN
5
A
OD1
ASN
5
1
Y
1
A
ND2
ASN
5
A
ND2
ASN
5
1
Y
1
A
CD1
ILE
149
A
CD1
ILE
149
0
Y
1
A
CB
THR
245
A
CB
THR
245
0
Y
1
A
OG1
THR
245
A
OG1
THR
245
0
Y
1
A
CG2
THR
245
A
CG2
THR
245
0
Y
1
A
ALA
1
A
ALA
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
ALA
3
A
ALA
3
1
Y
1
6.28
0.90
118.30
124.58
A
A
A
CB
CG
OD1
ASP
ASP
ASP
13
13
13
N
1
-7.45
0.90
118.30
110.85
A
A
A
CB
CG
OD2
ASP
ASP
ASP
13
13
13
N
1
-5.90
0.90
118.30
112.40
A
A
A
CB
CG
OD2
ASP
ASP
ASP
36
36
36
N
1
5.73
0.90
118.30
124.03
A
A
A
CB
CG
OD2
ASP
ASP
ASP
130
130
130
N
1
-5.82
0.90
118.30
112.48
A
A
A
CB
CG
OD1
ASP
ASP
ASP
157
157
157
N
1
6.05
0.90
118.30
124.35
A
A
A
CB
CG
OD1
ASP
ASP
ASP
198
198
198
N
1
-6.20
0.90
118.30
112.10
A
A
A
CB
CG
OD2
ASP
ASP
ASP
198
198
198
N
1
6.75
0.90
118.30
125.05
A
A
A
CB
CG
OD1
ASP
ASP
ASP
247
247
247
N
1
-5.95
0.90
118.30
112.35
A
A
A
CB
CG
OD2
ASP
ASP
ASP
247
247
247
N
1
A
A
CD
OE1
GLU
GLU
126
126
0.112
0.011
1.252
1.364
N
1
A
THR
11
-118.17
-94.09
1
A
TRP
86
65.75
-44.46
1
A
ASN
152
-152.03
23.74
0.168
1.8
20.0
27995
1
0.0
1.8
20.0
230
2667
0
0
2437
refinement
TNT
PEPTIDE-N(4)-(N-ACETYL-BETA-D-GLUCOSAMINYL) ASPARAGINE AMIDASE (N-GLYCOSIDASE F) (PNG-ASE F) (E.C.3.5.1.52)
THE THREE-DIMENSIONAL STRUCTURE OF PNGASE F, A GLYCOSYLASPARAGINASE FROM FLAVOBACTERIUM MENINGOSEPTICUM
1
N
N
2
N
N
A
CYS
51
A
CYS
51
HELX_P
A
THR
55
A
THR
55
5
1
5
A
THR
101
A
THR
101
HELX_P
A
LYS
104
A
LYS
104
5
2
4
A
SER
154
A
SER
154
HELX_P
A
GLY
158
A
GLY
158
5
3
5
A
GLY
230
A
GLY
230
HELX_P
A
ASN
234
A
ASN
234
5
4
5
A
ASN
265
A
ASN
265
HELX_P
A
THR
269
A
THR
269
5
5
5
disulf
2.000
A
CYS
51
A
SG
CYS
51
1_555
A
CYS
56
A
SG
CYS
56
1_555
disulf
2.072
A
CYS
204
A
SG
CYS
204
1_555
A
CYS
208
A
SG
CYS
208
1_555
disulf
2.072
A
CYS
231
A
SG
CYS
231
1_555
A
CYS
252
A
SG
CYS
252
1_555
ENDOGLYCOSIDASE
ENDOGLYCOSIDASE
A
LYS
195
A
LYS
195
1
A
PRO
196
A
PRO
196
0.97
A
CYS
204
A
CYS
204
1
A
ALA
205
A
ALA
205
5.63
A
SER
240
A
SER
240
1
A
PRO
241
A
PRO
241
7.84
PNGF_FLAME
UNP
1
1
P21163
MRKLLIFSISAYLMAGIVSCKGVDSATPVTEDRLALNAVNAPADNTVNIKTFDKVKNAFGDGLSQSAEGTFTFPADVTTV
KTIKMFIKNECPNKTCDEWDRYANVYVKNKTTGEWYEIGRFITPYWVGTEKLPRGLEIDVTDFKSLLSGNTELKIYTETW
LAKGREYSVDFDIVYGTPDYKYSAVVPVIQYNKSSIDGVPYGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKPYDAG
SRGCAEWCFRTHTIAINNANTFQHQLGALGCSANPINNQSPGNWAPDRAGWCPGMAVPTRIDVLNNSLTGSTFSYEYKFQ
SWTNNGTNGDAFYAISSFVIAKSNTPISAPVVTN
41
354
1PGS
1
314
P21163
A
1
1
314
1
ALA
CONFLICT
THR
245
1PGS
A
P21163
UNP
285
245
4
4
4
4
4
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
96
A
LEU
96
A
ASP
99
A
ASP
99
A
VAL
40
A
VAL
40
A
ASN
49
A
ASN
49
A
ARG
125
A
ARG
125
A
TYR
135
A
TYR
135
A
THR
6
A
THR
6
A
LYS
10
A
LYS
10
A
LEU
96
A
LEU
96
A
ASP
99
A
ASP
99
A
VAL
40
A
VAL
40
A
ASN
49
A
ASN
49
A
ARG
125
A
ARG
125
A
TYR
135
A
TYR
135
A
VAL
15
A
VAL
15
A
ASN
17
A
ASN
17
A
SER
26
A
SER
26
A
PHE
33
A
PHE
33
A
GLY
109
A
GLY
109
A
THR
117
A
THR
117
A
TYR
62
A
TYR
62
A
LYS
68
A
LYS
68
A
TRP
75
A
TRP
75
A
ILE
82
A
ILE
82
A
ARG
260
A
ARG
260
A
VAL
263
A
VAL
263
A
LYS
181
A
LYS
181
A
TRP
191
A
TRP
191
A
PHE
292
A
PHE
292
A
SER
303
A
SER
303
A
TYR
142
A
TYR
142
A
TYR
151
A
TYR
151
A
ARG
260
A
ARG
260
A
VAL
263
A
VAL
263
A
LYS
181
A
LYS
181
A
TRP
191
A
TRP
191
A
PHE
292
A
PHE
292
A
SER
303
A
SER
303
A
VAL
159
A
VAL
159
A
PRO
160
A
PRO
160
A
ALA
219
A
ALA
219
A
LEU
226
A
LEU
226
A
ARG
210
A
ARG
210
A
ILE
216
A
ILE
216
A
THR
272
A
THR
272
A
LYS
278
A
LYS
278
A
LYS
170
A
LYS
170
A
GLN
174
A
GLN
174
A
VAL
311
A
VAL
311
A
THR
313
A
THR
313
A
HIS
193
A
HIS
193
A
ASP
198
A
ASP
198
A
ARG
202
A
ARG
202
A
ALA
205
A
ALA
205
18
P 21 21 2