1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kumar, R.A. Ikemoto, N. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C6 H13 N O4 163.172 4-amino-4,6-dideoxy-beta-D-glucopyranose 4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPYRANOSIDE; 4-amino-4,6-dideoxy-beta-D-glucose; 4-amino-4,6-dideoxy-D-glucose; 4-amino-4,6-dideoxy-glucose D-saccharide, beta linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C6 H12 O4 148.157 2-deoxy-alpha-L-fucopyranose 2-DEOXY-ALPHA-L-FUCOPYRANOSIDE; 2,6-dideoxy-alpha-L-lyxo-hexopyranose; 2,6-dideoxy-alpha-L-galactopyranose; 2,6-dideoxy-alpha-L-talopyranose; 2-deoxy-alpha-L-fucose; 2-deoxy-L-fucose; 2-deoxy-fucose L-saccharide, alpha linking C13 H15 N O5 265.262 4,5-DIMETHOXY-N-(2'-METHOXYPROPENOYL ANTHRANILATE) non-polymer C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C9 H19 N O3 189.252 2,4-dideoxy-3-O-methyl-4-(propan-2-ylamino)-alpha-L-threo-pentopyranose 2,4-DIDEOXY-4-[2-(PROPYL)AMINO]-3-O-METHYL ALPHA-L-THREO-PENTOPYRANOSIDE; 2,4-dideoxy-3-O-methyl-4-(propan-2-ylamino)-alpha-L-threo-pentose; 2,4-dideoxy-3-O-methyl-4-(propan-2-ylamino)-L-threo-pentose; 2,4-dideoxy-3-O-methyl-4-(propan-2-ylamino)-threo-pentose L-saccharide, alpha linking C18 H17 N O4 S3 407.527 [1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER non-polymer C7 H14 O3 S 178.249 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose 2,6-DIDEOXY-4-THIOMETHYL-BETA-D-RIBOHEXOPYRANOSIDE; 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexose; 2,6-dideoxy-4-S-methyl-4-thio-D-ribo-hexose; 2,6-dideoxy-4-S-methyl-4-thio-ribo-hexose D-saccharide, beta linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 R C N 38 R C N 39 S C N 40 S C N 41 R C N 42 N C N 43 N O N 44 N O N 45 N O N 46 N N N 47 N O N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N O N 62 N P N 63 N O N 64 N O N 65 N O N 66 N C N 67 R C N 68 N O N 69 S C N 70 N O N 71 N C N 72 R C N 73 N N N 74 N C N 75 N O N 76 N N N 77 N C N 78 N N N 79 N C N 80 N C N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N O N 96 N P N 97 N O N 98 N O N 99 N O N 100 N C N 101 R C N 102 N O N 103 S C N 104 N O N 105 N C N 106 R C Y 107 N N Y 108 N C Y 109 N N Y 110 N C N 111 N C N 112 N O N 113 N N N 114 N C N 115 N N N 116 N N Y 117 N C N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 R C N 133 N C N 134 S C N 135 S C N 136 S C N 137 N C N 138 N O N 139 N O N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N C Y 155 N C Y 156 N C Y 157 N C Y 158 N C Y 159 N C Y 160 N C N 161 N C N 162 N C N 163 N C N 164 N C N 165 N C N 166 N C N 167 N N N 168 N O N 169 N O N 170 N O N 171 N O N 172 N O N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N O N 189 N P N 190 N O N 191 N O N 192 N O N 193 N C N 194 R C N 195 N O N 196 S C N 197 N O N 198 N C N 199 R C N 200 N N N 201 N C N 202 N O N 203 N N N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 R C N 225 N C N 226 S C N 227 S C N 228 N C N 229 N C N 230 N C N 231 N C N 232 N C N 233 N O N 234 N O N 235 N N N 236 N O N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N C N 257 N C N 258 N C N 259 N C N 260 N C N 261 N C N 262 N C N 263 R C N 264 N C N 265 N C N 266 N C N 267 N C N 268 N C N 269 N C N 270 N C N 271 N C N 272 N C N 273 N C N 274 N O N 275 N O N 276 N O N 277 N O N 278 N N N 279 N S N 280 N S N 281 N S N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 R C N 300 N C N 301 S C N 302 S C N 303 R C N 304 N C N 305 N C N 306 N O N 307 N O N 308 N O N 309 N S N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing Y 121 N sing Y 122 N sing Y 123 N doub N 124 N sing Y 125 N sing N 126 N sing Y 127 N doub N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing Y 162 N doub Y 163 N sing Y 164 N sing N 165 N sing Y 166 N doub N 167 N sing Y 168 N sing N 169 N sing Y 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N trip N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N trip N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N doub N 283 N sing N 284 N sing N 285 E doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 265 173 186 10.1006/jmbi.1996.0719 9020981 Solution Structure of the Esperamicin A1-DNA Complex 1997 US J.Am.Chem.Soc. JACSAT 0004 0002-7863 116 9387 Esperamicin A1 Intercalates Into Duplex DNA from the Minor Groove 1994 10.2210/pdb1pik/pdb pdb_00001pik 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 COMPLEXED WITH ESPERAMICIN A1 2427.605 DNA (5'-D(C*GP*GP*AP*TP*CP*CP*GP)-3') 2 syn polymer 334.409 2,4-dideoxy-3-O-methyl-4-(propan-2-ylamino)-alpha-L-threo-pentopyranose-(1-2)-4-amino-4,6-dideoxy-beta-D-glucopyranose 1 man branched 265.262 4,5-DIMETHOXY-N-(2'-METHOXYPROPENOYL ANTHRANILATE) 1 syn non-polymer 178.249 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose 1 syn non-polymer 148.157 2-deoxy-alpha-L-fucopyranose 1 syn non-polymer 407.527 [1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER 1 syn non-polymer no no (DC)(DG)(DG)(DA)(DT)(DC)(DC)(DG) CGGATCCG A,B polydeoxyribonucleotide n n n n n n n n -8.457 1 19 A 1 B 18 -2.846 A_DC1:DG18_B 1 5.775 1.136 0.378 -0.362 14.246 1 19 A 2 B 17 -5.216 A_DG2:DC17_B 2 -1.669 -0.296 0.123 -0.108 -9.037 1 19 A 3 B 16 -3.424 A_DG3:DC16_B 3 2.371 0.070 -0.139 0.058 10.349 1 20 A 4 B 15 -0.598 A_DA4:DT15_B 4 -7.567 -0.151 -0.229 -0.123 0.453 1 20 A 5 B 14 -4.556 A_DT5:DA14_B 5 -18.942 -0.071 0.409 -0.150 -0.564 1 19 A 6 B 13 -2.860 A_DC6:DG13_B 6 -8.086 0.230 -0.061 -0.084 12.495 1 19 A 7 B 12 -1.576 A_DC7:DG12_B 7 -16.834 0.182 0.406 -0.080 -8.542 1 19 A 8 B 11 7.344 A_DG8:DC11_B 8 -19.814 -0.635 -1.540 -0.509 3.558 26.683 A A 1 2 14.746 B B 18 17 3.180 6.730 0.260 2.006 AA_DC1DG2:DC17DG18_BB 1 -1.553 3.402 25.789 2.507 -0.988 7.199 12.672 A A 2 3 1.062 B B 17 16 7.137 0.234 -0.896 2.024 AA_DG2DG3:DC16DC17_BB 2 -0.437 1.981 12.663 8.573 2.944 3.211 37.103 A A 3 4 12.177 B B 16 15 3.071 7.694 -1.162 0.785 AA_DG3DA4:DT15DC16_BB 3 -1.578 2.497 36.291 0.233 1.621 3.755 41.331 A A 4 5 -13.135 B B 15 14 3.761 -9.171 -0.878 0.014 AA_DA4DT5:DA14DT15_BB 4 -5.792 8.294 39.942 1.171 0.516 3.331 40.255 A A 5 6 -9.994 B B 14 13 3.530 -6.841 0.628 1.164 AA_DT5DC6:DG13DA14_BB 5 3.177 -4.642 39.571 2.511 -0.532 3.477 33.287 A A 6 7 0.837 B B 13 12 3.489 0.476 -0.254 0.428 AA_DC6DC7:DG12DG13_BB 6 -6.715 11.800 32.618 0.662 -0.761 4.784 40.611 A A 7 8 -8.991 B B 12 11 4.687 -6.150 1.683 0.854 AA_DC7DG8:DC11DG12_BB 7 10.652 -15.573 38.778 2.246 -0.666 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly pdbx_struct_oper_list struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Atomic model Data collection Derived calculations Other Structure summary Data collection Database references Structure summary 1 0 1997-03-12 1 1 2008-03-24 1 2 2011-07-13 2 0 2020-07-29 2 1 2024-05-01 _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_database_status.process_site _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession DAG 21 n C DAG 1 MAT 23 n C MAT 2 b-D-6-deoxy-Glcp4N a-L-2-deoxy-Fucp Y BNL 1996-12-11 REL REL oligosaccharide WURCS=2.0/2,2,1/[a2122m-1b_1-5_4*N][ad21h-1a_1-5_3*OC_4*NCC/3C]/1-2/a2-b1 2 PDB2Glycan 1.1.0 WURCS [][b-D-6-deoxy-Glcp4N]{[(2+1)][a-L-2-deoxy-Xylp3Me4N]{[(4+1)][<C3>]{}}} 2 PDB-CARE LINUCS C1 O2 MAT DAG 2 1 2 O1 HO2 sing n n DPA 4,5-DIMETHOXY-N-(2'-METHOXYPROPENOYL ANTHRANILATE) TMR 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose DLF 2-deoxy-alpha-L-fucopyranose MTC [1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER 4 4 7.0 298 K simulated annealing BRUNGER refinement X-PLOR 3.1 structure solution VNMR structure solution XEASY structure solution RPEAK structure solution X-PLOR 400 Varian UNITYPLUS 500 Varian UNITYPLUS 600 Varian UNITYPLUS DPA 25 3 DPA DPA 25 A TMR 22 4 TMR TMR 22 B DLF 24 5 DLF DLF 24 B MTC 26 6 MTC MTC 26 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A T 5 n 5 DT 5 A C 6 n 6 DC 6 A C 7 n 7 DC 7 A G 8 n 8 DG 8 A C 11 n 1 DC 11 B G 12 n 2 DG 12 B G 13 n 3 DG 13 B A 14 n 4 DA 14 B T 15 n 5 DT 15 B C 16 n 6 DC 16 B C 17 n 7 DC 17 B G 18 n 8 DG 18 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A B O1 O3 DPA DLF 25 24 2.14 2 A B O1 O3 DPA DLF 25 24 2.13 3 A B O1 O3 DPA DLF 25 24 2.15 4 A B O1 O3 DPA DLF 25 24 2.16 1 A DC 1 0.116 SIDE CHAIN 1 A DG 3 0.076 SIDE CHAIN 1 A DT 5 0.068 SIDE CHAIN 1 A DG 8 0.083 SIDE CHAIN 1 B DC 11 0.085 SIDE CHAIN 1 B DA 14 0.064 SIDE CHAIN 2 A DC 1 0.065 SIDE CHAIN 2 A DG 3 0.079 SIDE CHAIN 2 A DC 6 0.091 SIDE CHAIN 2 A DC 7 0.117 SIDE CHAIN 2 B DC 11 0.118 SIDE CHAIN 2 B DA 14 0.115 SIDE CHAIN 3 A DC 1 0.143 SIDE CHAIN 3 A DA 4 0.074 SIDE CHAIN 3 A DT 5 0.133 SIDE CHAIN 3 A DC 6 0.082 SIDE CHAIN 3 A DC 7 0.131 SIDE CHAIN 3 B DC 11 0.081 SIDE CHAIN 3 B DG 12 0.063 SIDE CHAIN 3 B DA 14 0.096 SIDE CHAIN 4 A DA 4 0.059 SIDE CHAIN 4 A DC 6 0.083 SIDE CHAIN 4 A DG 8 0.062 SIDE CHAIN 4 B DC 11 0.088 SIDE CHAIN 4 B DA 14 0.093 SIDE CHAIN 4 B DC 16 0.076 SIDE CHAIN 4 B DC 17 0.122 SIDE CHAIN 1 4.75 0.30 108.30 113.05 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 4.23 0.60 118.90 123.13 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 -4.52 0.70 121.90 117.38 A A A N3 C2 O2 DC DC DC 1 1 1 N 1 11.26 1.20 119.70 130.96 A A A C3' O3' P DC DC DG 1 1 2 Y 1 -4.44 0.70 108.00 103.56 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 4.81 0.70 119.90 124.71 A A A N3 C2 N2 DG DG DG 2 2 2 N 1 10.42 1.20 119.70 130.12 A A A C3' O3' P DG DG DG 2 2 3 Y 1 12.14 1.60 120.90 133.04 A A A P O5' C5' DG DG DG 3 3 3 N 1 4.79 0.70 119.90 124.69 A A A N3 C2 N2 DG DG DG 3 3 3 N 1 14.69 1.20 119.70 134.39 A A A C3' O3' P DG DG DA 3 3 4 Y 1 -4.33 0.70 108.00 103.67 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 22.02 1.20 119.70 141.72 A A A C3' O3' P DA DA DT 4 4 5 Y 1 -5.99 0.70 108.00 102.01 A A A O4' C1' N1 DT DT DT 5 5 5 N 1 10.52 1.20 119.70 130.22 A A A C3' O3' P DT DT DC 5 5 6 Y 1 4.85 0.60 118.90 123.75 A A A N1 C2 O2 DC DC DC 6 6 6 N 1 -4.74 0.70 121.90 117.16 A A A N3 C2 O2 DC DC DC 6 6 6 N 1 16.10 1.20 119.70 135.80 A A A C3' O3' P DC DC DC 6 6 7 Y 1 4.06 0.60 118.90 122.96 A A A N1 C2 O2 DC DC DC 7 7 7 N 1 -4.46 0.70 121.90 117.44 A A A N3 C2 O2 DC DC DC 7 7 7 N 1 20.39 1.20 119.70 140.09 A A A C3' O3' P DC DC DG 7 7 8 Y 1 10.00 1.60 120.90 130.90 A A A P O5' C5' DG DG DG 8 8 8 N 1 5.45 0.70 119.90 125.35 A A A N3 C2 N2 DG DG DG 8 8 8 N 1 10.41 1.20 119.70 130.11 B B B C3' O3' P DC DC DG 11 11 12 Y 1 9.69 1.60 120.90 130.59 B B B P O5' C5' DG DG DG 12 12 12 N 1 20.69 1.20 119.70 140.39 B B B C3' O3' P DG DG DG 12 12 13 Y 1 15.40 1.60 120.90 136.30 B B B P O5' C5' DG DG DG 13 13 13 N 1 12.80 1.20 119.70 132.50 B B B C3' O3' P DG DG DA 13 13 14 Y 1 18.49 1.60 120.90 139.39 B B B P O5' C5' DA DA DA 14 14 14 N 1 12.73 1.20 119.70 132.43 B B B C3' O3' P DA DA DT 14 14 15 Y 1 -3.87 0.60 122.30 118.43 B B B N3 C2 O2 DT DT DT 15 15 15 N 1 9.29 1.20 119.70 128.99 B B B C3' O3' P DT DT DC 15 15 16 Y 1 4.49 0.60 118.90 123.39 B B B N1 C2 O2 DC DC DC 16 16 16 N 1 8.81 1.20 119.70 128.51 B B B C3' O3' P DC DC DC 16 16 17 Y 1 16.32 1.60 120.90 137.22 B B B P O5' C5' DC DC DC 17 17 17 N 1 4.68 0.60 118.90 123.58 B B B N1 C2 O2 DC DC DC 17 17 17 N 1 -4.45 0.70 121.90 117.45 B B B N3 C2 O2 DC DC DC 17 17 17 N 1 14.88 1.20 119.70 134.58 B B B C3' O3' P DC DC DG 17 17 18 Y 1 15.95 1.60 120.90 136.85 B B B P O5' C5' DG DG DG 18 18 18 N 1 6.26 0.70 119.90 126.16 B B B N3 C2 N2 DG DG DG 18 18 18 N 2 5.31 0.30 108.30 113.61 A A A O4' C1' N1 DC DC DC 1 1 1 N 2 4.05 0.60 118.90 122.95 A A A N1 C2 O2 DC DC DC 1 1 1 N 2 -4.25 0.70 121.90 117.65 A A A N3 C2 O2 DC DC DC 1 1 1 N 2 12.93 1.20 119.70 132.63 A A A C3' O3' P DC DC DG 1 1 2 Y 2 4.48 0.70 119.90 124.38 A A A N3 C2 N2 DG DG DG 2 2 2 N 2 9.04 1.20 119.70 128.74 A A A C3' O3' P DG DG DG 2 2 3 Y 2 10.31 1.60 120.90 131.21 A A A P O5' C5' DG DG DG 3 3 3 N 2 -2.83 0.40 106.40 103.57 A A A C8 N9 C4 DG DG DG 3 3 3 N 2 4.68 0.70 119.90 124.58 A A A N3 C2 N2 DG DG DG 3 3 3 N 2 -4.08 0.60 128.60 124.52 A A A C5 C6 O6 DG DG DG 3 3 3 N 2 12.29 1.20 119.70 131.99 A A A C3' O3' P DG DG DA 3 3 4 Y 2 12.39 1.60 120.90 133.29 A A A P O5' C5' DA DA DA 4 4 4 N 2 20.06 1.20 119.70 139.76 A A A C3' O3' P DA DA DT 4 4 5 Y 2 14.97 1.60 120.90 135.87 A A A P O5' C5' DT DT DT 5 5 5 N 2 -5.65 0.70 108.00 102.35 A A A O4' C1' N1 DT DT DT 5 5 5 N 2 -4.41 0.60 122.30 117.89 A A A N3 C2 O2 DT DT DT 5 5 5 N 2 14.35 1.20 119.70 134.05 A A A C3' O3' P DT DT DC 5 5 6 Y 2 4.78 0.60 118.90 123.68 A A A N1 C2 O2 DC DC DC 6 6 6 N 2 -4.78 0.70 121.90 117.12 A A A N3 C2 O2 DC DC DC 6 6 6 N 2 13.14 1.20 119.70 132.84 A A A C3' O3' P DC DC DC 6 6 7 Y 2 10.36 1.60 120.90 131.26 A A A P O5' C5' DC DC DC 7 7 7 N 2 5.60 0.90 103.10 108.70 A A A C4' C3' C2' DC DC DC 7 7 7 N 2 4.01 0.60 118.90 122.91 A A A N1 C2 O2 DC DC DC 7 7 7 N 2 -5.18 0.70 121.90 116.72 A A A N3 C2 O2 DC DC DC 7 7 7 N 2 12.31 1.20 119.70 132.01 A A A C3' O3' P DC DC DG 7 7 8 Y 2 9.88 1.60 120.90 130.78 A A A P O5' C5' DG DG DG 8 8 8 N 2 4.35 0.70 119.90 124.25 A A A N3 C2 N2 DG DG DG 8 8 8 N 2 -2.64 0.40 120.30 117.66 B B B C6 N1 C2 DC DC DC 11 11 11 N 2 3.74 0.60 118.90 122.64 B B B N1 C2 O2 DC DC DC 11 11 11 N 2 -4.96 0.70 121.90 116.94 B B B N3 C2 O2 DC DC DC 11 11 11 N 2 9.67 1.20 119.70 129.37 B B B C3' O3' P DC DC DG 11 11 12 Y 2 13.59 1.60 120.90 134.49 B B B P O5' C5' DG DG DG 12 12 12 N 2 3.05 0.50 111.90 114.95 B B B C2 N3 C4 DG DG DG 12 12 12 N 2 21.02 1.20 119.70 140.72 B B B C3' O3' P DG DG DG 12 12 13 Y 2 15.26 1.60 120.90 136.16 B B B P O5' C5' DG DG DG 13 13 13 N 2 21.40 1.20 119.70 141.10 B B B C3' O3' P DG DG DA 13 13 14 Y 2 12.55 1.60 120.90 133.45 B B B P O5' C5' DA DA DA 14 14 14 N 2 12.99 1.20 119.70 132.69 B B B C3' O3' P DA DA DT 14 14 15 Y 2 8.28 1.20 119.70 127.98 B B B C3' O3' P DT DT DC 15 15 16 Y 2 3.68 0.60 118.90 122.58 B B B N1 C2 O2 DC DC DC 16 16 16 N 2 -4.78 0.70 121.90 117.12 B B B N3 C2 O2 DC DC DC 16 16 16 N 2 10.08 1.20 119.70 129.78 B B B C3' O3' P DC DC DC 16 16 17 Y 2 16.01 1.60 120.90 136.91 B B B P O5' C5' DC DC DC 17 17 17 N 2 4.57 0.60 118.90 123.47 B B B N1 C2 O2 DC DC DC 17 17 17 N 2 -4.45 0.70 121.90 117.45 B B B N3 C2 O2 DC DC DC 17 17 17 N 2 9.75 1.20 119.70 129.45 B B B C3' O3' P DC DC DG 17 17 18 Y 2 12.96 1.60 120.90 133.86 B B B P O5' C5' DG DG DG 18 18 18 N 2 4.84 0.70 119.90 124.74 B B B N3 C2 N2 DG DG DG 18 18 18 N 3 6.02 0.30 108.30 114.32 A A A O4' C1' N1 DC DC DC 1 1 1 N 3 4.46 0.60 118.90 123.36 A A A N1 C2 O2 DC DC DC 1 1 1 N 3 -4.46 0.70 121.90 117.44 A A A N3 C2 O2 DC DC DC 1 1 1 N 3 11.18 1.20 119.70 130.88 A A A C3' O3' P DC DC DG 1 1 2 Y 3 9.32 1.20 119.70 129.02 A A A C3' O3' P DG DG DG 2 2 3 Y 3 4.29 0.70 119.90 124.19 A A A N3 C2 N2 DG DG DG 3 3 3 N 3 24.19 1.20 119.70 143.89 A A A C3' O3' P DG DG DA 3 3 4 Y 3 20.27 1.20 119.70 139.97 A A A C3' O3' P DA DA DT 4 4 5 Y 3 -5.77 0.70 108.00 102.23 A A A O4' C1' N1 DT DT DT 5 5 5 N 3 -3.65 0.60 122.30 118.65 A A A N3 C2 O2 DT DT DT 5 5 5 N 3 11.89 1.20 119.70 131.59 A A A C3' O3' P DT DT DC 5 5 6 Y 3 4.43 0.60 118.90 123.33 A A A N1 C2 O2 DC DC DC 6 6 6 N 3 -4.66 0.70 121.90 117.24 A A A N3 C2 O2 DC DC DC 6 6 6 N 3 19.68 1.20 119.70 139.38 A A A C3' O3' P DC DC DC 6 6 7 Y 3 21.28 1.20 119.70 140.98 A A A C3' O3' P DC DC DG 7 7 8 Y 3 15.29 1.60 120.90 136.19 A A A P O5' C5' DG DG DG 8 8 8 N 3 5.70 0.70 119.90 125.60 A A A N3 C2 N2 DG DG DG 8 8 8 N 3 4.11 0.60 118.90 123.01 B B B N1 C2 O2 DC DC DC 11 11 11 N 3 10.41 1.20 119.70 130.11 B B B C3' O3' P DC DC DG 11 11 12 Y 3 14.02 1.60 120.90 134.92 B B B P O5' C5' DG DG DG 12 12 12 N 3 23.47 1.20 119.70 143.17 B B B C3' O3' P DG DG DG 12 12 13 Y 3 12.80 1.60 120.90 133.70 B B B P O5' C5' DG DG DG 13 13 13 N 3 12.23 1.20 119.70 131.93 B B B C3' O3' P DG DG DA 13 13 14 Y 3 20.88 1.60 120.90 141.78 B B B P O5' C5' DA DA DA 14 14 14 N 3 12.18 1.20 119.70 131.88 B B B C3' O3' P DA DA DT 14 14 15 Y 3 4.67 0.60 118.90 123.57 B B B N1 C2 O2 DC DC DC 16 16 16 N 3 -4.79 0.70 121.90 117.11 B B B N3 C2 O2 DC DC DC 16 16 16 N 3 9.41 1.20 119.70 129.11 B B B C3' O3' P DC DC DC 16 16 17 Y 3 14.18 1.60 120.90 135.08 B B B P O5' C5' DC DC DC 17 17 17 N 3 15.58 1.20 119.70 135.28 B B B C3' O3' P DC DC DG 17 17 18 Y 3 4.95 0.70 119.90 124.85 B B B N3 C2 N2 DG DG DG 18 18 18 N 3 -4.07 0.60 128.60 124.53 B B B C5 C6 O6 DG DG DG 18 18 18 N 4 -2.80 0.40 120.30 117.50 A A A C6 N1 C2 DC DC DC 1 1 1 N 4 4.47 0.60 118.90 123.37 A A A N1 C2 O2 DC DC DC 1 1 1 N 4 -4.88 0.70 121.90 117.02 A A A N3 C2 O2 DC DC DC 1 1 1 N 4 15.07 1.60 120.90 135.97 A A A P O5' C5' DG DG DG 2 2 2 N 4 2.51 0.30 108.30 110.81 A A A O4' C1' N9 DG DG DG 2 2 2 N 4 -2.43 0.40 106.40 103.97 A A A C8 N9 C4 DG DG DG 2 2 2 N 4 5.89 0.70 119.90 125.79 A A A N3 C2 N2 DG DG DG 2 2 2 N 4 10.84 1.20 119.70 130.54 A A A C3' O3' P DG DG DG 2 2 3 Y 4 3.04 0.30 108.30 111.34 A A A O4' C1' N9 DG DG DG 3 3 3 N 4 5.14 0.70 119.90 125.04 A A A N3 C2 N2 DG DG DG 3 3 3 N 4 14.44 1.60 120.90 135.34 A A A P O5' C5' DA DA DA 4 4 4 N 4 14.90 1.20 119.70 134.60 A A A C3' O3' P DA DA DT 4 4 5 Y 4 -4.18 0.60 122.30 118.12 A A A N3 C2 O2 DT DT DT 5 5 5 N 4 5.03 0.60 118.90 123.93 A A A N1 C2 O2 DC DC DC 6 6 6 N 4 -4.88 0.70 121.90 117.02 A A A N3 C2 O2 DC DC DC 6 6 6 N 4 32.77 1.20 119.70 152.47 A A A C3' O3' P DC DC DC 6 6 7 Y 4 -2.81 0.40 120.30 117.49 A A A C6 N1 C2 DC DC DC 7 7 7 N 4 4.59 0.60 118.90 123.49 A A A N1 C2 O2 DC DC DC 7 7 7 N 4 -4.90 0.70 121.90 117.00 A A A N3 C2 O2 DC DC DC 7 7 7 N 4 4.56 0.70 119.90 124.46 A A A N3 C2 N2 DG DG DG 8 8 8 N 4 4.38 0.60 118.90 123.28 B B B N1 C2 O2 DC DC DC 11 11 11 N 4 -4.64 0.70 121.90 117.26 B B B N3 C2 O2 DC DC DC 11 11 11 N 4 11.03 1.20 119.70 130.73 B B B C3' O3' P DC DC DG 11 11 12 Y 4 2.12 0.30 108.30 110.42 B B B O4' C1' N9 DG DG DG 12 12 12 N 4 4.62 0.70 119.90 124.52 B B B N3 C2 N2 DG DG DG 12 12 12 N 4 32.89 1.20 119.70 152.59 B B B C3' O3' P DG DG DG 12 12 13 Y 4 18.74 1.60 120.90 139.64 B B B P O5' C5' DG DG DG 13 13 13 N 4 3.29 0.30 108.30 111.59 B B B O4' C1' N9 DG DG DG 13 13 13 N 4 4.51 0.70 119.90 124.41 B B B N3 C2 N2 DG DG DG 13 13 13 N 4 15.31 1.60 120.90 136.21 B B B P O5' C5' DA DA DA 14 14 14 N 4 22.36 1.20 119.70 142.06 B B B C3' O3' P DA DA DT 14 14 15 Y 4 14.42 1.60 120.90 135.32 B B B P O5' C5' DC DC DC 16 16 16 N 4 -4.80 0.70 108.00 103.20 B B B O4' C1' N1 DC DC DC 16 16 16 N 4 -2.98 0.40 120.30 117.32 B B B C6 N1 C2 DC DC DC 16 16 16 N 4 4.59 0.60 118.90 123.49 B B B N1 C2 O2 DC DC DC 16 16 16 N 4 -4.66 0.70 121.90 117.24 B B B N3 C2 O2 DC DC DC 16 16 16 N 4 -8.68 1.20 119.70 111.02 B B B C3' O3' P DC DC DC 16 16 17 Y 4 19.40 1.60 120.90 140.30 B B B P O5' C5' DC DC DC 17 17 17 N 4 -2.63 0.40 120.30 117.67 B B B C6 N1 C2 DC DC DC 17 17 17 N 4 5.04 0.60 118.90 123.94 B B B N1 C2 O2 DC DC DC 17 17 17 N 4 -5.20 0.70 121.90 116.70 B B B N3 C2 O2 DC DC DC 17 17 17 N 4 14.28 1.60 120.90 135.18 B B B P O5' C5' DG DG DG 18 18 18 N 4 5.38 0.70 119.90 125.28 B B B N3 C2 N2 DG DG DG 18 18 18 N 1 A A C5' C4' DC DC 1 1 0.052 0.007 1.512 1.564 N 1 A A C5' C4' DG DG 2 2 0.046 0.007 1.512 1.558 N 1 A A N9 C4 DA DA 4 4 0.044 0.006 1.374 1.418 N 1 A A C5' C4' DC DC 6 6 0.045 0.007 1.512 1.557 N 1 A A C5' C4' DC DC 7 7 0.055 0.007 1.512 1.567 N 1 A A C5' C4' DG DG 8 8 0.049 0.007 1.512 1.561 N 1 B B C5' C4' DC DC 11 11 0.045 0.007 1.512 1.557 N 1 B B C5' C4' DG DG 13 13 0.063 0.007 1.512 1.575 N 1 B B N9 C4 DA DA 14 14 0.039 0.006 1.374 1.413 N 1 B B C5' C4' DC DC 16 16 0.053 0.007 1.512 1.565 N 1 B B C2' C1' DC DC 16 16 0.061 0.010 1.519 1.580 N 1 B B C5' C4' DC DC 17 17 0.043 0.007 1.512 1.555 N 2 A A C5' C4' DG DG 2 2 0.045 0.007 1.512 1.557 N 2 A A C5' C4' DG DG 3 3 0.046 0.007 1.512 1.558 N 2 A A N9 C4 DA DA 4 4 0.051 0.006 1.374 1.425 N 2 A A N1 C2 DT DT 5 5 0.051 0.008 1.376 1.427 N 2 A A C5' C4' DC DC 7 7 0.062 0.007 1.512 1.574 N 2 A A C3' C2' DC DC 7 7 0.074 0.012 1.518 1.592 N 2 B B C5' C4' DG DG 13 13 0.068 0.007 1.512 1.580 N 2 B B C3' C2' DT DT 15 15 0.085 0.012 1.518 1.603 N 2 B B C5' C4' DC DC 16 16 0.047 0.007 1.512 1.559 N 2 B B C5' C4' DC DC 17 17 0.052 0.007 1.512 1.564 N 2 B B C5' C4' DG DG 18 18 0.050 0.007 1.512 1.562 N 3 A A C5' C4' DG DG 2 2 0.043 0.007 1.512 1.555 N 3 A A C3' C2' DG DG 3 3 0.082 0.012 1.518 1.600 N 3 A A N9 C4 DG DG 3 3 0.050 0.008 1.375 1.425 N 3 A A C5' C4' DC DC 7 7 0.062 0.007 1.512 1.574 N 3 B B C5' C4' DG DG 12 12 0.045 0.007 1.512 1.557 N 3 B B C5' C4' DG DG 13 13 0.049 0.007 1.512 1.561 N 3 B B N9 C4 DA DA 14 14 0.039 0.006 1.374 1.413 N 3 B B C5' C4' DC DC 16 16 0.050 0.007 1.512 1.562 N 3 B B C5' C4' DG DG 18 18 0.042 0.007 1.512 1.554 N 4 A A N9 C4 DG DG 2 2 0.052 0.008 1.375 1.427 N 4 A A N1 C2 DT DT 5 5 0.056 0.008 1.376 1.432 N 4 A A N1 C6 DC DC 7 7 0.037 0.006 1.367 1.404 N 4 B B N9 C4 DA DA 14 14 0.042 0.006 1.374 1.416 N 4 B B N1 C6 DC DC 16 16 0.037 0.006 1.367 1.404 N 4 B B C5' C4' DG DG 18 18 0.047 0.007 1.512 1.559 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 ESPERAMICIN A1-DNA COMPLEX, NMR, 4 STRUCTURES 1 N N 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N covale 1.314 one A DPA 25 D C1 DPA 1_555 B DLF 24 F O3 DLF 1_555 covale 1.457 one B TMR 22 E O1 TMR 1_555 C DAG 1 C N4 DAG 1_555 covale 1.439 one B DLF 24 F O1 DLF 1_555 B MTC 26 G C9 MTC 1_555 covale 1.430 one B MTC 26 G C1 MTC 1_555 C DAG 1 C O1 DAG 1_555 covale 1.396 both C DAG 1 C O2 DAG 1_555 C MAT 2 C C1 MAT 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 18 B N1 DG 8 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 18 B O6 DG 8 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 18 B N2 DG 8 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 17 B N3 DC 7 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 17 B O2 DC 7 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 17 B N4 DC 7 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 16 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 16 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 16 B N4 DC 6 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 15 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 15 B O4 DT 5 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 5 1_555 B DA 14 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 5 1_555 B DA 14 B N6 DA 4 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 12 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 12 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 12 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 11 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 11 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 11 B N4 DC 1 1_555 DNA DEOXYRIBONUCLEIC ACID, DRUG COMPLEX, DNA 1PIK PDB 1 1PIK 1 8 1PIK 1 8 1PIK A 1 1 8 11 18 1PIK 11 18 1PIK B 1 1 8 1 P 1