HEADER MEMBRANE PROTEIN 02-JUN-03 1PJD TITLE STRUCTURE AND TOPOLOGY OF A PEPTIDE SEGMENT OF THE 6TH TRANSMEMBRANE TITLE 2 DOMAIN OF THE SACCHAROMYCES CEREVISIAE ALPHA-FACTOR RECEPTOR IN TITLE 3 PHOSPHOLIPID BILAYERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE ALPHA FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN A PORTION OF THE SOURCE 4 6TH TRANSMEMBRANE DOMAIN OF THE ALPHA FACTOR RECEPTOR OF SOURCE 5 SACCHAROMYCES CEREVISIAE. 15N SELECTIVELY LABELED FMOC-LEU, -ALA, - SOURCE 6 PHE, -VAL, -ILE WERE USED. KEYWDS ALPHA HELIX, MEMBRANE PROTEIN EXPDTA SOLID-STATE NMR AUTHOR K.G.VALENTINE,S.-F.LIU,F.M.MARASSI,G.VEGLIA,A.A.NEVZOROV,S.J.OPELLA, AUTHOR 2 F.-X.DING,S.-H.WANG,B.ARSHAVA,J.M.BECKER,F.NAIDER REVDAT 3 27-OCT-21 1PJD 1 REMARK SEQADV REVDAT 2 24-FEB-09 1PJD 1 VERSN REVDAT 1 16-SEP-03 1PJD 0 JRNL AUTH K.G.VALENTINE,S.-F.LIU,F.M.MARASSI,G.VEGLIA,S.J.OPELLA, JRNL AUTH 2 F.-X.DING,S.-H.WANG,B.ARSHAVA,J.M.BECKER,F.NAIDER JRNL TITL STRUCTURE AND TOPOLOGY OF A PEPTIDE SEGMENT OF THE 6TH JRNL TITL 2 TRANSMEMBRANE DOMAIN OF THE SACCHAROMYCES CEREVISIAE JRNL TITL 3 ALPHA-FACTOR RECEPTOR IN PHOSPHOLIPID BILAYERS JRNL REF BIOPOLYMERS V. 59 243 2001 JRNL REFN ISSN 0006-3525 JRNL PMID 11473349 JRNL DOI 10.1002/1097-0282(20011005)59:4<243::AID-BIP1021>3.0.CO;2-H REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 97, SRUCTURAL FITTING 1.0 REMARK 3 AUTHORS : ACCELRYS (FELIX), NEVZOROV, OPELLA (SRUCTURAL REMARK 3 FITTING) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS STRUCTURE WAS CALCULATED BY USING REMARK 3 A STRUCTURAL FITTING ALGORITHM THAT FINDS TORSION ANGLES BETWEEN REMARK 3 CONSECUTIVE RESIDUES BASED ON THEIR NMR FREQUENCIES. REMARK 4 REMARK 4 1PJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019358. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ALIGNED SAMPLE ON GLASS PLATES REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : PISEMA REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : MAGNEX REMARK 210 SPECTROMETER MANUFACTURER : HOME-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SRUCTURAL FITTING 1.0 REMARK 210 METHOD USED : DIRECT STRUCTURAL FITTING OF 2D REMARK 210 SOLID-STATE NMR SPECTRA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: PISEMA: POLARIZATION INVERSION SPIN EXCHANGE AT THE MAGIC REMARK 210 ANGLE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID- REMARK 215 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 215 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 215 ON THESE RECORDS ARE MEANINGLESS. REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 LYS A 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 13 H SER A 16 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 6 -31.46 -35.12 REMARK 500 ILE A 9 -31.11 -35.21 REMARK 500 ALA A 14 -18.93 -45.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 1PJD A 1 18 UNP P06842 STE2_YEAST 252 269 SEQADV 1PJD ALA A 1 UNP P06842 CYS 252 ENGINEERED MUTATION SEQRES 1 A 18 ALA GLN SER LEU LEU VAL PRO SER ILE ILE PHE ILE LEU SEQRES 2 A 18 ALA TYR SER LEU LYS HELIX 1 1 LEU A 4 ALA A 14 1 11 HELIX 2 2 TYR A 15 LEU A 17 5 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ATOM 1 CA SER A 3 -0.072 2.021 -11.518 1.00 0.00 C ATOM 2 C SER A 3 -0.967 1.292 -10.529 1.00 0.00 C ATOM 3 O SER A 3 -1.677 1.915 -9.743 1.00 0.00 O ATOM 4 N LEU A 4 -0.920 -0.036 -10.582 1.00 0.00 N ATOM 5 CA LEU A 4 -1.719 -0.880 -9.699 1.00 0.00 C ATOM 6 C LEU A 4 -0.913 -1.284 -8.475 1.00 0.00 C ATOM 7 O LEU A 4 -1.396 -1.206 -7.348 1.00 0.00 O ATOM 8 H LEU A 4 -0.314 -0.487 -11.253 1.00 0.00 H ATOM 9 N LEU A 5 0.321 -1.716 -8.717 1.00 0.00 N ATOM 10 CA LEU A 5 1.222 -2.141 -7.649 1.00 0.00 C ATOM 11 C LEU A 5 1.590 -0.962 -6.763 1.00 0.00 C ATOM 12 O LEU A 5 1.184 -0.893 -5.605 1.00 0.00 O ATOM 13 H LEU A 5 0.657 -1.756 -9.669 1.00 0.00 H ATOM 14 N VAL A 6 2.364 -0.039 -7.326 1.00 0.00 N ATOM 15 CA VAL A 6 2.806 1.153 -6.607 1.00 0.00 C ATOM 16 C VAL A 6 1.721 1.633 -5.656 1.00 0.00 C ATOM 17 O VAL A 6 2.009 2.192 -4.601 1.00 0.00 O ATOM 18 H VAL A 6 2.662 -0.157 -8.284 1.00 0.00 H ATOM 19 N PRO A 7 0.471 1.405 -6.048 1.00 0.00 N ATOM 20 CA PRO A 7 -0.683 1.805 -5.248 1.00 0.00 C ATOM 21 C PRO A 7 -0.946 0.789 -4.149 1.00 0.00 C ATOM 22 O PRO A 7 -1.213 1.151 -3.006 1.00 0.00 O ATOM 23 N SER A 8 -0.868 -0.488 -4.515 1.00 0.00 N ATOM 24 CA SER A 8 -1.094 -1.584 -3.578 1.00 0.00 C ATOM 25 C SER A 8 -0.175 -1.453 -2.374 1.00 0.00 C ATOM 26 O SER A 8 -0.633 -1.291 -1.245 1.00 0.00 O ATOM 27 H SER A 8 -0.645 -0.719 -5.473 1.00 0.00 H ATOM 28 N ILE A 9 1.127 -1.525 -2.636 1.00 0.00 N ATOM 29 CA ILE A 9 2.140 -1.418 -1.590 1.00 0.00 C ATOM 30 C ILE A 9 1.696 -0.437 -0.517 1.00 0.00 C ATOM 31 O ILE A 9 2.040 -0.584 0.653 1.00 0.00 O ATOM 32 H ILE A 9 1.436 -1.657 -3.588 1.00 0.00 H ATOM 33 N ILE A 10 0.927 0.564 -0.936 1.00 0.00 N ATOM 34 CA ILE A 10 0.418 1.589 -0.030 1.00 0.00 C ATOM 35 C ILE A 10 -0.576 0.987 0.950 1.00 0.00 C ATOM 36 O ILE A 10 -0.356 0.998 2.159 1.00 0.00 O ATOM 37 H ILE A 10 0.679 0.626 -1.913 1.00 0.00 H ATOM 38 N PHE A 11 -1.671 0.462 0.408 1.00 0.00 N ATOM 39 CA PHE A 11 -2.721 -0.154 1.213 1.00 0.00 C ATOM 40 C PHE A 11 -2.116 -0.955 2.355 1.00 0.00 C ATOM 41 O PHE A 11 -2.432 -0.729 3.521 1.00 0.00 O ATOM 42 H PHE A 11 -1.791 0.485 -0.595 1.00 0.00 H ATOM 43 N ILE A 12 -1.242 -1.893 1.998 1.00 0.00 N ATOM 44 CA ILE A 12 -0.573 -2.747 2.975 1.00 0.00 C ATOM 45 C ILE A 12 0.142 -1.904 4.019 1.00 0.00 C ATOM 46 O ILE A 12 0.240 -2.289 5.182 1.00 0.00 O ATOM 47 H ILE A 12 -1.026 -2.027 1.020 1.00 0.00 H ATOM 48 N LEU A 13 0.638 -0.749 3.583 1.00 0.00 N ATOM 49 CA LEU A 13 1.352 0.174 4.460 1.00 0.00 C ATOM 50 C LEU A 13 0.470 0.589 5.627 1.00 0.00 C ATOM 51 O LEU A 13 0.956 0.844 6.726 1.00 0.00 O ATOM 52 H LEU A 13 0.522 -0.492 2.613 1.00 0.00 H ATOM 53 N ALA A 14 -0.833 0.651 5.369 1.00 0.00 N ATOM 54 CA ALA A 14 -1.812 1.034 6.382 1.00 0.00 C ATOM 55 C ALA A 14 -1.537 0.307 7.689 1.00 0.00 C ATOM 56 O ALA A 14 -2.002 0.719 8.750 1.00 0.00 O ATOM 57 H ALA A 14 -1.168 0.428 4.442 1.00 0.00 H ATOM 58 N TYR A 15 -0.776 -0.779 7.593 1.00 0.00 N ATOM 59 CA TYR A 15 -0.421 -1.588 8.756 1.00 0.00 C ATOM 60 C TYR A 15 0.454 -0.792 9.710 1.00 0.00 C ATOM 61 O TYR A 15 0.618 -1.161 10.871 1.00 0.00 O ATOM 62 H TYR A 15 -0.427 -1.064 6.689 1.00 0.00 H ATOM 63 N SER A 16 1.011 0.304 9.201 1.00 0.00 N ATOM 64 CA SER A 16 1.878 1.176 9.988 1.00 0.00 C ATOM 65 C SER A 16 1.059 1.989 10.977 1.00 0.00 C ATOM 66 O SER A 16 1.485 2.226 12.105 1.00 0.00 O ATOM 67 H SER A 16 0.833 0.551 8.238 1.00 0.00 H ATOM 68 N LEU A 17 -0.123 2.410 10.535 1.00 0.00 N ATOM 69 CA LEU A 17 -1.028 3.202 11.363 1.00 0.00 C ATOM 70 H LEU A 17 -0.415 2.179 9.596 1.00 0.00 H TER 71 LEU A 17 MASTER 113 0 0 2 0 0 0 6 57 1 0 2 END