1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Park, S.H. Mrse, A.A. Nevzorov, A.A. Mesleh, M.F. Oblatt-Montal, M. Montal, M. Opella, S.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 333 409 424 10.1016/j.jmb.2003.08.048 14529626 Three-dimensional structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1 2003 10.2210/pdb1pje/pdb pdb_00001pje 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 3873.885 VPU protein Trans-membrane domain Y29G 1 man polymer U ORF protein no no MQPIQIAIVALVVAIIIAIVVWSIVIIEGRGGKKKK MQPIQIAIVALVVAIIIAIVVWSIVIIEGRGGKKKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample VPU 11676 Human immunodeficiency virus 1 562 Escherichia coli BLR(DE3)pLysS plasmid pET-31b(+) database_2 pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-10-14 1 1 2008-04-29 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1-NMR, 4 STRUCTURES RCSB Y RCSB 2003-06-02 REL PISEMA: Polarization Inversion Spin Exchange at the Magic Angle minimized average structure 100 1 PISEMA 7.0 ambient 293 K This structure was calculated by using a structural fitting algorithm that finds torsion angles between consecutive residues based on their NMR frequencies Direct structural fitting of 2D solid-state NMR data 1 minimized average structure Completely aligned sample in glass plates: 3.5 mg Vpu2-30+ U-15N, 75 mg lipid mixture (DOPC:DOPG, 9:1) Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax processing NMRPipe 2.1 Nevzorov, Opella structure solution Structural Fitting 1.0 Nevzorov, Opella refinement Structural Fitting 1.0 700 Bruker AVANCE n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A ALA 7 n 7 ALA 7 A ILE 8 n 8 ILE 8 A VAL 9 n 9 VAL 9 A ALA 10 n 10 ALA 10 A LEU 11 n 11 LEU 11 A VAL 12 n 12 VAL 12 A VAL 13 n 13 VAL 13 A ALA 14 n 14 ALA 14 A ILE 15 n 15 ILE 15 A ILE 16 n 16 ILE 16 A ILE 17 n 17 ILE 17 A ALA 18 n 18 ALA 18 A ILE 19 n 19 ILE 19 A VAL 20 n 20 VAL 20 A VAL 21 n 21 VAL 21 A TRP 22 n 22 TRP 22 A SER 23 n 23 SER 23 A ILE 24 n 24 ILE 24 A VAL 25 n 25 VAL 25 A n 26 26 A n 27 27 A n 28 28 A n 29 29 A n 30 30 A n 31 31 A n 32 32 A n 33 33 A n 34 34 A n 35 35 A n 36 36 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A N ALA 7 A N ALA 7 1 Y 1 A CB ALA 7 A CB ALA 7 1 Y 1 A CB ILE 8 A CB ILE 8 1 Y 1 A CG1 ILE 8 A CG1 ILE 8 1 Y 1 A CG2 ILE 8 A CG2 ILE 8 1 Y 1 A CD1 ILE 8 A CD1 ILE 8 1 Y 1 A CB VAL 9 A CB VAL 9 1 Y 1 A CG1 VAL 9 A CG1 VAL 9 1 Y 1 A CG2 VAL 9 A CG2 VAL 9 1 Y 1 A CB ALA 10 A CB ALA 10 1 Y 1 A CB LEU 11 A CB LEU 11 1 Y 1 A CG LEU 11 A CG LEU 11 1 Y 1 A CD1 LEU 11 A CD1 LEU 11 1 Y 1 A CD2 LEU 11 A CD2 LEU 11 1 Y 1 A CB VAL 12 A CB VAL 12 1 Y 1 A CG1 VAL 12 A CG1 VAL 12 1 Y 1 A CG2 VAL 12 A CG2 VAL 12 1 Y 1 A CB VAL 13 A CB VAL 13 1 Y 1 A CG1 VAL 13 A CG1 VAL 13 1 Y 1 A CG2 VAL 13 A CG2 VAL 13 1 Y 1 A CB ALA 14 A CB ALA 14 1 Y 1 A CB ILE 15 A CB ILE 15 1 Y 1 A CG1 ILE 15 A CG1 ILE 15 1 Y 1 A CG2 ILE 15 A CG2 ILE 15 1 Y 1 A CD1 ILE 15 A CD1 ILE 15 1 Y 1 A CB ILE 16 A CB ILE 16 1 Y 1 A CG1 ILE 16 A CG1 ILE 16 1 Y 1 A CG2 ILE 16 A CG2 ILE 16 1 Y 1 A CD1 ILE 16 A CD1 ILE 16 1 Y 1 A CB ILE 17 A CB ILE 17 1 Y 1 A CG1 ILE 17 A CG1 ILE 17 1 Y 1 A CG2 ILE 17 A CG2 ILE 17 1 Y 1 A CD1 ILE 17 A CD1 ILE 17 1 Y 1 A CB ALA 18 A CB ALA 18 1 Y 1 A CB ILE 19 A CB ILE 19 1 Y 1 A CG1 ILE 19 A CG1 ILE 19 1 Y 1 A CG2 ILE 19 A CG2 ILE 19 1 Y 1 A CD1 ILE 19 A CD1 ILE 19 1 Y 1 A CB VAL 20 A CB VAL 20 1 Y 1 A CG1 VAL 20 A CG1 VAL 20 1 Y 1 A CG2 VAL 20 A CG2 VAL 20 1 Y 1 A CB VAL 21 A CB VAL 21 1 Y 1 A CG1 VAL 21 A CG1 VAL 21 1 Y 1 A CG2 VAL 21 A CG2 VAL 21 1 Y 1 A CB TRP 22 A CB TRP 22 1 Y 1 A CG TRP 22 A CG TRP 22 1 Y 1 A CD1 TRP 22 A CD1 TRP 22 1 Y 1 A CD2 TRP 22 A CD2 TRP 22 1 Y 1 A NE1 TRP 22 A NE1 TRP 22 1 Y 1 A CE2 TRP 22 A CE2 TRP 22 1 Y 1 A CE3 TRP 22 A CE3 TRP 22 1 Y 1 A CZ2 TRP 22 A CZ2 TRP 22 1 Y 1 A CZ3 TRP 22 A CZ3 TRP 22 1 Y 1 A CH2 TRP 22 A CH2 TRP 22 1 Y 1 A CB SER 23 A CB SER 23 1 Y 1 A OG SER 23 A OG SER 23 1 Y 1 A CB ILE 24 A CB ILE 24 1 Y 1 A CG1 ILE 24 A CG1 ILE 24 1 Y 1 A CG2 ILE 24 A CG2 ILE 24 1 Y 1 A CD1 ILE 24 A CD1 ILE 24 1 Y 1 A C VAL 25 A C VAL 25 1 Y 1 A O VAL 25 A O VAL 25 1 Y 1 A CB VAL 25 A CB VAL 25 1 Y 1 A CG1 VAL 25 A CG1 VAL 25 1 Y 1 A CG2 VAL 25 A CG2 VAL 25 1 Y 1 A MET 1 A MET 1 1 Y 1 A GLN 2 A GLN 2 1 Y 1 A PRO 3 A PRO 3 1 Y 1 A ILE 4 A ILE 4 1 Y 1 A GLN 5 A GLN 5 1 Y 1 A ILE 6 A ILE 6 1 Y 1 A ILE 26 A ILE 26 1 Y 1 A ILE 27 A ILE 27 1 Y 1 A GLU 28 A GLU 28 1 Y 1 A GLY 29 A GLY 29 1 Y 1 A ARG 30 A ARG 30 1 Y 1 A GLY 31 A GLY 31 1 Y 1 A GLY 32 A GLY 32 1 Y 1 A LYS 33 A LYS 33 1 Y 1 A LYS 34 A LYS 34 1 Y 1 A LYS 35 A LYS 35 1 Y 1 A LYS 36 A LYS 36 1 Y 1 A A O H LEU ILE 11 15 1.38 1 A A O H ALA TRP 18 22 1.46 Structure of the channel-forming trans-membrane domain of Virus protein "u"(Vpu) from HIV-1 1 N N A ILE 8 A ILE 8 HELX_P A VAL 25 A VAL 25 1 1 18 VIRAL PROTEIN ALPHA-HELIX, Viral protein VPU_HV1LW UNP 1 1 Q70625 MQPIQIAIVALVVAIIIAIVVWSIVIIEYR 1 30 1PJE 1 30 Q70625 A 1 1 30 1 TYR engineered mutation GLY 29 1PJE A Q70625 UNP 29 29 1 cloning artifact GLY 31 1PJE A Q70625 UNP 31 1 cloning artifact GLY 32 1PJE A Q70625 UNP 32 1 cloning artifact LYS 33 1PJE A Q70625 UNP 33 1 cloning artifact LYS 34 1PJE A Q70625 UNP 34 1 cloning artifact LYS 35 1PJE A Q70625 UNP 35 1 cloning artifact LYS 36 1PJE A Q70625 UNP 36