1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Park, S.H.
Mrse, A.A.
Nevzorov, A.A.
Mesleh, M.F.
Oblatt-Montal, M.
Montal, M.
Opella, S.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
333
409
424
10.1016/j.jmb.2003.08.048
14529626
Three-dimensional structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1
2003
10.2210/pdb1pje/pdb
pdb_00001pje
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3873.885
VPU protein
Trans-membrane domain
Y29G
1
man
polymer
U ORF protein
no
no
MQPIQIAIVALVVAIIIAIVVWSIVIIEGRGGKKKK
MQPIQIAIVALVVAIIIAIVVWSIVIIEGRGGKKKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
sample
VPU
11676
Human immunodeficiency virus 1
562
Escherichia coli
BLR(DE3)pLysS
plasmid
pET-31b(+)
database_2
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-10-14
1
1
2008-04-29
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1-NMR, 4 STRUCTURES
RCSB
Y
RCSB
2003-06-02
REL
PISEMA: Polarization Inversion Spin Exchange at the Magic Angle
minimized average structure
100
1
PISEMA
7.0
ambient
293
K
This structure was calculated by using a structural fitting algorithm that finds torsion angles between consecutive residues based on their NMR frequencies
Direct structural fitting of 2D solid-state NMR data
1
minimized average structure
Completely aligned sample in glass plates: 3.5 mg Vpu2-30+ U-15N, 75 mg lipid mixture (DOPC:DOPG, 9:1)
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax
processing
NMRPipe
2.1
Nevzorov, Opella
structure solution
Structural Fitting
1.0
Nevzorov, Opella
refinement
Structural Fitting
1.0
700
Bruker
AVANCE
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
ALA
7
n
7
ALA
7
A
ILE
8
n
8
ILE
8
A
VAL
9
n
9
VAL
9
A
ALA
10
n
10
ALA
10
A
LEU
11
n
11
LEU
11
A
VAL
12
n
12
VAL
12
A
VAL
13
n
13
VAL
13
A
ALA
14
n
14
ALA
14
A
ILE
15
n
15
ILE
15
A
ILE
16
n
16
ILE
16
A
ILE
17
n
17
ILE
17
A
ALA
18
n
18
ALA
18
A
ILE
19
n
19
ILE
19
A
VAL
20
n
20
VAL
20
A
VAL
21
n
21
VAL
21
A
TRP
22
n
22
TRP
22
A
SER
23
n
23
SER
23
A
ILE
24
n
24
ILE
24
A
VAL
25
n
25
VAL
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
N
ALA
7
A
N
ALA
7
1
Y
1
A
CB
ALA
7
A
CB
ALA
7
1
Y
1
A
CB
ILE
8
A
CB
ILE
8
1
Y
1
A
CG1
ILE
8
A
CG1
ILE
8
1
Y
1
A
CG2
ILE
8
A
CG2
ILE
8
1
Y
1
A
CD1
ILE
8
A
CD1
ILE
8
1
Y
1
A
CB
VAL
9
A
CB
VAL
9
1
Y
1
A
CG1
VAL
9
A
CG1
VAL
9
1
Y
1
A
CG2
VAL
9
A
CG2
VAL
9
1
Y
1
A
CB
ALA
10
A
CB
ALA
10
1
Y
1
A
CB
LEU
11
A
CB
LEU
11
1
Y
1
A
CG
LEU
11
A
CG
LEU
11
1
Y
1
A
CD1
LEU
11
A
CD1
LEU
11
1
Y
1
A
CD2
LEU
11
A
CD2
LEU
11
1
Y
1
A
CB
VAL
12
A
CB
VAL
12
1
Y
1
A
CG1
VAL
12
A
CG1
VAL
12
1
Y
1
A
CG2
VAL
12
A
CG2
VAL
12
1
Y
1
A
CB
VAL
13
A
CB
VAL
13
1
Y
1
A
CG1
VAL
13
A
CG1
VAL
13
1
Y
1
A
CG2
VAL
13
A
CG2
VAL
13
1
Y
1
A
CB
ALA
14
A
CB
ALA
14
1
Y
1
A
CB
ILE
15
A
CB
ILE
15
1
Y
1
A
CG1
ILE
15
A
CG1
ILE
15
1
Y
1
A
CG2
ILE
15
A
CG2
ILE
15
1
Y
1
A
CD1
ILE
15
A
CD1
ILE
15
1
Y
1
A
CB
ILE
16
A
CB
ILE
16
1
Y
1
A
CG1
ILE
16
A
CG1
ILE
16
1
Y
1
A
CG2
ILE
16
A
CG2
ILE
16
1
Y
1
A
CD1
ILE
16
A
CD1
ILE
16
1
Y
1
A
CB
ILE
17
A
CB
ILE
17
1
Y
1
A
CG1
ILE
17
A
CG1
ILE
17
1
Y
1
A
CG2
ILE
17
A
CG2
ILE
17
1
Y
1
A
CD1
ILE
17
A
CD1
ILE
17
1
Y
1
A
CB
ALA
18
A
CB
ALA
18
1
Y
1
A
CB
ILE
19
A
CB
ILE
19
1
Y
1
A
CG1
ILE
19
A
CG1
ILE
19
1
Y
1
A
CG2
ILE
19
A
CG2
ILE
19
1
Y
1
A
CD1
ILE
19
A
CD1
ILE
19
1
Y
1
A
CB
VAL
20
A
CB
VAL
20
1
Y
1
A
CG1
VAL
20
A
CG1
VAL
20
1
Y
1
A
CG2
VAL
20
A
CG2
VAL
20
1
Y
1
A
CB
VAL
21
A
CB
VAL
21
1
Y
1
A
CG1
VAL
21
A
CG1
VAL
21
1
Y
1
A
CG2
VAL
21
A
CG2
VAL
21
1
Y
1
A
CB
TRP
22
A
CB
TRP
22
1
Y
1
A
CG
TRP
22
A
CG
TRP
22
1
Y
1
A
CD1
TRP
22
A
CD1
TRP
22
1
Y
1
A
CD2
TRP
22
A
CD2
TRP
22
1
Y
1
A
NE1
TRP
22
A
NE1
TRP
22
1
Y
1
A
CE2
TRP
22
A
CE2
TRP
22
1
Y
1
A
CE3
TRP
22
A
CE3
TRP
22
1
Y
1
A
CZ2
TRP
22
A
CZ2
TRP
22
1
Y
1
A
CZ3
TRP
22
A
CZ3
TRP
22
1
Y
1
A
CH2
TRP
22
A
CH2
TRP
22
1
Y
1
A
CB
SER
23
A
CB
SER
23
1
Y
1
A
OG
SER
23
A
OG
SER
23
1
Y
1
A
CB
ILE
24
A
CB
ILE
24
1
Y
1
A
CG1
ILE
24
A
CG1
ILE
24
1
Y
1
A
CG2
ILE
24
A
CG2
ILE
24
1
Y
1
A
CD1
ILE
24
A
CD1
ILE
24
1
Y
1
A
C
VAL
25
A
C
VAL
25
1
Y
1
A
O
VAL
25
A
O
VAL
25
1
Y
1
A
CB
VAL
25
A
CB
VAL
25
1
Y
1
A
CG1
VAL
25
A
CG1
VAL
25
1
Y
1
A
CG2
VAL
25
A
CG2
VAL
25
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
GLN
2
A
GLN
2
1
Y
1
A
PRO
3
A
PRO
3
1
Y
1
A
ILE
4
A
ILE
4
1
Y
1
A
GLN
5
A
GLN
5
1
Y
1
A
ILE
6
A
ILE
6
1
Y
1
A
ILE
26
A
ILE
26
1
Y
1
A
ILE
27
A
ILE
27
1
Y
1
A
GLU
28
A
GLU
28
1
Y
1
A
GLY
29
A
GLY
29
1
Y
1
A
ARG
30
A
ARG
30
1
Y
1
A
GLY
31
A
GLY
31
1
Y
1
A
GLY
32
A
GLY
32
1
Y
1
A
LYS
33
A
LYS
33
1
Y
1
A
LYS
34
A
LYS
34
1
Y
1
A
LYS
35
A
LYS
35
1
Y
1
A
LYS
36
A
LYS
36
1
Y
1
A
A
O
H
LEU
ILE
11
15
1.38
1
A
A
O
H
ALA
TRP
18
22
1.46
Structure of the channel-forming trans-membrane domain of Virus protein "u"(Vpu) from HIV-1
1
N
N
A
ILE
8
A
ILE
8
HELX_P
A
VAL
25
A
VAL
25
1
1
18
VIRAL PROTEIN
ALPHA-HELIX, Viral protein
VPU_HV1LW
UNP
1
1
Q70625
MQPIQIAIVALVVAIIIAIVVWSIVIIEYR
1
30
1PJE
1
30
Q70625
A
1
1
30
1
TYR
engineered mutation
GLY
29
1PJE
A
Q70625
UNP
29
29
1
cloning artifact
GLY
31
1PJE
A
Q70625
UNP
31
1
cloning artifact
GLY
32
1PJE
A
Q70625
UNP
32
1
cloning artifact
LYS
33
1PJE
A
Q70625
UNP
33
1
cloning artifact
LYS
34
1PJE
A
Q70625
UNP
34
1
cloning artifact
LYS
35
1PJE
A
Q70625
UNP
35
1
cloning artifact
LYS
36
1PJE
A
Q70625
UNP
36