0.00
-5.958
11.763
1.211
A
CA
ALA
7
ATOM
A
CA
ALA
1
7
1.00
1
C
0.00
-5.441
10.748
0.206
A
C
ALA
7
ATOM
A
C
ALA
1
7
1.00
1
C
0.00
-5.994
9.660
0.066
A
O
ALA
7
ATOM
A
O
ALA
1
7
1.00
1
O
0.00
-4.372
11.123
-0.491
A
N
ILE
8
ATOM
A
N
ILE
1
8
1.00
1
N
0.00
-3.757
10.268
-1.489
A
CA
ILE
8
ATOM
A
CA
ILE
1
8
1.00
1
C
0.00
-2.467
9.669
-0.955
A
C
ILE
8
ATOM
A
C
ILE
1
8
1.00
1
C
0.00
-2.131
8.525
-1.255
A
O
ILE
8
ATOM
A
O
ILE
1
8
1.00
1
O
0.00
-3.964
12.033
-0.328
A
H
ILE
8
ATOM
A
H
ILE
1
8
1.00
1
H
0.00
-1.752
10.460
-0.159
A
N
VAL
9
ATOM
A
N
VAL
1
9
1.00
1
N
0.00
-0.498
10.035
0.430
A
CA
VAL
9
ATOM
A
CA
VAL
1
9
1.00
1
C
0.00
-0.724
8.873
1.384
A
C
VAL
9
ATOM
A
C
VAL
1
9
1.00
1
C
0.00
-0.025
7.864
1.326
A
O
VAL
9
ATOM
A
O
VAL
1
9
1.00
1
O
0.00
-2.085
11.390
0.048
A
H
VAL
9
ATOM
A
H
VAL
1
9
1.00
1
H
0.00
-1.711
9.034
2.261
A
N
ALA
10
ATOM
A
N
ALA
1
10
1.00
1
N
0.00
-2.053
8.018
3.237
A
CA
ALA
10
ATOM
A
CA
ALA
1
10
1.00
1
C
0.00
-2.464
6.729
2.544
A
C
ALA
10
ATOM
A
C
ALA
1
10
1.00
1
C
0.00
-1.880
5.673
2.777
A
O
ALA
10
ATOM
A
O
ALA
1
10
1.00
1
O
0.00
-2.247
9.890
2.256
A
H
ALA
10
ATOM
A
H
ALA
1
10
1.00
1
H
0.00
-3.477
6.835
1.690
A
N
LEU
11
ATOM
A
N
LEU
1
11
1.00
1
N
0.00
-3.988
5.698
0.950
A
CA
LEU
11
ATOM
A
CA
LEU
1
11
1.00
1
C
0.00
-2.886
5.069
0.114
A
C
LEU
11
ATOM
A
C
LEU
1
11
1.00
1
C
0.00
-2.593
3.883
0.247
A
O
LEU
11
ATOM
A
O
LEU
1
11
1.00
1
O
0.00
-3.914
7.734
1.545
A
H
LEU
11
ATOM
A
H
LEU
1
11
1.00
1
H
0.00
-2.282
5.882
-0.748
A
N
VAL
12
ATOM
A
N
VAL
1
12
1.00
1
N
0.00
-1.211
5.434
-1.617
A
CA
VAL
12
ATOM
A
CA
VAL
1
12
1.00
1
C
0.00
-0.135
4.724
-0.812
A
C
VAL
12
ATOM
A
C
VAL
1
12
1.00
1
C
0.00
0.273
3.614
-1.145
A
O
VAL
12
ATOM
A
O
VAL
1
12
1.00
1
O
0.00
-2.572
6.848
-0.808
A
H
VAL
12
ATOM
A
H
VAL
1
12
1.00
1
H
0.00
0.316
5.384
0.251
A
N
VAL
13
ATOM
A
N
VAL
1
13
1.00
1
N
0.00
1.343
4.843
1.120
A
CA
VAL
13
ATOM
A
CA
VAL
1
13
1.00
1
C
0.00
0.884
3.530
1.733
A
C
VAL
13
ATOM
A
C
VAL
1
13
1.00
1
C
0.00
1.539
2.501
1.585
A
O
VAL
13
ATOM
A
O
VAL
1
13
1.00
1
O
0.00
-0.062
6.294
0.470
A
H
VAL
13
ATOM
A
H
VAL
1
13
1.00
1
H
0.00
-0.253
3.583
2.423
A
N
ALA
14
ATOM
A
N
ALA
1
14
1.00
1
N
0.00
-0.823
2.417
3.068
A
CA
ALA
14
ATOM
A
CA
ALA
1
14
1.00
1
C
0.00
-1.284
1.406
2.029
A
C
ALA
14
ATOM
A
C
ALA
1
14
1.00
1
C
0.00
-0.889
0.243
2.062
A
O
ALA
14
ATOM
A
O
ALA
1
14
1.00
1
O
0.00
-0.743
4.462
2.507
A
H
ALA
14
ATOM
A
H
ALA
1
14
1.00
1
H
0.00
-2.123
1.870
1.108
A
N
ILE
15
ATOM
A
N
ILE
1
15
1.00
1
N
0.00
-2.653
1.033
0.050
A
CA
ILE
15
ATOM
A
CA
ILE
1
15
1.00
1
C
0.00
-1.525
0.346
-0.700
A
C
ILE
15
ATOM
A
C
ILE
1
15
1.00
1
C
0.00
-1.612
-0.836
-1.025
A
O
ILE
15
ATOM
A
O
ILE
1
15
1.00
1
O
0.00
-2.408
2.839
1.138
A
H
ILE
15
ATOM
A
H
ILE
1
15
1.00
1
H
0.00
-0.466
1.105
-0.968
A
N
ILE
16
ATOM
A
N
ILE
1
16
1.00
1
N
0.00
0.693
0.597
-1.677
A
CA
ILE
16
ATOM
A
CA
ILE
1
16
1.00
1
C
0.00
1.417
-0.441
-0.837
A
C
ILE
16
ATOM
A
C
ILE
1
16
1.00
1
C
0.00
1.607
-1.578
-1.266
A
O
ILE
16
ATOM
A
O
ILE
1
16
1.00
1
O
0.00
-0.457
2.071
-0.671
A
H
ILE
16
ATOM
A
H
ILE
1
16
1.00
1
H
0.00
1.817
-0.033
0.364
A
N
ILE
17
ATOM
A
N
ILE
1
17
1.00
1
N
0.00
2.521
-0.904
1.284
A
CA
ILE
17
ATOM
A
CA
ILE
1
17
1.00
1
C
0.00
1.796
-2.233
1.419
A
C
ILE
17
ATOM
A
C
ILE
1
17
1.00
1
C
0.00
2.420
-3.292
1.443
A
O
ILE
17
ATOM
A
O
ILE
1
17
1.00
1
O
0.00
1.628
0.915
0.656
A
H
ILE
17
ATOM
A
H
ILE
1
17
1.00
1
H
0.00
0.472
-2.159
1.506
A
N
ALA
18
ATOM
A
N
ALA
1
18
1.00
1
N
0.00
-0.364
-3.337
1.640
A
CA
ALA
18
ATOM
A
CA
ALA
1
18
1.00
1
C
0.00
-0.307
-4.176
0.373
A
C
ALA
18
ATOM
A
C
ALA
1
18
1.00
1
C
0.00
0.007
-5.363
0.417
A
O
ALA
18
ATOM
A
O
ALA
1
18
1.00
1
O
0.00
0.021
-1.255
1.481
A
H
ALA
18
ATOM
A
H
ALA
1
18
1.00
1
H
0.00
-0.615
-3.538
-0.752
A
N
ILE
19
ATOM
A
N
ILE
1
19
1.00
1
N
0.00
-0.608
-4.198
-2.044
A
CA
ILE
19
ATOM
A
CA
ILE
1
19
1.00
1
C
0.00
0.746
-4.838
-2.307
A
C
ILE
19
ATOM
A
C
ILE
1
19
1.00
1
C
0.00
0.830
-6.008
-2.675
A
O
ILE
19
ATOM
A
O
ILE
1
19
1.00
1
O
0.00
-0.864
-2.560
-0.718
A
H
ILE
19
ATOM
A
H
ILE
1
19
1.00
1
H
0.00
1.800
-4.052
-2.111
A
N
VAL
20
ATOM
A
N
VAL
1
20
1.00
1
N
0.00
3.159
-4.513
-2.319
A
CA
VAL
20
ATOM
A
CA
VAL
1
20
1.00
1
C
0.00
3.500
-5.623
-1.339
A
C
VAL
20
ATOM
A
C
VAL
1
20
1.00
1
C
0.00
4.023
-6.667
-1.724
A
O
VAL
20
ATOM
A
O
VAL
1
20
1.00
1
O
0.00
1.661
-3.098
-1.808
A
H
VAL
20
ATOM
A
H
VAL
1
20
1.00
1
H
0.00
3.196
-5.381
-0.067
A
N
VAL
21
ATOM
A
N
VAL
1
21
1.00
1
N
0.00
3.457
-6.340
0.989
A
CA
VAL
21
ATOM
A
CA
VAL
1
21
1.00
1
C
0.00
2.582
-7.570
0.820
A
C
VAL
21
ATOM
A
C
VAL
1
21
1.00
1
C
0.00
3.080
-8.690
0.721
A
O
VAL
21
ATOM
A
O
VAL
1
21
1.00
1
O
0.00
2.767
-4.501
0.184
A
H
VAL
21
ATOM
A
H
VAL
1
21
1.00
1
H
0.00
1.272
-7.343
0.787
A
N
TRP
22
ATOM
A
N
TRP
1
22
1.00
1
N
0.00
0.304
-8.412
0.630
A
CA
TRP
22
ATOM
A
CA
TRP
1
22
1.00
1
C
0.00
0.551
-9.170
-0.663
A
C
TRP
22
ATOM
A
C
TRP
1
22
1.00
1
C
0.00
0.391
-10.387
-0.722
A
O
TRP
22
ATOM
A
O
TRP
1
22
1.00
1
O
0.00
0.928
-6.398
0.873
A
H
TRP
22
ATOM
A
H
TRP
1
22
1.00
1
H
0.00
0.944
-8.430
-1.696
A
N
SER
23
ATOM
A
N
SER
1
23
1.00
1
N
0.00
1.220
-9.002
-2.999
A
CA
SER
23
ATOM
A
CA
SER
1
23
1.00
1
C
0.00
2.447
-9.899
-2.937
A
C
SER
23
ATOM
A
C
SER
1
23
1.00
1
C
0.00
2.436
-11.018
-3.445
A
O
SER
23
ATOM
A
O
SER
1
23
1.00
1
O
0.00
1.057
-7.433
-1.580
A
H
SER
23
ATOM
A
H
SER
1
23
1.00
1
H
0.00
3.499
-9.389
-2.306
A
N
ILE
24
ATOM
A
N
ILE
1
24
1.00
1
N
0.00
4.745
-10.119
-2.161
A
CA
ILE
24
ATOM
A
CA
ILE
1
24
1.00
1
C
0.00
4.508
-11.436
-1.439
A
C
ILE
24
ATOM
A
C
ILE
1
24
1.00
1
C
0.00
5.070
-12.466
-1.806
A
O
ILE
24
ATOM
A
O
ILE
1
24
1.00
1
O
0.00
3.441
-8.462
-1.908
A
H
ILE
24
ATOM
A
H
ILE
1
24
1.00
1
H
0.00
3.668
-11.385
-0.410
A
N
VAL
25
ATOM
A
N
VAL
1
25
1.00
1
N
0.00
3.338
-12.555
0.380
A
CA
VAL
25
ATOM
A
CA
VAL
1
25
1.00
1
C
0.00
3.238
-10.505
-0.162
A
H
VAL
25
ATOM
A
H
VAL
1
25
1.00
1
H
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Park, S.H.
Mrse, A.A.
Nevzorov, A.A.
Mesleh, M.F.
Oblatt-Montal, M.
Montal, M.
Opella, S.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
C
N
48
N
O
N
49
N
N
N
50
N
O
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
N
N
62
S
C
N
63
N
C
N
64
N
O
N
65
N
C
N
66
N
C
N
67
N
C
N
68
N
O
N
69
N
O
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
N
N
81
N
C
N
82
N
C
N
83
N
O
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
S
C
N
95
N
C
N
96
N
C
N
97
N
C
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
N
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
C
N
165
N
S
N
166
N
C
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
O
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
Y
215
N
C
Y
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
Y
211
N
doub
Y
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
doub
Y
216
N
sing
Y
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
Y
239
N
doub
Y
240
N
sing
Y
241
N
sing
N
242
N
sing
Y
243
N
doub
N
244
N
sing
Y
245
N
doub
N
246
N
sing
Y
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
333
409
424
10.1016/j.jmb.2003.08.048
14529626
Three-dimensional structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1
2003
10.2210/pdb1pje/pdb
pdb_00001pje
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3873.885
VPU protein
Trans-membrane domain
Y29G
1
man
polymer
U ORF protein
no
no
MQPIQIAIVALVVAIIIAIVVWSIVIIEGRGGKKKK
MQPIQIAIVALVVAIIIAIVVWSIVIIEGRGGKKKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
sample
VPU
11676
Human immunodeficiency virus 1
562
Escherichia coli
BLR(DE3)pLysS
plasmid
pET-31b(+)
database_2
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
2003-10-14
1
1
2008-04-29
1
2
2011-07-13
1
3
2021-10-27
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1-NMR, 4 STRUCTURES
RCSB
Y
RCSB
2003-06-02
REL
PISEMA: Polarization Inversion Spin Exchange at the Magic Angle
minimized average structure
100
1
PISEMA
7.0
ambient
293
K
This structure was calculated by using a structural fitting algorithm that finds torsion angles between consecutive residues based on their NMR frequencies
Direct structural fitting of 2D solid-state NMR data
1
minimized average structure
Completely aligned sample in glass plates: 3.5 mg Vpu2-30+ U-15N, 75 mg lipid mixture (DOPC:DOPG, 9:1)
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax
processing
NMRPipe
2.1
Nevzorov, Opella
structure solution
Structural Fitting
1.0
Nevzorov, Opella
refinement
Structural Fitting
1.0
700
Bruker
AVANCE
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
ALA
7
n
7
ALA
7
A
ILE
8
n
8
ILE
8
A
VAL
9
n
9
VAL
9
A
ALA
10
n
10
ALA
10
A
LEU
11
n
11
LEU
11
A
VAL
12
n
12
VAL
12
A
VAL
13
n
13
VAL
13
A
ALA
14
n
14
ALA
14
A
ILE
15
n
15
ILE
15
A
ILE
16
n
16
ILE
16
A
ILE
17
n
17
ILE
17
A
ALA
18
n
18
ALA
18
A
ILE
19
n
19
ILE
19
A
VAL
20
n
20
VAL
20
A
VAL
21
n
21
VAL
21
A
TRP
22
n
22
TRP
22
A
SER
23
n
23
SER
23
A
ILE
24
n
24
ILE
24
A
VAL
25
n
25
VAL
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
N
ALA
7
A
N
ALA
7
1
Y
1
A
CB
ALA
7
A
CB
ALA
7
1
Y
1
A
CB
ILE
8
A
CB
ILE
8
1
Y
1
A
CG1
ILE
8
A
CG1
ILE
8
1
Y
1
A
CG2
ILE
8
A
CG2
ILE
8
1
Y
1
A
CD1
ILE
8
A
CD1
ILE
8
1
Y
1
A
CB
VAL
9
A
CB
VAL
9
1
Y
1
A
CG1
VAL
9
A
CG1
VAL
9
1
Y
1
A
CG2
VAL
9
A
CG2
VAL
9
1
Y
1
A
CB
ALA
10
A
CB
ALA
10
1
Y
1
A
CB
LEU
11
A
CB
LEU
11
1
Y
1
A
CG
LEU
11
A
CG
LEU
11
1
Y
1
A
CD1
LEU
11
A
CD1
LEU
11
1
Y
1
A
CD2
LEU
11
A
CD2
LEU
11
1
Y
1
A
CB
VAL
12
A
CB
VAL
12
1
Y
1
A
CG1
VAL
12
A
CG1
VAL
12
1
Y
1
A
CG2
VAL
12
A
CG2
VAL
12
1
Y
1
A
CB
VAL
13
A
CB
VAL
13
1
Y
1
A
CG1
VAL
13
A
CG1
VAL
13
1
Y
1
A
CG2
VAL
13
A
CG2
VAL
13
1
Y
1
A
CB
ALA
14
A
CB
ALA
14
1
Y
1
A
CB
ILE
15
A
CB
ILE
15
1
Y
1
A
CG1
ILE
15
A
CG1
ILE
15
1
Y
1
A
CG2
ILE
15
A
CG2
ILE
15
1
Y
1
A
CD1
ILE
15
A
CD1
ILE
15
1
Y
1
A
CB
ILE
16
A
CB
ILE
16
1
Y
1
A
CG1
ILE
16
A
CG1
ILE
16
1
Y
1
A
CG2
ILE
16
A
CG2
ILE
16
1
Y
1
A
CD1
ILE
16
A
CD1
ILE
16
1
Y
1
A
CB
ILE
17
A
CB
ILE
17
1
Y
1
A
CG1
ILE
17
A
CG1
ILE
17
1
Y
1
A
CG2
ILE
17
A
CG2
ILE
17
1
Y
1
A
CD1
ILE
17
A
CD1
ILE
17
1
Y
1
A
CB
ALA
18
A
CB
ALA
18
1
Y
1
A
CB
ILE
19
A
CB
ILE
19
1
Y
1
A
CG1
ILE
19
A
CG1
ILE
19
1
Y
1
A
CG2
ILE
19
A
CG2
ILE
19
1
Y
1
A
CD1
ILE
19
A
CD1
ILE
19
1
Y
1
A
CB
VAL
20
A
CB
VAL
20
1
Y
1
A
CG1
VAL
20
A
CG1
VAL
20
1
Y
1
A
CG2
VAL
20
A
CG2
VAL
20
1
Y
1
A
CB
VAL
21
A
CB
VAL
21
1
Y
1
A
CG1
VAL
21
A
CG1
VAL
21
1
Y
1
A
CG2
VAL
21
A
CG2
VAL
21
1
Y
1
A
CB
TRP
22
A
CB
TRP
22
1
Y
1
A
CG
TRP
22
A
CG
TRP
22
1
Y
1
A
CD1
TRP
22
A
CD1
TRP
22
1
Y
1
A
CD2
TRP
22
A
CD2
TRP
22
1
Y
1
A
NE1
TRP
22
A
NE1
TRP
22
1
Y
1
A
CE2
TRP
22
A
CE2
TRP
22
1
Y
1
A
CE3
TRP
22
A
CE3
TRP
22
1
Y
1
A
CZ2
TRP
22
A
CZ2
TRP
22
1
Y
1
A
CZ3
TRP
22
A
CZ3
TRP
22
1
Y
1
A
CH2
TRP
22
A
CH2
TRP
22
1
Y
1
A
CB
SER
23
A
CB
SER
23
1
Y
1
A
OG
SER
23
A
OG
SER
23
1
Y
1
A
CB
ILE
24
A
CB
ILE
24
1
Y
1
A
CG1
ILE
24
A
CG1
ILE
24
1
Y
1
A
CG2
ILE
24
A
CG2
ILE
24
1
Y
1
A
CD1
ILE
24
A
CD1
ILE
24
1
Y
1
A
C
VAL
25
A
C
VAL
25
1
Y
1
A
O
VAL
25
A
O
VAL
25
1
Y
1
A
CB
VAL
25
A
CB
VAL
25
1
Y
1
A
CG1
VAL
25
A
CG1
VAL
25
1
Y
1
A
CG2
VAL
25
A
CG2
VAL
25
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
GLN
2
A
GLN
2
1
Y
1
A
PRO
3
A
PRO
3
1
Y
1
A
ILE
4
A
ILE
4
1
Y
1
A
GLN
5
A
GLN
5
1
Y
1
A
ILE
6
A
ILE
6
1
Y
1
A
ILE
26
A
ILE
26
1
Y
1
A
ILE
27
A
ILE
27
1
Y
1
A
GLU
28
A
GLU
28
1
Y
1
A
GLY
29
A
GLY
29
1
Y
1
A
ARG
30
A
ARG
30
1
Y
1
A
GLY
31
A
GLY
31
1
Y
1
A
GLY
32
A
GLY
32
1
Y
1
A
LYS
33
A
LYS
33
1
Y
1
A
LYS
34
A
LYS
34
1
Y
1
A
LYS
35
A
LYS
35
1
Y
1
A
LYS
36
A
LYS
36
1
Y
1
A
A
O
H
LEU
ILE
11
15
1.38
1
A
A
O
H
ALA
TRP
18
22
1.46
Structure of the channel-forming trans-membrane domain of Virus protein "u"(Vpu) from HIV-1
1
N
N
A
ILE
8
A
ILE
8
HELX_P
A
VAL
25
A
VAL
25
1
1
18
VIRAL PROTEIN
ALPHA-HELIX, Viral protein
VPU_HV1LW
UNP
1
1
Q70625
MQPIQIAIVALVVAIIIAIVVWSIVIIEYR
1
30
1PJE
1
30
Q70625
A
1
1
30
1
TYR
engineered mutation
GLY
29
1PJE
A
Q70625
UNP
29
29
1
cloning artifact
GLY
31
1PJE
A
Q70625
UNP
31
1
cloning artifact
GLY
32
1PJE
A
Q70625
UNP
32
1
cloning artifact
LYS
33
1PJE
A
Q70625
UNP
33
1
cloning artifact
LYS
34
1PJE
A
Q70625
UNP
34
1
cloning artifact
LYS
35
1PJE
A
Q70625
UNP
35
1
cloning artifact
LYS
36
1PJE
A
Q70625
UNP
36