0.038909
0.000000
0.000000
0.000000
0.024347
0.000000
0.000000
0.000000
0.021684
0.00000
0.00000
0.00000
Kopka, M.L.
Lavelle, L.
Han, G.W.
Ng, H.-L.
Dickerson, R.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
25.701
41.073
46.116
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
Ca 2
40.078
CALCIUM ION
non-polymer
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
CA
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
N
86
N
N
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
Y
120
N
N
Y
121
N
C
Y
122
N
N
Y
123
N
C
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
N
N
129
N
N
Y
130
N
C
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
N
C
N
156
R
C
N
157
N
N
N
158
N
C
N
159
N
O
N
160
N
N
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
R
C
N
192
N
O
N
193
R
C
Y
194
N
N
Y
195
N
C
Y
196
N
N
Y
197
N
C
N
198
N
C
N
199
N
O
N
200
N
N
N
201
N
C
N
202
N
N
N
203
N
N
Y
204
N
C
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
O
N
220
N
H
N
221
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
Y
134
N
sing
Y
135
N
sing
Y
136
N
doub
N
137
N
sing
Y
138
N
sing
N
139
N
sing
Y
140
N
doub
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
Y
211
N
sing
Y
212
N
sing
Y
213
N
doub
N
214
N
sing
Y
215
N
sing
N
216
N
sing
Y
217
N
doub
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
334
653
665
10.1016/j.jmb.2003.09.057
14636594
An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.
2003
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
213
218
10.1107/S0907444900017595
Direct Methods Determination of an RNA/DNA Hybrid Decamer at 1.15A Resolution
2001
To be Published
0353
Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular
Intercalation: Dimer Formation by Base-pair Swapping
2003
10.2210/pdb1pjg/pdb
pdb_00001pjg
123
1
mirrors
CCD
1999-10-27
ADSC QUANTUM 4
mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.07200
1.0
X8C
NSLS
1.07200
SYNCHROTRON
NSLS BEAMLINE X8C
3255.076
5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'
Polypurine Tract of HIV-1
1
syn
polymer
2991.961
5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'
1
syn
polymer
40.078
CALCIUM ION
4
syn
non-polymer
18.015
water
124
nat
water
no
no
CAAAGAAAAG
CAAAGAAAAG
A
polyribonucleotide
no
no
(DC)(DT)(DT)(DT)(DT)(DC)(DT)(DT)(DT)(DG)
CTTTTCTTTG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
1.93
36.38
VAPOR DIFFUSION, HANGING DROP
6.8
calcium acetate, cacodylate, beta-octylglucoside, spermidine hydrochloride,
2-methyl,2,4-pentanediol, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 278K
278
calcium acetate
1
cacodylate
1
beta-octylglucoside
1
spermidine HCl
1
2-methyl,2,4-pentanediol
1
calcium acetate
2
2-methyl,2,4-pentanediol
2
-27.603
1
19
A
1
B
20
-2.053
A_C1:DG20_B
1
-11.591
0.062
0.595
-0.059
4.117
1
20
A
2
B
19
-4.074
A_A2:DT19_B
2
-7.661
0.073
-0.044
-0.105
6.983
1
20
A
3
B
18
0.111
A_A3:DT18_B
3
-21.085
-0.018
0.251
-0.153
0.592
1
20
A
4
B
17
11.907
A_A4:DT17_B
4
-24.926
0.030
0.088
-0.063
-18.398
1
19
A
5
B
16
-1.300
A_G5:DC16_B
5
-5.100
-0.267
-0.261
-0.156
-16.435
1
20
A
6
B
15
-2.781
A_A6:DT15_B
6
-4.501
0.107
-0.319
-0.119
-4.640
1
20
A
7
B
14
0.170
A_A7:DT14_B
7
-5.931
0.055
-0.101
-0.112
-1.369
1
20
A
8
B
13
3.333
A_A8:DT13_B
8
-12.642
-0.045
-0.089
-0.171
-4.920
1
20
A
9
B
12
1.540
A_A9:DT12_B
9
-4.145
-0.103
-0.108
-0.166
6.679
1
19
A
10
B
11
2.862
A_G10:DC11_B
10
-6.456
-0.064
0.097
-0.049
2.735
28.884
A
A
1
2
17.375
B
B
20
19
2.757
8.532
-0.231
0.436
AA_C1A2:DT19DG20_BB
1
2.481
-5.052
27.511
-0.758
0.939
3.175
34.352
A
A
2
3
-0.830
B
B
19
18
3.241
-0.489
0.328
-0.953
AA_A2A3:DT18DT19_BB
2
-5.007
8.506
33.993
-1.538
-1.328
3.216
33.328
A
A
3
4
11.819
B
B
18
17
3.506
6.733
0.598
-1.027
AA_A3A4:DT17DT18_BB
3
-1.002
1.758
32.645
-2.955
-1.216
2.974
42.753
A
A
4
5
26.552
B
B
17
16
3.553
18.662
-1.821
-1.181
AA_A4G5:DC16DT17_BB
4
-7.328
10.427
37.957
-3.609
1.718
2.709
33.641
A
A
5
6
18.916
B
B
16
15
3.393
10.747
0.217
-1.669
AA_G5A6:DT15DC16_BB
5
3.408
-5.999
31.747
-4.571
0.160
2.667
27.646
A
A
6
7
15.829
B
B
15
14
3.167
7.468
0.707
-1.595
AA_A6A7:DT14DT15_BB
6
1.731
-3.670
26.581
-4.989
-1.096
2.796
25.995
A
A
7
8
11.924
B
B
14
13
3.253
5.326
1.011
-2.110
AA_A7A8:DT13DT14_BB
7
0.975
-2.184
25.434
-6.060
-1.996
3.068
37.599
A
A
8
9
9.365
B
B
13
12
3.248
6.001
-1.258
-1.634
AA_A8A9:DT12DT13_BB
8
-3.942
6.151
36.931
-3.297
1.452
2.884
28.450
A
A
9
10
5.271
B
B
12
11
3.037
2.587
0.743
-1.751
AA_A9G10:DC11DT12_BB
9
0.627
-1.277
28.328
-4.101
-1.382
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-12-09
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Same sequence and crystal, solved by Direct Methods
Same sequence crystallized in different space group with different packing
Same sequence, MgOAc in the crystallization batch
RCSB
Y
RCSB
2003-06-02
REL
REL
CA
CALCIUM ION
HOH
water
OC6
32
3
CA
CA
32
A
OC5
33
3
CA
CA
33
A
OC4
31
3
CA
CA
31
B
OC4
34
3
CA
CA
34
B
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
37
4
HOH
HOH
37
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
49
4
HOH
HOH
49
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
58
4
HOH
HOH
58
A
HOH
60
4
HOH
HOH
60
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
68
4
HOH
HOH
68
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
72
4
HOH
HOH
72
A
HOH
73
4
HOH
HOH
73
A
HOH
76
4
HOH
HOH
76
A
HOH
77
4
HOH
HOH
77
A
HOH
78
4
HOH
HOH
78
A
HOH
83
4
HOH
HOH
83
A
HOH
84
4
HOH
HOH
84
A
HOH
85
4
HOH
HOH
85
A
HOH
86
4
HOH
HOH
86
A
HOH
88
4
HOH
HOH
88
A
HOH
94
4
HOH
HOH
94
A
HOH
98
4
HOH
HOH
98
A
HOH
103
4
HOH
HOH
103
A
HOH
106
4
HOH
HOH
106
A
HOH
107
4
HOH
HOH
107
A
HOH
109
4
HOH
HOH
109
A
HOH
111
4
HOH
HOH
111
A
HOH
114
4
HOH
HOH
114
A
HOH
116
4
HOH
HOH
116
A
HOH
117
4
HOH
HOH
117
A
HOH
118
4
HOH
HOH
118
A
HOH
120
4
HOH
HOH
120
A
HOH
121
4
HOH
HOH
121
A
HOH
122
4
HOH
HOH
122
A
HOH
126
4
HOH
HOH
126
A
HOH
127
4
HOH
HOH
127
A
HOH
128
4
HOH
HOH
128
A
HOH
130
4
HOH
HOH
130
A
HOH
131
4
HOH
HOH
131
A
HOH
132
4
HOH
HOH
132
A
HOH
133
4
HOH
HOH
133
A
OC6
32
4
HOH
HOH
138
A
OC6
32
4
HOH
HOH
139
A
OC6
32
4
HOH
HOH
140
A
OC6
32
4
HOH
HOH
141
A
OC6
32
4
HOH
HOH
142
A
OC6
32
4
HOH
HOH
143
A
OC5
33
4
HOH
HOH
144
A
OC5
33
4
HOH
HOH
145
A
OC5
33
4
HOH
HOH
146
A
OC5
33
4
HOH
HOH
147
A
OC5
33
4
HOH
HOH
148
A
HOH
25
4
HOH
HOH
25
B
HOH
26
4
HOH
HOH
26
B
HOH
29
4
HOH
HOH
29
B
HOH
30
4
HOH
HOH
30
B
HOH
35
4
HOH
HOH
35
B
HOH
36
4
HOH
HOH
36
B
HOH
38
4
HOH
HOH
38
B
HOH
39
4
HOH
HOH
39
B
HOH
42
4
HOH
HOH
42
B
HOH
43
4
HOH
HOH
43
B
HOH
47
4
HOH
HOH
47
B
HOH
48
4
HOH
HOH
48
B
HOH
50
4
HOH
HOH
50
B
HOH
55
4
HOH
HOH
55
B
HOH
59
4
HOH
HOH
59
B
HOH
61
4
HOH
HOH
61
B
HOH
64
4
HOH
HOH
64
B
HOH
67
4
HOH
HOH
67
B
HOH
69
4
HOH
HOH
69
B
HOH
74
4
HOH
HOH
74
B
HOH
75
4
HOH
HOH
75
B
HOH
79
4
HOH
HOH
79
B
HOH
80
4
HOH
HOH
80
B
HOH
81
4
HOH
HOH
81
B
HOH
82
4
HOH
HOH
82
B
HOH
87
4
HOH
HOH
87
B
HOH
89
4
HOH
HOH
89
B
HOH
90
4
HOH
HOH
90
B
HOH
91
4
HOH
HOH
91
B
HOH
92
4
HOH
HOH
92
B
HOH
93
4
HOH
HOH
93
B
HOH
95
4
HOH
HOH
95
B
HOH
96
4
HOH
HOH
96
B
HOH
97
4
HOH
HOH
97
B
HOH
99
4
HOH
HOH
99
B
HOH
100
4
HOH
HOH
100
B
HOH
101
4
HOH
HOH
101
B
HOH
102
4
HOH
HOH
102
B
HOH
104
4
HOH
HOH
104
B
HOH
105
4
HOH
HOH
105
B
HOH
108
4
HOH
HOH
108
B
HOH
110
4
HOH
HOH
110
B
HOH
112
4
HOH
HOH
112
B
HOH
113
4
HOH
HOH
113
B
HOH
115
4
HOH
HOH
115
B
HOH
119
4
HOH
HOH
119
B
HOH
123
4
HOH
HOH
123
B
HOH
124
4
HOH
HOH
124
B
HOH
125
4
HOH
HOH
125
B
HOH
129
4
HOH
HOH
129
B
OC4
31
4
HOH
HOH
134
B
OC4
31
4
HOH
HOH
135
B
OC4
31
4
HOH
HOH
136
B
OC4
31
4
HOH
HOH
137
B
OC4
34
4
HOH
HOH
149
B
OC4
34
4
HOH
HOH
150
B
OC4
34
4
HOH
HOH
151
B
OC4
34
4
HOH
HOH
152
B
C
1
n
1
C
1
A
A
2
n
2
A
2
A
A
3
n
3
A
3
A
A
4
n
4
A
4
A
G
5
n
5
G
5
A
A
6
n
6
A
6
A
A
7
n
7
A
7
A
A
8
n
8
A
8
A
A
9
n
9
A
9
A
G
10
n
10
G
10
A
C
11
n
1
DC
11
B
T
12
n
2
DT
12
B
T
13
n
3
DT
13
B
T
14
n
4
DT
14
B
T
15
n
5
DT
15
B
C
16
n
6
DC
16
B
T
17
n
7
DT
17
B
T
18
n
8
DT
18
B
T
19
n
9
DT
19
B
G
20
n
10
DG
20
B
0.129
0.132
0.158
820
5.000
15369
author_defined_assembly
2
dimeric
A
G
5
A
OP2
G
5
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
84
G
O
HOH
1_555
56.2
A
G
5
A
OP2
G
5
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
138
A
G
O
HOH
1_555
84.4
A
HOH
84
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
138
A
G
O
HOH
1_555
78.2
A
G
5
A
OP2
G
5
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
139
G
O
HOH
1_555
158.9
A
HOH
84
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
139
G
O
HOH
1_555
137.5
A
HOH
138
A
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
139
G
O
HOH
1_555
84.1
A
G
5
A
OP2
G
5
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
140
G
O
HOH
1_555
90.3
A
HOH
84
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
140
G
O
HOH
1_555
112.0
A
HOH
138
A
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
140
G
O
HOH
1_555
163.1
A
HOH
139
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
140
G
O
HOH
1_555
95.6
A
G
5
A
OP2
G
5
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
141
A
G
O
HOH
1_555
94.2
A
HOH
84
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
141
A
G
O
HOH
1_555
137.5
A
HOH
138
A
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
141
A
G
O
HOH
1_555
68.2
A
HOH
139
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
141
A
G
O
HOH
1_555
65.0
A
HOH
140
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
141
A
G
O
HOH
1_555
96.3
A
G
5
A
OP2
G
5
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
142
A
G
O
HOH
1_555
85.0
A
HOH
84
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
142
A
G
O
HOH
1_555
45.8
A
HOH
138
A
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
142
A
G
O
HOH
1_555
117.2
A
HOH
139
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
142
A
G
O
HOH
1_555
116.0
A
HOH
140
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
142
A
G
O
HOH
1_555
78.2
A
HOH
141
A
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
142
A
G
O
HOH
1_555
174.4
A
G
5
A
OP2
G
5
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
120.7
A
HOH
84
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
67.0
A
HOH
138
A
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
68.2
A
HOH
139
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
70.6
A
HOH
140
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
127.7
A
HOH
141
A
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
119.4
A
HOH
142
A
G
O
HOH
1_555
A
CA
32
A
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
65.5
A
A
9
A
OP2
A
9
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
144
G
O
HOH
1_555
173.5
A
A
9
A
OP2
A
9
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
145
G
O
HOH
1_555
91.5
A
HOH
144
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
145
G
O
HOH
1_555
88.2
A
A
9
A
OP2
A
9
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
146
G
O
HOH
1_555
93.1
A
HOH
144
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
146
G
O
HOH
1_555
93.3
A
HOH
145
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
146
G
O
HOH
1_555
90.2
A
A
9
A
OP2
A
9
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
147
G
O
HOH
1_555
87.3
A
HOH
144
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
147
G
O
HOH
1_555
93.0
A
HOH
145
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
147
G
O
HOH
1_555
178.7
A
HOH
146
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
147
G
O
HOH
1_555
90.4
A
A
9
A
OP2
A
9
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
148
G
O
HOH
1_555
86.2
A
HOH
144
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
148
G
O
HOH
1_555
87.4
A
HOH
145
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
148
G
O
HOH
1_555
89.0
A
HOH
146
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
148
G
O
HOH
1_555
178.9
A
HOH
147
G
O
HOH
1_555
A
CA
33
D
CA
CA
1_555
A
HOH
148
G
O
HOH
1_555
90.4
A
A
9
A
OP1
A
9
3_646
B
CA
31
E
CA
CA
1_555
B
DT
18
B
OP2
DT
8
1_555
90.8
A
A
9
A
OP1
A
9
3_646
B
CA
31
E
CA
CA
1_555
B
HOH
134
H
O
HOH
1_555
83.0
B
DT
18
B
OP2
DT
8
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
134
H
O
HOH
1_555
92.4
A
A
9
A
OP1
A
9
3_646
B
CA
31
E
CA
CA
1_555
B
HOH
135
H
O
HOH
1_555
83.9
B
DT
18
B
OP2
DT
8
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
135
H
O
HOH
1_555
171.8
B
HOH
134
H
O
HOH
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
135
H
O
HOH
1_555
93.1
A
A
9
A
OP1
A
9
3_646
B
CA
31
E
CA
CA
1_555
B
HOH
136
H
O
HOH
1_555
99.4
B
DT
18
B
OP2
DT
8
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
136
H
O
HOH
1_555
92.0
B
HOH
134
H
O
HOH
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
136
H
O
HOH
1_555
174.9
B
HOH
135
H
O
HOH
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
136
H
O
HOH
1_555
82.7
A
A
9
A
OP1
A
9
3_646
B
CA
31
E
CA
CA
1_555
B
HOH
137
H
O
HOH
1_555
172.4
B
DT
18
B
OP2
DT
8
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
137
H
O
HOH
1_555
96.6
B
HOH
134
H
O
HOH
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
137
H
O
HOH
1_555
94.8
B
HOH
135
H
O
HOH
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
137
H
O
HOH
1_555
89.0
B
HOH
136
H
O
HOH
1_555
B
CA
31
E
CA
CA
1_555
B
HOH
137
H
O
HOH
1_555
82.2
A
G
10
A
OP1
G
10
3_646
B
CA
34
F
CA
CA
1_555
B
DT
18
B
OP1
DT
8
1_555
91.2
A
G
10
A
OP1
G
10
3_646
B
CA
34
F
CA
CA
1_555
B
DG
20
B
B
OP1
DG
10
4_567
69.5
B
DT
18
B
OP1
DT
8
1_555
B
CA
34
F
CA
CA
1_555
B
DG
20
B
B
OP1
DG
10
4_567
78.4
A
G
10
A
OP1
G
10
3_646
B
CA
34
F
CA
CA
1_555
B
HOH
149
H
O
HOH
1_555
87.4
B
DT
18
B
OP1
DT
8
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
149
H
O
HOH
1_555
164.0
B
DG
20
B
B
OP1
DG
10
4_567
B
CA
34
F
CA
CA
1_555
B
HOH
149
H
O
HOH
1_555
86.2
A
G
10
A
OP1
G
10
3_646
B
CA
34
F
CA
CA
1_555
B
HOH
150
H
O
HOH
1_555
122.7
B
DT
18
B
OP1
DT
8
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
150
H
O
HOH
1_555
90.4
B
DG
20
B
B
OP1
DG
10
4_567
B
CA
34
F
CA
CA
1_555
B
HOH
150
H
O
HOH
1_555
54.9
B
HOH
149
H
O
HOH
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
150
H
O
HOH
1_555
77.1
A
G
10
A
OP1
G
10
3_646
B
CA
34
F
CA
CA
1_555
B
HOH
151
H
O
HOH
1_555
157.9
B
DT
18
B
OP1
DT
8
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
151
H
O
HOH
1_555
94.3
B
DG
20
B
B
OP1
DG
10
4_567
B
CA
34
F
CA
CA
1_555
B
HOH
151
H
O
HOH
1_555
132.6
B
HOH
149
H
O
HOH
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
151
H
O
HOH
1_555
93.0
B
HOH
150
H
O
HOH
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
151
H
O
HOH
1_555
78.7
A
G
10
A
OP1
G
10
3_646
B
CA
34
F
CA
CA
1_555
B
HOH
152
H
O
HOH
1_555
80.5
B
DT
18
B
OP1
DT
8
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
152
H
O
HOH
1_555
87.0
B
DG
20
B
B
OP1
DG
10
4_567
B
CA
34
F
CA
CA
1_555
B
HOH
152
H
O
HOH
1_555
146.0
B
HOH
149
H
O
HOH
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
152
H
O
HOH
1_555
108.4
B
HOH
150
H
O
HOH
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
152
H
O
HOH
1_555
156.7
B
HOH
151
H
O
HOH
1_555
B
CA
34
F
CA
CA
1_555
B
HOH
152
H
O
HOH
1_555
78.4
A
HOH
138
B
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
139
G
O
HOH
1_555
83.9
A
HOH
138
B
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
140
G
O
HOH
1_555
71.7
A
HOH
139
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
140
G
O
HOH
1_555
83.8
A
HOH
138
B
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
141
B
G
O
HOH
1_555
89.0
A
HOH
139
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
141
B
G
O
HOH
1_555
72.1
A
HOH
140
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
141
B
G
O
HOH
1_555
150.7
A
HOH
138
B
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
142
B
G
O
HOH
1_555
82.6
A
HOH
139
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
142
B
G
O
HOH
1_555
166.0
A
HOH
140
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
142
B
G
O
HOH
1_555
95.3
A
HOH
141
B
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
142
B
G
O
HOH
1_555
104.0
A
HOH
138
B
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
147.8
A
HOH
139
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
64.4
A
HOH
140
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
108.3
A
HOH
141
B
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
76.5
A
HOH
142
B
G
O
HOH
1_555
A
CA
32
B
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
128.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
9.42
1.30
114.00
123.42
A
A
A
N1
C1'
C2'
C
C
C
1
1
1
N
1
5.14
0.70
108.50
113.64
A
A
A
O4'
C1'
N9
A
A
A
2
2
2
N
1
-8.91
1.10
112.00
103.09
A
A
A
N9
C1'
C2'
G
G
G
10
10
10
N
1
5.37
0.70
108.50
113.87
A
A
A
O4'
C1'
N9
G
G
G
10
10
10
N
1
1.93
0.30
108.30
110.23
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
3.10
0.30
108.30
111.40
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
1
2.49
0.30
108.30
110.79
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
1
-5.89
0.80
109.40
103.51
B
B
B
O5'
C5'
C4'
DG
DG
DG
20
20
20
B
B
B
N
1
5.45
0.90
103.10
108.55
B
B
B
C4'
C3'
C2'
DG
DG
DG
20
20
20
B
B
N
1
4.02
0.30
108.30
112.32
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
A
N
1
3.08
0.30
108.30
111.38
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
B
N
1
A
A
C2'
C1'
G
G
10
10
0.077
0.011
1.529
1.606
N
1
B
B
C2'
C1'
DG
DG
20
20
0.061
0.010
1.519
1.580
N
10.71
0.163
0.132
1.15
8.0
871
16497
16497
5.
95.1
random
1
0.0
MOLECULAR REPLACEMENT
NDB ID AH0001
1.00
1.00
1.15
8.0
124
542
4
414
0
0.027
0.009
0.132
1.18
93.9
8.170
1.15
50.00
1PJG
17368
4.7
0.081
1
29.6
96.2
0.261
1.15
1.18
11.09
882
93.9
data collection
ADSC
Quantum 4
data scaling
SCALEPACK
phasing
EPMR
refinement
SHELXL-97
data reduction
DENZO
RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
metalc
2.283
A
A
G
5
A
OP2
G
5
1_555
A
CA
32
C
CA
CA
1_555
metalc
2.011
A
A
9
A
OP2
A
9
1_555
A
CA
33
D
CA
CA
1_555
metalc
2.195
A
A
9
A
OP1
A
9
3_646
B
CA
31
E
CA
CA
1_555
metalc
2.213
A
G
10
A
OP1
G
10
3_646
B
CA
34
F
CA
CA
1_555
metalc
3.263
A
A
CA
32
C
CA
CA
1_555
A
HOH
84
G
O
HOH
1_555
metalc
2.227
A
A
A
CA
32
C
CA
CA
1_555
A
HOH
138
G
O
HOH
1_555
metalc
2.510
B
B
A
CA
32
C
CA
CA
1_555
A
HOH
138
G
O
HOH
1_555
metalc
2.100
A
A
CA
32
C
CA
CA
1_555
A
HOH
139
G
O
HOH
1_555
metalc
2.279
B
A
CA
32
C
CA
CA
1_555
A
HOH
139
G
O
HOH
1_555
metalc
2.009
A
A
CA
32
C
CA
CA
1_555
A
HOH
140
G
O
HOH
1_555
metalc
2.277
B
A
CA
32
C
CA
CA
1_555
A
HOH
140
G
O
HOH
1_555
metalc
2.122
A
A
A
CA
32
C
CA
CA
1_555
A
HOH
141
G
O
HOH
1_555
metalc
2.573
B
B
A
CA
32
C
CA
CA
1_555
A
HOH
141
G
O
HOH
1_555
metalc
2.524
A
A
A
CA
32
C
CA
CA
1_555
A
HOH
142
G
O
HOH
1_555
metalc
1.922
B
B
A
CA
32
C
CA
CA
1_555
A
HOH
142
G
O
HOH
1_555
metalc
2.216
A
A
CA
32
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
metalc
2.401
B
A
CA
32
C
CA
CA
1_555
A
HOH
143
G
O
HOH
1_555
metalc
2.038
A
CA
33
D
CA
CA
1_555
A
HOH
144
G
O
HOH
1_555
metalc
2.125
A
CA
33
D
CA
CA
1_555
A
HOH
145
G
O
HOH
1_555
metalc
2.099
A
CA
33
D
CA
CA
1_555
A
HOH
146
G
O
HOH
1_555
metalc
2.022
A
CA
33
D
CA
CA
1_555
A
HOH
147
G
O
HOH
1_555
metalc
2.132
A
CA
33
D
CA
CA
1_555
A
HOH
148
G
O
HOH
1_555
metalc
2.237
B
DT
18
B
OP2
DT
8
1_555
B
CA
31
E
CA
CA
1_555
metalc
2.223
B
DT
18
B
OP1
DT
8
1_555
B
CA
34
F
CA
CA
1_555
metalc
2.757
B
B
DG
20
B
OP1
DG
10
4_567
B
CA
34
F
CA
CA
1_555
metalc
2.288
B
CA
31
E
CA
CA
1_555
B
HOH
134
H
O
HOH
1_555
metalc
2.294
B
CA
31
E
CA
CA
1_555
B
HOH
135
H
O
HOH
1_555
metalc
2.259
B
CA
31
E
CA
CA
1_555
B
HOH
136
H
O
HOH
1_555
metalc
2.284
B
CA
31
E
CA
CA
1_555
B
HOH
137
H
O
HOH
1_555
metalc
2.360
B
CA
34
F
CA
CA
1_555
B
HOH
149
H
O
HOH
1_555
metalc
2.019
B
CA
34
F
CA
CA
1_555
B
HOH
150
H
O
HOH
1_555
metalc
2.462
B
CA
34
F
CA
CA
1_555
B
HOH
151
H
O
HOH
1_555
metalc
2.473
B
CA
34
F
CA
CA
1_555
B
HOH
152
H
O
HOH
1_555
hydrog
WATSON-CRICK
A
C
1
A
N3
C
1
1_555
B
DG
20
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
C
1
A
N4
C
1
1_555
B
DG
20
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
C
1
A
O2
C
1
1_555
B
DG
20
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
A
2
A
N1
A
2
1_555
B
DT
19
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
A
A
2
A
N6
A
2
1_555
B
DT
19
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
A
A
3
A
N1
A
3
1_555
B
DT
18
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
A
3
A
N6
A
3
1_555
B
DT
18
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
A
4
A
N1
A
4
1_555
B
DT
17
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
A
4
A
N6
A
4
1_555
B
DT
17
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
G
5
A
N1
G
5
1_555
B
DC
16
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
G
5
A
N2
G
5
1_555
B
DC
16
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
G
5
A
O6
G
5
1_555
B
DC
16
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
A
6
A
N1
A
6
1_555
B
DT
15
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
A
6
A
N6
A
6
1_555
B
DT
15
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
A
7
A
N1
A
7
1_555
B
DT
14
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
A
7
A
N6
A
7
1_555
B
DT
14
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
A
A
8
A
N1
A
8
1_555
B
DT
13
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
A
8
A
N6
A
8
1_555
B
DT
13
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
A
9
A
N1
A
9
1_555
B
DT
12
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
A
9
A
N6
A
9
1_555
B
DT
12
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
G
10
A
N1
G
10
1_555
B
DC
11
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
G
10
A
N2
G
10
1_555
B
DC
11
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
G
10
A
O6
G
10
1_555
B
DC
11
B
N4
DC
1
1_555
DNA-RNA HYBRID
RNA/DNA hybrid; Polypurine Tract of HIV-1; Moleuclar Replacement; sugar conformation, DNA-RNA COMPLEX, DNA-RNA HYBRID
1PJG
PDB
1
1PJG
1PJG
PDB
2
1PJG
1
10
1PJG
1
10
1PJG
A
1
1
10
11
20
1PJG
11
20
1PJG
B
2
1
10
BINDING SITE FOR RESIDUE CA B 31
B
CA
31
Software
6
BINDING SITE FOR RESIDUE CA A 32
A
CA
32
Software
7
BINDING SITE FOR RESIDUE CA A 33
A
CA
33
Software
6
BINDING SITE FOR RESIDUE CA B 34
B
CA
34
Software
7
A
A
9
A
A
9
6
3_646
B
DT
18
B
DT
8
6
1_555
B
HOH
134
H
HOH
6
1_555
B
HOH
135
H
HOH
6
1_555
B
HOH
136
H
HOH
6
1_555
B
HOH
137
H
HOH
6
1_555
A
G
5
A
G
5
7
1_555
A
HOH
138
G
HOH
7
1_555
A
HOH
139
G
HOH
7
1_555
A
HOH
140
G
HOH
7
1_555
A
HOH
141
G
HOH
7
1_555
A
HOH
142
G
HOH
7
1_555
A
HOH
143
G
HOH
7
1_555
A
A
9
A
A
9
6
1_555
A
HOH
144
G
HOH
6
1_555
A
HOH
145
G
HOH
6
1_555
A
HOH
146
G
HOH
6
1_555
A
HOH
147
G
HOH
6
1_555
A
HOH
148
G
HOH
6
1_555
A
G
10
A
G
10
7
3_646
B
DT
18
B
DT
8
7
1_555
B
DG
20
B
DG
10
7
4_567
B
HOH
149
H
HOH
7
1_555
B
HOH
150
H
HOH
7
1_555
B
HOH
151
H
HOH
7
1_555
B
HOH
152
H
HOH
7
1_555
19
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