0.031143
0.000000
0.000000
0.000000
0.020371
0.000000
0.000000
0.000000
0.020247
0.00000
0.00000
0.00000
CIS PROLINE - PRO 30
Tulinsky, A.
Mulichak, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
32.110
49.090
49.390
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
30
10576
10588
10.1021/bi00107a029
1657148
Crystal and molecular structure of human plasminogen kringle 4 refined at 1.9-A resolution.
1991
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
220
481
Structure of Bovine Prothrombin Fragment 1 Refined at 2.25 Angstroms Resolution
1991
UK
Blood Coagulation Fibrinolysis
BLFIE7
0796
0957-5235
1
673
Structure of the Lysine-Fibrin Binding Subsite of Human Plasminogen Kringle 4
1990
US
Proteins
PSFGEY
0867
0887-3585
3
85
Lysine(Slash)Fibrin Binding Sites of Kringles Modeled After the Structure of Kringle 1 of Prothrombin
1988
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
202
885
Structure of Prothrombin Fragment 1 Refined at 2.8 Angstroms Resolution
1988
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
9040.982
PLASMINOGEN KRINGLE 4
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
96
nat
water
no
no
DCYHGDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKKC
DCYHGDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKKC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
2.15
42.83
pdbx_database_status
struct_conf
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
1
0
1993-10-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1991-07-18
REL
SO4
SULFATE ION
HOH
water
SO4
100
2
SO4
SO4
100
A
HOH
1
3
HOH
HOH
101
A
HOH
2
3
HOH
HOH
102
A
HOH
3
3
HOH
HOH
103
A
HOH
4
3
HOH
HOH
104
A
HOH
5
3
HOH
HOH
105
A
HOH
6
3
HOH
HOH
106
A
HOH
7
3
HOH
HOH
107
A
HOH
8
3
HOH
HOH
108
A
HOH
9
3
HOH
HOH
109
A
HOH
10
3
HOH
HOH
110
A
HOH
11
3
HOH
HOH
111
A
HOH
12
3
HOH
HOH
112
A
HOH
13
3
HOH
HOH
113
A
HOH
14
3
HOH
HOH
114
A
HOH
15
3
HOH
HOH
115
A
HOH
16
3
HOH
HOH
116
A
HOH
17
3
HOH
HOH
117
A
HOH
18
3
HOH
HOH
118
A
HOH
19
3
HOH
HOH
119
A
HOH
20
3
HOH
HOH
120
A
HOH
21
3
HOH
HOH
121
A
HOH
22
3
HOH
HOH
122
A
HOH
23
3
HOH
HOH
123
A
HOH
24
3
HOH
HOH
124
A
HOH
25
3
HOH
HOH
125
A
HOH
26
3
HOH
HOH
126
A
HOH
27
3
HOH
HOH
127
A
HOH
28
3
HOH
HOH
128
A
HOH
29
3
HOH
HOH
129
A
HOH
30
3
HOH
HOH
130
A
HOH
31
3
HOH
HOH
131
A
HOH
32
3
HOH
HOH
132
A
HOH
33
3
HOH
HOH
133
A
HOH
34
3
HOH
HOH
134
A
HOH
35
3
HOH
HOH
135
A
HOH
36
3
HOH
HOH
136
A
HOH
37
3
HOH
HOH
137
A
HOH
38
3
HOH
HOH
138
A
HOH
39
3
HOH
HOH
139
A
HOH
40
3
HOH
HOH
140
A
HOH
41
3
HOH
HOH
141
A
HOH
42
3
HOH
HOH
142
A
HOH
43
3
HOH
HOH
143
A
HOH
44
3
HOH
HOH
144
A
HOH
45
3
HOH
HOH
145
A
HOH
46
3
HOH
HOH
146
A
HOH
47
3
HOH
HOH
147
A
HOH
48
3
HOH
HOH
148
A
HOH
49
3
HOH
HOH
149
A
HOH
50
3
HOH
HOH
150
A
HOH
51
3
HOH
HOH
151
A
HOH
52
3
HOH
HOH
152
A
HOH
53
3
HOH
HOH
153
A
HOH
54
3
HOH
HOH
154
A
HOH
55
3
HOH
HOH
155
A
HOH
56
3
HOH
HOH
156
A
HOH
57
3
HOH
HOH
157
A
HOH
58
3
HOH
HOH
158
A
HOH
59
3
HOH
HOH
159
A
HOH
60
3
HOH
HOH
160
A
HOH
61
3
HOH
HOH
161
A
HOH
62
3
HOH
HOH
162
A
HOH
63
3
HOH
HOH
163
A
HOH
64
3
HOH
HOH
164
A
HOH
65
3
HOH
HOH
165
A
HOH
66
3
HOH
HOH
166
A
HOH
67
3
HOH
HOH
167
A
HOH
68
3
HOH
HOH
168
A
HOH
69
3
HOH
HOH
169
A
HOH
70
3
HOH
HOH
170
A
HOH
71
3
HOH
HOH
171
A
HOH
72
3
HOH
HOH
172
A
HOH
73
3
HOH
HOH
173
A
HOH
74
3
HOH
HOH
174
A
HOH
75
3
HOH
HOH
175
A
HOH
76
3
HOH
HOH
176
A
HOH
77
3
HOH
HOH
177
A
HOH
78
3
HOH
HOH
178
A
HOH
79
3
HOH
HOH
179
A
HOH
80
3
HOH
HOH
180
A
HOH
81
3
HOH
HOH
181
A
HOH
82
3
HOH
HOH
182
A
HOH
83
3
HOH
HOH
183
A
HOH
84
3
HOH
HOH
184
A
HOH
85
3
HOH
HOH
185
A
HOH
86
3
HOH
HOH
186
A
HOH
87
3
HOH
HOH
187
A
HOH
88
3
HOH
HOH
188
A
HOH
89
3
HOH
HOH
189
A
HOH
90
3
HOH
HOH
190
A
HOH
91
3
HOH
HOH
191
A
HOH
92
3
HOH
HOH
192
A
HOH
93
3
HOH
HOH
193
A
HOH
94
3
HOH
HOH
194
A
HOH
95
3
HOH
HOH
195
A
HOH
96
3
HOH
HOH
196
A
ASP
0
n
1
ASP
0
A
CYS
1
n
2
CYS
1
A
TYR
2
n
3
TYR
2
A
HIS
3
n
4
HIS
3
A
GLY
4
n
5
GLY
4
A
ASP
5
n
6
ASP
5
A
GLY
6
n
7
GLY
6
A
GLN
7
n
8
GLN
7
A
SER
8
n
9
SER
8
A
TYR
9
n
10
TYR
9
A
ARG
10
n
11
ARG
10
A
GLY
11
n
12
GLY
11
A
THR
12
n
13
THR
12
A
SER
13
n
14
SER
13
A
SER
14
n
15
SER
14
A
THR
15
n
16
THR
15
A
THR
16
n
17
THR
16
A
THR
17
n
18
THR
17
A
THR
18
n
19
THR
18
A
GLY
19
n
20
GLY
19
A
LYS
20
n
21
LYS
20
A
LYS
21
n
22
LYS
21
A
CYS
22
n
23
CYS
22
A
GLN
23
n
24
GLN
23
A
SER
24
n
25
SER
24
A
TRP
25
n
26
TRP
25
A
SER
26
n
27
SER
26
A
SER
27
n
28
SER
27
A
MET
28
n
29
MET
28
A
THR
29
n
30
THR
29
A
PRO
30
n
31
PRO
30
A
HIS
31
n
32
HIS
31
A
ARG
32
n
33
ARG
32
A
HIS
33
n
34
HIS
33
A
GLN
34
n
35
GLN
34
A
LYS
35
n
36
LYS
35
A
THR
37
n
37
THR
37
A
PRO
38
n
38
PRO
38
A
GLU
39
n
39
GLU
39
A
ASN
40
n
40
ASN
40
A
TYR
41
n
41
TYR
41
A
PRO
42
n
42
PRO
42
A
ASN
43
n
43
ASN
43
A
ALA
44
n
44
ALA
44
A
GLY
45
n
45
GLY
45
A
LEU
46
n
46
LEU
46
A
THR
47
n
47
THR
47
A
MET
48
n
48
MET
48
A
ASN
49
n
49
ASN
49
A
TYR
50
n
50
TYR
50
A
CYS
51
n
51
CYS
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
PRO
54
n
54
PRO
54
A
ASP
55
n
55
ASP
55
A
ALA
56
n
56
ALA
56
A
ASP
57
n
57
ASP
57
A
LYS
58
n
58
LYS
58
A
GLY
60
n
59
GLY
60
A
PRO
61
n
60
PRO
61
A
TRP
62
n
61
TRP
62
A
CYS
63
n
62
CYS
63
A
PHE
64
n
63
PHE
64
A
THR
65
n
64
THR
65
A
THR
66
n
65
THR
66
A
ASP
67
n
66
ASP
67
A
PRO
68
n
67
PRO
68
A
SER
69
n
68
SER
69
A
VAL
70
n
69
VAL
70
A
ARG
71
n
70
ARG
71
A
TRP
72
n
71
TRP
72
A
GLU
73
n
72
GLU
73
A
TYR
74
n
73
TYR
74
A
CYS
75
n
74
CYS
75
A
ASN
76
n
75
ASN
76
A
LEU
77
n
76
LEU
77
A
LYS
78
n
77
LYS
78
A
LYS
79
n
78
LYS
79
A
CYS
80
n
79
CYS
80
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CB
ASP
0
A
CB
ASP
1
1
Y
1
A
CG
ASP
0
A
CG
ASP
1
1
Y
1
A
OD1
ASP
0
A
OD1
ASP
1
1
Y
1
A
OD2
ASP
0
A
OD2
ASP
1
1
Y
1
A
OG1
THR
12
A
OG1
THR
13
1
Y
1
A
CG2
THR
12
A
CG2
THR
13
1
Y
1
A
CG
GLU
39
A
CG
GLU
39
1
Y
1
A
CD
GLU
39
A
CD
GLU
39
1
Y
1
A
OE1
GLU
39
A
OE1
GLU
39
1
Y
1
A
OE2
GLU
39
A
OE2
GLU
39
1
Y
1
A
CB
LYS
78
A
CB
LYS
77
1
Y
1
A
CG
LYS
78
A
CG
LYS
77
1
Y
1
A
CD
LYS
78
A
CD
LYS
77
1
Y
1
A
CE
LYS
78
A
CE
LYS
77
1
Y
1
A
NZ
LYS
78
A
NZ
LYS
77
1
Y
1
A
CG
LYS
79
A
CG
LYS
78
1
Y
1
A
CD
LYS
79
A
CD
LYS
78
1
Y
1
A
CE
LYS
79
A
CE
LYS
78
1
Y
1
A
NZ
LYS
79
A
NZ
LYS
78
1
Y
1
-4.69
0.60
121.00
116.31
A
A
A
CB
CG
CD2
TYR
TYR
TYR
9
9
9
N
1
-12.99
1.90
110.30
97.31
A
A
A
N
CA
CB
THR
THR
THR
17
17
17
N
1
14.24
2.30
110.00
124.24
A
A
A
OG1
CB
CG2
THR
THR
THR
17
17
17
N
1
9.87
1.40
123.60
133.47
A
A
A
CD
NE
CZ
ARG
ARG
ARG
32
32
32
N
1
5.79
0.90
118.30
124.09
A
A
A
CB
CG
OD1
ASP
ASP
ASP
67
67
67
N
1
A
SER
14
-152.14
33.55
1
A
LEU
46
-68.78
82.01
1
A
MET
48
43.60
-129.66
0.142
1.9
1
1.9
96
711
5
0
610
0.018
refinement
PROFFT
PLASMINOGEN KRINGLE 4
CRYSTAL AND MOLECULAR STRUCTURE OF HUMAN PLASMINOGEN KRINGLE 4 REFINED AT 1.9-ANGSTROMS RESOLUTION
1
N
N
2
N
N
3
N
N
disulf
2.067
A
CYS
1
A
SG
CYS
2
1_555
A
CYS
80
A
SG
CYS
79
1_555
disulf
1.983
A
CYS
22
A
SG
CYS
23
1_555
A
CYS
63
A
SG
CYS
62
1_555
disulf
1.970
A
CYS
51
A
SG
CYS
51
1_555
A
CYS
75
A
SG
CYS
74
1_555
HYDROLASE(SERINE PROTEASE)
HYDROLASE(SERINE PROTEASE)
A
THR
29
A
THR
30
1
A
PRO
30
A
PRO
31
3.85
PLMN_HUMAN
UNP
1
1
P00747
MEHKEVVLLLLLFLKSGQGEPLDDYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENR
KSSIIIRMRDVVLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHRPRFSPATHPSEGLEENYCRNPDNDPQ
GPWCYTTDPEKRYDYCDILECEEECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRE
LRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLD
ENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQSYRGTSSTTTTGKKCQS
WSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKKCSGTEASVVAPPPVVLLPDVETPSEED
CMFGNGKGYRGKRATTVTGTPCQDWAAQEPHRHSIFTPETNPRAGLEKNYCRNPDGDVGGPWCYTTNPRKLYDYCDVPQC
AAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAH
QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQ
LPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFV
TWIEGVMRNN
376
454
1PK4
0
80
P00747
A
1
1
79
2
2
2
anti-parallel
anti-parallel
anti-parallel
A
SER
14
A
SER
15
A
THR
16
A
THR
17
A
LYS
20
A
LYS
21
A
CYS
22
A
CYS
23
A
LYS
21
A
LYS
22
A
GLN
23
A
GLN
24
A
PHE
64
A
PHE
63
A
THR
66
A
THR
65
A
PRO
61
A
PRO
60
A
THR
65
A
THR
64
A
ARG
71
A
ARG
70
A
CYS
75
A
CYS
74
BINDING SITE FOR RESIDUE SO4 A 100
Software
7
A
ARG
32
A
ARG
33
7
4_455
A
LYS
35
A
LYS
36
7
1_555
A
LYS
58
A
LYS
58
7
4_555
A
PHE
64
A
PHE
63
7
1_555
A
ARG
71
A
ARG
70
7
1_555
A
HOH
111
C
HOH
7
1_555
A
HOH
137
C
HOH
7
4_555
19
P 21 21 21