0.009030
0.000000
0.000000
0.000000
0.009030
0.000000
0.000000
0.000000
0.009030
0.00000
0.00000
0.00000
Huffman, J.L.
Li, H.
White, R.H.
Tainer, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
110.740
110.740
110.740
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H15 N2 O14 P3
468.142
DEOXYURIDINE-5'-TRIPHOSPHATE
non-polymer
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
N
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
R
C
N
97
N
C
N
98
S
C
N
99
R
C
N
100
N
O
N
101
N
O
N
102
N
C
N
103
N
O
N
104
R
P
N
105
N
O
N
106
N
O
N
107
N
O
N
108
R
P
N
109
N
O
N
110
N
O
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
N
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
O
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
N
C
Y
195
N
C
Y
196
N
N
Y
197
N
C
Y
198
N
C
Y
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
S
C
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
N
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
S
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
O
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
R
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
N
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
Y
193
N
sing
Y
194
N
doub
Y
195
N
doub
N
196
N
sing
Y
197
N
sing
N
198
N
sing
Y
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
Y
301
N
doub
Y
302
N
sing
Y
303
N
sing
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
331
885
896
10.1016/S0022-2836(03)00789-7
12909016
Structural basis for recognition and catalysis by the bifunctional dCTP deaminase and dUTPase from Methanococcus jannaschii
2003
10.2210/pdb1pkj/pdb
pdb_00001pkj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2003-01-18
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.984
1.0
BL11-1
SSRL
0.984
SYNCHROTRON
SSRL BEAMLINE BL11-1
23461.854
Bifunctional deaminase/diphosphatase
3.5.4.13, 3.6.1.23
2
man
polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
468.142
DEOXYURIDINE-5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
255
nat
water
MjDCD-DUT, DCD/DUT
no
no
MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN
YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLEIVAFDKPVILYKNQR
IGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHKKD
MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN
YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLEIVAFDKPVILYKNQR
IGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHKKD
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanocaldococcus
Escherichia
sample
MJ0430
2190
Methanocaldococcus jannaschii
562
Escherichia coli
BL21 (DE3) RIL
plasmid
pET17b
1
2.41
48.98
VAPOR DIFFUSION, HANGING DROP
7
nanopure water, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
1
0
2003-09-23
1
1
2008-04-29
1
2
2011-07-13
1
3
2011-11-16
1
4
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of bifunctional deaminase/diphosphatase
Crystal structure of bifunctional deaminase/diphosphatase complexed with 2'-deoxycytidine-5'-triphosphate
BIOMOLECULE
THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC
UNIT WHICH CONSISTS OF 2 CHAINS. The biological unit
is a hexamer. One hexamer is formed as follows:
Molecule A forms a trimer with the symmetry operators
1/2-z,-x,1/2+y and -y,1/2+z,1/2-x. A second trimer is
formed from the symmetry operators -x,1/2+y, 1/2-z; z,x,y;
and 1/2-y,-z,1/2+x based on the coordinates of molecule
B but does not actually include molecule B. The two
distinct trimers form a hexamer. A second hexamer is
formed as follows: Molecule B forms a trimer with the
symmetry operators -z,1/2+x,1/2-y and 1/2+y,1/2-z,-x.
A second trimer is formed from the symmetry operators
-x,1/2+y,1/2-z; 1/2+z,1/2-x,-y; and y,z,x based on the
coordinates of molecule A but does not actually include
molecule A. The two distinct trimers form a second hexamer.
RCSB
Y
RCSB
2003-06-05
REL
EDO
1,2-ETHANEDIOL
DUT
DEOXYURIDINE-5'-TRIPHOSPHATE
HOH
water
EGL
298
2
EDO
EDO
298
A
UTP
250
3
DUT
DUT
250
B
EGL
299
2
EDO
EDO
299
B
HOH
300
4
HOH
HOH
300
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
311
4
HOH
HOH
311
A
HOH
313
4
HOH
HOH
313
A
HOH
316
4
HOH
HOH
316
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
322
4
HOH
HOH
322
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
326
4
HOH
HOH
326
A
HOH
327
4
HOH
HOH
327
A
HOH
328
4
HOH
HOH
328
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
338
4
HOH
HOH
338
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
346
4
HOH
HOH
346
A
HOH
352
4
HOH
HOH
352
A
HOH
353
4
HOH
HOH
353
A
HOH
354
4
HOH
HOH
354
A
HOH
359
4
HOH
HOH
359
A
HOH
362
4
HOH
HOH
362
A
HOH
363
4
HOH
HOH
363
A
HOH
364
4
HOH
HOH
364
A
HOH
365
4
HOH
HOH
365
A
HOH
368
4
HOH
HOH
368
A
HOH
369
4
HOH
HOH
369
A
HOH
371
4
HOH
HOH
371
A
HOH
372
4
HOH
HOH
372
A
HOH
373
4
HOH
HOH
373
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
380
4
HOH
HOH
380
A
HOH
383
4
HOH
HOH
383
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
391
4
HOH
HOH
391
A
HOH
392
4
HOH
HOH
392
A
HOH
393
4
HOH
HOH
393
A
HOH
394
4
HOH
HOH
394
A
HOH
396
4
HOH
HOH
396
A
HOH
398
4
HOH
HOH
398
A
HOH
399
4
HOH
HOH
399
A
HOH
400
4
HOH
HOH
400
A
HOH
403
4
HOH
HOH
403
A
HOH
404
4
HOH
HOH
404
A
HOH
405
4
HOH
HOH
405
A
HOH
406
4
HOH
HOH
406
A
HOH
411
4
HOH
HOH
411
A
HOH
414
4
HOH
HOH
414
A
HOH
415
4
HOH
HOH
415
A
HOH
417
4
HOH
HOH
417
A
HOH
419
4
HOH
HOH
419
A
HOH
420
4
HOH
HOH
420
A
HOH
424
4
HOH
HOH
424
A
HOH
425
4
HOH
HOH
425
A
HOH
426
4
HOH
HOH
426
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
434
4
HOH
HOH
434
A
HOH
440
4
HOH
HOH
440
A
HOH
445
4
HOH
HOH
445
A
HOH
449
4
HOH
HOH
449
A
HOH
450
4
HOH
HOH
450
A
HOH
451
4
HOH
HOH
451
A
HOH
452
4
HOH
HOH
452
A
HOH
454
4
HOH
HOH
454
A
HOH
455
4
HOH
HOH
455
A
HOH
456
4
HOH
HOH
456
A
HOH
458
4
HOH
HOH
458
A
HOH
459
4
HOH
HOH
459
A
HOH
460
4
HOH
HOH
460
A
HOH
462
4
HOH
HOH
462
A
HOH
464
4
HOH
HOH
464
A
HOH
465
4
HOH
HOH
465
A
HOH
466
4
HOH
HOH
466
A
HOH
468
4
HOH
HOH
468
A
HOH
469
4
HOH
HOH
469
A
HOH
470
4
HOH
HOH
470
A
HOH
471
4
HOH
HOH
471
A
HOH
472
4
HOH
HOH
472
A
HOH
474
4
HOH
HOH
474
A
HOH
479
4
HOH
HOH
479
A
HOH
485
4
HOH
HOH
485
A
HOH
486
4
HOH
HOH
486
A
HOH
487
4
HOH
HOH
487
A
HOH
489
4
HOH
HOH
489
A
HOH
493
4
HOH
HOH
493
A
HOH
494
4
HOH
HOH
494
A
HOH
495
4
HOH
HOH
495
A
HOH
497
4
HOH
HOH
497
A
HOH
498
4
HOH
HOH
498
A
HOH
499
4
HOH
HOH
499
A
HOH
500
4
HOH
HOH
500
A
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
507
4
HOH
HOH
507
A
HOH
508
4
HOH
HOH
508
A
HOH
510
4
HOH
HOH
510
A
HOH
518
4
HOH
HOH
518
A
HOH
519
4
HOH
HOH
519
A
HOH
520
4
HOH
HOH
520
A
HOH
525
4
HOH
HOH
525
A
HOH
526
4
HOH
HOH
526
A
HOH
527
4
HOH
HOH
527
A
HOH
530
4
HOH
HOH
530
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
533
4
HOH
HOH
533
A
HOH
534
4
HOH
HOH
534
A
HOH
535
4
HOH
HOH
535
A
HOH
539
4
HOH
HOH
539
A
HOH
540
4
HOH
HOH
540
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
545
4
HOH
HOH
545
A
HOH
547
4
HOH
HOH
547
A
HOH
303
4
HOH
HOH
303
B
HOH
304
4
HOH
HOH
304
B
HOH
305
4
HOH
HOH
305
B
HOH
310
4
HOH
HOH
310
B
HOH
312
4
HOH
HOH
312
B
HOH
314
4
HOH
HOH
314
B
HOH
315
4
HOH
HOH
315
B
HOH
317
4
HOH
HOH
317
B
HOH
318
4
HOH
HOH
318
B
HOH
321
4
HOH
HOH
321
B
HOH
323
4
HOH
HOH
323
B
HOH
329
4
HOH
HOH
329
B
HOH
330
4
HOH
HOH
330
B
HOH
336
4
HOH
HOH
336
B
HOH
337
4
HOH
HOH
337
B
HOH
339
4
HOH
HOH
339
B
HOH
343
4
HOH
HOH
343
B
HOH
344
4
HOH
HOH
344
B
HOH
345
4
HOH
HOH
345
B
HOH
347
4
HOH
HOH
347
B
HOH
348
4
HOH
HOH
348
B
HOH
349
4
HOH
HOH
349
B
HOH
350
4
HOH
HOH
350
B
HOH
351
4
HOH
HOH
351
B
HOH
355
4
HOH
HOH
355
B
HOH
356
4
HOH
HOH
356
B
HOH
357
4
HOH
HOH
357
B
HOH
358
4
HOH
HOH
358
B
HOH
360
4
HOH
HOH
360
B
HOH
361
4
HOH
HOH
361
B
HOH
366
4
HOH
HOH
366
B
HOH
367
4
HOH
HOH
367
B
HOH
370
4
HOH
HOH
370
B
HOH
374
4
HOH
HOH
374
B
HOH
375
4
HOH
HOH
375
B
HOH
376
4
HOH
HOH
376
B
HOH
377
4
HOH
HOH
377
B
HOH
381
4
HOH
HOH
381
B
HOH
382
4
HOH
HOH
382
B
HOH
386
4
HOH
HOH
386
B
HOH
387
4
HOH
HOH
387
B
HOH
388
4
HOH
HOH
388
B
HOH
395
4
HOH
HOH
395
B
HOH
397
4
HOH
HOH
397
B
HOH
401
4
HOH
HOH
401
B
HOH
402
4
HOH
HOH
402
B
HOH
407
4
HOH
HOH
407
B
HOH
408
4
HOH
HOH
408
B
HOH
409
4
HOH
HOH
409
B
HOH
410
4
HOH
HOH
410
B
HOH
412
4
HOH
HOH
412
B
HOH
413
4
HOH
HOH
413
B
HOH
416
4
HOH
HOH
416
B
HOH
418
4
HOH
HOH
418
B
HOH
421
4
HOH
HOH
421
B
HOH
422
4
HOH
HOH
422
B
HOH
423
4
HOH
HOH
423
B
HOH
427
4
HOH
HOH
427
B
HOH
431
4
HOH
HOH
431
B
HOH
432
4
HOH
HOH
432
B
HOH
433
4
HOH
HOH
433
B
HOH
435
4
HOH
HOH
435
B
HOH
436
4
HOH
HOH
436
B
HOH
437
4
HOH
HOH
437
B
HOH
438
4
HOH
HOH
438
B
HOH
439
4
HOH
HOH
439
B
HOH
441
4
HOH
HOH
441
B
HOH
442
4
HOH
HOH
442
B
HOH
443
4
HOH
HOH
443
B
HOH
444
4
HOH
HOH
444
B
HOH
446
4
HOH
HOH
446
B
HOH
447
4
HOH
HOH
447
B
HOH
448
4
HOH
HOH
448
B
HOH
453
4
HOH
HOH
453
B
HOH
457
4
HOH
HOH
457
B
HOH
461
4
HOH
HOH
461
B
HOH
463
4
HOH
HOH
463
B
HOH
467
4
HOH
HOH
467
B
HOH
473
4
HOH
HOH
473
B
HOH
475
4
HOH
HOH
475
B
HOH
476
4
HOH
HOH
476
B
HOH
477
4
HOH
HOH
477
B
HOH
478
4
HOH
HOH
478
B
HOH
480
4
HOH
HOH
480
B
HOH
481
4
HOH
HOH
481
B
HOH
482
4
HOH
HOH
482
B
HOH
483
4
HOH
HOH
483
B
HOH
484
4
HOH
HOH
484
B
HOH
488
4
HOH
HOH
488
B
HOH
490
4
HOH
HOH
490
B
HOH
491
4
HOH
HOH
491
B
HOH
492
4
HOH
HOH
492
B
HOH
496
4
HOH
HOH
496
B
HOH
505
4
HOH
HOH
505
B
HOH
506
4
HOH
HOH
506
B
HOH
509
4
HOH
HOH
509
B
HOH
511
4
HOH
HOH
511
B
HOH
512
4
HOH
HOH
512
B
HOH
513
4
HOH
HOH
513
B
HOH
514
4
HOH
HOH
514
B
HOH
515
4
HOH
HOH
515
B
HOH
516
4
HOH
HOH
516
B
HOH
517
4
HOH
HOH
517
B
HOH
521
4
HOH
HOH
521
B
HOH
522
4
HOH
HOH
522
B
HOH
523
4
HOH
HOH
523
B
HOH
524
4
HOH
HOH
524
B
HOH
528
4
HOH
HOH
528
B
HOH
529
4
HOH
HOH
529
B
HOH
536
4
HOH
HOH
536
B
HOH
537
4
HOH
HOH
537
B
HOH
538
4
HOH
HOH
538
B
HOH
541
4
HOH
HOH
541
B
HOH
544
4
HOH
HOH
544
B
HOH
546
4
HOH
HOH
546
B
HOH
548
4
HOH
HOH
548
B
HOH
549
4
HOH
HOH
549
B
HOH
550
4
HOH
HOH
550
B
HOH
551
4
HOH
HOH
551
B
HOH
554
4
HOH
HOH
554
B
HOH
555
4
HOH
HOH
555
B
HOH
556
4
HOH
HOH
556
B
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
LEU
3
n
3
LEU
3
A
SER
4
n
4
SER
4
A
ASP
5
n
5
ASP
5
A
LYS
6
n
6
LYS
6
A
ASP
7
n
7
ASP
7
A
ILE
8
n
8
ILE
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
TYR
11
n
11
TYR
11
A
VAL
12
n
12
VAL
12
A
THR
13
n
13
THR
13
A
SER
14
n
14
SER
14
A
LYS
15
n
15
LYS
15
A
ARG
16
n
16
ARG
16
A
ILE
17
n
17
ILE
17
A
ILE
18
n
18
ILE
18
A
ILE
19
n
19
ILE
19
A
LYS
20
n
20
LYS
20
A
PRO
21
n
21
PRO
21
A
PHE
22
n
22
PHE
22
A
ASN
23
n
23
ASN
23
A
LYS
24
n
24
LYS
24
A
ASP
25
n
25
ASP
25
A
PHE
26
n
26
PHE
26
A
VAL
27
n
27
VAL
27
A
GLY
28
n
28
GLY
28
A
PRO
29
n
29
PRO
29
A
CYS
30
n
30
CYS
30
A
SER
31
n
31
SER
31
A
TYR
32
n
32
TYR
32
A
ASP
33
n
33
ASP
33
A
VAL
34
n
34
VAL
34
A
THR
35
n
35
THR
35
A
LEU
36
n
36
LEU
36
A
GLY
37
n
37
GLY
37
A
ASP
38
n
38
ASP
38
A
GLU
39
n
39
GLU
39
A
PHE
40
n
40
PHE
40
A
ILE
41
n
41
ILE
41
A
ILE
42
n
42
ILE
42
A
TYR
43
n
43
TYR
43
A
ASP
44
n
44
ASP
44
A
ASP
45
n
45
ASP
45
A
GLU
46
n
46
GLU
46
A
VAL
47
n
47
VAL
47
A
TYR
48
n
48
TYR
48
A
ASP
49
n
49
ASP
49
A
LEU
50
n
50
LEU
50
A
SER
51
n
51
SER
51
A
LYS
52
n
52
LYS
52
A
GLU
53
n
53
GLU
53
A
LEU
54
n
54
LEU
54
A
ASN
55
n
55
ASN
55
A
TYR
56
n
56
TYR
56
A
LYS
57
n
57
LYS
57
A
ARG
58
n
58
ARG
58
A
ILE
59
n
59
ILE
59
A
LYS
60
n
60
LYS
60
A
ILE
61
n
61
ILE
61
A
LYS
62
n
62
LYS
62
A
ASN
63
n
63
ASN
63
A
SER
64
n
64
SER
64
A
ILE
65
n
65
ILE
65
A
LEU
66
n
66
LEU
66
A
VAL
67
n
67
VAL
67
A
CYS
68
n
68
CYS
68
A
PRO
69
n
69
PRO
69
A
LEU
70
n
70
LEU
70
A
ASN
71
n
71
ASN
71
A
TYR
72
n
72
TYR
72
A
ASN
73
n
73
ASN
73
A
LEU
74
n
74
LEU
74
A
THR
75
n
75
THR
75
A
GLU
76
n
76
GLU
76
A
GLU
77
n
77
GLU
77
A
LYS
78
n
78
LYS
78
A
ILE
79
n
79
ILE
79
A
ASN
80
n
80
ASN
80
A
TYR
81
n
81
TYR
81
A
PHE
82
n
82
PHE
82
A
LYS
83
n
83
LYS
83
A
GLU
84
n
84
GLU
84
A
LYS
85
n
85
LYS
85
A
TYR
86
n
86
TYR
86
A
ASN
87
n
87
ASN
87
A
VAL
88
n
88
VAL
88
A
ASP
89
n
89
ASP
89
A
TYR
90
n
90
TYR
90
A
VAL
91
n
91
VAL
91
A
VAL
92
n
92
VAL
92
A
GLU
93
n
93
GLU
93
A
GLY
94
n
94
GLY
94
A
GLY
95
n
95
GLY
95
A
VAL
96
n
96
VAL
96
A
LEU
97
n
97
LEU
97
A
GLY
98
n
98
GLY
98
A
THR
99
n
99
THR
99
A
THR
100
n
100
THR
100
A
ASN
101
n
101
ASN
101
A
GLU
102
n
102
GLU
102
A
TYR
103
n
103
TYR
103
A
ILE
104
n
104
ILE
104
A
GLU
105
n
105
GLU
105
A
LEU
106
n
106
LEU
106
A
PRO
107
n
107
PRO
107
A
ASN
108
n
108
ASN
108
A
ASP
109
n
109
ASP
109
A
ILE
110
n
110
ILE
110
A
SER
111
n
111
SER
111
A
ALA
112
n
112
ALA
112
A
GLN
113
n
113
GLN
113
A
TYR
114
n
114
TYR
114
A
GLN
115
n
115
GLN
115
A
GLY
116
n
116
GLY
116
A
ARG
117
n
117
ARG
117
A
SER
118
n
118
SER
118
A
SER
119
n
119
SER
119
A
LEU
120
n
120
LEU
120
A
GLY
121
n
121
GLY
121
A
ARG
122
n
122
ARG
122
A
VAL
123
n
123
VAL
123
A
PHE
124
n
124
PHE
124
A
LEU
125
n
125
LEU
125
A
THR
126
n
126
THR
126
A
SER
127
n
127
SER
127
A
HIS
128
n
128
HIS
128
A
GLN
129
n
129
GLN
129
A
THR
130
n
130
THR
130
A
ALA
131
n
131
ALA
131
A
GLY
132
n
132
GLY
132
A
TRP
133
n
133
TRP
133
A
ILE
134
n
134
ILE
134
A
ASP
135
n
135
ASP
135
A
ALA
136
n
136
ALA
136
A
GLY
137
n
137
GLY
137
A
PHE
138
n
138
PHE
138
A
LYS
139
n
139
LYS
139
A
GLY
140
n
140
GLY
140
A
LYS
141
n
141
LYS
141
A
ILE
142
n
142
ILE
142
A
THR
143
n
143
THR
143
A
LEU
144
n
144
LEU
144
A
GLU
145
n
145
GLU
145
A
ILE
146
n
146
ILE
146
A
VAL
147
n
147
VAL
147
A
ALA
148
n
148
ALA
148
A
PHE
149
n
149
PHE
149
A
ASP
150
n
150
ASP
150
A
LYS
151
n
151
LYS
151
A
PRO
152
n
152
PRO
152
A
VAL
153
n
153
VAL
153
A
ILE
154
n
154
ILE
154
A
LEU
155
n
155
LEU
155
A
TYR
156
n
156
TYR
156
A
LYS
157
n
157
LYS
157
A
ASN
158
n
158
ASN
158
A
GLN
159
n
159
GLN
159
A
ARG
160
n
160
ARG
160
A
ILE
161
n
161
ILE
161
A
GLY
162
n
162
GLY
162
A
GLN
163
n
163
GLN
163
A
LEU
164
n
164
LEU
164
A
ILE
165
n
165
ILE
165
A
PHE
166
n
166
PHE
166
A
SER
167
n
167
SER
167
A
LYS
168
n
168
LYS
168
A
LEU
169
n
169
LEU
169
A
LEU
170
n
170
LEU
170
A
SER
171
n
171
SER
171
A
PRO
172
n
172
PRO
172
A
ALA
173
n
173
ALA
173
A
ASP
174
n
174
ASP
174
A
VAL
175
n
175
VAL
175
A
GLY
176
n
176
GLY
176
A
TYR
177
n
177
TYR
177
A
SER
178
n
178
SER
178
A
GLU
179
n
179
GLU
179
A
ARG
180
n
180
ARG
180
A
n
181
181
A
n
182
182
A
n
183
183
A
n
184
184
A
n
185
185
A
n
186
186
A
n
187
187
A
n
188
188
A
n
189
189
A
n
190
190
A
n
191
191
A
n
192
192
A
n
193
193
A
n
194
194
A
n
195
195
A
n
196
196
A
n
197
197
A
n
198
198
A
n
199
199
A
n
200
200
A
n
201
201
A
n
202
202
A
n
203
203
A
n
204
204
A
MET
1
n
1
MET
1
B
ILE
2
n
2
ILE
2
B
LEU
3
n
3
LEU
3
B
SER
4
n
4
SER
4
B
ASP
5
n
5
ASP
5
B
LYS
6
n
6
LYS
6
B
ASP
7
n
7
ASP
7
B
ILE
8
n
8
ILE
8
B
ILE
9
n
9
ILE
9
B
ASP
10
n
10
ASP
10
B
TYR
11
n
11
TYR
11
B
VAL
12
n
12
VAL
12
B
THR
13
n
13
THR
13
B
SER
14
n
14
SER
14
B
LYS
15
n
15
LYS
15
B
ARG
16
n
16
ARG
16
B
ILE
17
n
17
ILE
17
B
ILE
18
n
18
ILE
18
B
ILE
19
n
19
ILE
19
B
LYS
20
n
20
LYS
20
B
PRO
21
n
21
PRO
21
B
PHE
22
n
22
PHE
22
B
ASN
23
n
23
ASN
23
B
LYS
24
n
24
LYS
24
B
ASP
25
n
25
ASP
25
B
PHE
26
n
26
PHE
26
B
VAL
27
n
27
VAL
27
B
GLY
28
n
28
GLY
28
B
PRO
29
n
29
PRO
29
B
CYS
30
n
30
CYS
30
B
SER
31
n
31
SER
31
B
TYR
32
n
32
TYR
32
B
ASP
33
n
33
ASP
33
B
VAL
34
n
34
VAL
34
B
THR
35
n
35
THR
35
B
LEU
36
n
36
LEU
36
B
GLY
37
n
37
GLY
37
B
ASP
38
n
38
ASP
38
B
GLU
39
n
39
GLU
39
B
PHE
40
n
40
PHE
40
B
ILE
41
n
41
ILE
41
B
ILE
42
n
42
ILE
42
B
TYR
43
n
43
TYR
43
B
ASP
44
n
44
ASP
44
B
ASP
45
n
45
ASP
45
B
GLU
46
n
46
GLU
46
B
VAL
47
n
47
VAL
47
B
TYR
48
n
48
TYR
48
B
ASP
49
n
49
ASP
49
B
LEU
50
n
50
LEU
50
B
SER
51
n
51
SER
51
B
LYS
52
n
52
LYS
52
B
GLU
53
n
53
GLU
53
B
LEU
54
n
54
LEU
54
B
ASN
55
n
55
ASN
55
B
TYR
56
n
56
TYR
56
B
LYS
57
n
57
LYS
57
B
ARG
58
n
58
ARG
58
B
ILE
59
n
59
ILE
59
B
LYS
60
n
60
LYS
60
B
ILE
61
n
61
ILE
61
B
LYS
62
n
62
LYS
62
B
ASN
63
n
63
ASN
63
B
SER
64
n
64
SER
64
B
ILE
65
n
65
ILE
65
B
LEU
66
n
66
LEU
66
B
VAL
67
n
67
VAL
67
B
CYS
68
n
68
CYS
68
B
PRO
69
n
69
PRO
69
B
LEU
70
n
70
LEU
70
B
ASN
71
n
71
ASN
71
B
TYR
72
n
72
TYR
72
B
ASN
73
n
73
ASN
73
B
LEU
74
n
74
LEU
74
B
THR
75
n
75
THR
75
B
GLU
76
n
76
GLU
76
B
GLU
77
n
77
GLU
77
B
LYS
78
n
78
LYS
78
B
ILE
79
n
79
ILE
79
B
ASN
80
n
80
ASN
80
B
TYR
81
n
81
TYR
81
B
PHE
82
n
82
PHE
82
B
LYS
83
n
83
LYS
83
B
GLU
84
n
84
GLU
84
B
LYS
85
n
85
LYS
85
B
TYR
86
n
86
TYR
86
B
ASN
87
n
87
ASN
87
B
VAL
88
n
88
VAL
88
B
ASP
89
n
89
ASP
89
B
TYR
90
n
90
TYR
90
B
VAL
91
n
91
VAL
91
B
VAL
92
n
92
VAL
92
B
GLU
93
n
93
GLU
93
B
GLY
94
n
94
GLY
94
B
GLY
95
n
95
GLY
95
B
VAL
96
n
96
VAL
96
B
LEU
97
n
97
LEU
97
B
GLY
98
n
98
GLY
98
B
THR
99
n
99
THR
99
B
THR
100
n
100
THR
100
B
ASN
101
n
101
ASN
101
B
GLU
102
n
102
GLU
102
B
TYR
103
n
103
TYR
103
B
ILE
104
n
104
ILE
104
B
GLU
105
n
105
GLU
105
B
LEU
106
n
106
LEU
106
B
PRO
107
n
107
PRO
107
B
ASN
108
n
108
ASN
108
B
ASP
109
n
109
ASP
109
B
ILE
110
n
110
ILE
110
B
SER
111
n
111
SER
111
B
ALA
112
n
112
ALA
112
B
GLN
113
n
113
GLN
113
B
TYR
114
n
114
TYR
114
B
GLN
115
n
115
GLN
115
B
GLY
116
n
116
GLY
116
B
ARG
117
n
117
ARG
117
B
SER
118
n
118
SER
118
B
SER
119
n
119
SER
119
B
LEU
120
n
120
LEU
120
B
GLY
121
n
121
GLY
121
B
ARG
122
n
122
ARG
122
B
VAL
123
n
123
VAL
123
B
PHE
124
n
124
PHE
124
B
LEU
125
n
125
LEU
125
B
THR
126
n
126
THR
126
B
SER
127
n
127
SER
127
B
HIS
128
n
128
HIS
128
B
GLN
129
n
129
GLN
129
B
THR
130
n
130
THR
130
B
ALA
131
n
131
ALA
131
B
GLY
132
n
132
GLY
132
B
TRP
133
n
133
TRP
133
B
ILE
134
n
134
ILE
134
B
ASP
135
n
135
ASP
135
B
ALA
136
n
136
ALA
136
B
GLY
137
n
137
GLY
137
B
PHE
138
n
138
PHE
138
B
LYS
139
n
139
LYS
139
B
GLY
140
n
140
GLY
140
B
LYS
141
n
141
LYS
141
B
ILE
142
n
142
ILE
142
B
THR
143
n
143
THR
143
B
LEU
144
n
144
LEU
144
B
GLU
145
n
145
GLU
145
B
ILE
146
n
146
ILE
146
B
VAL
147
n
147
VAL
147
B
ALA
148
n
148
ALA
148
B
PHE
149
n
149
PHE
149
B
ASP
150
n
150
ASP
150
B
LYS
151
n
151
LYS
151
B
PRO
152
n
152
PRO
152
B
VAL
153
n
153
VAL
153
B
ILE
154
n
154
ILE
154
B
LEU
155
n
155
LEU
155
B
TYR
156
n
156
TYR
156
B
LYS
157
n
157
LYS
157
B
ASN
158
n
158
ASN
158
B
GLN
159
n
159
GLN
159
B
ARG
160
n
160
ARG
160
B
ILE
161
n
161
ILE
161
B
GLY
162
n
162
GLY
162
B
GLN
163
n
163
GLN
163
B
LEU
164
n
164
LEU
164
B
ILE
165
n
165
ILE
165
B
PHE
166
n
166
PHE
166
B
SER
167
n
167
SER
167
B
LYS
168
n
168
LYS
168
B
LEU
169
n
169
LEU
169
B
LEU
170
n
170
LEU
170
B
SER
171
n
171
SER
171
B
PRO
172
n
172
PRO
172
B
ALA
173
n
173
ALA
173
B
ASP
174
n
174
ASP
174
B
VAL
175
n
175
VAL
175
B
n
176
176
B
n
177
177
B
n
178
178
B
n
179
179
B
n
180
180
B
n
181
181
B
n
182
182
B
n
183
183
B
n
184
184
B
n
185
185
B
n
186
186
B
n
187
187
B
n
188
188
B
n
189
189
B
n
190
190
B
n
191
191
B
n
192
192
B
n
193
193
B
n
194
194
B
n
195
195
B
n
196
196
B
n
197
197
B
n
198
198
B
n
199
199
B
n
200
200
B
n
201
201
B
n
202
202
B
n
203
203
B
n
204
204
B
author_and_software_defined_assembly
PISA
6
hexameric
software_defined_assembly
PQS
3
trimeric
26690
-119
40310
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
8_656
-z+1,x+1/2,-y+3/2
crystal symmetry operation
110.7400000000
55.3700000000
166.1100000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
11_466
y-1/2,-z+3/2,-x+1
crystal symmetry operation
-55.3700000000
166.1100000000
110.7400000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y+1/2,-z+1/2
crystal symmetry operation
110.7400000000
55.3700000000
55.3700000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
6_566
z+1/2,-x+3/2,-y+1
crystal symmetry operation
55.3700000000
166.1100000000
110.7400000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
9_565
y,z+1,x
crystal symmetry operation
0.0000000000
110.7400000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
7_564
-z+1/2,-x+1,y-1/2
crystal symmetry operation
55.3700000000
110.7400000000
-55.3700000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
10_655
-y+1,z+1/2,-x+1/2
crystal symmetry operation
110.7400000000
55.3700000000
55.3700000000
A
N
LYS
20
A
N
LYS
20
A
O
TYR
103
A
O
TYR
103
A
N
VAL
96
A
N
VAL
96
A
O
ILE
146
A
O
ILE
146
A
O
VAL
147
A
O
VAL
147
A
N
THR
126
A
N
THR
126
A
N
VAL
34
A
N
VAL
34
A
O
GLY
162
A
O
GLY
162
A
O
SER
167
A
O
SER
167
A
N
SER
111
A
N
SER
111
A
N
ALA
112
A
N
ALA
112
A
O
ILE
134
A
O
ILE
134
A
N
PHE
40
A
N
PHE
40
A
O
ILE
59
A
O
ILE
59
A
O
VAL
92
A
O
VAL
92
A
N
CYS
68
A
N
CYS
68
A
N
ILE
65
A
N
ILE
65
A
O
LEU
155
A
O
LEU
155
A
N
SER
178
A
N
SER
178
B
O
LYS
60
B
O
LYS
60
B
O
ILE
59
B
O
ILE
59
B
N
PHE
40
B
N
PHE
40
B
N
LYS
20
B
N
LYS
20
B
O
TYR
103
B
O
TYR
103
B
N
ILE
104
B
N
ILE
104
B
O
GLY
140
B
O
GLY
140
B
O
VAL
147
B
O
VAL
147
B
N
THR
126
B
N
THR
126
B
N
TYR
32
B
N
TYR
32
B
O
LEU
164
B
O
LEU
164
B
O
SER
167
B
O
SER
167
B
N
SER
111
B
N
SER
111
B
N
ALA
112
B
N
ALA
112
B
O
ILE
134
B
O
ILE
134
B
O
VAL
92
B
O
VAL
92
B
N
CYS
68
B
N
CYS
68
B
N
VAL
67
B
N
VAL
67
B
O
VAL
153
B
O
VAL
153
1
A
HOH
301
F
HOH
1
A
HOH
371
F
HOH
1
A
HOH
426
F
HOH
1
B
HOH
314
G
HOH
1
B
HOH
357
G
HOH
1
B
HOH
490
G
HOH
1
B
HOH
538
G
HOH
1
B
HOH
555
G
HOH
1
A
LYS
181
A
LYS
181
1
Y
1
A
THR
182
A
THR
182
1
Y
1
A
SER
183
A
SER
183
1
Y
1
A
LYS
184
A
LYS
184
1
Y
1
A
TYR
185
A
TYR
185
1
Y
1
A
ALA
186
A
ALA
186
1
Y
1
A
TYR
187
A
TYR
187
1
Y
1
A
GLN
188
A
GLN
188
1
Y
1
A
LYS
189
A
LYS
189
1
Y
1
A
SER
190
A
SER
190
1
Y
1
A
VAL
191
A
VAL
191
1
Y
1
A
MET
192
A
MET
192
1
Y
1
A
PRO
193
A
PRO
193
1
Y
1
A
SER
194
A
SER
194
1
Y
1
A
LEU
195
A
LEU
195
1
Y
1
A
ILE
196
A
ILE
196
1
Y
1
A
HIS
197
A
HIS
197
1
Y
1
A
LEU
198
A
LEU
198
1
Y
1
A
ASP
199
A
ASP
199
1
Y
1
A
ASN
200
A
ASN
200
1
Y
1
A
HIS
201
A
HIS
201
1
Y
1
A
LYS
202
A
LYS
202
1
Y
1
A
LYS
203
A
LYS
203
1
Y
1
A
ASP
204
A
ASP
204
1
Y
1
B
GLY
176
B
GLY
176
1
Y
1
B
TYR
177
B
TYR
177
1
Y
1
B
SER
178
B
SER
178
1
Y
1
B
GLU
179
B
GLU
179
1
Y
1
B
ARG
180
B
ARG
180
1
Y
1
B
LYS
181
B
LYS
181
1
Y
1
B
THR
182
B
THR
182
1
Y
1
B
SER
183
B
SER
183
1
Y
1
B
LYS
184
B
LYS
184
1
Y
1
B
TYR
185
B
TYR
185
1
Y
1
B
ALA
186
B
ALA
186
1
Y
1
B
TYR
187
B
TYR
187
1
Y
1
B
GLN
188
B
GLN
188
1
Y
1
B
LYS
189
B
LYS
189
1
Y
1
B
SER
190
B
SER
190
1
Y
1
B
VAL
191
B
VAL
191
1
Y
1
B
MET
192
B
MET
192
1
Y
1
B
PRO
193
B
PRO
193
1
Y
1
B
SER
194
B
SER
194
1
Y
1
B
LEU
195
B
LEU
195
1
Y
1
B
ILE
196
B
ILE
196
1
Y
1
B
HIS
197
B
HIS
197
1
Y
1
B
LEU
198
B
LEU
198
1
Y
1
B
ASP
199
B
ASP
199
1
Y
1
B
ASN
200
B
ASN
200
1
Y
1
B
HIS
201
B
HIS
201
1
Y
1
B
LYS
202
B
LYS
202
1
Y
1
B
LYS
203
B
LYS
203
1
Y
1
B
ASP
204
B
ASP
204
1
Y
1
A
CYS
30
-150.82
38.71
1
A
ASN
63
-145.44
-44.84
1
A
ASN
73
60.32
75.97
1
A
ASP
150
-132.66
-72.44
1
B
CYS
30
-152.62
44.15
1
B
ASN
63
-128.48
-52.57
1
B
ASN
73
60.43
69.33
1
B
ASP
150
-130.31
-62.46
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
EXTRA_PAR.TXT
EXTRA_TOP.TXT
22.2
0.00
0.00
0.00
0.00
0.00
0.00
0.233
0.007
0.193
0.193
2.10
20.14
1245
25853
4.8
97.0
RANDOM
233669.82
233669.82
0
1
RESTRAINED
THROUGHOUT
0.0
FOURIER SYNTHESIS
Engh & Huber
FLAT MODEL
43.1298
0.337983
0.28
0.22
5
0.16
0.12
2.10
20.14
255
3161
36
0
2870
0.006
1.2
25.1
0.69
0.233
0.016
0.207
2.23
207
3931
6
5.0
94.5
5.7
2.10
30.0
1PKJ
26643
0
0
0.084
1
26.3
5.4
99.7
2.10
2.18
7.3
0.339
1
99.2
refinement
CNS
1.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Structural basis for recognition and catalysis by the bifunctional dCTP deaminase and dUTPase from Methanococcus jannaschii
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
4
N
N
4
N
N
A
SER
4
A
SER
4
HELX_P
A
SER
14
A
SER
14
1
1
11
A
ASN
23
A
ASN
23
HELX_P
A
VAL
27
A
VAL
27
5
2
5
A
THR
75
A
THR
75
HELX_P
A
ASN
87
A
ASN
87
1
3
13
A
ARG
117
A
ARG
117
HELX_P
A
ARG
122
A
ARG
122
1
4
6
B
SER
4
B
SER
4
HELX_P
B
SER
14
B
SER
14
1
5
11
B
ASN
23
B
ASN
23
HELX_P
B
VAL
27
B
VAL
27
5
6
5
B
THR
75
B
THR
75
HELX_P
B
ASN
87
B
ASN
87
1
7
13
B
ARG
117
B
ARG
117
HELX_P
B
ARG
122
B
ARG
122
1
8
6
HYDROLASE
DCTP DEAMINASE, DUTPASE, DCD-DUT, MJ0430, DCTP, DUTP, HYDROLASE
A
LYS
20
A
LYS
20
1
A
PRO
21
A
PRO
21
-1.25
B
LYS
20
B
LYS
20
1
B
PRO
21
B
PRO
21
0.17
DCD_METJA
UNP
1
1
Q57872
MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN
YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLEIVAFDKPVILYKNQR
IGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHKKD
1
204
1PKJ
1
204
Q57872
A
1
1
204
1
204
1PKJ
1
204
Q57872
B
1
1
204
4
4
2
3
3
4
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
ILE
18
A
ILE
18
A
LYS
20
A
LYS
20
A
VAL
96
A
VAL
96
A
GLU
105
A
GLU
105
A
LYS
139
A
LYS
139
A
ALA
148
A
ALA
148
A
LEU
125
A
LEU
125
A
THR
126
A
THR
126
A
TYR
32
A
TYR
32
A
THR
35
A
THR
35
A
ARG
160
A
ARG
160
A
LYS
168
A
LYS
168
A
ILE
110
A
ILE
110
A
GLY
116
A
GLY
116
A
TRP
133
A
TRP
133
A
ILE
134
A
ILE
134
A
GLU
39
A
GLU
39
A
TYR
43
A
TYR
43
A
TYR
56
A
TYR
56
A
LYS
60
A
LYS
60
A
TYR
90
A
TYR
90
A
GLU
93
A
GLU
93
A
SER
64
A
SER
64
A
CYS
68
A
CYS
68
A
VAL
153
A
VAL
153
A
TYR
156
A
TYR
156
A
TYR
177
A
TYR
177
A
ARG
180
A
ARG
180
B
TYR
56
B
TYR
56
B
ILE
61
B
ILE
61
B
GLU
39
B
GLU
39
B
TYR
43
B
TYR
43
B
ILE
18
B
ILE
18
B
LYS
20
B
LYS
20
B
VAL
96
B
VAL
96
B
GLU
105
B
GLU
105
B
LYS
139
B
LYS
139
B
ALA
148
B
ALA
148
B
LEU
125
B
LEU
125
B
THR
126
B
THR
126
B
TYR
32
B
TYR
32
B
THR
35
B
THR
35
B
ARG
160
B
ARG
160
B
LYS
168
B
LYS
168
B
ILE
110
B
ILE
110
B
GLY
116
B
GLY
116
B
TRP
133
B
TRP
133
B
ILE
134
B
ILE
134
B
TYR
90
B
TYR
90
B
GLU
93
B
GLU
93
B
SER
64
B
SER
64
B
CYS
68
B
CYS
68
B
VAL
153
B
VAL
153
B
TYR
156
B
TYR
156
BINDING SITE FOR RESIDUE DUT B 250
B
DUT
250
Software
16
BINDING SITE FOR RESIDUE EDO A 298
A
EDO
298
Software
6
BINDING SITE FOR RESIDUE EDO B 299
B
EDO
299
Software
6
B
ASP
33
B
ASP
33
16
8_656
B
ARG
117
B
ARG
117
16
8_656
B
SER
118
B
SER
118
16
8_656
B
SER
119
B
SER
119
16
8_656
B
ARG
122
B
ARG
122
16
8_656
B
HIS
128
B
HIS
128
16
1_555
B
ILE
134
B
ILE
134
16
1_555
B
ASP
135
B
ASP
135
16
1_555
B
PHE
138
B
PHE
138
16
1_555
B
ILE
142
B
ILE
142
16
1_555
B
THR
143
B
THR
143
16
1_555
B
GLU
145
B
GLU
145
16
1_555
B
ARG
160
B
ARG
160
16
8_656
B
GLN
163
B
GLN
163
16
8_656
B
HOH
506
G
HOH
16
8_656
B
HOH
511
G
HOH
16
8_656
A
ASP
174
A
ASP
174
6
1_555
A
TYR
177
A
TYR
177
6
1_555
A
SER
178
A
SER
178
6
1_555
A
HOH
466
F
HOH
6
1_555
B
LYS
60
B
LYS
60
6
1_555
B
LYS
62
B
LYS
62
6
1_555
B
ARG
16
B
ARG
16
6
1_555
B
GLU
105
B
GLU
105
6
1_555
B
LEU
106
B
LEU
106
6
1_555
B
PRO
107
B
PRO
107
6
1_555
B
HOH
370
G
HOH
6
1_555
B
HOH
480
G
HOH
6
1_555
198
P 21 3