0.008543 0.000000 0.000000 0.000000 0.008543 0.000000 0.000000 0.000000 0.008543 0.00000 0.00000 0.00000 Vainer, R. Adir, N. Baasov, T. Belakhov, V. Rabkin, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 117.055 117.055 117.055 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C3 H6 F O6 P 188.048 3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N C N 90 N O N 91 R C N 92 N O N 93 N P N 94 N O N 95 N O N 96 N O N 97 N C N 98 N F N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N N N 106 S C N 107 N C N 108 N O N 109 N C N 110 N C N 111 N C N 112 N O N 113 N N N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N N N 126 S C N 127 N C N 128 N O N 129 N C N 130 N C N 131 N C N 132 N O N 133 N O N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 N C N 146 N C N 147 N O N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N N N 155 S C N 156 N C N 157 N O N 158 N C Y 159 N C Y 160 N N Y 161 N C Y 162 N C Y 163 N N N 164 N O N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N O N 176 N H N 177 N H N 178 N N N 179 S C N 180 N C N 181 N O N 182 S C N 183 N C N 184 N C N 185 N C N 186 N O N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N N N 201 S C N 202 N C N 203 N O N 204 N C N 205 N C N 206 N C N 207 N C N 208 N O N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 N C N 227 N C N 228 N C N 229 N C N 230 N N N 231 N O N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C N 252 N C N 253 N S N 254 N C N 255 N O N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C Y 277 N C N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N O N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 R C N 326 N O N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C N 349 N O N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C N 367 N C N 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing Y 156 N sing Y 157 N doub Y 158 N doub N 159 N sing Y 160 N sing N 161 N sing Y 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing Y 264 N doub Y 265 N sing Y 266 N sing N 267 N sing Y 268 N doub N 269 N sing Y 270 N doub N 271 N sing Y 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N doub N 338 N sing Y 339 N doub N 340 N sing Y 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing To be Published 0353 Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP 10.2210/pdb1pl9/pdb pdb_00001pl9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-02-10 MACSCIENCE triangular mono chromator SINGLE WAVELENGTH M x-ray 1 0.934 1.0 ID14-1 ESRF 0.934 SYNCHROTRON ESRF BEAMLINE ID14-1 30870.676 2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 1 man polymer 188.048 3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID 1 syn non-polymer 18.015 water 22 nat water Phospho-2-dehydro-3-deoxyoctonate aldolase, 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase, KDO-8-phosphate synthetase, KDO 8-P synthase no no MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample KDSA 562 Escherichia coli 562 Escherichia coli 1 2.16 43.15 VAPOR DIFFUSION, HANGING DROP 7.4 EG 4000, Glycrol, Tris-HCl , pH 7.4 , VAPOR DIFFUSION, HANGING DROP, temperature 294 K 294 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2004-07-13 1 1 2008-04-29 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal structures of kdo8p synthase in its binary complex with substrate phosphoenol pyruvate Structure of e. Coli kdo8p Structure of e. Coli kdo8p synthase CRYSTAL STRUCTURE OF KDO8P SYNTHASE IN ITS BINARY COMPLEX WITH SUBSTRATE ANALOG E-FPEP CRYSTAL STRUCTURE OF KDO8P SYNTHASE IN ITS BINARY COMPLEX WITH SUBSTRATE ANALOG 1-DEOXY-A5P Crystal structure of KDO8P synthase in its binary complex with substrate PEP RCSB Y RCSB 2003-06-08 REL REL FPE 3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID HOH water 1D9E 1D9E (a) PDB experimental model FPE 300 2 FPE FPE 300 A TIP 1 3 HOH HOH 301 A TIP 2 3 HOH HOH 302 A TIP 3 3 HOH HOH 303 A TIP 4 3 HOH HOH 304 A TIP 5 3 HOH HOH 305 A TIP 6 3 HOH HOH 306 A TIP 7 3 HOH HOH 307 A TIP 8 3 HOH HOH 308 A TIP 9 3 HOH HOH 309 A TIP 11 3 HOH HOH 310 A TIP 12 3 HOH HOH 311 A TIP 13 3 HOH HOH 312 A TIP 14 3 HOH HOH 313 A TIP 15 3 HOH HOH 314 A TIP 16 3 HOH HOH 315 A TIP 17 3 HOH HOH 316 A TIP 18 3 HOH HOH 317 A TIP 19 3 HOH HOH 318 A TIP 20 3 HOH HOH 319 A TIP 21 3 HOH HOH 320 A TIP 22 3 HOH HOH 321 A TIP 23 3 HOH HOH 322 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A GLN 3 n 3 GLN 3 A LYS 4 n 4 LYS 4 A VAL 5 n 5 VAL 5 A VAL 6 n 6 VAL 6 A SER 7 n 7 SER 7 A ILE 8 n 8 ILE 8 A GLY 9 n 9 GLY 9 A ASP 10 n 10 ASP 10 A ILE 11 n 11 ILE 11 A ASN 12 n 12 ASN 12 A VAL 13 n 13 VAL 13 A ALA 14 n 14 ALA 14 A ASN 15 n 15 ASN 15 A ASP 16 n 16 ASP 16 A LEU 17 n 17 LEU 17 A PRO 18 n 18 PRO 18 A PHE 19 n 19 PHE 19 A VAL 20 n 20 VAL 20 A LEU 21 n 21 LEU 21 A PHE 22 n 22 PHE 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A MET 25 n 25 MET 25 A ASN 26 n 26 ASN 26 A VAL 27 n 27 VAL 27 A LEU 28 n 28 LEU 28 A GLU 29 n 29 GLU 29 A SER 30 n 30 SER 30 A ARG 31 n 31 ARG 31 A ASP 32 n 32 ASP 32 A LEU 33 n 33 LEU 33 A ALA 34 n 34 ALA 34 A MET 35 n 35 MET 35 A ARG 36 n 36 ARG 36 A ILE 37 n 37 ILE 37 A CYS 38 n 38 CYS 38 A GLU 39 n 39 GLU 39 A HIS 40 n 40 HIS 40 A TYR 41 n 41 TYR 41 A VAL 42 n 42 VAL 42 A THR 43 n 43 THR 43 A VAL 44 n 44 VAL 44 A THR 45 n 45 THR 45 A GLN 46 n 46 GLN 46 A LYS 47 n 47 LYS 47 A LEU 48 n 48 LEU 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A PRO 51 n 51 PRO 51 A TYR 52 n 52 TYR 52 A VAL 53 n 53 VAL 53 A PHE 54 n 54 PHE 54 A LYS 55 n 55 LYS 55 A ALA 56 n 56 ALA 56 A SER 57 n 57 SER 57 A PHE 58 n 58 PHE 58 A ASP 59 n 59 ASP 59 A LYS 60 n 60 LYS 60 A ALA 61 n 61 ALA 61 A ASN 62 n 62 ASN 62 A ARG 63 n 63 ARG 63 A SER 64 n 64 SER 64 A SER 65 n 65 SER 65 A ILE 66 n 66 ILE 66 A HIS 67 n 67 HIS 67 A SER 68 n 68 SER 68 A TYR 69 n 69 TYR 69 A ARG 70 n 70 ARG 70 A GLY 71 n 71 GLY 71 A PRO 72 n 72 PRO 72 A GLY 73 n 73 GLY 73 A LEU 74 n 74 LEU 74 A GLU 75 n 75 GLU 75 A GLU 76 n 76 GLU 76 A GLY 77 n 77 GLY 77 A MET 78 n 78 MET 78 A LYS 79 n 79 LYS 79 A ILE 80 n 80 ILE 80 A PHE 81 n 81 PHE 81 A GLN 82 n 82 GLN 82 A GLU 83 n 83 GLU 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A GLN 86 n 86 GLN 86 A THR 87 n 87 THR 87 A PHE 88 n 88 PHE 88 A GLY 89 n 89 GLY 89 A VAL 90 n 90 VAL 90 A LYS 91 n 91 LYS 91 A ILE 92 n 92 ILE 92 A ILE 93 n 93 ILE 93 A THR 94 n 94 THR 94 A ASP 95 n 95 ASP 95 A VAL 96 n 96 VAL 96 A HIS 97 n 97 HIS 97 A GLU 98 n 98 GLU 98 A PRO 99 n 99 PRO 99 A SER 100 n 100 SER 100 A GLN 101 n 101 GLN 101 A ALA 102 n 102 ALA 102 A GLN 103 n 103 GLN 103 A PRO 104 n 104 PRO 104 A VAL 105 n 105 VAL 105 A ALA 106 n 106 ALA 106 A ASP 107 n 107 ASP 107 A VAL 108 n 108 VAL 108 A VAL 109 n 109 VAL 109 A ASP 110 n 110 ASP 110 A VAL 111 n 111 VAL 111 A ILE 112 n 112 ILE 112 A GLN 113 n 113 GLN 113 A LEU 114 n 114 LEU 114 A PRO 115 n 115 PRO 115 A ALA 116 n 116 ALA 116 A PHE 117 n 117 PHE 117 A LEU 118 n 118 LEU 118 A ALA 119 n 119 ALA 119 A ARG 120 n 120 ARG 120 A GLN 121 n 121 GLN 121 A THR 122 n 122 THR 122 A ASP 123 n 123 ASP 123 A LEU 124 n 124 LEU 124 A VAL 125 n 125 VAL 125 A GLU 126 n 126 GLU 126 A ALA 127 n 127 ALA 127 A MET 128 n 128 MET 128 A ALA 129 n 129 ALA 129 A LYS 130 n 130 LYS 130 A THR 131 n 131 THR 131 A GLY 132 n 132 GLY 132 A ALA 133 n 133 ALA 133 A VAL 134 n 134 VAL 134 A ILE 135 n 135 ILE 135 A ASN 136 n 136 ASN 136 A VAL 137 n 137 VAL 137 A LYS 138 n 138 LYS 138 A LYS 139 n 139 LYS 139 A PRO 140 n 140 PRO 140 A GLN 141 n 141 GLN 141 A PHE 142 n 142 PHE 142 A VAL 143 n 143 VAL 143 A SER 144 n 144 SER 144 A PRO 145 n 145 PRO 145 A GLY 146 n 146 GLY 146 A GLN 147 n 147 GLN 147 A MET 148 n 148 MET 148 A GLY 149 n 149 GLY 149 A ASN 150 n 150 ASN 150 A ILE 151 n 151 ILE 151 A VAL 152 n 152 VAL 152 A ASP 153 n 153 ASP 153 A LYS 154 n 154 LYS 154 A PHE 155 n 155 PHE 155 A LYS 156 n 156 LYS 156 A GLU 157 n 157 GLU 157 A GLY 158 n 158 GLY 158 A GLY 159 n 159 GLY 159 A ASN 160 n 160 ASN 160 A GLU 161 n 161 GLU 161 A LYS 162 n 162 LYS 162 A VAL 163 n 163 VAL 163 A ILE 164 n 164 ILE 164 A LEU 165 n 165 LEU 165 A CYS 166 n 166 CYS 166 A ASP 167 n 167 ASP 167 A ARG 168 n 168 ARG 168 A GLY 169 n 169 GLY 169 A ALA 170 n 170 ALA 170 A ASN 171 n 171 ASN 171 A PHE 172 n 172 PHE 172 A GLY 173 n 173 GLY 173 A TYR 174 n 174 TYR 174 A ASP 175 n 175 ASP 175 A ASN 176 n 176 ASN 176 A LEU 177 n 177 LEU 177 A VAL 178 n 178 VAL 178 A VAL 179 n 179 VAL 179 A ASP 180 n 180 ASP 180 A MET 181 n 181 MET 181 A LEU 182 n 182 LEU 182 A GLY 183 n 183 GLY 183 A PHE 184 n 184 PHE 184 A SER 185 n 185 SER 185 A ILE 186 n 186 ILE 186 A MET 187 n 187 MET 187 A LYS 188 n 188 LYS 188 A LYS 189 n 189 LYS 189 A VAL 190 n 190 VAL 190 A SER 191 n 191 SER 191 A GLY 192 n 192 GLY 192 A ASN 193 n 193 ASN 193 A SER 194 n 194 SER 194 A PRO 195 n 195 PRO 195 A VAL 196 n 196 VAL 196 A ILE 197 n 197 ILE 197 A PHE 198 n 198 PHE 198 A ASP 199 n 199 ASP 199 A VAL 200 n 200 VAL 200 A THR 201 n 201 THR 201 A HIS 202 n 202 HIS 202 A ALA 203 n 203 ALA 203 A LEU 204 n 204 LEU 204 A GLN 205 n 205 GLN 205 A n 206 206 A n 207 207 A n 208 208 A n 209 209 A n 210 210 A n 211 211 A n 212 212 A n 213 213 A n 214 214 A n 215 215 A n 216 216 A n 217 217 A ARG 218 n 218 ARG 218 A ALA 219 n 219 ALA 219 A GLN 220 n 220 GLN 220 A VAL 221 n 221 VAL 221 A ALA 222 n 222 ALA 222 A GLU 223 n 223 GLU 223 A LEU 224 n 224 LEU 224 A ALA 225 n 225 ALA 225 A ARG 226 n 226 ARG 226 A ALA 227 n 227 ALA 227 A GLY 228 n 228 GLY 228 A MET 229 n 229 MET 229 A ALA 230 n 230 ALA 230 A VAL 231 n 231 VAL 231 A GLY 232 n 232 GLY 232 A LEU 233 n 233 LEU 233 A ALA 234 n 234 ALA 234 A GLY 235 n 235 GLY 235 A LEU 236 n 236 LEU 236 A PHE 237 n 237 PHE 237 A ILE 238 n 238 ILE 238 A GLU 239 n 239 GLU 239 A ALA 240 n 240 ALA 240 A HIS 241 n 241 HIS 241 A PRO 242 n 242 PRO 242 A ASP 243 n 243 ASP 243 A PRO 244 n 244 PRO 244 A GLU 245 n 245 GLU 245 A HIS 246 n 246 HIS 246 A ALA 247 n 247 ALA 247 A LYS 248 n 248 LYS 248 A CYS 249 n 249 CYS 249 A ASP 250 n 250 ASP 250 A GLY 251 n 251 GLY 251 A PRO 252 n 252 PRO 252 A SER 253 n 253 SER 253 A ALA 254 n 254 ALA 254 A LEU 255 n 255 LEU 255 A PRO 256 n 256 PRO 256 A LEU 257 n 257 LEU 257 A ALA 258 n 258 ALA 258 A LYS 259 n 259 LYS 259 A LEU 260 n 260 LEU 260 A GLU 261 n 261 GLU 261 A PRO 262 n 262 PRO 262 A PHE 263 n 263 PHE 263 A LEU 264 n 264 LEU 264 A LYS 265 n 265 LYS 265 A GLN 266 n 266 GLN 266 A MET 267 n 267 MET 267 A LYS 268 n 268 LYS 268 A ALA 269 n 269 ALA 269 A ILE 270 n 270 ILE 270 A ASP 271 n 271 ASP 271 A ASP 272 n 272 ASP 272 A LEU 273 n 273 LEU 273 A VAL 274 n 274 VAL 274 A LYS 275 n 275 LYS 275 A GLY 276 n 276 GLY 276 A PHE 277 n 277 PHE 277 A GLU 278 n 278 GLU 278 A GLU 279 n 279 GLU 279 A LEU 280 n 280 LEU 280 A ASP 281 n 281 ASP 281 A THR 282 n 282 THR 282 A SER 283 n 283 SER 283 A LYS 284 n 284 LYS 284 A author_and_software_defined_assembly PISA,PQS 4 tetrameric 15550 -67 37520 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_645 -x+1,-y-1,z crystal symmetry operation 117.0550000000 -117.0550000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_657 -x+1,y,-z+2 crystal symmetry operation 117.0550000000 0.0000000000 234.1100000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_547 x,-y-1,-z+2 crystal symmetry operation 0.0000000000 -117.0550000000 234.1100000000 A N VAL 20 A N VAL 20 A O LEU 236 A O LEU 236 A O GLY 235 A O GLY 235 A N PHE 198 A N PHE 198 A O ILE 197 A O ILE 197 A N LEU 165 A N LEU 165 A O CYS 166 A O CYS 166 A N LYS 139 A N LYS 139 A O ASN 136 A O ASN 136 A N LEU 114 A N LEU 114 A O GLN 113 A O GLN 113 A N THR 94 A N THR 94 A O ILE 93 A O ILE 93 A N PHE 54 A N PHE 54 A N ALA 170 A N ALA 170 A O VAL 178 A O VAL 178 A N HIS 241 A N HIS 241 A O LEU 255 A O LEU 255 1 A CYS 206 A CYS 206 1 Y 1 A ARG 207 A ARG 207 1 Y 1 A ASP 208 A ASP 208 1 Y 1 A PRO 209 A PRO 209 1 Y 1 A PHE 210 A PHE 210 1 Y 1 A GLY 211 A GLY 211 1 Y 1 A ALA 212 A ALA 212 1 Y 1 A ALA 213 A ALA 213 1 Y 1 A SER 214 A SER 214 1 Y 1 A GLY 215 A GLY 215 1 Y 1 A GLY 216 A GLY 216 1 Y 1 A ARG 217 A ARG 217 1 Y 1 A C2 FPE 300 WRONG HAND 1 -19.56 2.20 117.20 97.64 A A A CA C N HIS HIS ALA 202 202 203 Y 1 10.20 1.60 122.70 132.90 A A A O C N HIS HIS ALA 202 202 203 Y 1 35.22 2.50 121.70 156.92 A A A C N CA HIS ALA ALA 202 203 203 Y 1 A VAL 6 -119.52 53.86 1 A PHE 22 -105.01 58.10 1 A ASN 26 -83.54 -75.96 1 A TYR 41 -51.35 -73.91 1 A THR 45 -62.09 -72.50 1 A PRO 72 -45.79 9.55 1 A PHE 88 -140.94 -6.10 1 A ALA 102 -54.22 -77.00 1 A PRO 104 -55.44 -74.61 1 A PHE 117 -45.72 -13.63 1 A ALA 119 -45.27 -13.47 1 A ASN 176 -176.40 142.15 1 A ALA 230 -77.21 22.33 1 A LYS 248 -42.19 90.51 1 A CYS 249 -101.08 -96.05 1 A ASP 250 178.30 147.43 1 A LEU 260 -47.95 -73.18 1 A ALA 269 -57.17 1.01 1 A ILE 270 -130.36 -52.31 1 A ASP 272 -98.01 -69.59 1 A GLU 279 -22.61 122.18 0.3271 0.2325 0.36 0.28 2.9 20 603 6029 5584 92.6 RANDOM 1 THROUGHOUT 4 2 MOLECULAR REPLACEMENT 1D9E (a) Engh & Huber 2.9 20 22 2115 11 0 2082 0.008853 1.71772 23.88748 1.38640 0.3926 0.3193 3.0 52 444 2.8 20 1PL9 6712 6309 1 1 0.102 0.98 1 15 4.4 96.2 0.11 2.8 2.89 0.14 1 4.2 96.7 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP 1 N N 2 N N 3 N N THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN. The biological assembly is a tetramer generated from the monomer in the asymmetric unit by the operations: x,y,z; -x,-y,z; -x,y,-z; x,y,-z; A SER 30 A SER 30 HELX_P A GLY 49 A GLY 49 1 1 20 A GLY 73 A GLY 73 HELX_P A GLY 89 A GLY 89 1 2 17 A GLU 98 A GLU 98 HELX_P A SER 100 A SER 100 5 3 3 A GLN 101 A GLN 101 HELX_P A VAL 109 A VAL 109 1 4 9 A PRO 115 A PRO 115 HELX_P A ALA 119 A ALA 119 5 5 5 A GLN 121 A GLN 121 HELX_P A GLY 132 A GLY 132 1 6 12 A SER 144 A SER 144 HELX_P A GLN 147 A GLN 147 5 7 4 A MET 148 A MET 148 HELX_P A GLY 158 A GLY 158 1 8 11 A LEU 182 A LEU 182 HELX_P A SER 191 A SER 191 1 9 10 A VAL 200 A VAL 200 HELX_P A LEU 204 A LEU 204 5 10 5 A ALA 219 A ALA 219 HELX_P A ALA 230 A ALA 230 1 11 12 A ASP 243 A ASP 243 HELX_P A LYS 248 A LYS 248 1 12 6 A LYS 259 A LYS 259 HELX_P A ASP 272 A ASP 272 1 13 14 TRANSFERASE BETA-ALPHA-BARRELS, LYASE, LIPOPOLYSACCHARIDE, FLOURINATED ANALOG, TRANSFERASE KDSA_ECOLI UNP 1 1 P0A715 MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK 1 284 1PL9 1 284 P0A715 A 1 1 284 8 2 2 parallel parallel parallel parallel parallel parallel parallel anti-parallel parallel A VAL 20 A VAL 20 A LEU 21 A LEU 21 A GLY 235 A GLY 235 A LEU 236 A LEU 236 A VAL 196 A VAL 196 A PHE 198 A PHE 198 A VAL 163 A VAL 163 A ASP 167 A ASP 167 A VAL 134 A VAL 134 A LYS 139 A LYS 139 A VAL 111 A VAL 111 A LEU 114 A LEU 114 A LYS 91 A LYS 91 A ASP 95 A ASP 95 A VAL 53 A VAL 53 A LYS 55 A LYS 55 A ALA 170 A ALA 170 A ASN 171 A ASN 171 A LEU 177 A LEU 177 A VAL 178 A VAL 178 A ALA 240 A ALA 240 A HIS 241 A HIS 241 A LEU 255 A LEU 255 A PRO 256 A PRO 256 BINDING SITE FOR RESIDUE FPE A 300 A FPE 300 Software 5 A ASN 26 A ASN 26 5 1_555 A LYS 55 A LYS 55 5 1_555 A LYS 138 A LYS 138 5 1_555 A HIS 202 A HIS 202 5 1_555 A GLU 239 A GLU 239 5 1_555 197 I 2 3