0.012636 0.000000 0.000000 0.000000 0.010964 0.000000 0.000000 0.000000 0.007072 0.00000 0.00000 0.00000 CIS PROLINE - PRO L 8 LYS L 44 - PRO L 45 OMEGA = 212.33 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION CIS PROLINE - PRO L 100 CIS PROLINE - PRO L 146 CIS PROLINE - PRO H 151 CIS PROLINE - PRO H 153 CIS PROLINE - PRO H 193 Evans, S.V. Sigurskjold, B.W. Jennings, H.J. Brisson, J.-R. Tse, W.C. To, R. Altman, E. Frosch, M. Weisgerber, C. Kratzin, H. Klebert, S. Vaesen, M. Bitter-Suermann, D. Rose, D.R. Young, N.M. Bundle, D.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 79.140 91.210 141.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 34 6737 6744 10.1021/bi00020a019 7538787 Evidence for the extended helical nature of polysaccharide epitopes. The 2.8 A resolution structure and thermodynamics of ligand binding of an antigen binding fragment specific for alpha-(2-->8)-polysialic acid. 1995 US Biochemistry BICHAW 0033 0006-2960 31 4996 Helical Epitope of the Group B Meningococcal Alpha(2->8)-Linked Sialic Acid Polysaccharide 1992 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 AREA DETECTOR 1991-04-24 SDMS x-ray 1 1.5418 1.0 1.5418 23737.297 IGG2A=KAPPA= FAB FRAGMENT THAT BINDS POLYSIALIC ACID 1 nat polymer 23022.732 IGG2A=KAPPA= FAB FRAGMENT THAT BINDS POLYSIALIC ACID 1 nat polymer 18.015 water 34 nat water no no DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLYWYLQKPGQSPKPLIYRVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCFQGTHVPYTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLYWYLQKPGQSPKPLIYRVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCFQGTHVPYTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN L polypeptide(L) no no QIQLQQSGPELVRPGASVKISCKASGYTFTDYYIHWVKQRPGEGLEWIGWIYPGSGNTKYNEKFKGKATLTVDTSSSTAY MQLSSLTSEDSAVYFCARGGKFAMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE QIQLQQSGPELVRPGASVKISCKASGYTFTDYYIHWVKQRPGEGLEWIGWIYPGSGNTKYNEKFKGKATLTVDTSSSTAY MQLSSLTSEDSAVYFCARGGKFAMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample 10090 Mus musculus house mouse Mus sample 10090 Mus musculus 1 2.73 54.90 repository Initial release Version format compliance Version format compliance Database references 1 0 1996-04-03 1 1 2008-03-24 1 2 2011-07-13 1 3 2012-02-22 Y 1995-04-24 REL HOH water HOH 3 3 HOH HOH 216 L HOH 5 3 HOH HOH 217 L HOH 8 3 HOH HOH 218 L HOH 9 3 HOH HOH 219 L HOH 13 3 HOH HOH 220 L HOH 18 3 HOH HOH 221 L HOH 20 3 HOH HOH 222 L HOH 21 3 HOH HOH 223 L HOH 23 3 HOH HOH 224 L HOH 25 3 HOH HOH 225 L HOH 29 3 HOH HOH 226 L HOH 33 3 HOH HOH 227 L HOH 1 3 HOH HOH 216 H HOH 2 3 HOH HOH 217 H HOH 4 3 HOH HOH 218 H HOH 6 3 HOH HOH 219 H HOH 7 3 HOH HOH 220 H HOH 10 3 HOH HOH 221 H HOH 11 3 HOH HOH 222 H HOH 12 3 HOH HOH 223 H HOH 14 3 HOH HOH 224 H HOH 15 3 HOH HOH 225 H HOH 16 3 HOH HOH 226 H HOH 17 3 HOH HOH 227 H HOH 19 3 HOH HOH 228 H HOH 22 3 HOH HOH 229 H HOH 24 3 HOH HOH 230 H HOH 26 3 HOH HOH 231 H HOH 27 3 HOH HOH 232 H HOH 28 3 HOH HOH 233 H HOH 30 3 HOH HOH 234 H HOH 31 3 HOH HOH 235 H HOH 32 3 HOH HOH 236 H HOH 34 3 HOH HOH 237 H ASP 1 n 1 ASP 1 L VAL 2 n 2 VAL 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L THR 7 n 7 THR 7 L PRO 8 n 8 PRO 8 L LEU 9 n 9 LEU 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L PRO 12 n 12 PRO 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L GLN 18 n 18 GLN 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 28 n 28 SER 28 L LEU 29 n 29 LEU 29 L VAL 30 n 30 VAL 30 L HIS 31 n 31 HIS 31 L SER 32 n 32 SER 32 L ASN 33 n 33 ASN 33 L GLY 34 n 34 GLY 34 L ASN 35 n 35 ASN 35 L THR 36 n 36 THR 36 L TYR 37 n 37 TYR 37 L LEU 38 n 38 LEU 38 L TYR 39 n 39 TYR 39 L TRP 40 n 40 TRP 40 L TYR 41 n 41 TYR 41 L LEU 42 n 42 LEU 42 L GLN 43 n 43 GLN 43 L LYS 44 n 44 LYS 44 L PRO 45 n 45 PRO 45 L GLY 46 n 46 GLY 46 L GLN 47 n 47 GLN 47 L SER 48 n 48 SER 48 L PRO 49 n 49 PRO 49 L LYS 50 n 50 LYS 50 L PRO 51 n 51 PRO 51 L LEU 52 n 52 LEU 52 L ILE 53 n 53 ILE 53 L TYR 54 n 54 TYR 54 L ARG 55 n 55 ARG 55 L VAL 56 n 56 VAL 56 L SER 57 n 57 SER 57 L ASN 58 n 58 ASN 58 L ARG 59 n 59 ARG 59 L PHE 60 n 60 PHE 60 L SER 61 n 61 SER 61 L GLY 62 n 62 GLY 62 L VAL 63 n 63 VAL 63 L PRO 64 n 64 PRO 64 L ASP 65 n 65 ASP 65 L ARG 66 n 66 ARG 66 L PHE 67 n 67 PHE 67 L SER 68 n 68 SER 68 L GLY 69 n 69 GLY 69 L SER 70 n 70 SER 70 L GLY 71 n 71 GLY 71 L SER 72 n 72 SER 72 L GLY 73 n 73 GLY 73 L THR 74 n 74 THR 74 L ASP 75 n 75 ASP 75 L PHE 76 n 76 PHE 76 L THR 77 n 77 THR 77 L LEU 78 n 78 LEU 78 L LYS 79 n 79 LYS 79 L ILE 80 n 80 ILE 80 L SER 81 n 81 SER 81 L ARG 82 n 82 ARG 82 L VAL 83 n 83 VAL 83 L GLU 84 n 84 GLU 84 L ALA 85 n 85 ALA 85 L GLU 86 n 86 GLU 86 L ASP 87 n 87 ASP 87 L LEU 88 n 88 LEU 88 L GLY 89 n 89 GLY 89 L VAL 90 n 90 VAL 90 L TYR 91 n 91 TYR 91 L PHE 92 n 92 PHE 92 L CYS 93 n 93 CYS 93 L PHE 94 n 94 PHE 94 L GLN 95 n 95 GLN 95 L GLY 96 n 96 GLY 96 L THR 97 n 97 THR 97 L HIS 98 n 98 HIS 98 L VAL 99 n 99 VAL 99 L PRO 100 n 100 PRO 100 L TYR 101 n 101 TYR 101 L THR 102 n 102 THR 102 L PHE 103 n 103 PHE 103 L GLY 104 n 104 GLY 104 L GLY 105 n 105 GLY 105 L GLY 106 n 106 GLY 106 L THR 107 n 107 THR 107 L ARG 108 n 108 ARG 108 L LEU 109 n 109 LEU 109 L GLU 110 n 110 GLU 110 L ILE 111 n 111 ILE 111 L LYS 112 n 112 LYS 112 L ARG 113 n 113 ARG 113 L ALA 114 n 114 ALA 114 L ASP 115 n 115 ASP 115 L ALA 116 n 116 ALA 116 L ALA 117 n 117 ALA 117 L PRO 118 n 118 PRO 118 L THR 119 n 119 THR 119 L VAL 120 n 120 VAL 120 L SER 121 n 121 SER 121 L ILE 122 n 122 ILE 122 L PHE 123 n 123 PHE 123 L PRO 124 n 124 PRO 124 L PRO 125 n 125 PRO 125 L SER 126 n 126 SER 126 L SER 127 n 127 SER 127 L GLU 128 n 128 GLU 128 L GLN 129 n 129 GLN 129 L LEU 130 n 130 LEU 130 L THR 131 n 131 THR 131 L SER 132 n 132 SER 132 L GLY 133 n 133 GLY 133 L GLY 134 n 134 GLY 134 L ALA 135 n 135 ALA 135 L SER 136 n 136 SER 136 L VAL 137 n 137 VAL 137 L VAL 138 n 138 VAL 138 L CYS 139 n 139 CYS 139 L PHE 140 n 140 PHE 140 L LEU 141 n 141 LEU 141 L ASN 142 n 142 ASN 142 L ASN 143 n 143 ASN 143 L PHE 144 n 144 PHE 144 L TYR 145 n 145 TYR 145 L PRO 146 n 146 PRO 146 L LYS 147 n 147 LYS 147 L ASP 148 n 148 ASP 148 L ILE 149 n 149 ILE 149 L ASN 150 n 150 ASN 150 L VAL 151 n 151 VAL 151 L LYS 152 n 152 LYS 152 L TRP 153 n 153 TRP 153 L LYS 154 n 154 LYS 154 L ILE 155 n 155 ILE 155 L ASP 156 n 156 ASP 156 L GLY 157 n 157 GLY 157 L SER 158 n 158 SER 158 L GLU 159 n 159 GLU 159 L ARG 160 n 160 ARG 160 L GLN 161 n 161 GLN 161 L ASN 162 n 162 ASN 162 L GLY 163 n 163 GLY 163 L VAL 164 n 164 VAL 164 L LEU 165 n 165 LEU 165 L ASN 166 n 166 ASN 166 L SER 167 n 167 SER 167 L TRP 168 n 168 TRP 168 L THR 169 n 169 THR 169 L ASP 170 n 170 ASP 170 L GLN 171 n 171 GLN 171 L ASP 172 n 172 ASP 172 L SER 173 n 173 SER 173 L LYS 174 n 174 LYS 174 L ASP 175 n 175 ASP 175 L SER 176 n 176 SER 176 L THR 177 n 177 THR 177 L TYR 178 n 178 TYR 178 L SER 179 n 179 SER 179 L MET 180 n 180 MET 180 L SER 181 n 181 SER 181 L SER 182 n 182 SER 182 L THR 183 n 183 THR 183 L LEU 184 n 184 LEU 184 L THR 185 n 185 THR 185 L LEU 186 n 186 LEU 186 L THR 187 n 187 THR 187 L LYS 188 n 188 LYS 188 L ASP 189 n 189 ASP 189 L GLU 190 n 190 GLU 190 L TYR 191 n 191 TYR 191 L GLU 192 n 192 GLU 192 L ARG 193 n 193 ARG 193 L HIS 194 n 194 HIS 194 L ASN 195 n 195 ASN 195 L SER 196 n 196 SER 196 L TYR 197 n 197 TYR 197 L THR 198 n 198 THR 198 L CYS 199 n 199 CYS 199 L GLU 200 n 200 GLU 200 L ALA 201 n 201 ALA 201 L THR 202 n 202 THR 202 L HIS 203 n 203 HIS 203 L LYS 204 n 204 LYS 204 L THR 205 n 205 THR 205 L SER 206 n 206 SER 206 L THR 207 n 207 THR 207 L SER 208 n 208 SER 208 L PRO 209 n 209 PRO 209 L ILE 210 n 210 ILE 210 L VAL 211 n 211 VAL 211 L LYS 212 n 212 LYS 212 L SER 213 n 213 SER 213 L PHE 214 n 214 PHE 214 L ASN 215 n 215 ASN 215 L GLN 1 n 1 GLN 1 H ILE 2 n 2 ILE 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLN 6 n 6 GLN 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H GLU 10 n 10 GLU 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H ARG 13 n 13 ARG 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H ALA 16 n 16 ALA 16 H SER 17 n 17 SER 17 H VAL 18 n 18 VAL 18 H LYS 19 n 19 LYS 19 H ILE 20 n 20 ILE 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H LYS 23 n 23 LYS 23 H ALA 24 n 24 ALA 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H TYR 27 n 27 TYR 27 H THR 28 n 28 THR 28 H PHE 29 n 29 PHE 29 H THR 30 n 30 THR 30 H ASP 31 n 31 ASP 31 H TYR 32 n 32 TYR 32 H TYR 33 n 33 TYR 33 H ILE 34 n 34 ILE 34 H HIS 35 n 35 HIS 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H LYS 38 n 38 LYS 38 H GLN 39 n 39 GLN 39 H ARG 40 n 40 ARG 40 H PRO 41 n 41 PRO 41 H GLY 42 n 42 GLY 42 H GLU 43 n 43 GLU 43 H GLY 44 n 44 GLY 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H ILE 48 n 48 ILE 48 H GLY 49 n 49 GLY 49 H TRP 50 n 50 TRP 50 H ILE 51 n 51 ILE 51 H TYR 52 n 52 TYR 52 H PRO 53 n 53 PRO 53 H GLY 54 n 54 GLY 54 H SER 55 n 55 SER 55 H GLY 56 n 56 GLY 56 H ASN 57 n 57 ASN 57 H THR 58 n 58 THR 58 H LYS 59 n 59 LYS 59 H TYR 60 n 60 TYR 60 H ASN 61 n 61 ASN 61 H GLU 62 n 62 GLU 62 H LYS 63 n 63 LYS 63 H PHE 64 n 64 PHE 64 H LYS 65 n 65 LYS 65 H GLY 66 n 66 GLY 66 H LYS 67 n 67 LYS 67 H ALA 68 n 68 ALA 68 H THR 69 n 69 THR 69 H LEU 70 n 70 LEU 70 H THR 71 n 71 THR 71 H VAL 72 n 72 VAL 72 H ASP 73 n 73 ASP 73 H THR 74 n 74 THR 74 H SER 75 n 75 SER 75 H SER 76 n 76 SER 76 H SER 77 n 77 SER 77 H THR 78 n 78 THR 78 H ALA 79 n 79 ALA 79 H TYR 80 n 80 TYR 80 H MET 81 n 81 MET 81 H GLN 82 n 82 GLN 82 H LEU 83 n 83 LEU 83 H SER 84 n 84 SER 84 H SER 85 n 85 SER 85 H LEU 86 n 86 LEU 86 H THR 87 n 87 THR 87 H SER 88 n 88 SER 88 H GLU 89 n 89 GLU 89 H ASP 90 n 90 ASP 90 H SER 91 n 91 SER 91 H ALA 92 n 92 ALA 92 H VAL 93 n 93 VAL 93 H TYR 94 n 94 TYR 94 H PHE 95 n 95 PHE 95 H CYS 96 n 96 CYS 96 H ALA 97 n 97 ALA 97 H ARG 98 n 98 ARG 98 H GLY 99 n 99 GLY 99 H GLY 100 n 100 GLY 100 H LYS 101 n 101 LYS 101 H PHE 102 n 102 PHE 102 H ALA 103 n 103 ALA 103 H MET 104 n 104 MET 104 H ASP 105 n 105 ASP 105 H TYR 106 n 106 TYR 106 H TRP 107 n 107 TRP 107 H GLY 108 n 108 GLY 108 H GLN 109 n 109 GLN 109 H GLY 110 n 110 GLY 110 H THR 111 n 111 THR 111 H SER 112 n 112 SER 112 H VAL 113 n 113 VAL 113 H THR 114 n 114 THR 114 H VAL 115 n 115 VAL 115 H SER 116 n 116 SER 116 H SER 117 n 117 SER 117 H ALA 118 n 118 ALA 118 H LYS 119 n 119 LYS 119 H THR 120 n 120 THR 120 H THR 121 n 121 THR 121 H ALA 122 n 122 ALA 122 H PRO 123 n 123 PRO 123 H SER 124 n 124 SER 124 H VAL 125 n 125 VAL 125 H TYR 126 n 126 TYR 126 H PRO 127 n 127 PRO 127 H LEU 128 n 128 LEU 128 H ALA 129 n 129 ALA 129 H PRO 130 n 130 PRO 130 H VAL 131 n 131 VAL 131 H CYS 132 n 132 CYS 132 H GLY 133 n 133 GLY 133 H ASP 134 n 134 ASP 134 H THR 135 n 135 THR 135 H THR 136 n 136 THR 136 H GLY 137 n 137 GLY 137 H SER 138 n 138 SER 138 H SER 139 n 139 SER 139 H VAL 140 n 140 VAL 140 H THR 141 n 141 THR 141 H LEU 142 n 142 LEU 142 H GLY 143 n 143 GLY 143 H CYS 144 n 144 CYS 144 H LEU 145 n 145 LEU 145 H VAL 146 n 146 VAL 146 H LYS 147 n 147 LYS 147 H GLY 148 n 148 GLY 148 H TYR 149 n 149 TYR 149 H PHE 150 n 150 PHE 150 H PRO 151 n 151 PRO 151 H GLU 152 n 152 GLU 152 H PRO 153 n 153 PRO 153 H VAL 154 n 154 VAL 154 H THR 155 n 155 THR 155 H LEU 156 n 156 LEU 156 H THR 157 n 157 THR 157 H TRP 158 n 158 TRP 158 H ASN 159 n 159 ASN 159 H SER 160 n 160 SER 160 H GLY 161 n 161 GLY 161 H SER 162 n 162 SER 162 H LEU 163 n 163 LEU 163 H SER 164 n 164 SER 164 H SER 165 n 165 SER 165 H GLY 166 n 166 GLY 166 H VAL 167 n 167 VAL 167 H HIS 168 n 168 HIS 168 H THR 169 n 169 THR 169 H PHE 170 n 170 PHE 170 H PRO 171 n 171 PRO 171 H ALA 172 n 172 ALA 172 H VAL 173 n 173 VAL 173 H LEU 174 n 174 LEU 174 H GLN 175 n 175 GLN 175 H SER 176 n 176 SER 176 H ASP 177 n 177 ASP 177 H LEU 178 n 178 LEU 178 H TYR 179 n 179 TYR 179 H THR 180 n 180 THR 180 H LEU 181 n 181 LEU 181 H SER 182 n 182 SER 182 H SER 183 n 183 SER 183 H SER 184 n 184 SER 184 H VAL 185 n 185 VAL 185 H THR 186 n 186 THR 186 H VAL 187 n 187 VAL 187 H THR 188 n 188 THR 188 H SER 189 n 189 SER 189 H SER 190 n 190 SER 190 H THR 191 n 191 THR 191 H TRP 192 n 192 TRP 192 H PRO 193 n 193 PRO 193 H SER 194 n 194 SER 194 H GLN 195 n 195 GLN 195 H SER 196 n 196 SER 196 H ILE 197 n 197 ILE 197 H THR 198 n 198 THR 198 H CYS 199 n 199 CYS 199 H ASN 200 n 200 ASN 200 H VAL 201 n 201 VAL 201 H ALA 202 n 202 ALA 202 H HIS 203 n 203 HIS 203 H PRO 204 n 204 PRO 204 H ALA 205 n 205 ALA 205 H SER 206 n 206 SER 206 H SER 207 n 207 SER 207 H THR 208 n 208 THR 208 H LYS 209 n 209 LYS 209 H VAL 210 n 210 VAL 210 H ASP 211 n 211 ASP 211 H LYS 212 n 212 LYS 212 H LYS 213 n 213 LYS 213 H ILE 214 n 214 ILE 214 H GLU 215 n 215 GLU 215 H author_and_software_defined_assembly PISA 2 dimeric 3420 -27 19160 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O THR 5 A O THR 5 L N ARG 24 A N ARG 24 L O ALA 19 A O ALA 19 L N ILE 80 A N ILE 80 L O ASP 75 A O ASP 75 L N SER 72 A N SER 72 L O LEU 11 A O LEU 11 L N ARG 108 A N ARG 108 L O THR 107 A O THR 107 L N TYR 91 A N TYR 91 L O VAL 90 A O VAL 90 L N GLN 43 A N GLN 43 L O TRP 40 A O TRP 40 L N ILE 53 A N ILE 53 L O THR 119 A O THR 119 L N ASN 142 A N ASN 142 L O ALA 135 A O ALA 135 L N LEU 186 A N LEU 186 L O SER 181 A O SER 181 L N SER 167 A N SER 167 L O SER 158 A O SER 158 L N ILE 155 A N ILE 155 L O ASN 150 A O ASN 150 L N THR 202 A N THR 202 L O TYR 197 A O TYR 197 L N PHE 214 A N PHE 214 H O GLN 3 B O GLN 3 H N SER 25 B N SER 25 H O VAL 18 B O VAL 18 H N LEU 83 B N LEU 83 H O THR 78 B O THR 78 H N ASP 73 B N ASP 73 H O THR 111 B O THR 111 H N TYR 94 B N TYR 94 H O VAL 93 B O VAL 93 H N GLN 39 B N GLN 39 H O ILE 34 B O ILE 34 H N ILE 51 B N ILE 51 H O TRP 50 B O TRP 50 H N LYS 59 B N LYS 59 H O SER 124 B O SER 124 H N LYS 147 B N LYS 147 H O VAL 140 B O VAL 140 H N VAL 187 B N VAL 187 H O SER 184 B O SER 184 H N HIS 168 B N HIS 168 H O THR 155 B O THR 155 H N ALA 202 B N ALA 202 H O CYS 199 B O CYS 199 H N ASP 211 B N ASP 211 H O VAL 173 B O VAL 173 H N THR 180 B N THR 180 1 L L LYS PRO 44 45 -147.67 1 3.11 0.50 120.30 123.41 L L L NE CZ NH1 ARG ARG ARG 24 24 24 N 1 6.47 0.80 106.30 112.77 L L L CD1 CG CD2 TRP TRP TRP 40 40 40 N 1 -6.00 0.80 107.30 101.30 L L L CE2 CD2 CG TRP TRP TRP 40 40 40 N 1 3.23 0.50 120.30 123.53 L L L NE CZ NH1 ARG ARG ARG 59 59 59 N 1 3.30 0.50 120.30 123.60 L L L NE CZ NH1 ARG ARG ARG 82 82 82 N 1 13.86 2.20 113.40 127.26 L L L CA CB CG GLN GLN GLN 95 95 95 N 1 3.28 0.50 120.30 123.58 L L L NE CZ NH1 ARG ARG ARG 108 108 108 N 1 15.25 2.30 115.30 130.55 L L L CA CB CG LEU LEU LEU 109 109 109 N 1 13.81 2.30 115.30 129.11 L L L CA CB CG LEU LEU LEU 141 141 141 N 1 7.12 0.80 106.30 113.42 L L L CD1 CG CD2 TRP TRP TRP 153 153 153 N 1 -6.05 0.80 107.30 101.25 L L L CE2 CD2 CG TRP TRP TRP 153 153 153 N 1 4.03 0.50 120.30 124.33 L L L NE CZ NH1 ARG ARG ARG 160 160 160 N 1 -3.55 0.50 120.30 116.75 L L L NE CZ NH2 ARG ARG ARG 160 160 160 N 1 5.72 0.80 106.30 112.02 L L L CD1 CG CD2 TRP TRP TRP 168 168 168 N 1 -5.55 0.80 107.30 101.75 L L L CE2 CD2 CG TRP TRP TRP 168 168 168 N 1 -4.49 0.60 121.00 116.51 L L L CB CG CD1 TYR TYR TYR 178 178 178 N 1 14.74 2.20 117.20 131.94 L L L CA C N ASN ASN SER 195 195 196 Y 1 14.37 2.20 117.20 131.57 H H H CA C N GLU GLU LEU 10 10 11 Y 1 -6.06 0.60 121.00 114.94 H H H CB CG CD2 TYR TYR TYR 27 27 27 N 1 6.18 0.80 106.30 112.48 H H H CD1 CG CD2 TRP TRP TRP 36 36 36 N 1 -9.19 1.30 127.00 117.81 H H H CB CG CD1 TRP TRP TRP 36 36 36 N 1 -6.18 0.80 107.30 101.12 H H H CE2 CD2 CG TRP TRP TRP 36 36 36 N 1 8.76 0.90 133.90 142.66 H H H CG CD2 CE3 TRP TRP TRP 36 36 36 N 1 6.45 0.80 106.30 112.75 H H H CD1 CG CD2 TRP TRP TRP 47 47 47 N 1 -8.02 1.30 127.00 118.98 H H H CB CG CD1 TRP TRP TRP 47 47 47 N 1 -6.03 0.80 107.30 101.27 H H H CE2 CD2 CG TRP TRP TRP 47 47 47 N 1 5.77 0.90 133.90 139.67 H H H CG CD2 CE3 TRP TRP TRP 47 47 47 N 1 5.24 0.80 106.30 111.54 H H H CD1 CG CD2 TRP TRP TRP 50 50 50 N 1 -9.19 1.30 127.00 117.81 H H H CB CG CD1 TRP TRP TRP 50 50 50 N 1 -5.81 0.80 107.30 101.49 H H H CE2 CD2 CG TRP TRP TRP 50 50 50 N 1 5.72 0.90 133.90 139.62 H H H CG CD2 CE3 TRP TRP TRP 50 50 50 N 1 -17.03 1.60 100.20 83.17 H H H CG SD CE MET MET MET 81 81 81 N 1 14.65 2.30 115.30 129.95 H H H CA CB CG LEU LEU LEU 83 83 83 N 1 3.22 0.50 120.30 123.52 H H H NE CZ NH1 ARG ARG ARG 98 98 98 N 1 5.78 0.80 106.30 112.08 H H H CD1 CG CD2 TRP TRP TRP 107 107 107 N 1 -5.50 0.80 107.30 101.80 H H H CE2 CD2 CG TRP TRP TRP 107 107 107 N 1 -11.92 1.90 110.30 98.38 H H H N CA CB THR THR THR 136 136 136 N 1 5.59 0.80 106.30 111.89 H H H CD1 CG CD2 TRP TRP TRP 158 158 158 N 1 -5.34 0.80 107.30 101.96 H H H CE2 CD2 CG TRP TRP TRP 158 158 158 N 1 16.14 2.20 117.20 133.34 H H H CA C N TRP TRP ASN 158 158 159 Y 1 7.20 0.80 106.30 113.50 H H H CD1 CG CD2 TRP TRP TRP 192 192 192 N 1 -6.17 0.80 107.30 101.13 H H H CE2 CD2 CG TRP TRP TRP 192 192 192 N 1 L L NE2 CD2 HIS HIS 31 31 -0.075 0.011 1.373 1.298 N 1 L L NE2 CD2 HIS HIS 98 98 -0.071 0.011 1.373 1.302 N 1 L L NE2 CD2 HIS HIS 194 194 -0.068 0.011 1.373 1.305 N 1 L L NE2 CD2 HIS HIS 203 203 -0.081 0.011 1.373 1.292 N 1 H H NE2 CD2 HIS HIS 35 35 -0.069 0.011 1.373 1.304 N 1 H H NE2 CD2 HIS HIS 168 168 -0.069 0.011 1.373 1.304 N 1 H H NE2 CD2 HIS HIS 203 203 -0.071 0.011 1.373 1.302 N 1 L LEU 52 -122.30 -61.23 1 L ARG 55 36.42 75.89 1 L VAL 56 56.52 -32.33 1 L SER 61 -56.48 -77.24 1 L GLU 190 179.15 -47.63 1 L ASN 195 -140.46 -44.34 1 H SER 7 172.66 130.00 1 H CYS 22 -151.90 85.99 1 H ASP 105 -108.53 -69.30 1 H CYS 132 165.17 127.59 1 H ASP 134 -58.68 48.42 1 H THR 135 -125.99 -96.75 1 H TRP 158 -93.68 -95.87 1 H LEU 163 90.33 76.69 1 H ALA 205 -59.95 4.70 1 H SER 206 -166.73 -112.57 0.164 0.164 2.8 6.0 11503 1 3.0 2.8 6.0 34 3325 0 0 3291 0.014 1PLG 0.054 1 8.5 model building X-PLOR refinement X-PLOR phasing X-PLOR IGG2A KAPPA EVIDENCE FOR THE EXTENDED HELICAL NATURE OF POLYSACCHARIDE EPITOPES. THE 2.8 ANGSTROMS RESOLUTION STRUCTURE AND THERMODYNAMICS OF LIGAND BINDING OF AN ANTIGEN BINDING FRAGMENT SPECIFIC FOR ALPHA-(2->8)-POLYSIALIC ACID 1 N N 2 N N 3 N N 3 N N L ALA 85 A ALA 85 HELX_P L ASP 87 A ASP 87 5 1 3 L SER 127 A SER 127 HELX_P L SER 132 A SER 132 1 2 6 L LYS 188 A LYS 188 HELX_P L TYR 191 A TYR 191 1 3 4 H PHE 29 B PHE 29 HELX_P H ASP 31 B ASP 31 5 4 3 H GLU 62 B GLU 62 HELX_P H PHE 64 B PHE 64 5 5 3 H SER 88 B SER 88 HELX_P H ASP 90 B ASP 90 5 6 3 disulf 2.018 L CYS 23 A SG CYS 23 1_555 L CYS 93 A SG CYS 93 1_555 disulf 2.020 L CYS 139 A SG CYS 139 1_555 L CYS 199 A SG CYS 199 1_555 disulf 2.036 H CYS 22 B SG CYS 22 1_555 H CYS 96 B SG CYS 96 1_555 disulf 2.005 H CYS 144 B SG CYS 144 1_555 H CYS 199 B SG CYS 199 1_555 IMMUNOGLOBULIN IMMUNOGLOBULIN L THR 7 A THR 7 1 L PRO 8 A PRO 8 -11.36 L VAL 99 A VAL 99 1 L PRO 100 A PRO 100 -0.03 L TYR 145 A TYR 145 1 L PRO 146 A PRO 146 -4.84 H PHE 150 B PHE 150 1 H PRO 151 B PRO 151 -18.06 H GLU 152 B GLU 152 1 H PRO 153 B PRO 153 -13.53 H TRP 192 B TRP 192 1 H PRO 193 B PRO 193 3.63 S16112 PIR 1 1 S16112 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLYWYLQKPGQSPKPLIYRVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYFCFQGTHVPYTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC GCAM_MOUSE UNP 2 1 P01865 AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSI TCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISW FVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEE MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHT TKSFSRTPGLDLDDVCAEAQDGELDGLWTTITIFISLFLLSVCYSASVTLFKVKWIFSSVVELKQTISPDYRNMIGQGA 1 215 1PLG 1 215 S16112 L 1 1 215 1 98 1PLG 118 215 P01865 H 2 118 215 4 5 4 4 4 5 4 3 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L MET 4 A MET 4 L THR 7 A THR 7 L ALA 19 A ALA 19 L SER 25 A SER 25 L ASP 75 A ASP 75 L ILE 80 A ILE 80 L PHE 67 A PHE 67 L SER 72 A SER 72 L SER 10 A SER 10 L VAL 13 A VAL 13 L THR 107 A THR 107 L ILE 111 A ILE 111 L GLY 89 A GLY 89 L GLN 95 A GLN 95 L LEU 38 A LEU 38 L GLN 43 A GLN 43 L PRO 49 A PRO 49 L ILE 53 A ILE 53 L THR 119 A THR 119 L PHE 123 A PHE 123 L GLY 134 A GLY 134 L ASN 142 A ASN 142 L MET 180 A MET 180 L THR 187 A THR 187 L VAL 164 A VAL 164 L TRP 168 A TRP 168 L SER 158 A SER 158 L ARG 160 A ARG 160 L ILE 149 A ILE 149 L ILE 155 A ILE 155 L TYR 197 A TYR 197 L HIS 203 A HIS 203 L ILE 210 A ILE 210 L PHE 214 A PHE 214 H GLN 3 B GLN 3 H GLY 8 B GLY 8 H VAL 18 B VAL 18 H SER 25 B SER 25 H THR 78 B THR 78 H LEU 83 B LEU 83 H ALA 68 B ALA 68 H ASP 73 B ASP 73 H THR 111 B THR 111 H VAL 113 B VAL 113 H ALA 92 B ALA 92 H GLY 99 B GLY 99 H TYR 33 B TYR 33 H GLN 39 B GLN 39 H LEU 45 B LEU 45 H TYR 52 B TYR 52 H THR 58 B THR 58 H TYR 60 B TYR 60 H SER 124 B SER 124 H LEU 128 B LEU 128 H SER 139 B SER 139 H TYR 149 B TYR 149 H TYR 179 B TYR 179 H THR 188 B THR 188 H VAL 167 B VAL 167 H THR 169 B THR 169 H THR 155 B THR 155 H THR 157 B THR 157 H THR 198 B THR 198 H ALA 202 B ALA 202 H LYS 209 B LYS 209 H LYS 212 B LYS 212 H VAL 173 B VAL 173 H GLN 175 B GLN 175 H LEU 178 B LEU 178 H THR 180 B THR 180 23 I 2 2 2