0.012636
0.000000
0.000000
0.000000
0.010964
0.000000
0.000000
0.000000
0.007072
0.00000
0.00000
0.00000
CIS PROLINE - PRO L 8
LYS L 44 - PRO L 45 OMEGA = 212.33 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CIS PROLINE - PRO L 100
CIS PROLINE - PRO L 146
CIS PROLINE - PRO H 151
CIS PROLINE - PRO H 153
CIS PROLINE - PRO H 193
Evans, S.V.
Sigurskjold, B.W.
Jennings, H.J.
Brisson, J.-R.
Tse, W.C.
To, R.
Altman, E.
Frosch, M.
Weisgerber, C.
Kratzin, H.
Klebert, S.
Vaesen, M.
Bitter-Suermann, D.
Rose, D.R.
Young, N.M.
Bundle, D.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
79.140
91.210
141.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
34
6737
6744
10.1021/bi00020a019
7538787
Evidence for the extended helical nature of polysaccharide epitopes. The 2.8 A resolution structure and thermodynamics of ligand binding of an antigen binding fragment specific for alpha-(2-->8)-polysialic acid.
1995
US
Biochemistry
BICHAW
0033
0006-2960
31
4996
Helical Epitope of the Group B Meningococcal Alpha(2->8)-Linked Sialic Acid Polysaccharide
1992
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
AREA DETECTOR
1991-04-24
SDMS
x-ray
1
1.5418
1.0
1.5418
23737.297
IGG2A=KAPPA=
FAB FRAGMENT THAT BINDS POLYSIALIC ACID
1
nat
polymer
23022.732
IGG2A=KAPPA=
FAB FRAGMENT THAT BINDS POLYSIALIC ACID
1
nat
polymer
18.015
water
34
nat
water
no
no
DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLYWYLQKPGQSPKPLIYRVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYFCFQGTHVPYTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN
DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLYWYLQKPGQSPKPLIYRVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYFCFQGTHVPYTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN
L
polypeptide(L)
no
no
QIQLQQSGPELVRPGASVKISCKASGYTFTDYYIHWVKQRPGEGLEWIGWIYPGSGNTKYNEKFKGKATLTVDTSSSTAY
MQLSSLTSEDSAVYFCARGGKFAMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS
GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE
QIQLQQSGPELVRPGASVKISCKASGYTFTDYYIHWVKQRPGEGLEWIGWIYPGSGNTKYNEKFKGKATLTVDTSSSTAY
MQLSSLTSEDSAVYFCARGGKFAMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS
GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
Mus musculus
house mouse
Mus
sample
10090
Mus musculus
1
2.73
54.90
repository
Initial release
Version format compliance
Version format compliance
Database references
1
0
1996-04-03
1
1
2008-03-24
1
2
2011-07-13
1
3
2012-02-22
Y
1995-04-24
REL
HOH
water
HOH
3
3
HOH
HOH
216
L
HOH
5
3
HOH
HOH
217
L
HOH
8
3
HOH
HOH
218
L
HOH
9
3
HOH
HOH
219
L
HOH
13
3
HOH
HOH
220
L
HOH
18
3
HOH
HOH
221
L
HOH
20
3
HOH
HOH
222
L
HOH
21
3
HOH
HOH
223
L
HOH
23
3
HOH
HOH
224
L
HOH
25
3
HOH
HOH
225
L
HOH
29
3
HOH
HOH
226
L
HOH
33
3
HOH
HOH
227
L
HOH
1
3
HOH
HOH
216
H
HOH
2
3
HOH
HOH
217
H
HOH
4
3
HOH
HOH
218
H
HOH
6
3
HOH
HOH
219
H
HOH
7
3
HOH
HOH
220
H
HOH
10
3
HOH
HOH
221
H
HOH
11
3
HOH
HOH
222
H
HOH
12
3
HOH
HOH
223
H
HOH
14
3
HOH
HOH
224
H
HOH
15
3
HOH
HOH
225
H
HOH
16
3
HOH
HOH
226
H
HOH
17
3
HOH
HOH
227
H
HOH
19
3
HOH
HOH
228
H
HOH
22
3
HOH
HOH
229
H
HOH
24
3
HOH
HOH
230
H
HOH
26
3
HOH
HOH
231
H
HOH
27
3
HOH
HOH
232
H
HOH
28
3
HOH
HOH
233
H
HOH
30
3
HOH
HOH
234
H
HOH
31
3
HOH
HOH
235
H
HOH
32
3
HOH
HOH
236
H
HOH
34
3
HOH
HOH
237
H
ASP
1
n
1
ASP
1
L
VAL
2
n
2
VAL
2
L
VAL
3
n
3
VAL
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
THR
7
n
7
THR
7
L
PRO
8
n
8
PRO
8
L
LEU
9
n
9
LEU
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
PRO
12
n
12
PRO
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
GLN
18
n
18
GLN
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
28
n
28
SER
28
L
LEU
29
n
29
LEU
29
L
VAL
30
n
30
VAL
30
L
HIS
31
n
31
HIS
31
L
SER
32
n
32
SER
32
L
ASN
33
n
33
ASN
33
L
GLY
34
n
34
GLY
34
L
ASN
35
n
35
ASN
35
L
THR
36
n
36
THR
36
L
TYR
37
n
37
TYR
37
L
LEU
38
n
38
LEU
38
L
TYR
39
n
39
TYR
39
L
TRP
40
n
40
TRP
40
L
TYR
41
n
41
TYR
41
L
LEU
42
n
42
LEU
42
L
GLN
43
n
43
GLN
43
L
LYS
44
n
44
LYS
44
L
PRO
45
n
45
PRO
45
L
GLY
46
n
46
GLY
46
L
GLN
47
n
47
GLN
47
L
SER
48
n
48
SER
48
L
PRO
49
n
49
PRO
49
L
LYS
50
n
50
LYS
50
L
PRO
51
n
51
PRO
51
L
LEU
52
n
52
LEU
52
L
ILE
53
n
53
ILE
53
L
TYR
54
n
54
TYR
54
L
ARG
55
n
55
ARG
55
L
VAL
56
n
56
VAL
56
L
SER
57
n
57
SER
57
L
ASN
58
n
58
ASN
58
L
ARG
59
n
59
ARG
59
L
PHE
60
n
60
PHE
60
L
SER
61
n
61
SER
61
L
GLY
62
n
62
GLY
62
L
VAL
63
n
63
VAL
63
L
PRO
64
n
64
PRO
64
L
ASP
65
n
65
ASP
65
L
ARG
66
n
66
ARG
66
L
PHE
67
n
67
PHE
67
L
SER
68
n
68
SER
68
L
GLY
69
n
69
GLY
69
L
SER
70
n
70
SER
70
L
GLY
71
n
71
GLY
71
L
SER
72
n
72
SER
72
L
GLY
73
n
73
GLY
73
L
THR
74
n
74
THR
74
L
ASP
75
n
75
ASP
75
L
PHE
76
n
76
PHE
76
L
THR
77
n
77
THR
77
L
LEU
78
n
78
LEU
78
L
LYS
79
n
79
LYS
79
L
ILE
80
n
80
ILE
80
L
SER
81
n
81
SER
81
L
ARG
82
n
82
ARG
82
L
VAL
83
n
83
VAL
83
L
GLU
84
n
84
GLU
84
L
ALA
85
n
85
ALA
85
L
GLU
86
n
86
GLU
86
L
ASP
87
n
87
ASP
87
L
LEU
88
n
88
LEU
88
L
GLY
89
n
89
GLY
89
L
VAL
90
n
90
VAL
90
L
TYR
91
n
91
TYR
91
L
PHE
92
n
92
PHE
92
L
CYS
93
n
93
CYS
93
L
PHE
94
n
94
PHE
94
L
GLN
95
n
95
GLN
95
L
GLY
96
n
96
GLY
96
L
THR
97
n
97
THR
97
L
HIS
98
n
98
HIS
98
L
VAL
99
n
99
VAL
99
L
PRO
100
n
100
PRO
100
L
TYR
101
n
101
TYR
101
L
THR
102
n
102
THR
102
L
PHE
103
n
103
PHE
103
L
GLY
104
n
104
GLY
104
L
GLY
105
n
105
GLY
105
L
GLY
106
n
106
GLY
106
L
THR
107
n
107
THR
107
L
ARG
108
n
108
ARG
108
L
LEU
109
n
109
LEU
109
L
GLU
110
n
110
GLU
110
L
ILE
111
n
111
ILE
111
L
LYS
112
n
112
LYS
112
L
ARG
113
n
113
ARG
113
L
ALA
114
n
114
ALA
114
L
ASP
115
n
115
ASP
115
L
ALA
116
n
116
ALA
116
L
ALA
117
n
117
ALA
117
L
PRO
118
n
118
PRO
118
L
THR
119
n
119
THR
119
L
VAL
120
n
120
VAL
120
L
SER
121
n
121
SER
121
L
ILE
122
n
122
ILE
122
L
PHE
123
n
123
PHE
123
L
PRO
124
n
124
PRO
124
L
PRO
125
n
125
PRO
125
L
SER
126
n
126
SER
126
L
SER
127
n
127
SER
127
L
GLU
128
n
128
GLU
128
L
GLN
129
n
129
GLN
129
L
LEU
130
n
130
LEU
130
L
THR
131
n
131
THR
131
L
SER
132
n
132
SER
132
L
GLY
133
n
133
GLY
133
L
GLY
134
n
134
GLY
134
L
ALA
135
n
135
ALA
135
L
SER
136
n
136
SER
136
L
VAL
137
n
137
VAL
137
L
VAL
138
n
138
VAL
138
L
CYS
139
n
139
CYS
139
L
PHE
140
n
140
PHE
140
L
LEU
141
n
141
LEU
141
L
ASN
142
n
142
ASN
142
L
ASN
143
n
143
ASN
143
L
PHE
144
n
144
PHE
144
L
TYR
145
n
145
TYR
145
L
PRO
146
n
146
PRO
146
L
LYS
147
n
147
LYS
147
L
ASP
148
n
148
ASP
148
L
ILE
149
n
149
ILE
149
L
ASN
150
n
150
ASN
150
L
VAL
151
n
151
VAL
151
L
LYS
152
n
152
LYS
152
L
TRP
153
n
153
TRP
153
L
LYS
154
n
154
LYS
154
L
ILE
155
n
155
ILE
155
L
ASP
156
n
156
ASP
156
L
GLY
157
n
157
GLY
157
L
SER
158
n
158
SER
158
L
GLU
159
n
159
GLU
159
L
ARG
160
n
160
ARG
160
L
GLN
161
n
161
GLN
161
L
ASN
162
n
162
ASN
162
L
GLY
163
n
163
GLY
163
L
VAL
164
n
164
VAL
164
L
LEU
165
n
165
LEU
165
L
ASN
166
n
166
ASN
166
L
SER
167
n
167
SER
167
L
TRP
168
n
168
TRP
168
L
THR
169
n
169
THR
169
L
ASP
170
n
170
ASP
170
L
GLN
171
n
171
GLN
171
L
ASP
172
n
172
ASP
172
L
SER
173
n
173
SER
173
L
LYS
174
n
174
LYS
174
L
ASP
175
n
175
ASP
175
L
SER
176
n
176
SER
176
L
THR
177
n
177
THR
177
L
TYR
178
n
178
TYR
178
L
SER
179
n
179
SER
179
L
MET
180
n
180
MET
180
L
SER
181
n
181
SER
181
L
SER
182
n
182
SER
182
L
THR
183
n
183
THR
183
L
LEU
184
n
184
LEU
184
L
THR
185
n
185
THR
185
L
LEU
186
n
186
LEU
186
L
THR
187
n
187
THR
187
L
LYS
188
n
188
LYS
188
L
ASP
189
n
189
ASP
189
L
GLU
190
n
190
GLU
190
L
TYR
191
n
191
TYR
191
L
GLU
192
n
192
GLU
192
L
ARG
193
n
193
ARG
193
L
HIS
194
n
194
HIS
194
L
ASN
195
n
195
ASN
195
L
SER
196
n
196
SER
196
L
TYR
197
n
197
TYR
197
L
THR
198
n
198
THR
198
L
CYS
199
n
199
CYS
199
L
GLU
200
n
200
GLU
200
L
ALA
201
n
201
ALA
201
L
THR
202
n
202
THR
202
L
HIS
203
n
203
HIS
203
L
LYS
204
n
204
LYS
204
L
THR
205
n
205
THR
205
L
SER
206
n
206
SER
206
L
THR
207
n
207
THR
207
L
SER
208
n
208
SER
208
L
PRO
209
n
209
PRO
209
L
ILE
210
n
210
ILE
210
L
VAL
211
n
211
VAL
211
L
LYS
212
n
212
LYS
212
L
SER
213
n
213
SER
213
L
PHE
214
n
214
PHE
214
L
ASN
215
n
215
ASN
215
L
GLN
1
n
1
GLN
1
H
ILE
2
n
2
ILE
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
GLU
10
n
10
GLU
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
ARG
13
n
13
ARG
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
ALA
16
n
16
ALA
16
H
SER
17
n
17
SER
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
ILE
20
n
20
ILE
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
THR
30
n
30
THR
30
H
ASP
31
n
31
ASP
31
H
TYR
32
n
32
TYR
32
H
TYR
33
n
33
TYR
33
H
ILE
34
n
34
ILE
34
H
HIS
35
n
35
HIS
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
LYS
38
n
38
LYS
38
H
GLN
39
n
39
GLN
39
H
ARG
40
n
40
ARG
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
GLU
43
n
43
GLU
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
TRP
50
n
50
TRP
50
H
ILE
51
n
51
ILE
51
H
TYR
52
n
52
TYR
52
H
PRO
53
n
53
PRO
53
H
GLY
54
n
54
GLY
54
H
SER
55
n
55
SER
55
H
GLY
56
n
56
GLY
56
H
ASN
57
n
57
ASN
57
H
THR
58
n
58
THR
58
H
LYS
59
n
59
LYS
59
H
TYR
60
n
60
TYR
60
H
ASN
61
n
61
ASN
61
H
GLU
62
n
62
GLU
62
H
LYS
63
n
63
LYS
63
H
PHE
64
n
64
PHE
64
H
LYS
65
n
65
LYS
65
H
GLY
66
n
66
GLY
66
H
LYS
67
n
67
LYS
67
H
ALA
68
n
68
ALA
68
H
THR
69
n
69
THR
69
H
LEU
70
n
70
LEU
70
H
THR
71
n
71
THR
71
H
VAL
72
n
72
VAL
72
H
ASP
73
n
73
ASP
73
H
THR
74
n
74
THR
74
H
SER
75
n
75
SER
75
H
SER
76
n
76
SER
76
H
SER
77
n
77
SER
77
H
THR
78
n
78
THR
78
H
ALA
79
n
79
ALA
79
H
TYR
80
n
80
TYR
80
H
MET
81
n
81
MET
81
H
GLN
82
n
82
GLN
82
H
LEU
83
n
83
LEU
83
H
SER
84
n
84
SER
84
H
SER
85
n
85
SER
85
H
LEU
86
n
86
LEU
86
H
THR
87
n
87
THR
87
H
SER
88
n
88
SER
88
H
GLU
89
n
89
GLU
89
H
ASP
90
n
90
ASP
90
H
SER
91
n
91
SER
91
H
ALA
92
n
92
ALA
92
H
VAL
93
n
93
VAL
93
H
TYR
94
n
94
TYR
94
H
PHE
95
n
95
PHE
95
H
CYS
96
n
96
CYS
96
H
ALA
97
n
97
ALA
97
H
ARG
98
n
98
ARG
98
H
GLY
99
n
99
GLY
99
H
GLY
100
n
100
GLY
100
H
LYS
101
n
101
LYS
101
H
PHE
102
n
102
PHE
102
H
ALA
103
n
103
ALA
103
H
MET
104
n
104
MET
104
H
ASP
105
n
105
ASP
105
H
TYR
106
n
106
TYR
106
H
TRP
107
n
107
TRP
107
H
GLY
108
n
108
GLY
108
H
GLN
109
n
109
GLN
109
H
GLY
110
n
110
GLY
110
H
THR
111
n
111
THR
111
H
SER
112
n
112
SER
112
H
VAL
113
n
113
VAL
113
H
THR
114
n
114
THR
114
H
VAL
115
n
115
VAL
115
H
SER
116
n
116
SER
116
H
SER
117
n
117
SER
117
H
ALA
118
n
118
ALA
118
H
LYS
119
n
119
LYS
119
H
THR
120
n
120
THR
120
H
THR
121
n
121
THR
121
H
ALA
122
n
122
ALA
122
H
PRO
123
n
123
PRO
123
H
SER
124
n
124
SER
124
H
VAL
125
n
125
VAL
125
H
TYR
126
n
126
TYR
126
H
PRO
127
n
127
PRO
127
H
LEU
128
n
128
LEU
128
H
ALA
129
n
129
ALA
129
H
PRO
130
n
130
PRO
130
H
VAL
131
n
131
VAL
131
H
CYS
132
n
132
CYS
132
H
GLY
133
n
133
GLY
133
H
ASP
134
n
134
ASP
134
H
THR
135
n
135
THR
135
H
THR
136
n
136
THR
136
H
GLY
137
n
137
GLY
137
H
SER
138
n
138
SER
138
H
SER
139
n
139
SER
139
H
VAL
140
n
140
VAL
140
H
THR
141
n
141
THR
141
H
LEU
142
n
142
LEU
142
H
GLY
143
n
143
GLY
143
H
CYS
144
n
144
CYS
144
H
LEU
145
n
145
LEU
145
H
VAL
146
n
146
VAL
146
H
LYS
147
n
147
LYS
147
H
GLY
148
n
148
GLY
148
H
TYR
149
n
149
TYR
149
H
PHE
150
n
150
PHE
150
H
PRO
151
n
151
PRO
151
H
GLU
152
n
152
GLU
152
H
PRO
153
n
153
PRO
153
H
VAL
154
n
154
VAL
154
H
THR
155
n
155
THR
155
H
LEU
156
n
156
LEU
156
H
THR
157
n
157
THR
157
H
TRP
158
n
158
TRP
158
H
ASN
159
n
159
ASN
159
H
SER
160
n
160
SER
160
H
GLY
161
n
161
GLY
161
H
SER
162
n
162
SER
162
H
LEU
163
n
163
LEU
163
H
SER
164
n
164
SER
164
H
SER
165
n
165
SER
165
H
GLY
166
n
166
GLY
166
H
VAL
167
n
167
VAL
167
H
HIS
168
n
168
HIS
168
H
THR
169
n
169
THR
169
H
PHE
170
n
170
PHE
170
H
PRO
171
n
171
PRO
171
H
ALA
172
n
172
ALA
172
H
VAL
173
n
173
VAL
173
H
LEU
174
n
174
LEU
174
H
GLN
175
n
175
GLN
175
H
SER
176
n
176
SER
176
H
ASP
177
n
177
ASP
177
H
LEU
178
n
178
LEU
178
H
TYR
179
n
179
TYR
179
H
THR
180
n
180
THR
180
H
LEU
181
n
181
LEU
181
H
SER
182
n
182
SER
182
H
SER
183
n
183
SER
183
H
SER
184
n
184
SER
184
H
VAL
185
n
185
VAL
185
H
THR
186
n
186
THR
186
H
VAL
187
n
187
VAL
187
H
THR
188
n
188
THR
188
H
SER
189
n
189
SER
189
H
SER
190
n
190
SER
190
H
THR
191
n
191
THR
191
H
TRP
192
n
192
TRP
192
H
PRO
193
n
193
PRO
193
H
SER
194
n
194
SER
194
H
GLN
195
n
195
GLN
195
H
SER
196
n
196
SER
196
H
ILE
197
n
197
ILE
197
H
THR
198
n
198
THR
198
H
CYS
199
n
199
CYS
199
H
ASN
200
n
200
ASN
200
H
VAL
201
n
201
VAL
201
H
ALA
202
n
202
ALA
202
H
HIS
203
n
203
HIS
203
H
PRO
204
n
204
PRO
204
H
ALA
205
n
205
ALA
205
H
SER
206
n
206
SER
206
H
SER
207
n
207
SER
207
H
THR
208
n
208
THR
208
H
LYS
209
n
209
LYS
209
H
VAL
210
n
210
VAL
210
H
ASP
211
n
211
ASP
211
H
LYS
212
n
212
LYS
212
H
LYS
213
n
213
LYS
213
H
ILE
214
n
214
ILE
214
H
GLU
215
n
215
GLU
215
H
author_and_software_defined_assembly
PISA
2
dimeric
3420
-27
19160
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
THR
5
A
O
THR
5
L
N
ARG
24
A
N
ARG
24
L
O
ALA
19
A
O
ALA
19
L
N
ILE
80
A
N
ILE
80
L
O
ASP
75
A
O
ASP
75
L
N
SER
72
A
N
SER
72
L
O
LEU
11
A
O
LEU
11
L
N
ARG
108
A
N
ARG
108
L
O
THR
107
A
O
THR
107
L
N
TYR
91
A
N
TYR
91
L
O
VAL
90
A
O
VAL
90
L
N
GLN
43
A
N
GLN
43
L
O
TRP
40
A
O
TRP
40
L
N
ILE
53
A
N
ILE
53
L
O
THR
119
A
O
THR
119
L
N
ASN
142
A
N
ASN
142
L
O
ALA
135
A
O
ALA
135
L
N
LEU
186
A
N
LEU
186
L
O
SER
181
A
O
SER
181
L
N
SER
167
A
N
SER
167
L
O
SER
158
A
O
SER
158
L
N
ILE
155
A
N
ILE
155
L
O
ASN
150
A
O
ASN
150
L
N
THR
202
A
N
THR
202
L
O
TYR
197
A
O
TYR
197
L
N
PHE
214
A
N
PHE
214
H
O
GLN
3
B
O
GLN
3
H
N
SER
25
B
N
SER
25
H
O
VAL
18
B
O
VAL
18
H
N
LEU
83
B
N
LEU
83
H
O
THR
78
B
O
THR
78
H
N
ASP
73
B
N
ASP
73
H
O
THR
111
B
O
THR
111
H
N
TYR
94
B
N
TYR
94
H
O
VAL
93
B
O
VAL
93
H
N
GLN
39
B
N
GLN
39
H
O
ILE
34
B
O
ILE
34
H
N
ILE
51
B
N
ILE
51
H
O
TRP
50
B
O
TRP
50
H
N
LYS
59
B
N
LYS
59
H
O
SER
124
B
O
SER
124
H
N
LYS
147
B
N
LYS
147
H
O
VAL
140
B
O
VAL
140
H
N
VAL
187
B
N
VAL
187
H
O
SER
184
B
O
SER
184
H
N
HIS
168
B
N
HIS
168
H
O
THR
155
B
O
THR
155
H
N
ALA
202
B
N
ALA
202
H
O
CYS
199
B
O
CYS
199
H
N
ASP
211
B
N
ASP
211
H
O
VAL
173
B
O
VAL
173
H
N
THR
180
B
N
THR
180
1
L
L
LYS
PRO
44
45
-147.67
1
3.11
0.50
120.30
123.41
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
24
24
24
N
1
6.47
0.80
106.30
112.77
L
L
L
CD1
CG
CD2
TRP
TRP
TRP
40
40
40
N
1
-6.00
0.80
107.30
101.30
L
L
L
CE2
CD2
CG
TRP
TRP
TRP
40
40
40
N
1
3.23
0.50
120.30
123.53
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
59
59
59
N
1
3.30
0.50
120.30
123.60
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
82
82
82
N
1
13.86
2.20
113.40
127.26
L
L
L
CA
CB
CG
GLN
GLN
GLN
95
95
95
N
1
3.28
0.50
120.30
123.58
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
108
108
108
N
1
15.25
2.30
115.30
130.55
L
L
L
CA
CB
CG
LEU
LEU
LEU
109
109
109
N
1
13.81
2.30
115.30
129.11
L
L
L
CA
CB
CG
LEU
LEU
LEU
141
141
141
N
1
7.12
0.80
106.30
113.42
L
L
L
CD1
CG
CD2
TRP
TRP
TRP
153
153
153
N
1
-6.05
0.80
107.30
101.25
L
L
L
CE2
CD2
CG
TRP
TRP
TRP
153
153
153
N
1
4.03
0.50
120.30
124.33
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
160
160
160
N
1
-3.55
0.50
120.30
116.75
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
160
160
160
N
1
5.72
0.80
106.30
112.02
L
L
L
CD1
CG
CD2
TRP
TRP
TRP
168
168
168
N
1
-5.55
0.80
107.30
101.75
L
L
L
CE2
CD2
CG
TRP
TRP
TRP
168
168
168
N
1
-4.49
0.60
121.00
116.51
L
L
L
CB
CG
CD1
TYR
TYR
TYR
178
178
178
N
1
14.74
2.20
117.20
131.94
L
L
L
CA
C
N
ASN
ASN
SER
195
195
196
Y
1
14.37
2.20
117.20
131.57
H
H
H
CA
C
N
GLU
GLU
LEU
10
10
11
Y
1
-6.06
0.60
121.00
114.94
H
H
H
CB
CG
CD2
TYR
TYR
TYR
27
27
27
N
1
6.18
0.80
106.30
112.48
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
36
36
36
N
1
-9.19
1.30
127.00
117.81
H
H
H
CB
CG
CD1
TRP
TRP
TRP
36
36
36
N
1
-6.18
0.80
107.30
101.12
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
36
36
36
N
1
8.76
0.90
133.90
142.66
H
H
H
CG
CD2
CE3
TRP
TRP
TRP
36
36
36
N
1
6.45
0.80
106.30
112.75
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
47
47
47
N
1
-8.02
1.30
127.00
118.98
H
H
H
CB
CG
CD1
TRP
TRP
TRP
47
47
47
N
1
-6.03
0.80
107.30
101.27
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
47
47
47
N
1
5.77
0.90
133.90
139.67
H
H
H
CG
CD2
CE3
TRP
TRP
TRP
47
47
47
N
1
5.24
0.80
106.30
111.54
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
50
50
50
N
1
-9.19
1.30
127.00
117.81
H
H
H
CB
CG
CD1
TRP
TRP
TRP
50
50
50
N
1
-5.81
0.80
107.30
101.49
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
50
50
50
N
1
5.72
0.90
133.90
139.62
H
H
H
CG
CD2
CE3
TRP
TRP
TRP
50
50
50
N
1
-17.03
1.60
100.20
83.17
H
H
H
CG
SD
CE
MET
MET
MET
81
81
81
N
1
14.65
2.30
115.30
129.95
H
H
H
CA
CB
CG
LEU
LEU
LEU
83
83
83
N
1
3.22
0.50
120.30
123.52
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
98
98
98
N
1
5.78
0.80
106.30
112.08
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
107
107
107
N
1
-5.50
0.80
107.30
101.80
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
107
107
107
N
1
-11.92
1.90
110.30
98.38
H
H
H
N
CA
CB
THR
THR
THR
136
136
136
N
1
5.59
0.80
106.30
111.89
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
158
158
158
N
1
-5.34
0.80
107.30
101.96
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
158
158
158
N
1
16.14
2.20
117.20
133.34
H
H
H
CA
C
N
TRP
TRP
ASN
158
158
159
Y
1
7.20
0.80
106.30
113.50
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
192
192
192
N
1
-6.17
0.80
107.30
101.13
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
192
192
192
N
1
L
L
NE2
CD2
HIS
HIS
31
31
-0.075
0.011
1.373
1.298
N
1
L
L
NE2
CD2
HIS
HIS
98
98
-0.071
0.011
1.373
1.302
N
1
L
L
NE2
CD2
HIS
HIS
194
194
-0.068
0.011
1.373
1.305
N
1
L
L
NE2
CD2
HIS
HIS
203
203
-0.081
0.011
1.373
1.292
N
1
H
H
NE2
CD2
HIS
HIS
35
35
-0.069
0.011
1.373
1.304
N
1
H
H
NE2
CD2
HIS
HIS
168
168
-0.069
0.011
1.373
1.304
N
1
H
H
NE2
CD2
HIS
HIS
203
203
-0.071
0.011
1.373
1.302
N
1
L
LEU
52
-122.30
-61.23
1
L
ARG
55
36.42
75.89
1
L
VAL
56
56.52
-32.33
1
L
SER
61
-56.48
-77.24
1
L
GLU
190
179.15
-47.63
1
L
ASN
195
-140.46
-44.34
1
H
SER
7
172.66
130.00
1
H
CYS
22
-151.90
85.99
1
H
ASP
105
-108.53
-69.30
1
H
CYS
132
165.17
127.59
1
H
ASP
134
-58.68
48.42
1
H
THR
135
-125.99
-96.75
1
H
TRP
158
-93.68
-95.87
1
H
LEU
163
90.33
76.69
1
H
ALA
205
-59.95
4.70
1
H
SER
206
-166.73
-112.57
0.164
0.164
2.8
6.0
11503
1
3.0
2.8
6.0
34
3325
0
0
3291
0.014
1PLG
0.054
1
8.5
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
IGG2A KAPPA
EVIDENCE FOR THE EXTENDED HELICAL NATURE OF POLYSACCHARIDE EPITOPES. THE 2.8 ANGSTROMS RESOLUTION STRUCTURE AND THERMODYNAMICS OF LIGAND BINDING OF AN ANTIGEN BINDING FRAGMENT SPECIFIC FOR ALPHA-(2->8)-POLYSIALIC ACID
1
N
N
2
N
N
3
N
N
3
N
N
L
ALA
85
A
ALA
85
HELX_P
L
ASP
87
A
ASP
87
5
1
3
L
SER
127
A
SER
127
HELX_P
L
SER
132
A
SER
132
1
2
6
L
LYS
188
A
LYS
188
HELX_P
L
TYR
191
A
TYR
191
1
3
4
H
PHE
29
B
PHE
29
HELX_P
H
ASP
31
B
ASP
31
5
4
3
H
GLU
62
B
GLU
62
HELX_P
H
PHE
64
B
PHE
64
5
5
3
H
SER
88
B
SER
88
HELX_P
H
ASP
90
B
ASP
90
5
6
3
disulf
2.018
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
93
A
SG
CYS
93
1_555
disulf
2.020
L
CYS
139
A
SG
CYS
139
1_555
L
CYS
199
A
SG
CYS
199
1_555
disulf
2.036
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
96
B
SG
CYS
96
1_555
disulf
2.005
H
CYS
144
B
SG
CYS
144
1_555
H
CYS
199
B
SG
CYS
199
1_555
IMMUNOGLOBULIN
IMMUNOGLOBULIN
L
THR
7
A
THR
7
1
L
PRO
8
A
PRO
8
-11.36
L
VAL
99
A
VAL
99
1
L
PRO
100
A
PRO
100
-0.03
L
TYR
145
A
TYR
145
1
L
PRO
146
A
PRO
146
-4.84
H
PHE
150
B
PHE
150
1
H
PRO
151
B
PRO
151
-18.06
H
GLU
152
B
GLU
152
1
H
PRO
153
B
PRO
153
-13.53
H
TRP
192
B
TRP
192
1
H
PRO
193
B
PRO
193
3.63
S16112
PIR
1
1
S16112
DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLYWYLQKPGQSPKPLIYRVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYFCFQGTHVPYTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
GCAM_MOUSE
UNP
2
1
P01865
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSI
TCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISW
FVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEE
MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHT
TKSFSRTPGLDLDDVCAEAQDGELDGLWTTITIFISLFLLSVCYSASVTLFKVKWIFSSVVELKQTISPDYRNMIGQGA
1
215
1PLG
1
215
S16112
L
1
1
215
1
98
1PLG
118
215
P01865
H
2
118
215
4
5
4
4
4
5
4
3
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
THR
7
A
THR
7
L
ALA
19
A
ALA
19
L
SER
25
A
SER
25
L
ASP
75
A
ASP
75
L
ILE
80
A
ILE
80
L
PHE
67
A
PHE
67
L
SER
72
A
SER
72
L
SER
10
A
SER
10
L
VAL
13
A
VAL
13
L
THR
107
A
THR
107
L
ILE
111
A
ILE
111
L
GLY
89
A
GLY
89
L
GLN
95
A
GLN
95
L
LEU
38
A
LEU
38
L
GLN
43
A
GLN
43
L
PRO
49
A
PRO
49
L
ILE
53
A
ILE
53
L
THR
119
A
THR
119
L
PHE
123
A
PHE
123
L
GLY
134
A
GLY
134
L
ASN
142
A
ASN
142
L
MET
180
A
MET
180
L
THR
187
A
THR
187
L
VAL
164
A
VAL
164
L
TRP
168
A
TRP
168
L
SER
158
A
SER
158
L
ARG
160
A
ARG
160
L
ILE
149
A
ILE
149
L
ILE
155
A
ILE
155
L
TYR
197
A
TYR
197
L
HIS
203
A
HIS
203
L
ILE
210
A
ILE
210
L
PHE
214
A
PHE
214
H
GLN
3
B
GLN
3
H
GLY
8
B
GLY
8
H
VAL
18
B
VAL
18
H
SER
25
B
SER
25
H
THR
78
B
THR
78
H
LEU
83
B
LEU
83
H
ALA
68
B
ALA
68
H
ASP
73
B
ASP
73
H
THR
111
B
THR
111
H
VAL
113
B
VAL
113
H
ALA
92
B
ALA
92
H
GLY
99
B
GLY
99
H
TYR
33
B
TYR
33
H
GLN
39
B
GLN
39
H
LEU
45
B
LEU
45
H
TYR
52
B
TYR
52
H
THR
58
B
THR
58
H
TYR
60
B
TYR
60
H
SER
124
B
SER
124
H
LEU
128
B
LEU
128
H
SER
139
B
SER
139
H
TYR
149
B
TYR
149
H
TYR
179
B
TYR
179
H
THR
188
B
THR
188
H
VAL
167
B
VAL
167
H
THR
169
B
THR
169
H
THR
155
B
THR
155
H
THR
157
B
THR
157
H
THR
198
B
THR
198
H
ALA
202
B
ALA
202
H
LYS
209
B
LYS
209
H
LYS
212
B
LYS
212
H
VAL
173
B
VAL
173
H
GLN
175
B
GLN
175
H
LEU
178
B
LEU
178
H
THR
180
B
THR
180
23
I 2 2 2