0.010895
0.000000
0.000000
0.000000
0.010895
0.000000
0.000000
0.000000
0.007053
0.00000
0.00000
0.00000
Pereira de Jesus-Tran, K.
Serre, L.
Zelwer, C.
Castaing, B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
91.784
91.784
141.792
C5 H11 O6 P
198.111
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
ABASIC DIDEOXYRIBOSE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
N
C
N
8
R
C
N
9
N
O
N
10
N
C
N
11
S
C
N
12
N
O
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
N
N
25
S
C
N
26
N
C
N
27
N
O
N
28
N
C
N
29
N
O
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
N
N
38
S
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
C
N
43
N
C
N
44
N
N
N
45
N
C
N
46
N
N
N
47
N
N
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
N
N
65
S
C
N
66
N
C
N
67
N
O
N
68
N
C
N
69
N
C
N
70
N
O
N
71
N
N
N
72
N
O
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
O
N
88
N
O
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
R
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
S
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
N
C
N
122
R
C
Y
123
N
N
Y
124
N
C
Y
125
N
N
Y
126
N
C
Y
127
N
C
N
128
N
N
Y
129
N
N
Y
130
N
C
Y
131
N
N
Y
132
N
C
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
O
N
148
N
P
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
C
N
153
R
C
N
154
N
O
N
155
S
C
N
156
N
O
N
157
N
C
N
158
R
C
N
159
N
N
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
C
N
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
Y
193
N
N
Y
194
N
C
Y
195
N
N
Y
196
N
C
N
197
N
C
N
198
N
O
N
199
N
N
N
200
N
C
N
201
N
N
N
202
N
N
Y
203
N
C
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
O
N
219
N
P
N
220
N
O
N
221
N
O
N
222
N
O
N
223
N
C
N
224
R
C
N
225
N
O
N
226
S
C
N
227
N
O
N
228
N
C
N
229
R
C
N
230
N
N
N
231
N
C
N
232
N
O
N
233
N
N
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
Y
322
N
C
Y
323
N
N
Y
324
N
C
Y
325
N
C
Y
326
N
N
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
S
C
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
N
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
C
N
416
N
S
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
N
N
454
S
C
N
455
N
C
N
456
N
O
N
457
N
C
N
458
N
C
N
459
N
C
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
N
475
N
O
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
N
N
485
S
C
N
486
N
C
N
487
N
O
N
488
R
C
N
489
N
O
N
490
N
C
N
491
N
O
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
N
Y
510
N
C
Y
511
N
C
Y
512
N
C
Y
513
N
C
Y
514
N
C
N
515
N
O
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
N
N
529
S
C
N
530
N
C
N
531
N
O
N
532
N
C
Y
533
N
C
Y
534
N
C
Y
535
N
C
Y
536
N
C
Y
537
N
C
Y
538
N
C
N
539
N
O
N
540
N
O
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
N
N
553
S
C
N
554
N
C
N
555
N
O
N
556
N
C
N
557
N
C
N
558
N
C
N
559
N
O
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
Y
129
N
sing
Y
130
N
sing
Y
131
N
doub
N
132
N
sing
Y
133
N
sing
Y
134
N
sing
Y
135
N
doub
N
136
N
sing
Y
137
N
doub
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
N
142
N
sing
Y
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
Y
202
N
sing
Y
203
N
sing
Y
204
N
doub
N
205
N
sing
Y
206
N
sing
N
207
N
sing
Y
208
N
doub
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
Y
327
N
doub
N
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
Y
433
N
doub
Y
434
N
sing
Y
435
N
sing
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
doub
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
doub
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
Y
502
N
doub
Y
503
N
sing
Y
504
N
sing
N
505
N
sing
Y
506
N
doub
Y
507
N
sing
Y
508
N
sing
N
509
N
sing
Y
510
N
sing
Y
511
N
doub
N
512
N
sing
Y
513
N
doub
N
514
N
sing
Y
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
doub
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
Y
530
N
doub
Y
531
N
sing
Y
532
N
sing
N
533
N
sing
Y
534
N
doub
N
535
N
sing
Y
536
N
doub
N
537
N
sing
Y
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
doub
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
33
5936
5944
10.1093/nar/gki879
16243784
Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA.
2005
UK
Embo J.
EMJODG
0897
0261-4189
21
2854
2865
10.1093/emboj/cdf304
Crystal structure of the Lactococcus lactis Formamidopyrimidine DNA glycosylase bound to an abasic site analogue-containing DNA
2002
10.2210/pdb1pm5/pdb
pdb_00001pm5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2003-02-14
MARRESEARCH
MIRROR
SINGLE WAVELENGTH
M
x-ray
1
0.97
1.0
BM30A
ESRF
0.97
SYNCHROTRON
ESRF BEAMLINE BM30A
4054.614
DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3')
1
syn
polymer
4355.884
DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3')
1
syn
polymer
31116.217
Formamidopyrimidine-DNA glycosylase
3.2.2.23
Fpg
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
18.015
water
306
nat
water
FAPY-DNA glycosylase
3.2.2.23
no
yes
(DC)(DT)(DC)(DT)(DT)(DT)(3DR)(DT)(DT)(DT)(DC)(DT)(DC)(DG)
CTCTTTNTTTCTCG
D
polydeoxyribonucleotide
no
no
(DG)(DC)(DG)(DA)(DG)(DA)(DA)(DA)(DC)(DA)(DA)(DA)(DG)(DA)
GCGAGAAACAAAGA
E
polydeoxyribonucleotide
no
no
PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYR
LATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYL
LEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYGK
TGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK
PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYR
LATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYL
LEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYGK
TGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lactococcus
Lactococcus lactis
subsp. cremoris
Escherichia
sample
MUTM OR FPG
1359
Lactococcus lactis subsp. cremoris
562
Escherichia coli
PLASMID
PMAL-C
1
3.75
67.18
VAPOR DIFFUSION, HANGING DROP
8.0
citrate, hepes, glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 296K
296
citrate
1
hepes
1
glycerol
1
water
1
citrate
2
glycerol
2
4.345
1
20
D
2
E
28
2.086
D_DT2:DA28_E
1
-8.027
-0.256
-0.079
-0.072
1.674
1
19
D
3
E
27
2.253
D_DC3:DG27_E
2
-8.486
-0.022
-0.163
-0.007
-5.914
1
20
D
4
E
26
3.737
D_DT4:DA26_E
3
-9.800
-0.081
0.106
0.145
6.428
1
20
D
5
E
25
1.976
D_DT5:DA25_E
4
-6.464
-0.271
-0.469
-0.092
16.140
1
20
D
6
E
24
0.165
D_DT6:DA24_E
5
-0.812
-0.001
-0.550
-0.077
-8.661
1
20
D
8
E
22
-1.669
D_DT8:DA22_E
6
-2.000
-0.031
-0.138
-0.102
0.435
1
20
D
9
E
21
-0.463
D_DT9:DA21_E
7
-9.985
-0.035
-0.234
0.016
2.827
1
20
D
10
E
20
0.489
D_DT10:DA20_E
8
-6.546
-0.141
-0.188
-0.079
3.277
1
19
D
11
E
19
-2.453
D_DC11:DG19_E
9
-11.858
0.182
-0.319
0.084
-0.429
1
20
D
12
E
18
-1.623
D_DT12:DA18_E
10
-14.453
-0.246
0.056
-0.047
-5.983
1
19
D
13
E
17
0.564
D_DC13:DG17_E
11
-8.717
0.287
0.207
0.018
-1.590
1
19
D
14
E
16
-0.860
D_DG14:DC16_E
12
-5.104
0.177
-0.390
-0.053
3.332
37.807
D
D
2
3
6.295
E
E
28
27
3.349
4.070
0.378
-0.128
DD_DT2DC3:DG27DA28_EE
1
1.892
-2.926
37.549
-0.734
-0.334
3.385
34.214
D
D
3
4
11.123
E
E
27
26
3.546
6.506
0.231
-0.550
DD_DC3DT4:DA26DG27_EE
2
0.234
-0.401
33.607
-2.032
-0.353
2.939
32.168
D
D
4
5
6.190
E
E
26
25
2.957
3.418
0.143
-0.007
DD_DT4DT5:DA25DA26_EE
3
3.403
-6.164
31.814
-0.567
0.293
3.082
30.683
D
D
5
6
22.335
E
E
25
24
3.218
11.539
-0.099
0.254
DD_DT5DT6:DA24DA25_EE
4
0.861
-1.667
28.466
-1.793
0.357
3.112
30.441
D
D
8
9
10.419
E
E
22
21
3.141
5.443
0.269
0.111
DD_DT8DT9:DA21DA22_EE
5
-0.002
0.004
29.962
-0.838
-0.513
3.338
33.646
D
D
9
10
6.726
E
E
21
20
3.344
3.884
0.570
-0.048
DD_DT9DT10:DA20DA21_EE
6
1.453
-2.517
33.397
-0.733
-0.741
3.342
34.628
D
D
10
11
-4.334
E
E
20
19
3.314
-2.577
-0.689
-0.303
DD_DT10DC11:DG19DA20_EE
7
-0.837
1.407
34.525
-0.105
1.026
3.406
32.523
D
D
11
12
10.096
E
E
19
18
3.475
5.624
-0.632
-0.313
DD_DC11DT12:DA18DG19_EE
8
-2.103
3.775
31.978
-1.602
0.738
3.424
37.444
D
D
12
13
7.578
E
E
18
17
3.479
4.851
0.337
-0.089
DD_DT12DC13:DG17DA18_EE
9
-1.569
2.450
37.108
-0.813
-0.743
3.404
35.338
D
D
13
14
16.279
E
E
17
16
3.327
9.729
0.409
0.655
DD_DC13DG14:DC16DG17_EE
10
5.008
-8.379
33.652
-0.439
0.106
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-07-27
1
1
2008-04-29
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
sequence
The author maintains that the Asp137 is
an error in the sequence database. This
residue does not exist.
RCSB
Y
RCSB
2003-06-10
REL
REL
ZN
ZINC ION
GOL
GLYCEROL
HOH
water
synyhetic
sample
synthetic
sample
1NNJ
PDB
experimental model
ZN
300
4
ZN
ZN
300
A
GOL
1
5
GOL
GOL
1001
A
GOL
3
5
GOL
GOL
1003
A
GOL
4
5
GOL
GOL
1004
A
WAT
112
6
HOH
HOH
112
D
WAT
144
6
HOH
HOH
144
D
WAT
182
6
HOH
HOH
182
D
WAT
183
6
HOH
HOH
183
D
WAT
185
6
HOH
HOH
185
D
WAT
187
6
HOH
HOH
187
D
WAT
191
6
HOH
HOH
191
D
WAT
192
6
HOH
HOH
192
D
WAT
193
6
HOH
HOH
193
D
WAT
194
6
HOH
HOH
194
D
WAT
195
6
HOH
HOH
195
D
WAT
197
6
HOH
HOH
197
D
WAT
203
6
HOH
HOH
203
D
WAT
204
6
HOH
HOH
204
D
WAT
205
6
HOH
HOH
205
D
WAT
214
6
HOH
HOH
214
D
WAT
226
6
HOH
HOH
226
D
WAT
227
6
HOH
HOH
227
D
WAT
229
6
HOH
HOH
229
D
WAT
235
6
HOH
HOH
235
D
WAT
242
6
HOH
HOH
242
D
WAT
252
6
HOH
HOH
252
D
WAT
256
6
HOH
HOH
256
D
WAT
273
6
HOH
HOH
273
D
WAT
282
6
HOH
HOH
282
D
WAT
284
6
HOH
HOH
284
D
WAT
199
6
HOH
HOH
199
E
WAT
202
6
HOH
HOH
202
E
WAT
206
6
HOH
HOH
206
E
WAT
224
6
HOH
HOH
224
E
WAT
230
6
HOH
HOH
230
E
WAT
250
6
HOH
HOH
250
E
WAT
259
6
HOH
HOH
259
E
WAT
260
6
HOH
HOH
260
E
WAT
263
6
HOH
HOH
263
E
WAT
267
6
HOH
HOH
267
E
WAT
268
6
HOH
HOH
268
E
WAT
269
6
HOH
HOH
269
E
WAT
274
6
HOH
HOH
274
E
WAT
276
6
HOH
HOH
276
E
WAT
286
6
HOH
HOH
286
E
WAT
301
6
HOH
HOH
301
E
WAT
305
6
HOH
HOH
305
E
WAT
1
6
HOH
HOH
1005
A
WAT
2
6
HOH
HOH
1006
A
WAT
3
6
HOH
HOH
1007
A
WAT
4
6
HOH
HOH
1008
A
WAT
5
6
HOH
HOH
1009
A
WAT
6
6
HOH
HOH
1010
A
WAT
7
6
HOH
HOH
1011
A
WAT
8
6
HOH
HOH
1012
A
WAT
9
6
HOH
HOH
1013
A
WAT
10
6
HOH
HOH
1014
A
WAT
11
6
HOH
HOH
1015
A
WAT
12
6
HOH
HOH
1016
A
WAT
13
6
HOH
HOH
1017
A
WAT
14
6
HOH
HOH
1018
A
WAT
15
6
HOH
HOH
1019
A
WAT
16
6
HOH
HOH
1020
A
WAT
17
6
HOH
HOH
1021
A
WAT
18
6
HOH
HOH
1022
A
WAT
19
6
HOH
HOH
1023
A
WAT
20
6
HOH
HOH
1024
A
WAT
21
6
HOH
HOH
1025
A
WAT
22
6
HOH
HOH
1026
A
WAT
23
6
HOH
HOH
1027
A
WAT
24
6
HOH
HOH
1028
A
WAT
25
6
HOH
HOH
1029
A
WAT
26
6
HOH
HOH
1030
A
WAT
27
6
HOH
HOH
1031
A
WAT
28
6
HOH
HOH
1032
A
WAT
29
6
HOH
HOH
1033
A
WAT
30
6
HOH
HOH
1034
A
WAT
31
6
HOH
HOH
1035
A
WAT
32
6
HOH
HOH
1036
A
WAT
33
6
HOH
HOH
1037
A
WAT
34
6
HOH
HOH
1038
A
WAT
35
6
HOH
HOH
1039
A
WAT
36
6
HOH
HOH
1040
A
WAT
37
6
HOH
HOH
1041
A
WAT
38
6
HOH
HOH
1042
A
WAT
39
6
HOH
HOH
1043
A
WAT
40
6
HOH
HOH
1044
A
WAT
41
6
HOH
HOH
1045
A
WAT
43
6
HOH
HOH
1046
A
WAT
44
6
HOH
HOH
1047
A
WAT
45
6
HOH
HOH
1048
A
WAT
46
6
HOH
HOH
1049
A
WAT
47
6
HOH
HOH
1050
A
WAT
48
6
HOH
HOH
1051
A
WAT
49
6
HOH
HOH
1052
A
WAT
50
6
HOH
HOH
1053
A
WAT
51
6
HOH
HOH
1054
A
WAT
52
6
HOH
HOH
1055
A
WAT
53
6
HOH
HOH
1056
A
WAT
54
6
HOH
HOH
1057
A
WAT
55
6
HOH
HOH
1058
A
WAT
56
6
HOH
HOH
1059
A
WAT
57
6
HOH
HOH
1060
A
WAT
58
6
HOH
HOH
1061
A
WAT
59
6
HOH
HOH
1062
A
WAT
60
6
HOH
HOH
1063
A
WAT
61
6
HOH
HOH
1064
A
WAT
62
6
HOH
HOH
1065
A
WAT
63
6
HOH
HOH
1066
A
WAT
64
6
HOH
HOH
1067
A
WAT
65
6
HOH
HOH
1068
A
WAT
66
6
HOH
HOH
1069
A
WAT
67
6
HOH
HOH
1070
A
WAT
68
6
HOH
HOH
1071
A
WAT
69
6
HOH
HOH
1072
A
WAT
70
6
HOH
HOH
1073
A
WAT
71
6
HOH
HOH
1074
A
WAT
72
6
HOH
HOH
1075
A
WAT
73
6
HOH
HOH
1076
A
WAT
74
6
HOH
HOH
1077
A
WAT
75
6
HOH
HOH
1078
A
WAT
76
6
HOH
HOH
1079
A
WAT
77
6
HOH
HOH
1080
A
WAT
78
6
HOH
HOH
1081
A
WAT
79
6
HOH
HOH
1082
A
WAT
80
6
HOH
HOH
1083
A
WAT
81
6
HOH
HOH
1084
A
WAT
82
6
HOH
HOH
1085
A
WAT
83
6
HOH
HOH
1086
A
WAT
84
6
HOH
HOH
1087
A
WAT
85
6
HOH
HOH
1088
A
WAT
86
6
HOH
HOH
1089
A
WAT
87
6
HOH
HOH
1090
A
WAT
88
6
HOH
HOH
1091
A
WAT
89
6
HOH
HOH
1092
A
WAT
90
6
HOH
HOH
1093
A
WAT
91
6
HOH
HOH
1094
A
WAT
92
6
HOH
HOH
1095
A
WAT
93
6
HOH
HOH
1096
A
WAT
94
6
HOH
HOH
1097
A
WAT
95
6
HOH
HOH
1098
A
WAT
96
6
HOH
HOH
1099
A
WAT
97
6
HOH
HOH
1100
A
WAT
98
6
HOH
HOH
1101
A
WAT
99
6
HOH
HOH
1102
A
WAT
100
6
HOH
HOH
1103
A
WAT
101
6
HOH
HOH
1104
A
WAT
102
6
HOH
HOH
1105
A
WAT
103
6
HOH
HOH
1106
A
WAT
104
6
HOH
HOH
1107
A
WAT
105
6
HOH
HOH
1108
A
WAT
106
6
HOH
HOH
1109
A
WAT
107
6
HOH
HOH
1110
A
WAT
108
6
HOH
HOH
1111
A
WAT
109
6
HOH
HOH
1112
A
WAT
110
6
HOH
HOH
1113
A
WAT
111
6
HOH
HOH
1114
A
WAT
113
6
HOH
HOH
1115
A
WAT
114
6
HOH
HOH
1116
A
WAT
115
6
HOH
HOH
1117
A
WAT
116
6
HOH
HOH
1118
A
WAT
117
6
HOH
HOH
1119
A
WAT
118
6
HOH
HOH
1120
A
WAT
119
6
HOH
HOH
1121
A
WAT
120
6
HOH
HOH
1122
A
WAT
121
6
HOH
HOH
1123
A
WAT
122
6
HOH
HOH
1124
A
WAT
123
6
HOH
HOH
1125
A
WAT
124
6
HOH
HOH
1126
A
WAT
125
6
HOH
HOH
1127
A
WAT
126
6
HOH
HOH
1128
A
WAT
127
6
HOH
HOH
1129
A
WAT
128
6
HOH
HOH
1130
A
WAT
129
6
HOH
HOH
1131
A
WAT
130
6
HOH
HOH
1132
A
WAT
131
6
HOH
HOH
1133
A
WAT
132
6
HOH
HOH
1134
A
WAT
133
6
HOH
HOH
1135
A
WAT
134
6
HOH
HOH
1136
A
WAT
135
6
HOH
HOH
1137
A
WAT
136
6
HOH
HOH
1138
A
WAT
137
6
HOH
HOH
1139
A
WAT
138
6
HOH
HOH
1140
A
WAT
139
6
HOH
HOH
1141
A
WAT
140
6
HOH
HOH
1142
A
WAT
141
6
HOH
HOH
1143
A
WAT
142
6
HOH
HOH
1144
A
WAT
143
6
HOH
HOH
1145
A
WAT
145
6
HOH
HOH
1146
A
WAT
146
6
HOH
HOH
1147
A
WAT
147
6
HOH
HOH
1148
A
WAT
148
6
HOH
HOH
1149
A
WAT
149
6
HOH
HOH
1150
A
WAT
150
6
HOH
HOH
1151
A
WAT
151
6
HOH
HOH
1152
A
WAT
152
6
HOH
HOH
1153
A
WAT
153
6
HOH
HOH
1154
A
WAT
154
6
HOH
HOH
1155
A
WAT
155
6
HOH
HOH
1156
A
WAT
156
6
HOH
HOH
1157
A
WAT
157
6
HOH
HOH
1158
A
WAT
158
6
HOH
HOH
1159
A
WAT
159
6
HOH
HOH
1160
A
WAT
160
6
HOH
HOH
1161
A
WAT
161
6
HOH
HOH
1162
A
WAT
162
6
HOH
HOH
1163
A
WAT
163
6
HOH
HOH
1164
A
WAT
164
6
HOH
HOH
1165
A
WAT
165
6
HOH
HOH
1166
A
WAT
166
6
HOH
HOH
1167
A
WAT
167
6
HOH
HOH
1168
A
WAT
168
6
HOH
HOH
1169
A
WAT
169
6
HOH
HOH
1170
A
WAT
170
6
HOH
HOH
1171
A
WAT
171
6
HOH
HOH
1172
A
WAT
172
6
HOH
HOH
1173
A
WAT
173
6
HOH
HOH
1174
A
WAT
174
6
HOH
HOH
1175
A
WAT
175
6
HOH
HOH
1176
A
WAT
176
6
HOH
HOH
1177
A
WAT
177
6
HOH
HOH
1178
A
WAT
178
6
HOH
HOH
1179
A
WAT
179
6
HOH
HOH
1180
A
WAT
180
6
HOH
HOH
1181
A
WAT
181
6
HOH
HOH
1182
A
WAT
184
6
HOH
HOH
1183
A
WAT
186
6
HOH
HOH
1184
A
WAT
188
6
HOH
HOH
1185
A
WAT
189
6
HOH
HOH
1186
A
WAT
190
6
HOH
HOH
1187
A
WAT
196
6
HOH
HOH
1188
A
WAT
200
6
HOH
HOH
1189
A
WAT
201
6
HOH
HOH
1190
A
WAT
207
6
HOH
HOH
1191
A
WAT
208
6
HOH
HOH
1192
A
WAT
209
6
HOH
HOH
1193
A
WAT
210
6
HOH
HOH
1194
A
WAT
211
6
HOH
HOH
1195
A
WAT
212
6
HOH
HOH
1196
A
WAT
213
6
HOH
HOH
1197
A
WAT
215
6
HOH
HOH
1198
A
WAT
216
6
HOH
HOH
1199
A
WAT
217
6
HOH
HOH
1200
A
WAT
218
6
HOH
HOH
1201
A
WAT
219
6
HOH
HOH
1202
A
WAT
220
6
HOH
HOH
1203
A
WAT
221
6
HOH
HOH
1204
A
WAT
222
6
HOH
HOH
1205
A
WAT
223
6
HOH
HOH
1206
A
WAT
225
6
HOH
HOH
1207
A
WAT
228
6
HOH
HOH
1208
A
WAT
231
6
HOH
HOH
1209
A
WAT
232
6
HOH
HOH
1210
A
WAT
233
6
HOH
HOH
1211
A
WAT
234
6
HOH
HOH
1212
A
WAT
236
6
HOH
HOH
1213
A
WAT
237
6
HOH
HOH
1214
A
WAT
238
6
HOH
HOH
1215
A
WAT
239
6
HOH
HOH
1216
A
WAT
240
6
HOH
HOH
1217
A
WAT
241
6
HOH
HOH
1218
A
WAT
243
6
HOH
HOH
1219
A
WAT
244
6
HOH
HOH
1220
A
WAT
245
6
HOH
HOH
1221
A
WAT
246
6
HOH
HOH
1222
A
WAT
247
6
HOH
HOH
1223
A
WAT
248
6
HOH
HOH
1224
A
WAT
249
6
HOH
HOH
1225
A
WAT
251
6
HOH
HOH
1226
A
WAT
253
6
HOH
HOH
1227
A
WAT
254
6
HOH
HOH
1228
A
WAT
255
6
HOH
HOH
1229
A
WAT
257
6
HOH
HOH
1230
A
WAT
258
6
HOH
HOH
1231
A
WAT
261
6
HOH
HOH
1232
A
WAT
262
6
HOH
HOH
1233
A
WAT
264
6
HOH
HOH
1234
A
WAT
265
6
HOH
HOH
1235
A
WAT
266
6
HOH
HOH
1236
A
WAT
270
6
HOH
HOH
1237
A
WAT
271
6
HOH
HOH
1238
A
WAT
272
6
HOH
HOH
1239
A
WAT
275
6
HOH
HOH
1240
A
WAT
277
6
HOH
HOH
1241
A
WAT
278
6
HOH
HOH
1242
A
WAT
279
6
HOH
HOH
1243
A
WAT
280
6
HOH
HOH
1244
A
WAT
281
6
HOH
HOH
1245
A
WAT
283
6
HOH
HOH
1246
A
WAT
285
6
HOH
HOH
1247
A
WAT
287
6
HOH
HOH
1248
A
WAT
288
6
HOH
HOH
1249
A
WAT
289
6
HOH
HOH
1250
A
WAT
290
6
HOH
HOH
1251
A
WAT
291
6
HOH
HOH
1252
A
WAT
292
6
HOH
HOH
1253
A
WAT
293
6
HOH
HOH
1254
A
WAT
294
6
HOH
HOH
1255
A
WAT
295
6
HOH
HOH
1256
A
WAT
296
6
HOH
HOH
1257
A
WAT
297
6
HOH
HOH
1258
A
WAT
298
6
HOH
HOH
1259
A
WAT
299
6
HOH
HOH
1260
A
WAT
300
6
HOH
HOH
1261
A
WAT
302
6
HOH
HOH
1262
A
WAT
303
6
HOH
HOH
1263
A
WAT
304
6
HOH
HOH
1264
A
WAT
306
6
HOH
HOH
1265
A
WAT
307
6
HOH
HOH
1266
A
WAT
308
6
HOH
HOH
1267
A
CYT
1
n
1
DC
1
D
THY
2
n
2
DT
2
D
CYT
3
n
3
DC
3
D
THY
4
n
4
DT
4
D
THY
5
n
5
DT
5
D
THY
6
n
6
DT
6
D
3DR
7
n
7
3DR
7
D
THY
8
n
8
DT
8
D
THY
9
n
9
DT
9
D
THY
10
n
10
DT
10
D
CYT
11
n
11
DC
11
D
THY
12
n
12
DT
12
D
CYT
13
n
13
DC
13
D
GUA
14
n
14
DG
14
D
GUA
15
n
1
DG
15
E
CYT
16
n
2
DC
16
E
GUA
17
n
3
DG
17
E
ADE
18
n
4
DA
18
E
GUA
19
n
5
DG
19
E
ADE
20
n
6
DA
20
E
ADE
21
n
7
DA
21
E
ADE
22
n
8
DA
22
E
CYT
23
n
9
DC
23
E
ADE
24
n
10
DA
24
E
ADE
25
n
11
DA
25
E
ADE
26
n
12
DA
26
E
GUA
27
n
13
DG
27
E
ADE
28
n
14
DA
28
E
PRO
1
n
1
PRO
1
A
GLU
2
n
2
GLU
2
A
LEU
3
n
3
LEU
3
A
PRO
4
n
4
PRO
4
A
GLU
5
n
5
GLU
5
A
VAL
6
n
6
VAL
6
A
GLU
7
n
7
GLU
7
A
THR
8
n
8
THR
8
A
VAL
9
n
9
VAL
9
A
ARG
10
n
10
ARG
10
A
ARG
11
n
11
ARG
11
A
GLU
12
n
12
GLU
12
A
LEU
13
n
13
LEU
13
A
GLU
14
n
14
GLU
14
A
LYS
15
n
15
LYS
15
A
ARG
16
n
16
ARG
16
A
ILE
17
n
17
ILE
17
A
VAL
18
n
18
VAL
18
A
GLY
19
n
19
GLY
19
A
GLN
20
n
20
GLN
20
A
LYS
21
n
21
LYS
21
A
ILE
22
n
22
ILE
22
A
ILE
23
n
23
ILE
23
A
SER
24
n
24
SER
24
A
ILE
25
n
25
ILE
25
A
GLU
26
n
26
GLU
26
A
ALA
27
n
27
ALA
27
A
THR
28
n
28
THR
28
A
TYR
29
n
29
TYR
29
A
PRO
30
n
30
PRO
30
A
ARG
31
n
31
ARG
31
A
MET
32
n
32
MET
32
A
VAL
33
n
33
VAL
33
A
LEU
34
n
34
LEU
34
A
THR
35
n
35
THR
35
A
GLY
36
n
36
GLY
36
A
PHE
37
n
37
PHE
37
A
GLU
38
n
38
GLU
38
A
GLN
39
n
39
GLN
39
A
LEU
40
n
40
LEU
40
A
LYS
41
n
41
LYS
41
A
LYS
42
n
42
LYS
42
A
GLU
43
n
43
GLU
43
A
LEU
44
n
44
LEU
44
A
THR
45
n
45
THR
45
A
GLY
46
n
46
GLY
46
A
LYS
47
n
47
LYS
47
A
THR
48
n
48
THR
48
A
ILE
49
n
49
ILE
49
A
GLN
50
n
50
GLN
50
A
GLY
51
n
51
GLY
51
A
ILE
52
n
52
ILE
52
A
SER
53
n
53
SER
53
A
ARG
54
n
54
ARG
54
A
ARG
55
n
55
ARG
55
A
GLY
56
n
56
GLY
56
A
LYS
57
n
57
LYS
57
A
TYR
58
n
58
TYR
58
A
LEU
59
n
59
LEU
59
A
ILE
60
n
60
ILE
60
A
PHE
61
n
61
PHE
61
A
GLU
62
n
62
GLU
62
A
ILE
63
n
63
ILE
63
A
GLY
64
n
64
GLY
64
A
ALA
65
n
65
ASP
65
A
ASP
66
n
66
ASP
66
A
PHE
67
n
67
PHE
67
A
ARG
68
n
68
ARG
68
A
LEU
69
n
69
LEU
69
A
ILE
70
n
70
ILE
70
A
SER
71
n
71
SER
71
A
HIS
72
n
72
HIS
72
A
LEU
73
n
73
LEU
73
A
ARG
74
n
74
ARG
74
A
MET
75
n
75
MET
75
A
GLU
76
n
76
GLU
76
A
GLY
77
n
77
GLY
77
A
LYS
78
n
78
LYS
78
A
TYR
79
n
79
TYR
79
A
ARG
80
n
80
ARG
80
A
LEU
81
n
81
LEU
81
A
ALA
82
n
82
ALA
82
A
THR
83
n
83
THR
83
A
LEU
84
n
84
LEU
84
A
ASP
85
n
85
ASP
85
A
ALA
86
n
86
ALA
86
A
PRO
87
n
87
PRO
87
A
ALA
88
n
88
ARG
88
A
GLU
89
n
89
GLU
89
A
LYS
90
n
90
LYS
90
A
HIS
91
n
91
HIS
91
A
ASP
92
n
92
ASP
92
A
HIS
93
n
93
HIS
93
A
LEU
94
n
94
LEU
94
A
THR
95
n
95
THR
95
A
MET
96
n
96
MET
96
A
LYS
97
n
97
LYS
97
A
PHE
98
n
98
PHE
98
A
ALA
99
n
99
ALA
99
A
ASP
100
n
100
ASP
100
A
GLY
101
n
101
GLY
101
A
GLN
102
n
102
GLN
102
A
LEU
103
n
103
LEU
103
A
ILE
104
n
104
ILE
104
A
TYR
105
n
105
TYR
105
A
ALA
106
n
106
ALA
106
A
ASP
107
n
107
ASP
107
A
VAL
108
n
108
VAL
108
A
ARG
109
n
109
ARG
109
A
LYS
110
n
110
LYS
110
A
PHE
111
n
111
PHE
111
A
GLY
112
n
112
GLY
112
A
THR
113
n
113
THR
113
A
TRP
114
n
114
TRP
114
A
GLU
115
n
115
GLU
115
A
LEU
116
n
116
LEU
116
A
ILE
117
n
117
ILE
117
A
SER
118
n
118
SER
118
A
THR
119
n
119
THR
119
A
ASP
120
n
120
ASP
120
A
GLN
121
n
121
GLN
121
A
VAL
122
n
122
VAL
122
A
LEU
123
n
123
LEU
123
A
PRO
124
n
124
PRO
124
A
TYR
125
n
125
TYR
125
A
PHE
126
n
126
PHE
126
A
LEU
127
n
127
LEU
127
A
LYS
128
n
128
LYS
128
A
LYS
129
n
129
LYS
129
A
LYS
130
n
130
LYS
130
A
ILE
131
n
131
ILE
131
A
GLY
132
n
132
GLY
132
A
PRO
133
n
133
PRO
133
A
GLU
134
n
134
GLU
134
A
PRO
135
n
135
PRO
135
A
THR
136
n
136
THR
136
A
TYR
137
n
137
TYR
137
A
GLU
138
n
138
GLU
138
A
ASP
139
n
139
ASP
139
A
PHE
140
n
140
PHE
140
A
ASP
141
n
141
ASP
141
A
GLU
142
n
142
GLU
142
A
LYS
143
n
143
LYS
143
A
LEU
144
n
144
LEU
144
A
PHE
145
n
145
PHE
145
A
ARG
146
n
146
ARG
146
A
GLU
147
n
147
GLU
147
A
LYS
148
n
148
LYS
148
A
LEU
149
n
149
LEU
149
A
ARG
150
n
150
ARG
150
A
LYS
151
n
151
LYS
151
A
SER
152
n
152
SER
152
A
THR
153
n
153
THR
153
A
LYS
154
n
154
LYS
154
A
LYS
155
n
155
LYS
155
A
ILE
156
n
156
ILE
156
A
LYS
157
n
157
LYS
157
A
PRO
158
n
158
PRO
158
A
TYR
159
n
159
TYR
159
A
LEU
160
n
160
LEU
160
A
LEU
161
n
161
LEU
161
A
GLU
162
n
162
GLU
162
A
GLN
163
n
163
GLN
163
A
THR
164
n
164
THR
164
A
LEU
165
n
165
LEU
165
A
VAL
166
n
166
VAL
166
A
ALA
167
n
167
ALA
167
A
GLY
168
n
168
GLY
168
A
LEU
169
n
169
LEU
169
A
GLY
170
n
170
GLY
170
A
ASN
171
n
171
ASN
171
A
ILE
172
n
172
ILE
172
A
TYR
173
n
173
TYR
173
A
VAL
174
n
174
VAL
174
A
ASP
175
n
175
ASP
175
A
GLU
176
n
176
GLU
176
A
VAL
177
n
177
VAL
177
A
LEU
178
n
178
LEU
178
A
TRP
179
n
179
TRP
179
A
LEU
180
n
180
LEU
180
A
ALA
181
n
181
ALA
181
A
LYS
182
n
182
LYS
182
A
ILE
183
n
183
ILE
183
A
HIS
184
n
184
HIS
184
A
PRO
185
n
185
PRO
185
A
GLU
186
n
186
GLU
186
A
LYS
187
n
187
LYS
187
A
GLU
188
n
188
GLU
188
A
THR
189
n
189
THR
189
A
ASN
190
n
190
ASN
190
A
GLN
191
n
191
GLN
191
A
LEU
192
n
192
LEU
192
A
ILE
193
n
193
ILE
193
A
GLU
194
n
194
GLU
194
A
SER
195
n
195
SER
195
A
SER
196
n
196
SER
196
A
ILE
197
n
197
ILE
197
A
HIS
198
n
198
HIS
198
A
LEU
199
n
199
LEU
199
A
LEU
200
n
200
LEU
200
A
HIS
201
n
201
HIS
201
A
ASP
202
n
202
ASP
202
A
SER
203
n
203
SER
203
A
ILE
204
n
204
ILE
204
A
ILE
205
n
205
ILE
205
A
GLU
206
n
206
GLU
206
A
ILE
207
n
207
ILE
207
A
LEU
208
n
208
LEU
208
A
GLN
209
n
209
GLN
209
A
LYS
210
n
210
LYS
210
A
ALA
211
n
211
ALA
211
A
ILE
212
n
212
ILE
212
A
LYS
213
n
213
LYS
213
A
LEU
214
n
214
LEU
214
A
GLY
215
n
215
GLY
215
A
GLY
216
n
216
GLY
216
A
SER
217
n
217
SER
217
A
SER
218
n
218
SER
218
A
ILE
219
n
219
ILE
219
A
GLY
220
n
220
ARG
220
A
GLY
221
n
221
THR
221
A
GLY
222
n
222
TYR
222
A
SER
223
n
223
SER
223
A
ALA
224
n
224
ALA
224
A
LEU
225
n
225
LEU
225
A
GLY
226
n
226
GLY
226
A
SER
227
n
227
SER
227
A
THR
228
n
228
THR
228
A
GLY
229
n
229
GLY
229
A
LYS
230
n
230
LYS
230
A
MET
231
n
231
MET
231
A
GLN
232
n
232
GLN
232
A
ASN
233
n
233
ASN
233
A
GLU
234
n
234
GLU
234
A
LEU
235
n
235
LEU
235
A
GLN
236
n
236
GLN
236
A
VAL
237
n
237
VAL
237
A
TYR
238
n
238
TYR
238
A
GLY
239
n
239
GLY
239
A
LYS
240
n
240
LYS
240
A
THR
241
n
241
THR
241
A
GLY
242
n
242
GLY
242
A
GLU
243
n
243
GLU
243
A
LYS
244
n
244
LYS
244
A
CYS
245
n
245
CYS
245
A
SER
246
n
246
SER
246
A
ARG
247
n
247
ARG
247
A
CYS
248
n
248
CYS
248
A
GLY
249
n
249
GLY
249
A
ALA
250
n
250
ALA
250
A
GLU
251
n
251
GLU
251
A
ILE
252
n
252
ILE
252
A
GLN
253
n
253
GLN
253
A
LYS
254
n
254
LYS
254
A
ILE
255
n
255
ILE
255
A
LYS
256
n
256
LYS
256
A
VAL
257
n
257
VAL
257
A
ALA
258
n
258
ALA
258
A
GLY
259
n
259
GLY
259
A
ARG
260
n
260
ARG
260
A
GLY
261
n
261
GLY
261
A
THR
262
n
262
THR
262
A
HIS
263
n
263
HIS
263
A
PHE
264
n
264
PHE
264
A
CYS
265
n
265
CYS
265
A
PRO
266
n
266
PRO
266
A
VAL
267
n
267
VAL
267
A
CYS
268
n
268
CYS
268
A
GLN
269
n
269
GLN
269
A
GLN
270
n
270
GLN
270
A
LYS
271
n
271
LYS
271
A
author_defined_assembly
3
trimeric
A
CYS
245
C
SG
CYS
245
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
248
C
SG
CYS
248
1_555
112.1
A
CYS
245
C
SG
CYS
245
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
265
C
SG
CYS
265
1_555
111.8
A
CYS
248
C
SG
CYS
248
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
265
C
SG
CYS
265
1_555
95.6
A
CYS
245
C
SG
CYS
245
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
268
C
SG
CYS
268
1_555
107.8
A
CYS
248
C
SG
CYS
248
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
268
C
SG
CYS
268
1_555
113.8
A
CYS
265
C
SG
CYS
265
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
268
C
SG
CYS
268
1_555
115.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
24
C
N
SER
24
A
O
LYS
97
C
O
LYS
97
A
N
MET
96
C
N
MET
96
A
O
LEU
103
C
O
LEU
103
A
O
ALA
106
C
O
ALA
106
A
N
LYS
78
C
N
LYS
78
A
N
SER
53
C
N
SER
53
A
O
ILE
60
C
O
ILE
60
A
N
LEU
59
C
N
LEU
59
A
O
SER
71
C
O
SER
71
A
N
ILE
70
C
N
ILE
70
A
O
GLU
115
C
O
GLU
115
A
N
ILE
255
C
N
ILE
255
A
O
THR
262
C
O
THR
262
1
A
CG
ASP
65
C
CG
ASP
65
1
Y
1
A
OD1
ASP
65
C
OD1
ASP
65
1
Y
1
A
OD2
ASP
65
C
OD2
ASP
65
1
Y
1
A
CG
ARG
88
C
CG
ARG
88
1
Y
1
A
CD
ARG
88
C
CD
ARG
88
1
Y
1
A
NE
ARG
88
C
NE
ARG
88
1
Y
1
A
CZ
ARG
88
C
CZ
ARG
88
1
Y
1
A
NH1
ARG
88
C
NH1
ARG
88
1
Y
1
A
NH2
ARG
88
C
NH2
ARG
88
1
Y
1
A
CB
ARG
220
C
CB
ARG
220
1
Y
1
A
CG
ARG
220
C
CG
ARG
220
1
Y
1
A
CD
ARG
220
C
CD
ARG
220
1
Y
1
A
NE
ARG
220
C
NE
ARG
220
1
Y
1
A
CZ
ARG
220
C
CZ
ARG
220
1
Y
1
A
NH1
ARG
220
C
NH1
ARG
220
1
Y
1
A
NH2
ARG
220
C
NH2
ARG
220
1
Y
1
A
CB
THR
221
C
CB
THR
221
1
Y
1
A
OG1
THR
221
C
OG1
THR
221
1
Y
1
A
CG2
THR
221
C
CG2
THR
221
1
Y
1
A
CB
TYR
222
C
CB
TYR
222
1
Y
1
A
CG
TYR
222
C
CG
TYR
222
1
Y
1
A
CD1
TYR
222
C
CD1
TYR
222
1
Y
1
A
CD2
TYR
222
C
CD2
TYR
222
1
Y
1
A
CE1
TYR
222
C
CE1
TYR
222
1
Y
1
A
CE2
TYR
222
C
CE2
TYR
222
1
Y
1
A
CZ
TYR
222
C
CZ
TYR
222
1
Y
1
A
OH
TYR
222
C
OH
TYR
222
1
Y
1
A
ARG
74
49.78
-127.35
1
A
ARG
74
48.17
-127.35
1
A
ARG
220
116.16
-125.28
1
A
THR
221
64.84
126.83
1
A
TYR
222
-66.83
-135.17
1
A
VAL
237
-136.62
-39.90
1
A
GLN
269
-116.95
78.57
30.9
0.2162
0.1962
1.95
30
2158
44852
43716
97.5
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
1NNJ
Engh & Huber
1.95
30
306
3042
19
557
2160
0.2216
0.1871
1.97
24
29.042
1.95
77
1PM5
43785
43717
0
0.045
1
10.2
6.7
97.5
1.95
2.06
4.0
0.147
1
3.6
97.5
data reduction
MOSFLM
data scaling
SCALA
phasing
AMoRE
refinement
CNS
VERSION 1.1
data scaling
CCP4
(SCALA)
Crystal structure of wild type Lactococcus lactis Fpg complexed to a tetrahydrofuran containing DNA
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
the biological assembly corresponds to one Fpg molecule and one DNA duplex
A
GLU
2
C
GLU
2
HELX_P
A
VAL
18
C
VAL
18
1
1
17
A
TYR
29
C
TYR
29
HELX_P
A
VAL
33
C
VAL
33
5
2
5
A
GLY
36
C
GLY
36
HELX_P
A
THR
45
C
THR
45
1
3
10
A
GLN
121
C
GLN
121
HELX_P
A
LYS
130
C
LYS
130
1
4
10
A
ASP
141
C
ASP
141
HELX_P
A
SER
152
C
SER
152
1
5
12
A
LYS
155
C
LYS
155
HELX_P
A
GLU
162
C
GLU
162
1
6
8
A
GLY
170
C
GLY
170
HELX_P
A
ALA
181
C
ALA
181
1
7
12
A
GLU
188
C
GLU
188
HELX_P
A
LEU
192
C
LEU
192
5
8
5
A
ILE
193
C
ILE
193
HELX_P
A
LEU
214
C
LEU
214
1
9
22
A
LYS
230
C
LYS
230
HELX_P
A
LEU
235
C
LEU
235
5
10
6
covale
1.602
both
D
DT
6
A
O3'
DT
6
1_555
D
3DR
7
A
P
3DR
7
1_555
covale
1.598
both
D
3DR
7
A
O3'
3DR
7
1_555
D
DT
8
A
P
DT
8
1_555
metalc
2.389
A
CYS
245
C
SG
CYS
245
1_555
A
ZN
300
D
ZN
ZN
1_555
metalc
2.472
A
CYS
248
C
SG
CYS
248
1_555
A
ZN
300
D
ZN
ZN
1_555
metalc
2.215
A
CYS
265
C
SG
CYS
265
1_555
A
ZN
300
D
ZN
ZN
1_555
metalc
2.363
A
CYS
268
C
SG
CYS
268
1_555
A
ZN
300
D
ZN
ZN
1_555
hydrog
WATSON-CRICK
D
DT
2
A
N3
DT
2
1_555
E
DA
28
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
D
DT
2
A
O4
DT
2
1_555
E
DA
28
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
D
DC
3
A
N3
DC
3
1_555
E
DG
27
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
D
DC
3
A
N4
DC
3
1_555
E
DG
27
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
D
DC
3
A
O2
DC
3
1_555
E
DG
27
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
D
DT
4
A
N3
DT
4
1_555
E
DA
26
B
N1
DA
12
1_555
hydrog
WATSON-CRICK
D
DT
4
A
O4
DT
4
1_555
E
DA
26
B
N6
DA
12
1_555
hydrog
WATSON-CRICK
D
DT
5
A
N3
DT
5
1_555
E
DA
25
B
N1
DA
11
1_555
hydrog
WATSON-CRICK
D
DT
5
A
O4
DT
5
1_555
E
DA
25
B
N6
DA
11
1_555
hydrog
WATSON-CRICK
D
DT
6
A
N3
DT
6
1_555
E
DA
24
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
D
DT
6
A
O4
DT
6
1_555
E
DA
24
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
D
DT
8
A
N3
DT
8
1_555
E
DA
22
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
D
DT
8
A
O4
DT
8
1_555
E
DA
22
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
D
DT
9
A
N3
DT
9
1_555
E
DA
21
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
D
DT
9
A
O4
DT
9
1_555
E
DA
21
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
D
DT
10
A
N3
DT
10
1_555
E
DA
20
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
D
DT
10
A
O4
DT
10
1_555
E
DA
20
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
D
DC
11
A
N3
DC
11
1_555
E
DG
19
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
D
DC
11
A
N4
DC
11
1_555
E
DG
19
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
D
DC
11
A
O2
DC
11
1_555
E
DG
19
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
D
DT
12
A
N3
DT
12
1_555
E
DA
18
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
D
DT
12
A
O4
DT
12
1_555
E
DA
18
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
D
DC
13
A
N3
DC
13
1_555
E
DG
17
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
13
A
N4
DC
13
1_555
E
DG
17
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
D
DC
13
A
O2
DC
13
1_555
E
DG
17
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
D
DG
14
A
N1
DG
14
1_555
E
DC
16
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
14
A
N2
DG
14
1_555
E
DC
16
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
14
A
O6
DG
14
1_555
E
DC
16
B
N4
DC
2
1_555
hydrolase/DNA
DNA repair, Fpg, MutM, abasic site, hydrolase-DNA COMPLEX
FPG_LACLC
UNP
3
2
P42371
PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYR
LATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYDEDFDEKLFREKLRKSTKKIKPY
LLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYG
KTGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK
1PM5
PDB
1
1PM5
1PM5
PDB
2
1PM5
2
273
1PM5
1
271
P42371
A
1
1
271
1
14
1PM5
1
14
1PM5
D
2
1
14
15
28
1PM5
15
28
1PM5
E
3
1
14
1
ASP
SEE REMARK 999
1PM5
A
P42371
UNP
138
4
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
24
C
SER
24
A
ALA
27
C
ALA
27
A
ASP
92
C
ASP
92
A
LYS
97
C
LYS
97
A
GLN
102
C
GLN
102
A
ALA
106
C
ALA
106
A
LYS
78
C
LYS
78
A
ALA
82
C
ALA
82
A
ILE
49
C
ILE
49
A
ARG
55
C
ARG
55
A
TYR
58
C
TYR
58
A
ILE
63
C
ILE
63
A
PHE
67
C
PHE
67
A
HIS
72
C
HIS
72
A
THR
113
C
THR
113
A
SER
118
C
SER
118
A
GLN
253
C
GLN
253
A
VAL
257
C
VAL
257
A
ARG
260
C
ARG
260
A
PHE
264
C
PHE
264
BINDING SITE FOR RESIDUE ZN A 300
A
ZN
300
Software
4
BINDING SITE FOR RESIDUE GOL A 1001
A
GOL
1001
Software
7
BINDING SITE FOR RESIDUE GOL A 1003
A
GOL
1003
Software
7
BINDING SITE FOR RESIDUE GOL A 1004
A
GOL
1004
Software
11
A
CYS
245
C
CYS
245
4
1_555
A
CYS
248
C
CYS
248
4
1_555
A
CYS
265
C
CYS
265
4
1_555
A
CYS
268
C
CYS
268
4
1_555
A
ARG
16
C
ARG
16
7
1_555
A
GLN
20
C
GLN
20
7
1_555
A
LEU
81
C
LEU
81
7
1_555
A
THR
83
C
THR
83
7
8_775
A
ASP
85
C
ASP
85
7
8_775
A
ASP
100
C
ASP
100
7
1_555
A
GLY
101
C
GLY
101
7
1_555
A
GLY
259
C
GLY
259
7
1_555
A
ARG
260
C
ARG
260
7
1_555
A
HOH
1193
J
HOH
7
1_555
A
HOH
1245
J
HOH
7
1_555
D
DT
8
A
DT
8
7
1_555
D
DT
9
A
DT
9
7
1_555
E
DA
21
B
DA
7
7
1_555
A
TYR
58
C
TYR
58
11
1_555
A
HIS
72
C
HIS
72
11
1_555
A
ARG
74
C
ARG
74
11
1_555
A
THR
113
C
THR
113
11
1_555
A
GLU
115
C
GLU
115
11
1_555
A
TYR
125
C
TYR
125
11
1_555
A
LYS
129
C
LYS
129
11
1_555
A
HOH
1108
J
HOH
11
1_555
A
HOH
1114
J
HOH
11
1_555
D
DT
9
A
DT
9
11
1_555
D
DT
10
A
DT
10
11
1_555
92
P 41 21 2