0.010895 0.000000 0.000000 0.000000 0.010895 0.000000 0.000000 0.000000 0.007053 0.00000 0.00000 0.00000 Pereira de Jesus-Tran, K. Serre, L. Zelwer, C. Castaing, B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 91.784 91.784 141.792 C5 H11 O6 P 198.111 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE ABASIC DIDEOXYRIBOSE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 N C N 8 R C N 9 N O N 10 N C N 11 S C N 12 N O N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N N N 25 S C N 26 N C N 27 N O N 28 N C N 29 N O N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N N N 38 S C N 39 N C N 40 N O N 41 N C N 42 N C N 43 N C N 44 N N N 45 N C N 46 N N N 47 N N N 48 N O N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N N N 65 S C N 66 N C N 67 N O N 68 N C N 69 N C N 70 N O N 71 N N N 72 N O N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 S C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N O N 88 N O N 89 N O N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N N N 98 R C N 99 N C N 100 N O N 101 N C N 102 N S N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C Y 127 N C N 128 N N Y 129 N N Y 130 N C Y 131 N N Y 132 N C N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N O N 148 N P N 149 N O N 150 N O N 151 N O N 152 N C N 153 R C N 154 N O N 155 S C N 156 N O N 157 N C N 158 R C N 159 N N N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N C N 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C Y 193 N N Y 194 N C Y 195 N N Y 196 N C N 197 N C N 198 N O N 199 N N N 200 N C N 201 N N N 202 N N Y 203 N C N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N O N 219 N P N 220 N O N 221 N O N 222 N O N 223 N C N 224 R C N 225 N O N 226 S C N 227 N O N 228 N C N 229 R C N 230 N N N 231 N C N 232 N O N 233 N N N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N O N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 N C N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N C N 304 N O N 305 N C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C Y 322 N C Y 323 N N Y 324 N C Y 325 N C Y 326 N N N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N O N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 S C N 346 N C N 347 N C N 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N C N 370 N C N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 N C N 390 N C N 391 N C N 392 N C N 393 N N N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 N C N 415 N C N 416 N S N 417 N C N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N N N 431 S C N 432 N C N 433 N O N 434 N C Y 435 N C Y 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N N N 454 S C N 455 N C N 456 N O N 457 N C N 458 N C N 459 N C N 460 N O N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N N N 471 S C N 472 N C N 473 N O N 474 N C N 475 N O N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N N N 485 S C N 486 N C N 487 N O N 488 R C N 489 N O N 490 N C N 491 N O N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N N N 502 S C N 503 N C N 504 N O N 505 N C Y 506 N C Y 507 N C Y 508 N C Y 509 N N Y 510 N C Y 511 N C Y 512 N C Y 513 N C Y 514 N C N 515 N O N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N N N 529 S C N 530 N C N 531 N O N 532 N C Y 533 N C Y 534 N C Y 535 N C Y 536 N C Y 537 N C Y 538 N C N 539 N O N 540 N O N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N N N 553 S C N 554 N C N 555 N O N 556 N C N 557 N C N 558 N C N 559 N O N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N ZN N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing Y 129 N sing Y 130 N sing Y 131 N doub N 132 N sing Y 133 N sing Y 134 N sing Y 135 N doub N 136 N sing Y 137 N doub N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub N 142 N sing Y 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing Y 202 N sing Y 203 N sing Y 204 N doub N 205 N sing Y 206 N sing N 207 N sing Y 208 N doub N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing Y 325 N sing Y 326 N doub Y 327 N doub N 328 N sing Y 329 N sing N 330 N sing Y 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing Y 433 N doub Y 434 N sing Y 435 N sing N 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N doub N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N doub N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N sing Y 502 N doub Y 503 N sing Y 504 N sing N 505 N sing Y 506 N doub Y 507 N sing Y 508 N sing N 509 N sing Y 510 N sing Y 511 N doub N 512 N sing Y 513 N doub N 514 N sing Y 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N doub N 526 N sing N 527 N sing N 528 N sing N 529 N sing Y 530 N doub Y 531 N sing Y 532 N sing N 533 N sing Y 534 N doub N 535 N sing Y 536 N doub N 537 N sing Y 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N doub N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 33 5936 5944 10.1093/nar/gki879 16243784 Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA. 2005 UK Embo J. EMJODG 0897 0261-4189 21 2854 2865 10.1093/emboj/cdf304 Crystal structure of the Lactococcus lactis Formamidopyrimidine DNA glycosylase bound to an abasic site analogue-containing DNA 2002 10.2210/pdb1pm5/pdb pdb_00001pm5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2003-02-14 MARRESEARCH MIRROR SINGLE WAVELENGTH M x-ray 1 0.97 1.0 BM30A ESRF 0.97 SYNCHROTRON ESRF BEAMLINE BM30A 4054.614 DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3') 1 syn polymer 4355.884 DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3') 1 syn polymer 31116.217 Formamidopyrimidine-DNA glycosylase 3.2.2.23 Fpg 1 man polymer 65.409 ZINC ION 1 syn non-polymer 92.094 GLYCEROL 3 syn non-polymer 18.015 water 306 nat water FAPY-DNA glycosylase 3.2.2.23 no yes (DC)(DT)(DC)(DT)(DT)(DT)(3DR)(DT)(DT)(DT)(DC)(DT)(DC)(DG) CTCTTTNTTTCTCG D polydeoxyribonucleotide no no (DG)(DC)(DG)(DA)(DG)(DA)(DA)(DA)(DC)(DA)(DA)(DA)(DG)(DA) GCGAGAAACAAAGA E polydeoxyribonucleotide no no PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYR LATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYL LEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYGK TGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYR LATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYL LEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYGK TGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lactococcus Lactococcus lactis subsp. cremoris Escherichia sample MUTM OR FPG 1359 Lactococcus lactis subsp. cremoris 562 Escherichia coli PLASMID PMAL-C 1 3.75 67.18 VAPOR DIFFUSION, HANGING DROP 8.0 citrate, hepes, glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 296K 296 citrate 1 hepes 1 glycerol 1 water 1 citrate 2 glycerol 2 4.345 1 20 D 2 E 28 2.086 D_DT2:DA28_E 1 -8.027 -0.256 -0.079 -0.072 1.674 1 19 D 3 E 27 2.253 D_DC3:DG27_E 2 -8.486 -0.022 -0.163 -0.007 -5.914 1 20 D 4 E 26 3.737 D_DT4:DA26_E 3 -9.800 -0.081 0.106 0.145 6.428 1 20 D 5 E 25 1.976 D_DT5:DA25_E 4 -6.464 -0.271 -0.469 -0.092 16.140 1 20 D 6 E 24 0.165 D_DT6:DA24_E 5 -0.812 -0.001 -0.550 -0.077 -8.661 1 20 D 8 E 22 -1.669 D_DT8:DA22_E 6 -2.000 -0.031 -0.138 -0.102 0.435 1 20 D 9 E 21 -0.463 D_DT9:DA21_E 7 -9.985 -0.035 -0.234 0.016 2.827 1 20 D 10 E 20 0.489 D_DT10:DA20_E 8 -6.546 -0.141 -0.188 -0.079 3.277 1 19 D 11 E 19 -2.453 D_DC11:DG19_E 9 -11.858 0.182 -0.319 0.084 -0.429 1 20 D 12 E 18 -1.623 D_DT12:DA18_E 10 -14.453 -0.246 0.056 -0.047 -5.983 1 19 D 13 E 17 0.564 D_DC13:DG17_E 11 -8.717 0.287 0.207 0.018 -1.590 1 19 D 14 E 16 -0.860 D_DG14:DC16_E 12 -5.104 0.177 -0.390 -0.053 3.332 37.807 D D 2 3 6.295 E E 28 27 3.349 4.070 0.378 -0.128 DD_DT2DC3:DG27DA28_EE 1 1.892 -2.926 37.549 -0.734 -0.334 3.385 34.214 D D 3 4 11.123 E E 27 26 3.546 6.506 0.231 -0.550 DD_DC3DT4:DA26DG27_EE 2 0.234 -0.401 33.607 -2.032 -0.353 2.939 32.168 D D 4 5 6.190 E E 26 25 2.957 3.418 0.143 -0.007 DD_DT4DT5:DA25DA26_EE 3 3.403 -6.164 31.814 -0.567 0.293 3.082 30.683 D D 5 6 22.335 E E 25 24 3.218 11.539 -0.099 0.254 DD_DT5DT6:DA24DA25_EE 4 0.861 -1.667 28.466 -1.793 0.357 3.112 30.441 D D 8 9 10.419 E E 22 21 3.141 5.443 0.269 0.111 DD_DT8DT9:DA21DA22_EE 5 -0.002 0.004 29.962 -0.838 -0.513 3.338 33.646 D D 9 10 6.726 E E 21 20 3.344 3.884 0.570 -0.048 DD_DT9DT10:DA20DA21_EE 6 1.453 -2.517 33.397 -0.733 -0.741 3.342 34.628 D D 10 11 -4.334 E E 20 19 3.314 -2.577 -0.689 -0.303 DD_DT10DC11:DG19DA20_EE 7 -0.837 1.407 34.525 -0.105 1.026 3.406 32.523 D D 11 12 10.096 E E 19 18 3.475 5.624 -0.632 -0.313 DD_DC11DT12:DA18DG19_EE 8 -2.103 3.775 31.978 -1.602 0.738 3.424 37.444 D D 12 13 7.578 E E 18 17 3.479 4.851 0.337 -0.089 DD_DT12DC13:DG17DA18_EE 9 -1.569 2.450 37.108 -0.813 -0.743 3.404 35.338 D D 13 14 16.279 E E 17 16 3.327 9.729 0.409 0.655 DD_DC13DG14:DC16DG17_EE 10 5.008 -8.379 33.652 -0.439 0.106 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_conn_type struct_site repository Initial release Version format compliance Non-polymer description Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2004-07-27 1 1 2008-04-29 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id sequence The author maintains that the Asp137 is an error in the sequence database. This residue does not exist. RCSB Y RCSB 2003-06-10 REL REL ZN ZINC ION GOL GLYCEROL HOH water synyhetic sample synthetic sample 1NNJ PDB experimental model ZN 300 4 ZN ZN 300 A GOL 1 5 GOL GOL 1001 A GOL 3 5 GOL GOL 1003 A GOL 4 5 GOL GOL 1004 A WAT 112 6 HOH HOH 112 D WAT 144 6 HOH HOH 144 D WAT 182 6 HOH HOH 182 D WAT 183 6 HOH HOH 183 D WAT 185 6 HOH HOH 185 D WAT 187 6 HOH HOH 187 D WAT 191 6 HOH HOH 191 D WAT 192 6 HOH HOH 192 D WAT 193 6 HOH HOH 193 D WAT 194 6 HOH HOH 194 D WAT 195 6 HOH HOH 195 D WAT 197 6 HOH HOH 197 D WAT 203 6 HOH HOH 203 D WAT 204 6 HOH HOH 204 D WAT 205 6 HOH HOH 205 D WAT 214 6 HOH HOH 214 D WAT 226 6 HOH HOH 226 D WAT 227 6 HOH HOH 227 D WAT 229 6 HOH HOH 229 D WAT 235 6 HOH HOH 235 D WAT 242 6 HOH HOH 242 D WAT 252 6 HOH HOH 252 D WAT 256 6 HOH HOH 256 D WAT 273 6 HOH HOH 273 D WAT 282 6 HOH HOH 282 D WAT 284 6 HOH HOH 284 D WAT 199 6 HOH HOH 199 E WAT 202 6 HOH HOH 202 E WAT 206 6 HOH HOH 206 E WAT 224 6 HOH HOH 224 E WAT 230 6 HOH HOH 230 E WAT 250 6 HOH HOH 250 E WAT 259 6 HOH HOH 259 E WAT 260 6 HOH HOH 260 E WAT 263 6 HOH HOH 263 E WAT 267 6 HOH HOH 267 E WAT 268 6 HOH HOH 268 E WAT 269 6 HOH HOH 269 E WAT 274 6 HOH HOH 274 E WAT 276 6 HOH HOH 276 E WAT 286 6 HOH HOH 286 E WAT 301 6 HOH HOH 301 E WAT 305 6 HOH HOH 305 E WAT 1 6 HOH HOH 1005 A WAT 2 6 HOH HOH 1006 A WAT 3 6 HOH HOH 1007 A WAT 4 6 HOH HOH 1008 A WAT 5 6 HOH HOH 1009 A WAT 6 6 HOH HOH 1010 A WAT 7 6 HOH HOH 1011 A WAT 8 6 HOH HOH 1012 A WAT 9 6 HOH HOH 1013 A WAT 10 6 HOH HOH 1014 A WAT 11 6 HOH HOH 1015 A WAT 12 6 HOH HOH 1016 A WAT 13 6 HOH HOH 1017 A WAT 14 6 HOH HOH 1018 A WAT 15 6 HOH HOH 1019 A WAT 16 6 HOH HOH 1020 A WAT 17 6 HOH HOH 1021 A WAT 18 6 HOH HOH 1022 A WAT 19 6 HOH HOH 1023 A WAT 20 6 HOH HOH 1024 A WAT 21 6 HOH HOH 1025 A WAT 22 6 HOH HOH 1026 A WAT 23 6 HOH HOH 1027 A WAT 24 6 HOH HOH 1028 A WAT 25 6 HOH HOH 1029 A WAT 26 6 HOH HOH 1030 A WAT 27 6 HOH HOH 1031 A WAT 28 6 HOH HOH 1032 A WAT 29 6 HOH HOH 1033 A WAT 30 6 HOH HOH 1034 A WAT 31 6 HOH HOH 1035 A WAT 32 6 HOH HOH 1036 A WAT 33 6 HOH HOH 1037 A WAT 34 6 HOH HOH 1038 A WAT 35 6 HOH HOH 1039 A WAT 36 6 HOH HOH 1040 A WAT 37 6 HOH HOH 1041 A WAT 38 6 HOH HOH 1042 A WAT 39 6 HOH HOH 1043 A WAT 40 6 HOH HOH 1044 A WAT 41 6 HOH HOH 1045 A WAT 43 6 HOH HOH 1046 A WAT 44 6 HOH HOH 1047 A WAT 45 6 HOH HOH 1048 A WAT 46 6 HOH HOH 1049 A WAT 47 6 HOH HOH 1050 A WAT 48 6 HOH HOH 1051 A WAT 49 6 HOH HOH 1052 A WAT 50 6 HOH HOH 1053 A WAT 51 6 HOH HOH 1054 A WAT 52 6 HOH HOH 1055 A WAT 53 6 HOH HOH 1056 A WAT 54 6 HOH HOH 1057 A WAT 55 6 HOH HOH 1058 A WAT 56 6 HOH HOH 1059 A WAT 57 6 HOH HOH 1060 A WAT 58 6 HOH HOH 1061 A WAT 59 6 HOH HOH 1062 A WAT 60 6 HOH HOH 1063 A WAT 61 6 HOH HOH 1064 A WAT 62 6 HOH HOH 1065 A WAT 63 6 HOH HOH 1066 A WAT 64 6 HOH HOH 1067 A WAT 65 6 HOH HOH 1068 A WAT 66 6 HOH HOH 1069 A WAT 67 6 HOH HOH 1070 A WAT 68 6 HOH HOH 1071 A WAT 69 6 HOH HOH 1072 A WAT 70 6 HOH HOH 1073 A WAT 71 6 HOH HOH 1074 A WAT 72 6 HOH HOH 1075 A WAT 73 6 HOH HOH 1076 A WAT 74 6 HOH HOH 1077 A WAT 75 6 HOH HOH 1078 A WAT 76 6 HOH HOH 1079 A WAT 77 6 HOH HOH 1080 A WAT 78 6 HOH HOH 1081 A WAT 79 6 HOH HOH 1082 A WAT 80 6 HOH HOH 1083 A WAT 81 6 HOH HOH 1084 A WAT 82 6 HOH HOH 1085 A WAT 83 6 HOH HOH 1086 A WAT 84 6 HOH HOH 1087 A WAT 85 6 HOH HOH 1088 A WAT 86 6 HOH HOH 1089 A WAT 87 6 HOH HOH 1090 A WAT 88 6 HOH HOH 1091 A WAT 89 6 HOH HOH 1092 A WAT 90 6 HOH HOH 1093 A WAT 91 6 HOH HOH 1094 A WAT 92 6 HOH HOH 1095 A WAT 93 6 HOH HOH 1096 A WAT 94 6 HOH HOH 1097 A WAT 95 6 HOH HOH 1098 A WAT 96 6 HOH HOH 1099 A WAT 97 6 HOH HOH 1100 A WAT 98 6 HOH HOH 1101 A WAT 99 6 HOH HOH 1102 A WAT 100 6 HOH HOH 1103 A WAT 101 6 HOH HOH 1104 A WAT 102 6 HOH HOH 1105 A WAT 103 6 HOH HOH 1106 A WAT 104 6 HOH HOH 1107 A WAT 105 6 HOH HOH 1108 A WAT 106 6 HOH HOH 1109 A WAT 107 6 HOH HOH 1110 A WAT 108 6 HOH HOH 1111 A WAT 109 6 HOH HOH 1112 A WAT 110 6 HOH HOH 1113 A WAT 111 6 HOH HOH 1114 A WAT 113 6 HOH HOH 1115 A WAT 114 6 HOH HOH 1116 A WAT 115 6 HOH HOH 1117 A WAT 116 6 HOH HOH 1118 A WAT 117 6 HOH HOH 1119 A WAT 118 6 HOH HOH 1120 A WAT 119 6 HOH HOH 1121 A WAT 120 6 HOH HOH 1122 A WAT 121 6 HOH HOH 1123 A WAT 122 6 HOH HOH 1124 A WAT 123 6 HOH HOH 1125 A WAT 124 6 HOH HOH 1126 A WAT 125 6 HOH HOH 1127 A WAT 126 6 HOH HOH 1128 A WAT 127 6 HOH HOH 1129 A WAT 128 6 HOH HOH 1130 A WAT 129 6 HOH HOH 1131 A WAT 130 6 HOH HOH 1132 A WAT 131 6 HOH HOH 1133 A WAT 132 6 HOH HOH 1134 A WAT 133 6 HOH HOH 1135 A WAT 134 6 HOH HOH 1136 A WAT 135 6 HOH HOH 1137 A WAT 136 6 HOH HOH 1138 A WAT 137 6 HOH HOH 1139 A WAT 138 6 HOH HOH 1140 A WAT 139 6 HOH HOH 1141 A WAT 140 6 HOH HOH 1142 A WAT 141 6 HOH HOH 1143 A WAT 142 6 HOH HOH 1144 A WAT 143 6 HOH HOH 1145 A WAT 145 6 HOH HOH 1146 A WAT 146 6 HOH HOH 1147 A WAT 147 6 HOH HOH 1148 A WAT 148 6 HOH HOH 1149 A WAT 149 6 HOH HOH 1150 A WAT 150 6 HOH HOH 1151 A WAT 151 6 HOH HOH 1152 A WAT 152 6 HOH HOH 1153 A WAT 153 6 HOH HOH 1154 A WAT 154 6 HOH HOH 1155 A WAT 155 6 HOH HOH 1156 A WAT 156 6 HOH HOH 1157 A WAT 157 6 HOH HOH 1158 A WAT 158 6 HOH HOH 1159 A WAT 159 6 HOH HOH 1160 A WAT 160 6 HOH HOH 1161 A WAT 161 6 HOH HOH 1162 A WAT 162 6 HOH HOH 1163 A WAT 163 6 HOH HOH 1164 A WAT 164 6 HOH HOH 1165 A WAT 165 6 HOH HOH 1166 A WAT 166 6 HOH HOH 1167 A WAT 167 6 HOH HOH 1168 A WAT 168 6 HOH HOH 1169 A WAT 169 6 HOH HOH 1170 A WAT 170 6 HOH HOH 1171 A WAT 171 6 HOH HOH 1172 A WAT 172 6 HOH HOH 1173 A WAT 173 6 HOH HOH 1174 A WAT 174 6 HOH HOH 1175 A WAT 175 6 HOH HOH 1176 A WAT 176 6 HOH HOH 1177 A WAT 177 6 HOH HOH 1178 A WAT 178 6 HOH HOH 1179 A WAT 179 6 HOH HOH 1180 A WAT 180 6 HOH HOH 1181 A WAT 181 6 HOH HOH 1182 A WAT 184 6 HOH HOH 1183 A WAT 186 6 HOH HOH 1184 A WAT 188 6 HOH HOH 1185 A WAT 189 6 HOH HOH 1186 A WAT 190 6 HOH HOH 1187 A WAT 196 6 HOH HOH 1188 A WAT 200 6 HOH HOH 1189 A WAT 201 6 HOH HOH 1190 A WAT 207 6 HOH HOH 1191 A WAT 208 6 HOH HOH 1192 A WAT 209 6 HOH HOH 1193 A WAT 210 6 HOH HOH 1194 A WAT 211 6 HOH HOH 1195 A WAT 212 6 HOH HOH 1196 A WAT 213 6 HOH HOH 1197 A WAT 215 6 HOH HOH 1198 A WAT 216 6 HOH HOH 1199 A WAT 217 6 HOH HOH 1200 A WAT 218 6 HOH HOH 1201 A WAT 219 6 HOH HOH 1202 A WAT 220 6 HOH HOH 1203 A WAT 221 6 HOH HOH 1204 A WAT 222 6 HOH HOH 1205 A WAT 223 6 HOH HOH 1206 A WAT 225 6 HOH HOH 1207 A WAT 228 6 HOH HOH 1208 A WAT 231 6 HOH HOH 1209 A WAT 232 6 HOH HOH 1210 A WAT 233 6 HOH HOH 1211 A WAT 234 6 HOH HOH 1212 A WAT 236 6 HOH HOH 1213 A WAT 237 6 HOH HOH 1214 A WAT 238 6 HOH HOH 1215 A WAT 239 6 HOH HOH 1216 A WAT 240 6 HOH HOH 1217 A WAT 241 6 HOH HOH 1218 A WAT 243 6 HOH HOH 1219 A WAT 244 6 HOH HOH 1220 A WAT 245 6 HOH HOH 1221 A WAT 246 6 HOH HOH 1222 A WAT 247 6 HOH HOH 1223 A WAT 248 6 HOH HOH 1224 A WAT 249 6 HOH HOH 1225 A WAT 251 6 HOH HOH 1226 A WAT 253 6 HOH HOH 1227 A WAT 254 6 HOH HOH 1228 A WAT 255 6 HOH HOH 1229 A WAT 257 6 HOH HOH 1230 A WAT 258 6 HOH HOH 1231 A WAT 261 6 HOH HOH 1232 A WAT 262 6 HOH HOH 1233 A WAT 264 6 HOH HOH 1234 A WAT 265 6 HOH HOH 1235 A WAT 266 6 HOH HOH 1236 A WAT 270 6 HOH HOH 1237 A WAT 271 6 HOH HOH 1238 A WAT 272 6 HOH HOH 1239 A WAT 275 6 HOH HOH 1240 A WAT 277 6 HOH HOH 1241 A WAT 278 6 HOH HOH 1242 A WAT 279 6 HOH HOH 1243 A WAT 280 6 HOH HOH 1244 A WAT 281 6 HOH HOH 1245 A WAT 283 6 HOH HOH 1246 A WAT 285 6 HOH HOH 1247 A WAT 287 6 HOH HOH 1248 A WAT 288 6 HOH HOH 1249 A WAT 289 6 HOH HOH 1250 A WAT 290 6 HOH HOH 1251 A WAT 291 6 HOH HOH 1252 A WAT 292 6 HOH HOH 1253 A WAT 293 6 HOH HOH 1254 A WAT 294 6 HOH HOH 1255 A WAT 295 6 HOH HOH 1256 A WAT 296 6 HOH HOH 1257 A WAT 297 6 HOH HOH 1258 A WAT 298 6 HOH HOH 1259 A WAT 299 6 HOH HOH 1260 A WAT 300 6 HOH HOH 1261 A WAT 302 6 HOH HOH 1262 A WAT 303 6 HOH HOH 1263 A WAT 304 6 HOH HOH 1264 A WAT 306 6 HOH HOH 1265 A WAT 307 6 HOH HOH 1266 A WAT 308 6 HOH HOH 1267 A CYT 1 n 1 DC 1 D THY 2 n 2 DT 2 D CYT 3 n 3 DC 3 D THY 4 n 4 DT 4 D THY 5 n 5 DT 5 D THY 6 n 6 DT 6 D 3DR 7 n 7 3DR 7 D THY 8 n 8 DT 8 D THY 9 n 9 DT 9 D THY 10 n 10 DT 10 D CYT 11 n 11 DC 11 D THY 12 n 12 DT 12 D CYT 13 n 13 DC 13 D GUA 14 n 14 DG 14 D GUA 15 n 1 DG 15 E CYT 16 n 2 DC 16 E GUA 17 n 3 DG 17 E ADE 18 n 4 DA 18 E GUA 19 n 5 DG 19 E ADE 20 n 6 DA 20 E ADE 21 n 7 DA 21 E ADE 22 n 8 DA 22 E CYT 23 n 9 DC 23 E ADE 24 n 10 DA 24 E ADE 25 n 11 DA 25 E ADE 26 n 12 DA 26 E GUA 27 n 13 DG 27 E ADE 28 n 14 DA 28 E PRO 1 n 1 PRO 1 A GLU 2 n 2 GLU 2 A LEU 3 n 3 LEU 3 A PRO 4 n 4 PRO 4 A GLU 5 n 5 GLU 5 A VAL 6 n 6 VAL 6 A GLU 7 n 7 GLU 7 A THR 8 n 8 THR 8 A VAL 9 n 9 VAL 9 A ARG 10 n 10 ARG 10 A ARG 11 n 11 ARG 11 A GLU 12 n 12 GLU 12 A LEU 13 n 13 LEU 13 A GLU 14 n 14 GLU 14 A LYS 15 n 15 LYS 15 A ARG 16 n 16 ARG 16 A ILE 17 n 17 ILE 17 A VAL 18 n 18 VAL 18 A GLY 19 n 19 GLY 19 A GLN 20 n 20 GLN 20 A LYS 21 n 21 LYS 21 A ILE 22 n 22 ILE 22 A ILE 23 n 23 ILE 23 A SER 24 n 24 SER 24 A ILE 25 n 25 ILE 25 A GLU 26 n 26 GLU 26 A ALA 27 n 27 ALA 27 A THR 28 n 28 THR 28 A TYR 29 n 29 TYR 29 A PRO 30 n 30 PRO 30 A ARG 31 n 31 ARG 31 A MET 32 n 32 MET 32 A VAL 33 n 33 VAL 33 A LEU 34 n 34 LEU 34 A THR 35 n 35 THR 35 A GLY 36 n 36 GLY 36 A PHE 37 n 37 PHE 37 A GLU 38 n 38 GLU 38 A GLN 39 n 39 GLN 39 A LEU 40 n 40 LEU 40 A LYS 41 n 41 LYS 41 A LYS 42 n 42 LYS 42 A GLU 43 n 43 GLU 43 A LEU 44 n 44 LEU 44 A THR 45 n 45 THR 45 A GLY 46 n 46 GLY 46 A LYS 47 n 47 LYS 47 A THR 48 n 48 THR 48 A ILE 49 n 49 ILE 49 A GLN 50 n 50 GLN 50 A GLY 51 n 51 GLY 51 A ILE 52 n 52 ILE 52 A SER 53 n 53 SER 53 A ARG 54 n 54 ARG 54 A ARG 55 n 55 ARG 55 A GLY 56 n 56 GLY 56 A LYS 57 n 57 LYS 57 A TYR 58 n 58 TYR 58 A LEU 59 n 59 LEU 59 A ILE 60 n 60 ILE 60 A PHE 61 n 61 PHE 61 A GLU 62 n 62 GLU 62 A ILE 63 n 63 ILE 63 A GLY 64 n 64 GLY 64 A ALA 65 n 65 ASP 65 A ASP 66 n 66 ASP 66 A PHE 67 n 67 PHE 67 A ARG 68 n 68 ARG 68 A LEU 69 n 69 LEU 69 A ILE 70 n 70 ILE 70 A SER 71 n 71 SER 71 A HIS 72 n 72 HIS 72 A LEU 73 n 73 LEU 73 A ARG 74 n 74 ARG 74 A MET 75 n 75 MET 75 A GLU 76 n 76 GLU 76 A GLY 77 n 77 GLY 77 A LYS 78 n 78 LYS 78 A TYR 79 n 79 TYR 79 A ARG 80 n 80 ARG 80 A LEU 81 n 81 LEU 81 A ALA 82 n 82 ALA 82 A THR 83 n 83 THR 83 A LEU 84 n 84 LEU 84 A ASP 85 n 85 ASP 85 A ALA 86 n 86 ALA 86 A PRO 87 n 87 PRO 87 A ALA 88 n 88 ARG 88 A GLU 89 n 89 GLU 89 A LYS 90 n 90 LYS 90 A HIS 91 n 91 HIS 91 A ASP 92 n 92 ASP 92 A HIS 93 n 93 HIS 93 A LEU 94 n 94 LEU 94 A THR 95 n 95 THR 95 A MET 96 n 96 MET 96 A LYS 97 n 97 LYS 97 A PHE 98 n 98 PHE 98 A ALA 99 n 99 ALA 99 A ASP 100 n 100 ASP 100 A GLY 101 n 101 GLY 101 A GLN 102 n 102 GLN 102 A LEU 103 n 103 LEU 103 A ILE 104 n 104 ILE 104 A TYR 105 n 105 TYR 105 A ALA 106 n 106 ALA 106 A ASP 107 n 107 ASP 107 A VAL 108 n 108 VAL 108 A ARG 109 n 109 ARG 109 A LYS 110 n 110 LYS 110 A PHE 111 n 111 PHE 111 A GLY 112 n 112 GLY 112 A THR 113 n 113 THR 113 A TRP 114 n 114 TRP 114 A GLU 115 n 115 GLU 115 A LEU 116 n 116 LEU 116 A ILE 117 n 117 ILE 117 A SER 118 n 118 SER 118 A THR 119 n 119 THR 119 A ASP 120 n 120 ASP 120 A GLN 121 n 121 GLN 121 A VAL 122 n 122 VAL 122 A LEU 123 n 123 LEU 123 A PRO 124 n 124 PRO 124 A TYR 125 n 125 TYR 125 A PHE 126 n 126 PHE 126 A LEU 127 n 127 LEU 127 A LYS 128 n 128 LYS 128 A LYS 129 n 129 LYS 129 A LYS 130 n 130 LYS 130 A ILE 131 n 131 ILE 131 A GLY 132 n 132 GLY 132 A PRO 133 n 133 PRO 133 A GLU 134 n 134 GLU 134 A PRO 135 n 135 PRO 135 A THR 136 n 136 THR 136 A TYR 137 n 137 TYR 137 A GLU 138 n 138 GLU 138 A ASP 139 n 139 ASP 139 A PHE 140 n 140 PHE 140 A ASP 141 n 141 ASP 141 A GLU 142 n 142 GLU 142 A LYS 143 n 143 LYS 143 A LEU 144 n 144 LEU 144 A PHE 145 n 145 PHE 145 A ARG 146 n 146 ARG 146 A GLU 147 n 147 GLU 147 A LYS 148 n 148 LYS 148 A LEU 149 n 149 LEU 149 A ARG 150 n 150 ARG 150 A LYS 151 n 151 LYS 151 A SER 152 n 152 SER 152 A THR 153 n 153 THR 153 A LYS 154 n 154 LYS 154 A LYS 155 n 155 LYS 155 A ILE 156 n 156 ILE 156 A LYS 157 n 157 LYS 157 A PRO 158 n 158 PRO 158 A TYR 159 n 159 TYR 159 A LEU 160 n 160 LEU 160 A LEU 161 n 161 LEU 161 A GLU 162 n 162 GLU 162 A GLN 163 n 163 GLN 163 A THR 164 n 164 THR 164 A LEU 165 n 165 LEU 165 A VAL 166 n 166 VAL 166 A ALA 167 n 167 ALA 167 A GLY 168 n 168 GLY 168 A LEU 169 n 169 LEU 169 A GLY 170 n 170 GLY 170 A ASN 171 n 171 ASN 171 A ILE 172 n 172 ILE 172 A TYR 173 n 173 TYR 173 A VAL 174 n 174 VAL 174 A ASP 175 n 175 ASP 175 A GLU 176 n 176 GLU 176 A VAL 177 n 177 VAL 177 A LEU 178 n 178 LEU 178 A TRP 179 n 179 TRP 179 A LEU 180 n 180 LEU 180 A ALA 181 n 181 ALA 181 A LYS 182 n 182 LYS 182 A ILE 183 n 183 ILE 183 A HIS 184 n 184 HIS 184 A PRO 185 n 185 PRO 185 A GLU 186 n 186 GLU 186 A LYS 187 n 187 LYS 187 A GLU 188 n 188 GLU 188 A THR 189 n 189 THR 189 A ASN 190 n 190 ASN 190 A GLN 191 n 191 GLN 191 A LEU 192 n 192 LEU 192 A ILE 193 n 193 ILE 193 A GLU 194 n 194 GLU 194 A SER 195 n 195 SER 195 A SER 196 n 196 SER 196 A ILE 197 n 197 ILE 197 A HIS 198 n 198 HIS 198 A LEU 199 n 199 LEU 199 A LEU 200 n 200 LEU 200 A HIS 201 n 201 HIS 201 A ASP 202 n 202 ASP 202 A SER 203 n 203 SER 203 A ILE 204 n 204 ILE 204 A ILE 205 n 205 ILE 205 A GLU 206 n 206 GLU 206 A ILE 207 n 207 ILE 207 A LEU 208 n 208 LEU 208 A GLN 209 n 209 GLN 209 A LYS 210 n 210 LYS 210 A ALA 211 n 211 ALA 211 A ILE 212 n 212 ILE 212 A LYS 213 n 213 LYS 213 A LEU 214 n 214 LEU 214 A GLY 215 n 215 GLY 215 A GLY 216 n 216 GLY 216 A SER 217 n 217 SER 217 A SER 218 n 218 SER 218 A ILE 219 n 219 ILE 219 A GLY 220 n 220 ARG 220 A GLY 221 n 221 THR 221 A GLY 222 n 222 TYR 222 A SER 223 n 223 SER 223 A ALA 224 n 224 ALA 224 A LEU 225 n 225 LEU 225 A GLY 226 n 226 GLY 226 A SER 227 n 227 SER 227 A THR 228 n 228 THR 228 A GLY 229 n 229 GLY 229 A LYS 230 n 230 LYS 230 A MET 231 n 231 MET 231 A GLN 232 n 232 GLN 232 A ASN 233 n 233 ASN 233 A GLU 234 n 234 GLU 234 A LEU 235 n 235 LEU 235 A GLN 236 n 236 GLN 236 A VAL 237 n 237 VAL 237 A TYR 238 n 238 TYR 238 A GLY 239 n 239 GLY 239 A LYS 240 n 240 LYS 240 A THR 241 n 241 THR 241 A GLY 242 n 242 GLY 242 A GLU 243 n 243 GLU 243 A LYS 244 n 244 LYS 244 A CYS 245 n 245 CYS 245 A SER 246 n 246 SER 246 A ARG 247 n 247 ARG 247 A CYS 248 n 248 CYS 248 A GLY 249 n 249 GLY 249 A ALA 250 n 250 ALA 250 A GLU 251 n 251 GLU 251 A ILE 252 n 252 ILE 252 A GLN 253 n 253 GLN 253 A LYS 254 n 254 LYS 254 A ILE 255 n 255 ILE 255 A LYS 256 n 256 LYS 256 A VAL 257 n 257 VAL 257 A ALA 258 n 258 ALA 258 A GLY 259 n 259 GLY 259 A ARG 260 n 260 ARG 260 A GLY 261 n 261 GLY 261 A THR 262 n 262 THR 262 A HIS 263 n 263 HIS 263 A PHE 264 n 264 PHE 264 A CYS 265 n 265 CYS 265 A PRO 266 n 266 PRO 266 A VAL 267 n 267 VAL 267 A CYS 268 n 268 CYS 268 A GLN 269 n 269 GLN 269 A GLN 270 n 270 GLN 270 A LYS 271 n 271 LYS 271 A author_defined_assembly 3 trimeric A CYS 245 C SG CYS 245 1_555 A ZN 300 D ZN ZN 1_555 A CYS 248 C SG CYS 248 1_555 112.1 A CYS 245 C SG CYS 245 1_555 A ZN 300 D ZN ZN 1_555 A CYS 265 C SG CYS 265 1_555 111.8 A CYS 248 C SG CYS 248 1_555 A ZN 300 D ZN ZN 1_555 A CYS 265 C SG CYS 265 1_555 95.6 A CYS 245 C SG CYS 245 1_555 A ZN 300 D ZN ZN 1_555 A CYS 268 C SG CYS 268 1_555 107.8 A CYS 248 C SG CYS 248 1_555 A ZN 300 D ZN ZN 1_555 A CYS 268 C SG CYS 268 1_555 113.8 A CYS 265 C SG CYS 265 1_555 A ZN 300 D ZN ZN 1_555 A CYS 268 C SG CYS 268 1_555 115.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 24 C N SER 24 A O LYS 97 C O LYS 97 A N MET 96 C N MET 96 A O LEU 103 C O LEU 103 A O ALA 106 C O ALA 106 A N LYS 78 C N LYS 78 A N SER 53 C N SER 53 A O ILE 60 C O ILE 60 A N LEU 59 C N LEU 59 A O SER 71 C O SER 71 A N ILE 70 C N ILE 70 A O GLU 115 C O GLU 115 A N ILE 255 C N ILE 255 A O THR 262 C O THR 262 1 A CG ASP 65 C CG ASP 65 1 Y 1 A OD1 ASP 65 C OD1 ASP 65 1 Y 1 A OD2 ASP 65 C OD2 ASP 65 1 Y 1 A CG ARG 88 C CG ARG 88 1 Y 1 A CD ARG 88 C CD ARG 88 1 Y 1 A NE ARG 88 C NE ARG 88 1 Y 1 A CZ ARG 88 C CZ ARG 88 1 Y 1 A NH1 ARG 88 C NH1 ARG 88 1 Y 1 A NH2 ARG 88 C NH2 ARG 88 1 Y 1 A CB ARG 220 C CB ARG 220 1 Y 1 A CG ARG 220 C CG ARG 220 1 Y 1 A CD ARG 220 C CD ARG 220 1 Y 1 A NE ARG 220 C NE ARG 220 1 Y 1 A CZ ARG 220 C CZ ARG 220 1 Y 1 A NH1 ARG 220 C NH1 ARG 220 1 Y 1 A NH2 ARG 220 C NH2 ARG 220 1 Y 1 A CB THR 221 C CB THR 221 1 Y 1 A OG1 THR 221 C OG1 THR 221 1 Y 1 A CG2 THR 221 C CG2 THR 221 1 Y 1 A CB TYR 222 C CB TYR 222 1 Y 1 A CG TYR 222 C CG TYR 222 1 Y 1 A CD1 TYR 222 C CD1 TYR 222 1 Y 1 A CD2 TYR 222 C CD2 TYR 222 1 Y 1 A CE1 TYR 222 C CE1 TYR 222 1 Y 1 A CE2 TYR 222 C CE2 TYR 222 1 Y 1 A CZ TYR 222 C CZ TYR 222 1 Y 1 A OH TYR 222 C OH TYR 222 1 Y 1 A ARG 74 49.78 -127.35 1 A ARG 74 48.17 -127.35 1 A ARG 220 116.16 -125.28 1 A THR 221 64.84 126.83 1 A TYR 222 -66.83 -135.17 1 A VAL 237 -136.62 -39.90 1 A GLN 269 -116.95 78.57 30.9 0.2162 0.1962 1.95 30 2158 44852 43716 97.5 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 1NNJ Engh & Huber 1.95 30 306 3042 19 557 2160 0.2216 0.1871 1.97 24 29.042 1.95 77 1PM5 43785 43717 0 0.045 1 10.2 6.7 97.5 1.95 2.06 4.0 0.147 1 3.6 97.5 data reduction MOSFLM data scaling SCALA phasing AMoRE refinement CNS VERSION 1.1 data scaling CCP4 (SCALA) Crystal structure of wild type Lactococcus lactis Fpg complexed to a tetrahydrofuran containing DNA 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 6 N N 6 N N 6 N N the biological assembly corresponds to one Fpg molecule and one DNA duplex A GLU 2 C GLU 2 HELX_P A VAL 18 C VAL 18 1 1 17 A TYR 29 C TYR 29 HELX_P A VAL 33 C VAL 33 5 2 5 A GLY 36 C GLY 36 HELX_P A THR 45 C THR 45 1 3 10 A GLN 121 C GLN 121 HELX_P A LYS 130 C LYS 130 1 4 10 A ASP 141 C ASP 141 HELX_P A SER 152 C SER 152 1 5 12 A LYS 155 C LYS 155 HELX_P A GLU 162 C GLU 162 1 6 8 A GLY 170 C GLY 170 HELX_P A ALA 181 C ALA 181 1 7 12 A GLU 188 C GLU 188 HELX_P A LEU 192 C LEU 192 5 8 5 A ILE 193 C ILE 193 HELX_P A LEU 214 C LEU 214 1 9 22 A LYS 230 C LYS 230 HELX_P A LEU 235 C LEU 235 5 10 6 covale 1.602 both D DT 6 A O3' DT 6 1_555 D 3DR 7 A P 3DR 7 1_555 covale 1.598 both D 3DR 7 A O3' 3DR 7 1_555 D DT 8 A P DT 8 1_555 metalc 2.389 A CYS 245 C SG CYS 245 1_555 A ZN 300 D ZN ZN 1_555 metalc 2.472 A CYS 248 C SG CYS 248 1_555 A ZN 300 D ZN ZN 1_555 metalc 2.215 A CYS 265 C SG CYS 265 1_555 A ZN 300 D ZN ZN 1_555 metalc 2.363 A CYS 268 C SG CYS 268 1_555 A ZN 300 D ZN ZN 1_555 hydrog WATSON-CRICK D DT 2 A N3 DT 2 1_555 E DA 28 B N1 DA 14 1_555 hydrog WATSON-CRICK D DT 2 A O4 DT 2 1_555 E DA 28 B N6 DA 14 1_555 hydrog WATSON-CRICK D DC 3 A N3 DC 3 1_555 E DG 27 B N1 DG 13 1_555 hydrog WATSON-CRICK D DC 3 A N4 DC 3 1_555 E DG 27 B O6 DG 13 1_555 hydrog WATSON-CRICK D DC 3 A O2 DC 3 1_555 E DG 27 B N2 DG 13 1_555 hydrog WATSON-CRICK D DT 4 A N3 DT 4 1_555 E DA 26 B N1 DA 12 1_555 hydrog WATSON-CRICK D DT 4 A O4 DT 4 1_555 E DA 26 B N6 DA 12 1_555 hydrog WATSON-CRICK D DT 5 A N3 DT 5 1_555 E DA 25 B N1 DA 11 1_555 hydrog WATSON-CRICK D DT 5 A O4 DT 5 1_555 E DA 25 B N6 DA 11 1_555 hydrog WATSON-CRICK D DT 6 A N3 DT 6 1_555 E DA 24 B N1 DA 10 1_555 hydrog WATSON-CRICK D DT 6 A O4 DT 6 1_555 E DA 24 B N6 DA 10 1_555 hydrog WATSON-CRICK D DT 8 A N3 DT 8 1_555 E DA 22 B N1 DA 8 1_555 hydrog WATSON-CRICK D DT 8 A O4 DT 8 1_555 E DA 22 B N6 DA 8 1_555 hydrog WATSON-CRICK D DT 9 A N3 DT 9 1_555 E DA 21 B N1 DA 7 1_555 hydrog WATSON-CRICK D DT 9 A O4 DT 9 1_555 E DA 21 B N6 DA 7 1_555 hydrog WATSON-CRICK D DT 10 A N3 DT 10 1_555 E DA 20 B N1 DA 6 1_555 hydrog WATSON-CRICK D DT 10 A O4 DT 10 1_555 E DA 20 B N6 DA 6 1_555 hydrog WATSON-CRICK D DC 11 A N3 DC 11 1_555 E DG 19 B N1 DG 5 1_555 hydrog WATSON-CRICK D DC 11 A N4 DC 11 1_555 E DG 19 B O6 DG 5 1_555 hydrog WATSON-CRICK D DC 11 A O2 DC 11 1_555 E DG 19 B N2 DG 5 1_555 hydrog WATSON-CRICK D DT 12 A N3 DT 12 1_555 E DA 18 B N1 DA 4 1_555 hydrog WATSON-CRICK D DT 12 A O4 DT 12 1_555 E DA 18 B N6 DA 4 1_555 hydrog WATSON-CRICK D DC 13 A N3 DC 13 1_555 E DG 17 B N1 DG 3 1_555 hydrog WATSON-CRICK D DC 13 A N4 DC 13 1_555 E DG 17 B O6 DG 3 1_555 hydrog WATSON-CRICK D DC 13 A O2 DC 13 1_555 E DG 17 B N2 DG 3 1_555 hydrog WATSON-CRICK D DG 14 A N1 DG 14 1_555 E DC 16 B N3 DC 2 1_555 hydrog WATSON-CRICK D DG 14 A N2 DG 14 1_555 E DC 16 B O2 DC 2 1_555 hydrog WATSON-CRICK D DG 14 A O6 DG 14 1_555 E DC 16 B N4 DC 2 1_555 hydrolase/DNA DNA repair, Fpg, MutM, abasic site, hydrolase-DNA COMPLEX FPG_LACLC UNP 3 2 P42371 PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYR LATLDAPREKHDHLTMKFADGQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYDEDFDEKLFREKLRKSTKKIKPY LLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYG KTGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK 1PM5 PDB 1 1PM5 1PM5 PDB 2 1PM5 2 273 1PM5 1 271 P42371 A 1 1 271 1 14 1PM5 1 14 1PM5 D 2 1 14 15 28 1PM5 15 28 1PM5 E 3 1 14 1 ASP SEE REMARK 999 1PM5 A P42371 UNP 138 4 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 24 C SER 24 A ALA 27 C ALA 27 A ASP 92 C ASP 92 A LYS 97 C LYS 97 A GLN 102 C GLN 102 A ALA 106 C ALA 106 A LYS 78 C LYS 78 A ALA 82 C ALA 82 A ILE 49 C ILE 49 A ARG 55 C ARG 55 A TYR 58 C TYR 58 A ILE 63 C ILE 63 A PHE 67 C PHE 67 A HIS 72 C HIS 72 A THR 113 C THR 113 A SER 118 C SER 118 A GLN 253 C GLN 253 A VAL 257 C VAL 257 A ARG 260 C ARG 260 A PHE 264 C PHE 264 BINDING SITE FOR RESIDUE ZN A 300 A ZN 300 Software 4 BINDING SITE FOR RESIDUE GOL A 1001 A GOL 1001 Software 7 BINDING SITE FOR RESIDUE GOL A 1003 A GOL 1003 Software 7 BINDING SITE FOR RESIDUE GOL A 1004 A GOL 1004 Software 11 A CYS 245 C CYS 245 4 1_555 A CYS 248 C CYS 248 4 1_555 A CYS 265 C CYS 265 4 1_555 A CYS 268 C CYS 268 4 1_555 A ARG 16 C ARG 16 7 1_555 A GLN 20 C GLN 20 7 1_555 A LEU 81 C LEU 81 7 1_555 A THR 83 C THR 83 7 8_775 A ASP 85 C ASP 85 7 8_775 A ASP 100 C ASP 100 7 1_555 A GLY 101 C GLY 101 7 1_555 A GLY 259 C GLY 259 7 1_555 A ARG 260 C ARG 260 7 1_555 A HOH 1193 J HOH 7 1_555 A HOH 1245 J HOH 7 1_555 D DT 8 A DT 8 7 1_555 D DT 9 A DT 9 7 1_555 E DA 21 B DA 7 7 1_555 A TYR 58 C TYR 58 11 1_555 A HIS 72 C HIS 72 11 1_555 A ARG 74 C ARG 74 11 1_555 A THR 113 C THR 113 11 1_555 A GLU 115 C GLU 115 11 1_555 A TYR 125 C TYR 125 11 1_555 A LYS 129 C LYS 129 11 1_555 A HOH 1108 J HOH 11 1_555 A HOH 1114 J HOH 11 1_555 D DT 9 A DT 9 11 1_555 D DT 10 A DT 10 11 1_555 92 P 41 21 2