1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Valle, M.
Zavialov, A.
Sengupta, J.
Rawat, U.
Ehrenberg, M.
Frank, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90
90
90
1
1
1
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
R
C
N
171
N
O
N
172
R
C
Y
173
N
N
Y
174
N
C
Y
175
N
N
Y
176
N
C
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
N
N
182
N
N
Y
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
S
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
N
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
S
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
R
C
N
416
N
O
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
N
439
N
O
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
O
N
453
N
P
N
454
N
O
N
455
N
O
N
456
N
O
N
457
N
C
N
458
R
C
N
459
N
O
N
460
S
C
N
461
N
O
N
462
R
C
N
463
N
O
N
464
R
C
N
465
N
N
N
466
N
C
N
467
N
O
N
468
N
N
N
469
N
C
N
470
N
O
N
471
N
C
N
472
N
C
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
N
N
487
S
C
N
488
N
C
N
489
N
O
N
490
N
C
N
491
N
C
N
492
N
C
N
493
N
O
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
sing
Y
256
N
doub
Y
257
N
doub
N
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
doub
N
437
N
sing
Y
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
doub
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
114
123
134
10.1016/S0092-8674(03)00476-8
12859903
Locking and Unlocking of Ribosomal Motions
2003
10.2210/pdb1pn7/pdb
pdb_00001pn7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
METHOD--Manual fitting in O
OTHER
REAL
1GIX
1
1GIX
PDB
experimental model
1GIY
2
1GIY
PDB
experimental model
2.82
SPIDER package. Crystal Structure of Thermus Thermophilus 70S ribosome
1PN7
TMV
3D projection matching; conjugate gradients with regularization
10.8
POINT
7.5
CTF correction of 3D-maps by Wiener filtration
E.coli 70S ribosome
0
RIBOSOME
P-tRNA
1
30S ribosomal protein S12
1
50S ribosomal protein L11
1
PARTICLE
1
1
SINGLE PARTICLE
20
KODAK SO-163 FILM
200
49696
2001-06-01
FIELD EMISSION GUN
FLOOD BEAM
FEI TECNAI F20
BRIGHT FIELD
2.0
4000.
1500.
50000
1
93
0
0
Quantifoil holley-carbon film grids
1PN7
C1
32
NO
NO
NO
YES
ETHANE
Rapid-freezing in liquid ethane
1PN7
20016.959
P-tRNA
1
syn
polymer
13804.311
30S ribosomal protein S12
1
nat
polymer
14294.913
50S ribosomal protein L11
1
nat
polymer
no
no
GCGGAUUUACUCAGGGGAGAGCCCAGAUAAAUGGAGUCUGUGCGUCCACAGAAUUCGCACCA
GCGGAUUUACUCAGGGGAGAGCCCAGAUAAAUGGAGUCUGUGCGUCCACAGAAUUCGCACCA
C
polyribonucleotide
no
no
PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL
IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEA
PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL
IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEA
O
polypeptide(L)
no
no
QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEK
GSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV
QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEK
GSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermus
sample
274
Thermus thermophilus
Thermotoga
sample
2336
Thermotoga maritima
chem_comp_atom
chem_comp_bond
database_2
em_3d_fitting_list
em_image_scans
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2003-07-15
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_em_3d_fitting_list.accession_code
_em_3d_fitting_list.initial_refinement_model_id
_em_3d_fitting_list.source_name
_em_3d_fitting_list.type
P ATOMS ONLY
CA ATOMS ONLY
CA ATOMS ONLY
Crystal structure of the Ribosome at 5.5A resolution -- 30S Ribosome subunit, three tRNA, and mRNA molecules
Crystal structure of the Ribosome at 5.5A resolution -- 50S Ribosome subunit
Elongation Factor-G, E.coli 70S ribosome, Post-termination complex, Fitting of crystal structure, Cryo-EM
Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex
The structure contains C alpha atoms only
RCSB
Y
RCSB
2003-06-12
REL
1GIX
PDB
experimental model
1GIY
PDB
experimental model
G
1
n
1
G
1
C
C
2
n
2
C
2
C
G
3
n
3
G
3
C
G
4
n
4
G
4
C
A
5
n
5
A
5
C
U
6
n
6
U
6
C
U
7
n
7
U
7
C
U
8
n
8
U
8
C
A
9
n
9
A
9
C
C
11
n
10
C
11
C
U
12
n
11
U
12
C
C
13
n
12
C
13
C
A
14
n
13
A
14
C
G
15
n
14
G
15
C
G
18
n
15
G
18
C
G
19
n
16
G
19
C
G
20
n
17
G
20
C
A
21
n
18
A
21
C
G
22
n
19
G
22
C
A
23
n
20
A
23
C
G
24
n
21
G
24
C
C
25
n
22
C
25
C
C
27
n
23
C
27
C
C
28
n
24
C
28
C
A
29
n
25
A
29
C
G
30
n
26
G
30
C
A
31
n
27
A
31
C
U
33
n
28
U
33
C
A
35
n
29
A
35
C
A
36
n
30
A
36
C
A
38
n
31
A
38
C
U
41
n
32
U
41
C
G
42
n
33
G
42
C
G
43
n
34
G
43
C
A
44
n
35
A
44
C
G
45
n
36
G
45
C
U
47
n
37
U
47
C
C
48
n
38
C
48
C
U
50
n
39
U
50
C
G
51
n
40
G
51
C
U
52
n
41
U
52
C
G
53
n
42
G
53
C
C
56
n
43
C
56
C
G
57
n
44
G
57
C
U
59
n
45
U
59
C
C
60
n
46
C
60
C
C
61
n
47
C
61
C
A
62
n
48
A
62
C
C
63
n
49
C
63
C
A
64
n
50
A
64
C
G
65
n
51
G
65
C
A
66
n
52
A
66
C
A
67
n
53
A
67
C
U
68
n
54
U
68
C
U
69
n
55
U
69
C
C
70
n
56
C
70
C
G
71
n
57
G
71
C
C
72
n
58
C
72
C
A
73
n
59
A
73
C
C
74
n
60
C
74
C
C
75
n
61
C
75
C
A
76
n
62
A
76
C
PRO
5
n
1
PRO
5
O
THR
6
n
2
THR
6
O
ILE
7
n
3
ILE
7
O
ASN
8
n
4
ASN
8
O
GLN
9
n
5
GLN
9
O
LEU
10
n
6
LEU
10
O
VAL
11
n
7
VAL
11
O
ARG
12
n
8
ARG
12
O
LYS
13
n
9
LYS
13
O
GLY
14
n
10
GLY
14
O
ARG
15
n
11
ARG
15
O
GLU
16
n
12
GLU
16
O
LYS
17
n
13
LYS
17
O
VAL
18
n
14
VAL
18
O
ARG
19
n
15
ARG
19
O
LYS
20
n
16
LYS
20
O
LYS
21
n
17
LYS
21
O
SER
22
n
18
SER
22
O
LYS
23
n
19
LYS
23
O
VAL
24
n
20
VAL
24
O
PRO
25
n
21
PRO
25
O
ALA
26
n
22
ALA
26
O
LEU
27
n
23
LEU
27
O
LYS
28
n
24
LYS
28
O
GLY
29
n
25
GLY
29
O
ALA
30
n
26
ALA
30
O
PRO
31
n
27
PRO
31
O
PHE
32
n
28
PHE
32
O
ARG
33
n
29
ARG
33
O
ARG
34
n
30
ARG
34
O
GLY
35
n
31
GLY
35
O
VAL
36
n
32
VAL
36
O
CYS
37
n
33
CYS
37
O
THR
38
n
34
THR
38
O
VAL
39
n
35
VAL
39
O
VAL
40
n
36
VAL
40
O
ARG
41
n
37
ARG
41
O
THR
42
n
38
THR
42
O
VAL
43
n
39
VAL
43
O
THR
44
n
40
THR
44
O
PRO
45
n
41
PRO
45
O
LYS
46
n
42
LYS
46
O
LYS
47
n
43
LYS
47
O
PRO
48
n
44
PRO
48
O
ASN
49
n
45
ASN
49
O
SER
50
n
46
SER
50
O
ALA
51
n
47
ALA
51
O
LEU
52
n
48
LEU
52
O
ARG
53
n
49
ARG
53
O
LYS
54
n
50
LYS
54
O
VAL
55
n
51
VAL
55
O
ALA
56
n
52
ALA
56
O
LYS
57
n
53
LYS
57
O
VAL
58
n
54
VAL
58
O
ARG
59
n
55
ARG
59
O
LEU
60
n
56
LEU
60
O
THR
61
n
57
THR
61
O
SER
62
n
58
SER
62
O
GLY
63
n
59
GLY
63
O
TYR
64
n
60
TYR
64
O
GLU
65
n
61
GLU
65
O
VAL
66
n
62
VAL
66
O
THR
67
n
63
THR
67
O
ALA
68
n
64
ALA
68
O
TYR
69
n
65
TYR
69
O
ILE
70
n
66
ILE
70
O
PRO
71
n
67
PRO
71
O
GLY
72
n
68
GLY
72
O
GLU
73
n
69
GLU
73
O
GLY
74
n
70
GLY
74
O
HIS
75
n
71
HIS
75
O
ASN
76
n
72
ASN
76
O
LEU
77
n
73
LEU
77
O
GLN
78
n
74
GLN
78
O
GLU
79
n
75
GLU
79
O
HIS
80
n
76
HIS
80
O
SER
81
n
77
SER
81
O
VAL
82
n
78
VAL
82
O
VAL
83
n
79
VAL
83
O
LEU
84
n
80
LEU
84
O
ILE
85
n
81
ILE
85
O
ARG
86
n
82
ARG
86
O
GLY
87
n
83
GLY
87
O
GLY
88
n
84
GLY
88
O
ARG
89
n
85
ARG
89
O
VAL
90
n
86
VAL
90
O
LYS
91
n
87
LYS
91
O
ASP
92
n
88
ASP
92
O
LEU
93
n
89
LEU
93
O
PRO
94
n
90
PRO
94
O
GLY
95
n
91
GLY
95
O
VAL
96
n
92
VAL
96
O
ARG
97
n
93
ARG
97
O
TYR
98
n
94
TYR
98
O
HIS
99
n
95
HIS
99
O
ILE
100
n
96
ILE
100
O
VAL
101
n
97
VAL
101
O
ARG
102
n
98
ARG
102
O
GLY
103
n
99
GLY
103
O
VAL
104
n
100
VAL
104
O
TYR
105
n
101
TYR
105
O
ASP
106
n
102
ASP
106
O
ALA
107
n
103
ALA
107
O
ALA
108
n
104
ALA
108
O
GLY
109
n
105
GLY
109
O
VAL
110
n
106
VAL
110
O
LYS
111
n
107
LYS
111
O
ASP
112
n
108
ASP
112
O
ARG
113
n
109
ARG
113
O
LYS
114
n
110
LYS
114
O
LYS
115
n
111
LYS
115
O
SER
116
n
112
SER
116
O
ARG
117
n
113
ARG
117
O
SER
118
n
114
SER
118
O
LYS
119
n
115
LYS
119
O
TYR
120
n
116
TYR
120
O
GLY
121
n
117
GLY
121
O
THR
122
n
118
THR
122
O
LYS
123
n
119
LYS
123
O
LYS
124
n
120
LYS
124
O
PRO
125
n
121
PRO
125
O
LYS
126
n
122
LYS
126
O
GLU
127
n
123
GLU
127
O
ALA
128
n
124
ALA
128
O
GLN
8
n
1
GLN
8
L
ILE
9
n
2
ILE
9
L
LYS
10
n
3
LYS
10
L
LEU
11
n
4
LEU
11
L
GLN
12
n
5
GLN
12
L
LEU
13
n
6
LEU
13
L
PRO
14
n
7
PRO
14
L
ALA
15
n
8
ALA
15
L
GLY
16
n
9
GLY
16
L
LYS
17
n
10
LYS
17
L
ALA
18
n
11
ALA
18
L
THR
19
n
12
THR
19
L
PRO
20
n
13
PRO
20
L
ALA
21
n
14
ALA
21
L
PRO
22
n
15
PRO
22
L
PRO
23
n
16
PRO
23
L
VAL
24
n
17
VAL
24
L
GLY
25
n
18
GLY
25
L
PRO
26
n
19
PRO
26
L
ALA
27
n
20
ALA
27
L
LEU
28
n
21
LEU
28
L
GLY
29
n
22
GLY
29
L
GLN
30
n
23
GLN
30
L
HIS
31
n
24
HIS
31
L
GLY
32
n
25
GLY
32
L
VAL
33
n
26
VAL
33
L
ASN
34
n
27
ASN
34
L
ILE
35
n
28
ILE
35
L
MET
36
n
29
MET
36
L
GLU
37
n
30
GLU
37
L
PHE
38
n
31
PHE
38
L
CYS
39
n
32
CYS
39
L
LYS
40
n
33
LYS
40
L
ARG
41
n
34
ARG
41
L
PHE
42
n
35
PHE
42
L
ASN
43
n
36
ASN
43
L
ALA
44
n
37
ALA
44
L
GLU
45
n
38
GLU
45
L
THR
46
n
39
THR
46
L
ALA
47
n
40
ALA
47
L
ASP
48
n
41
ASP
48
L
LYS
49
n
42
LYS
49
L
ALA
50
n
43
ALA
50
L
GLY
51
n
44
GLY
51
L
MET
52
n
45
MET
52
L
ILE
53
n
46
ILE
53
L
LEU
54
n
47
LEU
54
L
PRO
55
n
48
PRO
55
L
VAL
56
n
49
VAL
56
L
VAL
57
n
50
VAL
57
L
ILE
58
n
51
ILE
58
L
THR
59
n
52
THR
59
L
VAL
60
n
53
VAL
60
L
TYR
61
n
54
TYR
61
L
GLU
62
n
55
GLU
62
L
ASP
63
n
56
ASP
63
L
LYS
64
n
57
LYS
64
L
SER
65
n
58
SER
65
L
PHE
66
n
59
PHE
66
L
THR
67
n
60
THR
67
L
PHE
68
n
61
PHE
68
L
ILE
69
n
62
ILE
69
L
ILE
70
n
63
ILE
70
L
LYS
71
n
64
LYS
71
L
THR
72
n
65
THR
72
L
PRO
73
n
66
PRO
73
L
PRO
74
n
67
PRO
74
L
ALA
75
n
68
ALA
75
L
SER
76
n
69
SER
76
L
PHE
77
n
70
PHE
77
L
LEU
78
n
71
LEU
78
L
LEU
79
n
72
LEU
79
L
LYS
80
n
73
LYS
80
L
LYS
81
n
74
LYS
81
L
ALA
82
n
75
ALA
82
L
ALA
83
n
76
ALA
83
L
GLY
84
n
77
GLY
84
L
ILE
85
n
78
ILE
85
L
GLU
86
n
79
GLU
86
L
LYS
87
n
80
LYS
87
L
GLY
88
n
81
GLY
88
L
SER
89
n
82
SER
89
L
SER
90
n
83
SER
90
L
GLU
91
n
84
GLU
91
L
PRO
92
n
85
PRO
92
L
LYS
93
n
86
LYS
93
L
ARG
94
n
87
ARG
94
L
LYS
95
n
88
LYS
95
L
ILE
96
n
89
ILE
96
L
VAL
97
n
90
VAL
97
L
GLY
98
n
91
GLY
98
L
LYS
99
n
92
LYS
99
L
VAL
100
n
93
VAL
100
L
THR
101
n
94
THR
101
L
ARG
102
n
95
ARG
102
L
LYS
103
n
96
LYS
103
L
GLN
104
n
97
GLN
104
L
ILE
105
n
98
ILE
105
L
GLU
106
n
99
GLU
106
L
GLU
107
n
100
GLU
107
L
ILE
108
n
101
ILE
108
L
ALA
109
n
102
ALA
109
L
LYS
110
n
103
LYS
110
L
THR
111
n
104
THR
111
L
LYS
112
n
105
LYS
112
L
MET
113
n
106
MET
113
L
PRO
114
n
107
PRO
114
L
ASP
115
n
108
ASP
115
L
LEU
116
n
109
LEU
116
L
ASN
117
n
110
ASN
117
L
ALA
118
n
111
ALA
118
L
ASN
119
n
112
ASN
119
L
SER
120
n
113
SER
120
L
LEU
121
n
114
LEU
121
L
GLU
122
n
115
GLU
122
L
ALA
123
n
116
ALA
123
L
ALA
124
n
117
ALA
124
L
MET
125
n
118
MET
125
L
LYS
126
n
119
LYS
126
L
ILE
127
n
120
ILE
127
L
ILE
128
n
121
ILE
128
L
GLU
129
n
122
GLU
129
L
GLY
130
n
123
GLY
130
L
THR
131
n
124
THR
131
L
ALA
132
n
125
ALA
132
L
LYS
133
n
126
LYS
133
L
SER
134
n
127
SER
134
L
MET
135
n
128
MET
135
L
GLY
136
n
129
GLY
136
L
ILE
137
n
130
ILE
137
L
GLU
138
n
131
GLU
138
L
VAL
139
n
132
VAL
139
L
VAL
140
n
133
VAL
140
L
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0
319
0
62
257
Coordinates of S12, L11 proteins and P-tRNA, from the 70S X-ray structure aligned to the 70S Cryo-EM map of E.coli ribosome
1
N
N
2
N
N
3
N
N
RNA binding protein/RNA
ribosomal protein, tRNA binding protein, tRNA, RNA binding protein-RNA COMPLEX
RS12_THET8
UNP
2
1
Q5SHN3
PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL
IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEA
RL11_THEMA
UNP
3
7
P29395
QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEK
GSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV
1PN7
PDB
1
1PN7
1
124
1PN7
5
128
Q5SHN3
O
1
1
124
7
139
1PN7
8
140
P29395
L
2
1
133
1
76
1PN7
1
76
1PN7
C
3
1
62
1
P 1