0.018591
0.000000
0.000000
0.000000
0.018591
0.000000
0.000000
0.000000
0.012121
0.00000
0.00000
0.00000
Singh, G.
Jayasankar, J.
Sharma, S.
Kaur, P.
Singh, T.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
53.790
53.790
82.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C7 H14 O2
130.185
HEPTANOIC ACID
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal structure of a complex formed between krait venom phospholipase A2 and heptanoic acid at 2.7 A resolution.
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
mirrors
IMAGE PLATE
2003-04-03
MARRESEARCH
osmic mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
13213.789
Phospholipase A2
3.1.1.4
Phospholipase A2
1
nat
polymer
22.990
SODIUM ION
1
syn
non-polymer
130.185
HEPTANOIC ACID
1
syn
non-polymer
18.015
water
61
nat
water
no
no
NLYQLMNMIQCANTRTWPSYTNYGCYCGKGGSGTPVDDLDRCCYTHDHCYNDAKNIDGCNPVTKTYSYTCTEPTITCNDS
KDKCARFVCDCDRTAAICFAKAPYNTSNVMIRSTNSCQ
NLYQLMNMIQCANTRTWPSYTNYGCYCGKGGSGTPVDDLDRCCYTHDHCYNDAKNIDGCNPVTKTYSYTCTEPTITCNDS
KDKCARFVCDCDRTAAICFAKAPYNTSNVMIRSTNSCQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Venom protein
Bungarus
sample
132961
Bungarus caeruleus
1
2.26
45.51
VAPOR DIFFUSION, SITTING DROP
8.5
0.05 M Tris-HCL, 2.4 M NaCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
repository
Initial release
Version format compliance
Version format compliance
1
0
2004-05-04
1
1
2008-04-29
1
2
2011-07-13
Sequence and Crystal Structure Of A Basic Phospholipase A2 From Common Krait (Bungarus Caeruleus) At 2.4 Resolution: Identification and Characterization Of Its Pharmacological Sites.
RCSB
Y
RCSB
2003-06-14
REL
NA
SODIUM ION
SHV
HEPTANOIC ACID
HOH
water
NA
68
2
NA
NA
121
A
SHV
69
3
SHV
SHV
122
A
HOH
1
4
HOH
HOH
123
A
HOH
2
4
HOH
HOH
124
A
HOH
3
4
HOH
HOH
125
A
HOH
4
4
HOH
HOH
126
A
HOH
5
4
HOH
HOH
127
A
HOH
6
4
HOH
HOH
128
A
HOH
7
4
HOH
HOH
129
A
HOH
8
4
HOH
HOH
130
A
HOH
9
4
HOH
HOH
131
A
HOH
10
4
HOH
HOH
132
A
HOH
11
4
HOH
HOH
133
A
HOH
13
4
HOH
HOH
134
A
HOH
14
4
HOH
HOH
135
A
HOH
15
4
HOH
HOH
136
A
HOH
17
4
HOH
HOH
137
A
HOH
18
4
HOH
HOH
138
A
HOH
19
4
HOH
HOH
139
A
HOH
20
4
HOH
HOH
140
A
HOH
21
4
HOH
HOH
141
A
HOH
22
4
HOH
HOH
142
A
HOH
23
4
HOH
HOH
143
A
HOH
24
4
HOH
HOH
144
A
HOH
25
4
HOH
HOH
145
A
HOH
27
4
HOH
HOH
146
A
HOH
28
4
HOH
HOH
147
A
HOH
29
4
HOH
HOH
148
A
HOH
30
4
HOH
HOH
149
A
HOH
31
4
HOH
HOH
150
A
HOH
32
4
HOH
HOH
151
A
HOH
33
4
HOH
HOH
152
A
HOH
34
4
HOH
HOH
153
A
HOH
35
4
HOH
HOH
154
A
HOH
36
4
HOH
HOH
155
A
HOH
37
4
HOH
HOH
156
A
HOH
39
4
HOH
HOH
157
A
HOH
40
4
HOH
HOH
158
A
HOH
41
4
HOH
HOH
159
A
HOH
42
4
HOH
HOH
160
A
HOH
43
4
HOH
HOH
161
A
HOH
44
4
HOH
HOH
162
A
HOH
46
4
HOH
HOH
163
A
HOH
47
4
HOH
HOH
164
A
HOH
48
4
HOH
HOH
165
A
HOH
49
4
HOH
HOH
166
A
HOH
50
4
HOH
HOH
167
A
HOH
51
4
HOH
HOH
168
A
HOH
52
4
HOH
HOH
169
A
HOH
53
4
HOH
HOH
170
A
HOH
55
4
HOH
HOH
171
A
HOH
56
4
HOH
HOH
172
A
HOH
57
4
HOH
HOH
173
A
HOH
58
4
HOH
HOH
174
A
HOH
59
4
HOH
HOH
175
A
HOH
60
4
HOH
HOH
176
A
HOH
61
4
HOH
HOH
177
A
HOH
62
4
HOH
HOH
178
A
HOH
63
4
HOH
HOH
179
A
HOH
64
4
HOH
HOH
180
A
HOH
65
4
HOH
HOH
181
A
HOH
66
4
HOH
HOH
182
A
HOH
67
4
HOH
HOH
183
A
ASN
1
n
1
ASN
1
A
LEU
2
n
2
LEU
2
A
TYR
3
n
3
TYR
3
A
GLN
4
n
4
GLN
4
A
LEU
5
n
5
LEU
5
A
MET
6
n
6
MET
6
A
ASN
7
n
7
ASN
7
A
MET
8
n
8
MET
8
A
ILE
9
n
9
ILE
9
A
GLN
10
n
10
GLN
10
A
CYS
11
n
11
CYS
11
A
ALA
12
n
12
ALA
12
A
ASN
13
n
13
ASN
13
A
THR
14
n
14
THR
14
A
ARG
17
n
15
ARG
17
A
THR
18
n
16
THR
18
A
TRP
19
n
17
TRP
19
A
PRO
20
n
18
PRO
20
A
SER
21
n
19
SER
21
A
TYR
22
n
20
TYR
22
A
THR
23
n
21
THR
23
A
ASN
24
n
22
ASN
24
A
TYR
25
n
23
TYR
25
A
GLY
26
n
24
GLY
26
A
CYS
27
n
25
CYS
27
A
TYR
28
n
26
TYR
28
A
CYS
29
n
27
CYS
29
A
GLY
30
n
28
GLY
30
A
LYS
31
n
29
LYS
31
A
GLY
32
n
30
GLY
32
A
GLY
33
n
31
GLY
33
A
SER
34
n
32
SER
34
A
GLY
35
n
33
GLY
35
A
THR
36
n
34
THR
36
A
PRO
37
n
35
PRO
37
A
VAL
38
n
36
VAL
38
A
ASP
39
n
37
ASP
39
A
ASP
40
n
38
ASP
40
A
LEU
41
n
39
LEU
41
A
ASP
42
n
40
ASP
42
A
ARG
43
n
41
ARG
43
A
CYS
44
n
42
CYS
44
A
CYS
45
n
43
CYS
45
A
TYR
46
n
44
TYR
46
A
THR
47
n
45
THR
47
A
HIS
48
n
46
HIS
48
A
ASP
49
n
47
ASP
49
A
HIS
50
n
48
HIS
50
A
CYS
51
n
49
CYS
51
A
TYR
52
n
50
TYR
52
A
ASN
53
n
51
ASN
53
A
ASP
54
n
52
ASP
54
A
ALA
55
n
53
ALA
55
A
LYS
56
n
54
LYS
56
A
ASN
57
n
55
ASN
57
A
ILE
58
n
56
ILE
58
A
ASP
59
n
57
ASP
59
A
GLY
60
n
58
GLY
60
A
CYS
61
n
59
CYS
61
A
ASN
62
n
60
ASN
62
A
PRO
63
n
61
PRO
63
A
VAL
64
n
62
VAL
64
A
THR
65
n
63
THR
65
A
LYS
66
n
64
LYS
66
A
THR
67
n
65
THR
67
A
TYR
68
n
66
TYR
68
A
SER
69
n
67
SER
69
A
TYR
70
n
68
TYR
70
A
THR
71
n
69
THR
71
A
CYS
72
n
70
CYS
72
A
THR
73
n
71
THR
73
A
GLU
74
n
72
GLU
74
A
PRO
75
n
73
PRO
75
A
THR
76
n
74
THR
76
A
ILE
77
n
75
ILE
77
A
THR
78
n
76
THR
78
A
CYS
79
n
77
CYS
79
A
ASN
80
n
78
ASN
80
A
ASP
81
n
79
ASP
81
A
SER
82
n
80
SER
82
A
LYS
83
n
81
LYS
83
A
ASP
84
n
82
ASP
84
A
LYS
85
n
83
LYS
85
A
CYS
86
n
84
CYS
86
A
ALA
87
n
85
ALA
87
A
ARG
88
n
86
ARG
88
A
PHE
89
n
87
PHE
89
A
VAL
90
n
88
VAL
90
A
CYS
91
n
89
CYS
91
A
ASP
92
n
90
ASP
92
A
CYS
93
n
91
CYS
93
A
ASP
94
n
92
ASP
94
A
ARG
95
n
93
ARG
95
A
THR
96
n
94
THR
96
A
ALA
97
n
95
ALA
97
A
ALA
98
n
96
ALA
98
A
ILE
99
n
97
ILE
99
A
CYS
100
n
98
CYS
100
A
PHE
101
n
99
PHE
101
A
ALA
102
n
100
ALA
102
A
LYS
103
n
101
LYS
103
A
ALA
104
n
102
ALA
104
A
PRO
105
n
103
PRO
105
A
TYR
106
n
104
TYR
106
A
ASN
107
n
105
ASN
107
A
THR
108
n
106
THR
108
A
SER
109
n
107
SER
109
A
ASN
110
n
108
ASN
110
A
VAL
111
n
109
VAL
111
A
MET
112
n
110
MET
112
A
ILE
113
n
111
ILE
113
A
ARG
114
n
112
ARG
114
A
SER
115
n
113
SER
115
A
THR
116
n
114
THR
116
A
ASN
117
n
115
ASN
117
A
SER
118
n
116
SER
118
A
CYS
119
n
117
CYS
119
A
GLN
120
n
118
GLN
120
A
author_defined_assembly
1
monomeric
A
ASP
49
A
OD2
ASP
47
1_555
A
NA
121
B
NA
NA
1_555
A
TYR
28
A
O
TYR
26
1_555
128.0
A
ASP
49
A
OD2
ASP
47
1_555
A
NA
121
B
NA
NA
1_555
A
GLY
30
A
O
GLY
28
1_555
142.3
A
TYR
28
A
O
TYR
26
1_555
A
NA
121
B
NA
NA
1_555
A
GLY
30
A
O
GLY
28
1_555
74.0
A
ASP
49
A
OD2
ASP
47
1_555
A
NA
121
B
NA
NA
1_555
A
GLY
32
A
O
GLY
30
1_555
118.1
A
TYR
28
A
O
TYR
26
1_555
A
NA
121
B
NA
NA
1_555
A
GLY
32
A
O
GLY
30
1_555
92.1
A
GLY
30
A
O
GLY
28
1_555
A
NA
121
B
NA
NA
1_555
A
GLY
32
A
O
GLY
30
1_555
86.7
A
ASP
49
A
OD2
ASP
47
1_555
A
NA
121
B
NA
NA
1_555
A
ASP
49
A
OD1
ASP
47
1_555
48.5
A
TYR
28
A
O
TYR
26
1_555
A
NA
121
B
NA
NA
1_555
A
ASP
49
A
OD1
ASP
47
1_555
92.8
A
GLY
30
A
O
GLY
28
1_555
A
NA
121
B
NA
NA
1_555
A
ASP
49
A
OD1
ASP
47
1_555
108.6
A
GLY
32
A
O
GLY
30
1_555
A
NA
121
B
NA
NA
1_555
A
ASP
49
A
OD1
ASP
47
1_555
164.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
73
A
N
THR
71
A
O
THR
76
A
O
THR
74
1
A
PRO
20
-48.14
-18.10
1
A
ASP
39
-134.50
-155.94
1
A
GLU
74
-29.83
114.69
1
A
SER
82
-127.16
-53.19
1
A
MET
112
-150.72
50.25
1
A
SER
115
57.22
-3.18
1
A
ASN
117
109.87
-16.00
1
A
CYS
119
-102.79
69.81
35.0
1.89
0.00
0.00
1.89
0.00
-3.78
0.23878
0.023
0.20685
0.20685
2.71
19.26
180
3380
5.3
93.9
RANDOM
1786405.83
0.000000
1
RESTRAINED
THROUGHOUT
0.0
FLAT MODEL
54.0772
0.330994
0.47
0.32
5.00
0.73
0.44
2.71
19.26
61
983
10
0
912
0.009
1.4
24.4
0.92
1.17
1.50
1.98
2.00
1.60
2.00
2.49
2.50
0.283
0.063
0.27
2.80
32
473
473
6
6.3
90.2
38.8
2.70
20.00
1PO8
3380
3380
-3
-3
0.17
0.17
1
5.0
2.34
90.1
0.403
2.70
2.8
1.2
568
0.403
2.34
90.3
refinement
CNS
1.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Phospholipase A2 (E.C.3.1.1.4)
Crystal structure of a complex formed between krait venom phospholipase A2 and heptanoic acid at 2.7 A resolution.
1
N
N
2
N
N
3
N
N
4
N
N
A
ASN
1
A
ASN
1
HELX_P
A
ASN
13
A
ASN
13
1
1
13
A
TRP
19
A
TRP
17
HELX_P
A
ASN
24
A
ASN
22
1
2
6
A
ASP
39
A
ASP
37
HELX_P
A
LYS
56
A
LYS
54
1
3
18
A
ASP
84
A
ASP
82
HELX_P
A
ALA
104
A
ALA
102
1
4
21
disulf
2.034
A
CYS
11
A
SG
CYS
11
1_555
A
CYS
72
A
SG
CYS
70
1_555
disulf
2.022
A
CYS
27
A
SG
CYS
25
1_555
A
CYS
119
A
SG
CYS
117
1_555
disulf
2.029
A
CYS
29
A
SG
CYS
27
1_555
A
CYS
45
A
SG
CYS
43
1_555
disulf
2.021
A
CYS
44
A
SG
CYS
42
1_555
A
CYS
100
A
SG
CYS
98
1_555
disulf
2.023
A
CYS
51
A
SG
CYS
49
1_555
A
CYS
93
A
SG
CYS
91
1_555
disulf
2.035
A
CYS
61
A
SG
CYS
59
1_555
A
CYS
86
A
SG
CYS
84
1_555
disulf
2.037
A
CYS
79
A
SG
CYS
77
1_555
A
CYS
91
A
SG
CYS
89
1_555
metalc
2.543
A
NA
121
B
NA
NA
1_555
A
ASP
49
A
OD2
ASP
47
1_555
metalc
2.664
A
TYR
28
A
O
TYR
26
1_555
A
NA
121
B
NA
NA
1_555
metalc
2.698
A
GLY
30
A
O
GLY
28
1_555
A
NA
121
B
NA
NA
1_555
metalc
2.631
A
GLY
32
A
O
GLY
30
1_555
A
NA
121
B
NA
NA
1_555
metalc
2.789
A
ASP
49
A
OD1
ASP
47
1_555
A
NA
121
B
NA
NA
1_555
HYDROLASE
Phospholipase A2, inhibitor, complex, HYDROLASE
A
GLU
74
A
GLU
72
1
A
PRO
75
A
PRO
73
0.94
PA2K_BUNCE
UNP
1
20
Q9DF52
NLYQLMNMIQCANTRTWPSYTNYGCYCGKGGSGTPVDDLDRCCYTHDHCYNDAKNIDGCNPVTKTYSYTCTEPTITCNDS
KDKCARFVCDCDRTAAICFAKAPYNTSNVMIRSTNSCQ
20
137
1PO8
1
120
Q9DF52
A
1
1
118
2
anti-parallel
A
TYR
70
A
TYR
68
A
THR
73
A
THR
71
A
THR
76
A
THR
74
A
CYS
79
A
CYS
77
BINDING SITE FOR RESIDUE NA A 121
Software
5
BINDING SITE FOR RESIDUE SHV A 122
Software
7
A
TYR
28
A
TYR
26
5
1_555
A
GLY
30
A
GLY
28
5
1_555
A
GLY
32
A
GLY
30
5
1_555
A
GLY
33
A
GLY
31
5
1_555
A
ASP
49
A
ASP
47
5
1_555
A
CYS
29
A
CYS
27
7
1_555
A
GLY
30
A
GLY
28
7
1_555
A
LYS
31
A
LYS
29
7
1_555
A
ASP
40
A
ASP
38
7
4_454
A
ARG
43
A
ARG
41
7
4_454
A
CYS
45
A
CYS
43
7
1_555
A
HIS
48
A
HIS
46
7
1_555
92
P 41 21 2