0.018591 0.000000 0.000000 0.000000 0.018591 0.000000 0.000000 0.000000 0.012121 0.00000 0.00000 0.00000 Singh, G. Jayasankar, J. Sharma, S. Kaur, P. Singh, T.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 53.790 53.790 82.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C7 H14 O2 130.185 HEPTANOIC ACID non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Crystal structure of a complex formed between krait venom phospholipase A2 and heptanoic acid at 2.7 A resolution. 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 mirrors IMAGE PLATE 2003-04-03 MARRESEARCH osmic mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 13213.789 Phospholipase A2 3.1.1.4 Phospholipase A2 1 nat polymer 22.990 SODIUM ION 1 syn non-polymer 130.185 HEPTANOIC ACID 1 syn non-polymer 18.015 water 61 nat water no no NLYQLMNMIQCANTRTWPSYTNYGCYCGKGGSGTPVDDLDRCCYTHDHCYNDAKNIDGCNPVTKTYSYTCTEPTITCNDS KDKCARFVCDCDRTAAICFAKAPYNTSNVMIRSTNSCQ NLYQLMNMIQCANTRTWPSYTNYGCYCGKGGSGTPVDDLDRCCYTHDHCYNDAKNIDGCNPVTKTYSYTCTEPTITCNDS KDKCARFVCDCDRTAAICFAKAPYNTSNVMIRSTNSCQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Venom protein Bungarus sample 132961 Bungarus caeruleus 1 2.26 45.51 VAPOR DIFFUSION, SITTING DROP 8.5 0.05 M Tris-HCL, 2.4 M NaCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 repository Initial release Version format compliance Version format compliance 1 0 2004-05-04 1 1 2008-04-29 1 2 2011-07-13 Sequence and Crystal Structure Of A Basic Phospholipase A2 From Common Krait (Bungarus Caeruleus) At 2.4 Resolution: Identification and Characterization Of Its Pharmacological Sites. RCSB Y RCSB 2003-06-14 REL NA SODIUM ION SHV HEPTANOIC ACID HOH water NA 68 2 NA NA 121 A SHV 69 3 SHV SHV 122 A HOH 1 4 HOH HOH 123 A HOH 2 4 HOH HOH 124 A HOH 3 4 HOH HOH 125 A HOH 4 4 HOH HOH 126 A HOH 5 4 HOH HOH 127 A HOH 6 4 HOH HOH 128 A HOH 7 4 HOH HOH 129 A HOH 8 4 HOH HOH 130 A HOH 9 4 HOH HOH 131 A HOH 10 4 HOH HOH 132 A HOH 11 4 HOH HOH 133 A HOH 13 4 HOH HOH 134 A HOH 14 4 HOH HOH 135 A HOH 15 4 HOH HOH 136 A HOH 17 4 HOH HOH 137 A HOH 18 4 HOH HOH 138 A HOH 19 4 HOH HOH 139 A HOH 20 4 HOH HOH 140 A HOH 21 4 HOH HOH 141 A HOH 22 4 HOH HOH 142 A HOH 23 4 HOH HOH 143 A HOH 24 4 HOH HOH 144 A HOH 25 4 HOH HOH 145 A HOH 27 4 HOH HOH 146 A HOH 28 4 HOH HOH 147 A HOH 29 4 HOH HOH 148 A HOH 30 4 HOH HOH 149 A HOH 31 4 HOH HOH 150 A HOH 32 4 HOH HOH 151 A HOH 33 4 HOH HOH 152 A HOH 34 4 HOH HOH 153 A HOH 35 4 HOH HOH 154 A HOH 36 4 HOH HOH 155 A HOH 37 4 HOH HOH 156 A HOH 39 4 HOH HOH 157 A HOH 40 4 HOH HOH 158 A HOH 41 4 HOH HOH 159 A HOH 42 4 HOH HOH 160 A HOH 43 4 HOH HOH 161 A HOH 44 4 HOH HOH 162 A HOH 46 4 HOH HOH 163 A HOH 47 4 HOH HOH 164 A HOH 48 4 HOH HOH 165 A HOH 49 4 HOH HOH 166 A HOH 50 4 HOH HOH 167 A HOH 51 4 HOH HOH 168 A HOH 52 4 HOH HOH 169 A HOH 53 4 HOH HOH 170 A HOH 55 4 HOH HOH 171 A HOH 56 4 HOH HOH 172 A HOH 57 4 HOH HOH 173 A HOH 58 4 HOH HOH 174 A HOH 59 4 HOH HOH 175 A HOH 60 4 HOH HOH 176 A HOH 61 4 HOH HOH 177 A HOH 62 4 HOH HOH 178 A HOH 63 4 HOH HOH 179 A HOH 64 4 HOH HOH 180 A HOH 65 4 HOH HOH 181 A HOH 66 4 HOH HOH 182 A HOH 67 4 HOH HOH 183 A ASN 1 n 1 ASN 1 A LEU 2 n 2 LEU 2 A TYR 3 n 3 TYR 3 A GLN 4 n 4 GLN 4 A LEU 5 n 5 LEU 5 A MET 6 n 6 MET 6 A ASN 7 n 7 ASN 7 A MET 8 n 8 MET 8 A ILE 9 n 9 ILE 9 A GLN 10 n 10 GLN 10 A CYS 11 n 11 CYS 11 A ALA 12 n 12 ALA 12 A ASN 13 n 13 ASN 13 A THR 14 n 14 THR 14 A ARG 17 n 15 ARG 17 A THR 18 n 16 THR 18 A TRP 19 n 17 TRP 19 A PRO 20 n 18 PRO 20 A SER 21 n 19 SER 21 A TYR 22 n 20 TYR 22 A THR 23 n 21 THR 23 A ASN 24 n 22 ASN 24 A TYR 25 n 23 TYR 25 A GLY 26 n 24 GLY 26 A CYS 27 n 25 CYS 27 A TYR 28 n 26 TYR 28 A CYS 29 n 27 CYS 29 A GLY 30 n 28 GLY 30 A LYS 31 n 29 LYS 31 A GLY 32 n 30 GLY 32 A GLY 33 n 31 GLY 33 A SER 34 n 32 SER 34 A GLY 35 n 33 GLY 35 A THR 36 n 34 THR 36 A PRO 37 n 35 PRO 37 A VAL 38 n 36 VAL 38 A ASP 39 n 37 ASP 39 A ASP 40 n 38 ASP 40 A LEU 41 n 39 LEU 41 A ASP 42 n 40 ASP 42 A ARG 43 n 41 ARG 43 A CYS 44 n 42 CYS 44 A CYS 45 n 43 CYS 45 A TYR 46 n 44 TYR 46 A THR 47 n 45 THR 47 A HIS 48 n 46 HIS 48 A ASP 49 n 47 ASP 49 A HIS 50 n 48 HIS 50 A CYS 51 n 49 CYS 51 A TYR 52 n 50 TYR 52 A ASN 53 n 51 ASN 53 A ASP 54 n 52 ASP 54 A ALA 55 n 53 ALA 55 A LYS 56 n 54 LYS 56 A ASN 57 n 55 ASN 57 A ILE 58 n 56 ILE 58 A ASP 59 n 57 ASP 59 A GLY 60 n 58 GLY 60 A CYS 61 n 59 CYS 61 A ASN 62 n 60 ASN 62 A PRO 63 n 61 PRO 63 A VAL 64 n 62 VAL 64 A THR 65 n 63 THR 65 A LYS 66 n 64 LYS 66 A THR 67 n 65 THR 67 A TYR 68 n 66 TYR 68 A SER 69 n 67 SER 69 A TYR 70 n 68 TYR 70 A THR 71 n 69 THR 71 A CYS 72 n 70 CYS 72 A THR 73 n 71 THR 73 A GLU 74 n 72 GLU 74 A PRO 75 n 73 PRO 75 A THR 76 n 74 THR 76 A ILE 77 n 75 ILE 77 A THR 78 n 76 THR 78 A CYS 79 n 77 CYS 79 A ASN 80 n 78 ASN 80 A ASP 81 n 79 ASP 81 A SER 82 n 80 SER 82 A LYS 83 n 81 LYS 83 A ASP 84 n 82 ASP 84 A LYS 85 n 83 LYS 85 A CYS 86 n 84 CYS 86 A ALA 87 n 85 ALA 87 A ARG 88 n 86 ARG 88 A PHE 89 n 87 PHE 89 A VAL 90 n 88 VAL 90 A CYS 91 n 89 CYS 91 A ASP 92 n 90 ASP 92 A CYS 93 n 91 CYS 93 A ASP 94 n 92 ASP 94 A ARG 95 n 93 ARG 95 A THR 96 n 94 THR 96 A ALA 97 n 95 ALA 97 A ALA 98 n 96 ALA 98 A ILE 99 n 97 ILE 99 A CYS 100 n 98 CYS 100 A PHE 101 n 99 PHE 101 A ALA 102 n 100 ALA 102 A LYS 103 n 101 LYS 103 A ALA 104 n 102 ALA 104 A PRO 105 n 103 PRO 105 A TYR 106 n 104 TYR 106 A ASN 107 n 105 ASN 107 A THR 108 n 106 THR 108 A SER 109 n 107 SER 109 A ASN 110 n 108 ASN 110 A VAL 111 n 109 VAL 111 A MET 112 n 110 MET 112 A ILE 113 n 111 ILE 113 A ARG 114 n 112 ARG 114 A SER 115 n 113 SER 115 A THR 116 n 114 THR 116 A ASN 117 n 115 ASN 117 A SER 118 n 116 SER 118 A CYS 119 n 117 CYS 119 A GLN 120 n 118 GLN 120 A author_defined_assembly 1 monomeric A ASP 49 A OD2 ASP 47 1_555 A NA 121 B NA NA 1_555 A TYR 28 A O TYR 26 1_555 128.0 A ASP 49 A OD2 ASP 47 1_555 A NA 121 B NA NA 1_555 A GLY 30 A O GLY 28 1_555 142.3 A TYR 28 A O TYR 26 1_555 A NA 121 B NA NA 1_555 A GLY 30 A O GLY 28 1_555 74.0 A ASP 49 A OD2 ASP 47 1_555 A NA 121 B NA NA 1_555 A GLY 32 A O GLY 30 1_555 118.1 A TYR 28 A O TYR 26 1_555 A NA 121 B NA NA 1_555 A GLY 32 A O GLY 30 1_555 92.1 A GLY 30 A O GLY 28 1_555 A NA 121 B NA NA 1_555 A GLY 32 A O GLY 30 1_555 86.7 A ASP 49 A OD2 ASP 47 1_555 A NA 121 B NA NA 1_555 A ASP 49 A OD1 ASP 47 1_555 48.5 A TYR 28 A O TYR 26 1_555 A NA 121 B NA NA 1_555 A ASP 49 A OD1 ASP 47 1_555 92.8 A GLY 30 A O GLY 28 1_555 A NA 121 B NA NA 1_555 A ASP 49 A OD1 ASP 47 1_555 108.6 A GLY 32 A O GLY 30 1_555 A NA 121 B NA NA 1_555 A ASP 49 A OD1 ASP 47 1_555 164.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 73 A N THR 71 A O THR 76 A O THR 74 1 A PRO 20 -48.14 -18.10 1 A ASP 39 -134.50 -155.94 1 A GLU 74 -29.83 114.69 1 A SER 82 -127.16 -53.19 1 A MET 112 -150.72 50.25 1 A SER 115 57.22 -3.18 1 A ASN 117 109.87 -16.00 1 A CYS 119 -102.79 69.81 35.0 1.89 0.00 0.00 1.89 0.00 -3.78 0.23878 0.023 0.20685 0.20685 2.71 19.26 180 3380 5.3 93.9 RANDOM 1786405.83 0.000000 1 RESTRAINED THROUGHOUT 0.0 FLAT MODEL 54.0772 0.330994 0.47 0.32 5.00 0.73 0.44 2.71 19.26 61 983 10 0 912 0.009 1.4 24.4 0.92 1.17 1.50 1.98 2.00 1.60 2.00 2.49 2.50 0.283 0.063 0.27 2.80 32 473 473 6 6.3 90.2 38.8 2.70 20.00 1PO8 3380 3380 -3 -3 0.17 0.17 1 5.0 2.34 90.1 0.403 2.70 2.8 1.2 568 0.403 2.34 90.3 refinement CNS 1.1 data reduction DENZO data scaling SCALEPACK phasing AMoRE Phospholipase A2 (E.C.3.1.1.4) Crystal structure of a complex formed between krait venom phospholipase A2 and heptanoic acid at 2.7 A resolution. 1 N N 2 N N 3 N N 4 N N A ASN 1 A ASN 1 HELX_P A ASN 13 A ASN 13 1 1 13 A TRP 19 A TRP 17 HELX_P A ASN 24 A ASN 22 1 2 6 A ASP 39 A ASP 37 HELX_P A LYS 56 A LYS 54 1 3 18 A ASP 84 A ASP 82 HELX_P A ALA 104 A ALA 102 1 4 21 disulf 2.034 A CYS 11 A SG CYS 11 1_555 A CYS 72 A SG CYS 70 1_555 disulf 2.022 A CYS 27 A SG CYS 25 1_555 A CYS 119 A SG CYS 117 1_555 disulf 2.029 A CYS 29 A SG CYS 27 1_555 A CYS 45 A SG CYS 43 1_555 disulf 2.021 A CYS 44 A SG CYS 42 1_555 A CYS 100 A SG CYS 98 1_555 disulf 2.023 A CYS 51 A SG CYS 49 1_555 A CYS 93 A SG CYS 91 1_555 disulf 2.035 A CYS 61 A SG CYS 59 1_555 A CYS 86 A SG CYS 84 1_555 disulf 2.037 A CYS 79 A SG CYS 77 1_555 A CYS 91 A SG CYS 89 1_555 metalc 2.543 A NA 121 B NA NA 1_555 A ASP 49 A OD2 ASP 47 1_555 metalc 2.664 A TYR 28 A O TYR 26 1_555 A NA 121 B NA NA 1_555 metalc 2.698 A GLY 30 A O GLY 28 1_555 A NA 121 B NA NA 1_555 metalc 2.631 A GLY 32 A O GLY 30 1_555 A NA 121 B NA NA 1_555 metalc 2.789 A ASP 49 A OD1 ASP 47 1_555 A NA 121 B NA NA 1_555 HYDROLASE Phospholipase A2, inhibitor, complex, HYDROLASE A GLU 74 A GLU 72 1 A PRO 75 A PRO 73 0.94 PA2K_BUNCE UNP 1 20 Q9DF52 NLYQLMNMIQCANTRTWPSYTNYGCYCGKGGSGTPVDDLDRCCYTHDHCYNDAKNIDGCNPVTKTYSYTCTEPTITCNDS KDKCARFVCDCDRTAAICFAKAPYNTSNVMIRSTNSCQ 20 137 1PO8 1 120 Q9DF52 A 1 1 118 2 anti-parallel A TYR 70 A TYR 68 A THR 73 A THR 71 A THR 76 A THR 74 A CYS 79 A CYS 77 BINDING SITE FOR RESIDUE NA A 121 Software 5 BINDING SITE FOR RESIDUE SHV A 122 Software 7 A TYR 28 A TYR 26 5 1_555 A GLY 30 A GLY 28 5 1_555 A GLY 32 A GLY 30 5 1_555 A GLY 33 A GLY 31 5 1_555 A ASP 49 A ASP 47 5 1_555 A CYS 29 A CYS 27 7 1_555 A GLY 30 A GLY 28 7 1_555 A LYS 31 A LYS 29 7 1_555 A ASP 40 A ASP 38 7 4_454 A ARG 43 A ARG 41 7 4_454 A CYS 45 A CYS 43 7 1_555 A HIS 48 A HIS 46 7 1_555 92 P 41 21 2