1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bayro, M.J.
Swapna, G.V.T.
Huang, J.Y.
Ma, L.-C.
Mukhopadhyay, J.
Ebright, R.H.
Montelione, G.T.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
125
12382
12383
10.1021/ja036677e
14531661
Structure of Antibacterial Peptide Microcin J25: A 21-Residue Lariat Protoknot.
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
2126.348
microcin J25
1
man
polymer
no
no
GGAGHVPEYFVGIGTPISFYG
GGAGHVPEYFVGIGTPISFYG
A
ER142
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
MCJA
562
Escherichia coli
562
Escherichia coli
DH5alpha
PLASMID
pTUC202
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
repository
Initial release
Version format compliance
Version format compliance
Non-polymer description
Structure summary
Other
1
0
2003-10-28
1
1
2008-04-29
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
Y
RCSB
Y
RCSB
2003-06-16
REL
REL
Inhibitor
Microcin J25
Polypeptide
The structure was determined using triple-resonance NMR spectroscopy.
structures with the lowest energy
60
10
3D_15N-separated_NOESY
3D_13C-separated_NOESY
HNHA
HNCACB
CBCAcoNH
NA
ambient
298
K
The ensemble of structures is based on a total of 198 conformationally restraining constraints, 179 are NOE-derived distance constraints, 13 are dihedral angle constraints, 6 are distance constraints from hydrogen bonds.
simulated annealing
1
lowest energy
2mM Microcin J25 U-13C,15N; 99.5% CD3OH, 0.5% H2O
99.5% CD3OH, 0.5% H2O
Bayro, M.J.; Monleon, D.; Baran, M.C.; Sahota, G.; Paranji, R.; Moseley, H.N.B.; Aramini, J.M.; Swapna, G.V.T.; Montelione, G.T.
processing
AutoProc
0.8
Delaglio, F.; Grzesiek, S.; Vuister, G.; Zhu, G.; Pfeifer, J.; Bax, A.
processing
NMRPipe
1.4
Huang, Y.J., Tejero, R., Montelione, G.T.
structure solution
AutoStructure
1.1.2
Guntert, P.; Mumenthaler, C.; Wuthrich, K.
structure solution
DYANA
1.5
Tejero, R.; Montelione, G.T.
refinement
PDBStat
3.25
500
Varian
INOVA
600
Varian
INOVA
GLY
1
n
1
GLY
1
A
GLY
2
n
2
GLY
2
A
ALA
3
n
3
ALA
3
A
GLY
4
n
4
GLY
4
A
HIS
5
n
5
HIS
5
A
VAL
6
n
6
VAL
6
A
PRO
7
n
7
PRO
7
A
GLU
8
n
8
GLU
8
A
TYR
9
n
9
TYR
9
A
PHE
10
n
10
PHE
10
A
VAL
11
n
11
VAL
11
A
GLY
12
n
12
GLY
12
A
ILE
13
n
13
ILE
13
A
GLY
14
n
14
GLY
14
A
THR
15
n
15
THR
15
A
PRO
16
n
16
PRO
16
A
ILE
17
n
17
ILE
17
A
SER
18
n
18
SER
18
A
PHE
19
n
19
PHE
19
A
TYR
20
n
20
TYR
20
A
GLY
21
n
21
GLY
21
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
6
A
N
VAL
6
A
O
TYR
20
A
O
TYR
20
10
A
A
H
O
HIS
TYR
5
20
1.52
1
A
ALA
3
-152.15
35.07
1
A
GLU
8
-94.31
33.56
1
A
ILE
13
-56.05
-157.84
2
A
HIS
5
-130.79
-47.49
2
A
GLU
8
-89.58
32.10
2
A
ILE
13
-64.20
-146.80
2
A
ILE
17
-93.97
57.25
3
A
ALA
3
44.31
82.87
3
A
HIS
5
-127.48
-52.08
3
A
TYR
9
-18.04
89.38
3
A
ILE
17
-107.23
52.40
4
A
GLU
8
-86.87
39.29
4
A
ILE
13
35.67
-152.55
4
A
THR
15
-101.84
-64.70
4
A
ILE
17
-119.35
57.01
5
A
ALA
3
55.68
105.20
5
A
HIS
5
-124.03
-50.83
5
A
GLU
8
-90.28
33.06
5
A
VAL
11
-126.17
-166.91
5
A
ILE
13
54.88
12.72
6
A
ALA
3
-68.91
84.19
6
A
TYR
9
-60.67
72.69
7
A
ALA
3
-119.87
62.15
7
A
ILE
13
-49.64
161.44
7
A
ILE
17
-95.58
58.08
7
A
SER
18
-162.83
-164.45
8
A
TYR
9
3.76
84.94
8
A
VAL
11
-48.44
167.88
8
A
ILE
13
-139.56
-145.37
9
A
HIS
5
-141.05
-51.86
9
A
TYR
9
-48.64
92.39
9
A
PHE
10
-152.23
19.17
9
A
ILE
13
-60.81
-141.21
10
A
ALA
3
58.34
-85.83
10
A
HIS
5
-137.88
-49.63
10
A
ILE
13
-133.92
-152.05
10
A
THR
15
-90.10
-61.80
10
A
TYR
20
-117.99
-169.74
microcin J25
Structure of Antibacterial Peptide Microcin J25: a 21-Residue Lariat Protoknot
1
N
N
covale
backbone-sidechain amide linkage
1.322
A
GLY
1
A
N
GLY
1
1_555
A
GLU
8
A
CD
GLU
8
1_555
ANTIBIOTIC
LARIAT, PROTOKNOT, BACKBONE-SIDECHAIN AMIDE LINKAGE, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, ANTIBIOTIC
MCJA_ECOLI
UNP
1
38
Q9X2V7
GGAGHVPEYFVGIGTPISFYG
38
58
1PP5
1
21
Q9X2V7
A
1
1
21
2
anti-parallel
A
VAL
6
A
VAL
6
A
PRO
7
A
PRO
7
A
PHE
19
A
PHE
19
A
TYR
20
A
TYR
20