0.012294
0.000000
0.000000
0.000000
0.024137
0.000000
0.000000
0.000000
0.017126
0.00000
0.00000
0.00000
Schumacher, M.A.
Lau, A.O.T.
Johnson, P.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
81.340
41.430
58.390
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
N
Y
273
N
C
Y
274
N
C
Y
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
S
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
N
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
S
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
N
424
N
O
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
R
C
N
438
N
O
N
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
N
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
N
N
478
S
C
N
479
N
C
N
480
N
O
N
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
Y
487
N
C
N
488
N
O
N
489
N
O
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
N
506
N
C
N
507
N
C
N
508
N
O
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
Y
453
N
doub
Y
454
N
sing
Y
455
N
sing
N
456
N
sing
Y
457
N
doub
Y
458
N
sing
Y
459
N
sing
N
460
N
sing
Y
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
doub
N
465
N
sing
Y
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
doub
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
Y
481
N
doub
Y
482
N
sing
Y
483
N
sing
N
484
N
sing
Y
485
N
doub
N
486
N
sing
Y
487
N
doub
N
488
N
sing
Y
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
doub
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
115
413
424
10.1016/S0092-8674(03)00887-0
14622596
Structural Basis of Core Promoter Recognition in a Primitive Eukaryote
2003
10.2210/pdb1pp7/pdb
pdb_00001pp7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
mirrors
CCD
2003-02-12
ADSC QUANTUM 4
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.06
1.0
BL11-1
SSRL
1.06
SYNCHROTRON
SSRL BEAMLINE BL11-1
DNA site
3932.570
FERREDOXIN INR
1
syn
polymer
4008.650
FERREDOXIN INR
1
syn
polymer
15206.243
39 kDa initiator binding protein
residues 1-126
1
man
polymer
65.409
ZINC ION
7
syn
non-polymer
18.015
water
65
nat
water
no
no
(DG)(DG)(DT)(DT)(DA)(DC)(DT)(DT)(DC)(DA)(DC)(DT)(DT)
GGTTACTTCACTT
E
polydeoxyribonucleotide
no
no
(DC)(DA)(DA)(DG)(DT)(DG)(DA)(DA)(DG)(DT)(DA)(DA)(DC)
CAAGTGAAGTAAC
F
polydeoxyribonucleotide
no
no
MDSNDLEASFTSRLPPEIVAALKRKSSRDPNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTEFKMKKKNVALVMGIKL
NTLNVNLRDLAFEQLQHDKGGWTQWKRSGFTRNSVFEDPTQNDSPMHHHHH
MDSNDLEASFTSRLPPEIVAALKRKSSRDPNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTEFKMKKKNVALVMGIKL
NTLNVNLRDLAFEQLQHDKGGWTQWKRSGFTRNSVFEDPTQNDSPMHHHHH
U
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Trichomonas
Escherichia
Escherichia coli
sample
Trichomonas vaginalis:IBP39
5722
Trichomonas vaginalis
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pQE60
1
2.10
41.38
VAPOR DIFFUSION, HANGING DROP
6.0
PEG 8000, MES pH 6.0, 0.1 M Zinc acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
PEG 8000
1
MES
1
Zinc acetate
1
H2O
1
PEG 8000
2
Zinc acetate
2
-8.619
1
19
E
26
F
15
-2.973
E_DG26:DC15_F
1
-7.702
-0.281
-0.344
-0.315
-10.312
1
20
E
27
F
14
6.099
E_DT27:DA14_F
2
-16.725
-0.350
0.114
0.088
-16.584
1
20
E
28
F
13
0.748
E_DT28:DA13_F
3
-10.032
-0.112
-0.035
-0.356
3.281
1
20
E
29
F
12
-0.111
E_DA29:DT12_F
4
-8.116
0.280
-0.148
0.064
1.749
1
19
E
30
F
11
-1.603
E_DC30:DG11_F
5
-10.207
0.145
0.000
-0.241
4.997
1
20
E
31
F
10
-2.973
E_DT31:DA10_F
6
-15.985
-0.118
0.040
-0.216
3.330
1
20
E
32
F
9
0.527
E_DT32:DA9_F
7
-15.920
-0.186
-0.309
0.057
-0.667
1
19
E
33
F
8
3.180
E_DC33:DG8_F
8
-10.677
-0.091
-0.296
-0.168
14.487
1
20
E
34
F
7
2.135
E_DA34:DT7_F
9
-14.429
0.400
0.016
-0.050
2.703
1
19
E
35
F
6
-1.070
E_DC35:DG6_F
10
-10.817
0.156
0.177
-0.146
9.145
1
20
E
36
F
5
1.221
E_DT36:DA5_F
11
-10.854
0.259
-0.262
-0.076
11.164
1
20
E
37
F
4
8.532
E_DT37:DA4_F
12
-21.265
0.036
-0.495
-0.130
3.278
36.302
E
E
26
27
-0.345
F
F
15
14
3.267
-0.215
-0.296
-0.582
EE_DG26DT27:DA14DC15_FF
1
-1.260
2.022
36.281
-0.905
0.299
3.457
40.399
E
E
27
28
2.433
F
F
14
13
3.412
1.678
0.297
0.903
EE_DT27DT28:DA13DA14_FF
2
3.097
-4.491
40.252
1.110
-0.064
3.112
30.770
E
E
28
29
9.242
F
F
13
12
2.989
4.883
0.162
1.075
EE_DT28DA29:DT12DA13_FF
3
-1.115
2.111
30.369
1.129
-0.511
3.102
27.758
E
E
29
30
10.334
F
F
12
11
3.347
4.930
0.987
-0.799
EE_DA29DC30:DG11DT12_FF
4
-1.432
3.002
27.288
-2.847
-2.400
3.217
33.852
E
E
30
31
2.124
F
F
11
10
3.254
1.236
-0.379
-1.292
EE_DC30DT31:DA10DG11_FF
5
-1.187
2.040
33.810
-2.417
0.462
3.054
30.022
E
E
31
32
10.367
F
F
10
9
3.248
5.340
-0.073
-0.769
EE_DT31DT32:DA9DA10_FF
6
1.855
-3.601
29.498
-2.552
0.511
3.340
33.671
E
E
32
33
10.217
F
F
9
8
3.349
5.890
-0.091
0.240
EE_DT32DC33:DG8DA9_FF
7
0.314
-0.545
33.165
-0.575
0.210
3.315
36.870
E
E
33
34
8.956
F
F
8
7
3.135
5.644
-0.012
1.448
EE_DC33DA34:DT7DG8_FF
8
0.364
-0.577
36.449
1.531
0.068
3.458
32.044
E
E
34
35
3.502
F
F
7
6
3.557
1.931
0.656
-0.711
EE_DA34DC35:DG6DT7_FF
9
-2.208
4.005
31.913
-1.661
-1.616
3.083
39.773
E
E
35
36
3.123
F
F
6
5
3.126
2.111
0.233
-0.513
EE_DC35DT36:DA5DG6_FF
10
7.875
-11.651
38.962
-0.989
0.534
3.065
30.105
E
E
36
37
7.529
F
F
5
4
3.105
3.889
0.092
0.000
EE_DT36DT37:DA4DA5_FF
11
4.055
-7.850
29.588
-0.756
0.611
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-11-18
1
1
2008-04-29
1
2
2011-07-13
1
3
2024-02-14
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
crystal structure of the T. vaginalis IBP39 Initiator binding domain (IBD)
bound to the alpha-SCS Inr element
RCSB
Y
RCSB
2003-06-16
REL
REL
ZN
ZINC ION
HOH
water
1PP8
one of the IBD-alphaSCS complexes that is being deposited simultaneous with this deposition
PDB
experimental model
ZN
74
4
ZN
ZN
74
E
ZN
72
4
ZN
ZN
72
F
ZN
73
4
ZN
ZN
73
F
ZN
76
4
ZN
ZN
76
F
ZN
77
4
ZN
ZN
77
F
ZN
71
4
ZN
ZN
132
U
ZN
75
4
ZN
ZN
133
U
HOH
1
5
HOH
HOH
75
E
HOH
15
5
HOH
HOH
76
E
HOH
17
5
HOH
HOH
77
E
HOH
19
5
HOH
HOH
78
E
HOH
20
5
HOH
HOH
79
E
HOH
22
5
HOH
HOH
80
E
HOH
35
5
HOH
HOH
81
E
HOH
40
5
HOH
HOH
82
E
HOH
51
5
HOH
HOH
83
E
HOH
52
5
HOH
HOH
84
E
HOH
64
5
HOH
HOH
85
E
HOH
7
5
HOH
HOH
78
F
HOH
8
5
HOH
HOH
79
F
HOH
18
5
HOH
HOH
80
F
HOH
30
5
HOH
HOH
81
F
HOH
43
5
HOH
HOH
82
F
HOH
49
5
HOH
HOH
83
F
HOH
56
5
HOH
HOH
84
F
HOH
59
5
HOH
HOH
85
F
HOH
62
5
HOH
HOH
86
F
HOH
63
5
HOH
HOH
87
F
HOH
2
5
HOH
HOH
134
U
HOH
3
5
HOH
HOH
135
U
HOH
4
5
HOH
HOH
136
U
HOH
5
5
HOH
HOH
137
U
HOH
6
5
HOH
HOH
138
U
HOH
9
5
HOH
HOH
139
U
HOH
10
5
HOH
HOH
140
U
HOH
11
5
HOH
HOH
141
U
HOH
12
5
HOH
HOH
142
U
HOH
13
5
HOH
HOH
143
U
HOH
14
5
HOH
HOH
144
U
HOH
16
5
HOH
HOH
145
U
HOH
21
5
HOH
HOH
146
U
HOH
23
5
HOH
HOH
147
U
HOH
24
5
HOH
HOH
148
U
HOH
25
5
HOH
HOH
149
U
HOH
26
5
HOH
HOH
150
U
HOH
27
5
HOH
HOH
151
U
HOH
28
5
HOH
HOH
152
U
HOH
29
5
HOH
HOH
153
U
HOH
31
5
HOH
HOH
154
U
HOH
32
5
HOH
HOH
155
U
HOH
33
5
HOH
HOH
156
U
HOH
34
5
HOH
HOH
157
U
HOH
36
5
HOH
HOH
158
U
HOH
37
5
HOH
HOH
159
U
HOH
38
5
HOH
HOH
160
U
HOH
39
5
HOH
HOH
161
U
HOH
41
5
HOH
HOH
162
U
HOH
42
5
HOH
HOH
163
U
HOH
44
5
HOH
HOH
164
U
HOH
45
5
HOH
HOH
165
U
HOH
46
5
HOH
HOH
166
U
HOH
47
5
HOH
HOH
167
U
HOH
48
5
HOH
HOH
168
U
HOH
50
5
HOH
HOH
169
U
HOH
53
5
HOH
HOH
170
U
HOH
54
5
HOH
HOH
171
U
HOH
55
5
HOH
HOH
172
U
HOH
57
5
HOH
HOH
173
U
HOH
60
5
HOH
HOH
174
U
HOH
61
5
HOH
HOH
175
U
HOH
65
5
HOH
HOH
176
U
HOH
66
5
HOH
HOH
177
U
n
1
25
E
G
26
n
2
DG
26
E
T
27
n
3
DT
27
E
T
28
n
4
DT
28
E
A
29
n
5
DA
29
E
C
30
n
6
DC
30
E
T
31
n
7
DT
31
E
T
32
n
8
DT
32
E
C
33
n
9
DC
33
E
A
34
n
10
DA
34
E
C
35
n
11
DC
35
E
T
36
n
12
DT
36
E
T
37
n
13
DT
37
E
C
3
n
1
DC
3
F
A
4
n
2
DA
4
F
A
5
n
3
DA
5
F
G
6
n
4
DG
6
F
T
7
n
5
DT
7
F
G
8
n
6
DG
8
F
A
9
n
7
DA
9
F
A
10
n
8
DA
10
F
G
11
n
9
DG
11
F
T
12
n
10
DT
12
F
A
13
n
11
DA
13
F
A
14
n
12
DA
14
F
C
15
n
13
DC
15
F
n
1
1
U
n
2
2
U
n
3
3
U
n
4
4
U
ASP
5
n
5
ASP
5
U
LEU
6
n
6
LEU
6
U
GLU
7
n
7
GLU
7
U
ALA
8
n
8
ALA
8
U
SER
9
n
9
SER
9
U
PHE
10
n
10
PHE
10
U
THR
11
n
11
THR
11
U
SER
12
n
12
SER
12
U
ARG
13
n
13
ARG
13
U
LEU
14
n
14
LEU
14
U
PRO
15
n
15
PRO
15
U
PRO
16
n
16
PRO
16
U
GLU
17
n
17
GLU
17
U
ILE
18
n
18
ILE
18
U
VAL
19
n
19
VAL
19
U
ALA
20
n
20
ALA
20
U
ALA
21
n
21
ALA
21
U
LEU
22
n
22
LEU
22
U
LYS
23
n
23
LYS
23
U
ARG
24
n
24
ARG
24
U
LYS
25
n
25
LYS
25
U
SER
26
n
26
SER
26
U
SER
27
n
27
SER
27
U
ARG
28
n
28
ARG
28
U
ASP
29
n
29
ASP
29
U
PRO
30
n
30
PRO
30
U
ASN
31
n
31
ASN
31
U
SER
32
n
32
SER
32
U
ARG
33
n
33
ARG
33
U
PHE
34
n
34
PHE
34
U
PRO
35
n
35
PRO
35
U
ARG
36
n
36
ARG
36
U
LYS
37
n
37
LYS
37
U
LEU
38
n
38
LEU
38
U
HIS
39
n
39
HIS
39
U
MET
40
n
40
MET
40
U
LEU
41
n
41
LEU
41
U
LEU
42
n
42
LEU
42
U
THR
43
n
43
THR
43
U
TYR
44
n
44
TYR
44
U
LEU
45
n
45
LEU
45
U
ALA
46
n
46
ALA
46
U
SER
47
n
47
SER
47
U
ASN
48
n
48
ASN
48
U
PRO
49
n
49
PRO
49
U
GLN
50
n
50
GLN
50
U
LEU
51
n
51
LEU
51
U
GLU
52
n
52
GLU
52
U
GLU
53
n
53
GLU
53
U
GLU
54
n
54
GLU
54
U
ILE
55
n
55
ILE
55
U
GLY
56
n
56
GLY
56
U
LEU
57
n
57
LEU
57
U
SER
58
n
58
SER
58
U
TRP
59
n
59
TRP
59
U
ILE
60
n
60
ILE
60
U
SER
61
n
61
SER
61
U
ASP
62
n
62
ASP
62
U
THR
63
n
63
THR
63
U
GLU
64
n
64
GLU
64
U
PHE
65
n
65
PHE
65
U
LYS
66
n
66
LYS
66
U
MET
67
n
67
MET
67
U
LYS
68
n
68
LYS
68
U
LYS
69
n
69
LYS
69
U
LYS
70
n
70
LYS
70
U
ASN
71
n
71
ASN
71
U
VAL
72
n
72
VAL
72
U
ALA
73
n
73
ALA
73
U
LEU
74
n
74
LEU
74
U
VAL
75
n
75
VAL
75
U
MET
76
n
76
MET
76
U
GLY
77
n
77
GLY
77
U
ILE
78
n
78
ILE
78
U
LYS
79
n
79
LYS
79
U
LEU
80
n
80
LEU
80
U
ASN
81
n
81
ASN
81
U
THR
82
n
82
THR
82
U
LEU
83
n
83
LEU
83
U
ASN
84
n
84
ASN
84
U
VAL
85
n
85
VAL
85
U
ASN
86
n
86
ASN
86
U
LEU
87
n
87
LEU
87
U
ARG
88
n
88
ARG
88
U
ASP
89
n
89
ASP
89
U
LEU
90
n
90
LEU
90
U
ALA
91
n
91
ALA
91
U
PHE
92
n
92
PHE
92
U
GLU
93
n
93
GLU
93
U
GLN
94
n
94
GLN
94
U
LEU
95
n
95
LEU
95
U
GLN
96
n
96
GLN
96
U
HIS
97
n
97
HIS
97
U
ASP
98
n
98
ASP
98
U
LYS
99
n
99
LYS
99
U
GLY
100
n
100
GLY
100
U
GLY
101
n
101
GLY
101
U
TRP
102
n
102
TRP
102
U
THR
103
n
103
THR
103
U
GLN
104
n
104
GLN
104
U
TRP
105
n
105
TRP
105
U
LYS
106
n
106
LYS
106
U
ARG
107
n
107
ARG
107
U
SER
108
n
108
SER
108
U
GLY
109
n
109
GLY
109
U
PHE
110
n
110
PHE
110
U
THR
111
n
111
THR
111
U
ARG
112
n
112
ARG
112
U
ASN
113
n
113
ASN
113
U
SER
114
n
114
SER
114
U
VAL
115
n
115
VAL
115
U
PHE
116
n
116
PHE
116
U
GLU
117
n
117
GLU
117
U
ASP
118
n
118
ASP
118
U
n
119
119
U
n
120
120
U
n
121
121
U
n
122
122
U
n
123
123
U
n
124
124
U
n
125
125
U
n
126
126
U
n
127
127
U
n
128
128
U
n
129
129
U
n
130
130
U
n
131
131
U
author_defined_assembly
3
trimeric
U
HIS
39
C
ND1
HIS
39
1_555
U
ZN
132
I
ZN
ZN
1_555
U
GLU
93
C
OE2
GLU
93
3_556
89.3
U
HIS
39
C
ND1
HIS
39
1_555
U
ZN
132
I
ZN
ZN
1_555
U
HOH
143
M
O
HOH
3_556
115.4
U
GLU
93
C
OE2
GLU
93
3_556
U
ZN
132
I
ZN
ZN
1_555
U
HOH
143
M
O
HOH
3_556
103.7
U
HIS
39
C
ND1
HIS
39
1_555
U
ZN
132
I
ZN
ZN
1_555
U
HOH
144
M
O
HOH
1_555
113.1
U
GLU
93
C
OE2
GLU
93
3_556
U
ZN
132
I
ZN
ZN
1_555
U
HOH
144
M
O
HOH
1_555
125.3
U
HOH
143
M
O
HOH
3_556
U
ZN
132
I
ZN
ZN
1_555
U
HOH
144
M
O
HOH
1_555
109.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
U
N
SER
58
C
N
SER
58
U
O
LYS
66
C
O
LYS
66
U
N
PHE
65
C
N
PHE
65
U
O
TRP
105
C
O
TRP
105
U
O
LYS
106
C
O
LYS
106
U
N
GLU
93
C
N
GLU
93
U
N
THR
111
C
N
THR
111
U
O
SER
114
C
O
SER
114
1
F
HOH
84
L
HOH
1
E
P
DG
26
A
P
DG
2
1
Y
1
E
OP1
DG
26
A
OP1
DG
2
1
Y
1
E
OP2
DG
26
A
OP2
DG
2
1
Y
1
E
DG
25
A
DG
1
1
Y
1
U
MET
1
C
MET
1
1
Y
1
U
ASP
2
C
ASP
2
1
Y
1
U
SER
3
C
SER
3
1
Y
1
U
ASN
4
C
ASN
4
1
Y
1
U
PRO
119
C
PRO
119
1
Y
1
U
THR
120
C
THR
120
1
Y
1
U
GLN
121
C
GLN
121
1
Y
1
U
ASN
122
C
ASN
122
1
Y
1
U
ASP
123
C
ASP
123
1
Y
1
U
SER
124
C
SER
124
1
Y
1
U
PRO
125
C
PRO
125
1
Y
1
U
MET
126
C
MET
126
1
Y
1
U
HIS
127
C
HIS
127
1
Y
1
U
HIS
128
C
HIS
128
1
Y
1
U
HIS
129
C
HIS
129
1
Y
1
U
HIS
130
C
HIS
130
1
Y
1
U
HIS
131
C
HIS
131
1
Y
1
F
DA
4
0.090
SIDE CHAIN
1
F
DA
9
0.061
SIDE CHAIN
1
F
DA
10
0.098
SIDE CHAIN
1
-7.40
0.80
109.40
102.00
F
F
F
O5'
C5'
C4'
DC
DC
DC
3
3
3
N
1
-11.59
1.90
111.40
99.81
U
U
U
CB
CA
C
VAL
VAL
VAL
115
115
115
N
1
U
SER
27
-123.02
-150.79
1
U
LEU
57
-166.32
99.75
1
U
GLU
117
48.98
-131.14
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
44.2
-6.70
0.00
0.00
-12.10
0.00
18.80
0.246
0.014
0.197
0.197
2.45
47.43
328
18917
7145
4.6
92.9
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
one of the IBD-alphaSCS complexes
that is being deposited simultaneous
with this deposition
Engh & Huber
FLAT MODEL
37.385
0.329312
0.37
0.28
5.00
0.47
0.40
2.45
47.43
65
1505
7
505
928
0.017
1.9
21.8
1.64
2.84
1.50
4.28
2.00
4.52
2.00
6.41
2.50
0.362
0.045
0.305
2.60
65
1118
6
5.5
95.3
43.1
2.45
47.43
1PP7
18917
7158
0.0
0.0
0.089
1
5.7
2.6
94.5
2.45
2.51
526
0.438
2.7
98.4
refinement
CNS
1.0
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
MOLREP
Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin Inr
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
there is one IBD-FD Inr complex in the crystallographic asymmetric unit- the IBD binds DNA as a monomer
U
ASP
5
C
ASP
5
HELX_P
U
SER
12
C
SER
12
1
1
8
U
PRO
15
C
PRO
15
HELX_P
U
ARG
24
C
ARG
24
1
2
10
U
ARG
33
C
ARG
33
HELX_P
U
ALA
46
C
ALA
46
1
3
14
U
ASN
48
C
ASN
48
HELX_P
U
GLY
56
C
GLY
56
1
4
9
U
LYS
68
C
LYS
68
HELX_P
U
GLY
77
C
GLY
77
1
5
10
U
LYS
79
C
LYS
79
HELX_P
U
LEU
90
C
LEU
90
1
6
12
metalc
2.160
E
DG
26
A
N7
DG
2
1_555
E
ZN
74
D
ZN
ZN
1_555
metalc
2.087
F
DG
8
B
N7
DG
6
1_555
F
ZN
72
E
ZN
ZN
1_555
metalc
2.612
F
DA
10
B
N7
DA
8
1_555
F
ZN
77
H
ZN
ZN
1_555
metalc
2.307
F
DG
11
B
N7
DG
9
1_555
F
ZN
73
F
ZN
ZN
1_555
metalc
2.514
U
GLU
7
C
OE2
GLU
7
1_555
U
ZN
133
J
ZN
ZN
1_555
metalc
2.057
U
HIS
39
C
ND1
HIS
39
1_555
U
ZN
132
I
ZN
ZN
1_555
metalc
2.052
U
GLU
93
C
OE2
GLU
93
3_556
U
ZN
132
I
ZN
ZN
1_555
metalc
2.290
U
ZN
132
I
ZN
ZN
1_555
U
HOH
143
M
O
HOH
3_556
metalc
2.314
U
ZN
132
I
ZN
ZN
1_555
U
HOH
144
M
O
HOH
1_555
hydrog
WATSON-CRICK
E
DG
26
A
N1
DG
2
1_555
F
DC
15
B
N3
DC
13
1_555
hydrog
WATSON-CRICK
E
DG
26
A
N2
DG
2
1_555
F
DC
15
B
O2
DC
13
1_555
hydrog
WATSON-CRICK
E
DG
26
A
O6
DG
2
1_555
F
DC
15
B
N4
DC
13
1_555
hydrog
WATSON-CRICK
E
DT
27
A
N3
DT
3
1_555
F
DA
14
B
N1
DA
12
1_555
hydrog
WATSON-CRICK
E
DT
27
A
O4
DT
3
1_555
F
DA
14
B
N6
DA
12
1_555
hydrog
WATSON-CRICK
E
DT
28
A
N3
DT
4
1_555
F
DA
13
B
N1
DA
11
1_555
hydrog
WATSON-CRICK
E
DT
28
A
O4
DT
4
1_555
F
DA
13
B
N6
DA
11
1_555
hydrog
WATSON-CRICK
E
DA
29
A
N1
DA
5
1_555
F
DT
12
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
E
DA
29
A
N6
DA
5
1_555
F
DT
12
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
E
DC
30
A
N3
DC
6
1_555
F
DG
11
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
E
DC
30
A
N4
DC
6
1_555
F
DG
11
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
E
DC
30
A
O2
DC
6
1_555
F
DG
11
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
E
DT
31
A
N3
DT
7
1_555
F
DA
10
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
E
DT
31
A
O4
DT
7
1_555
F
DA
10
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
E
DT
32
A
N3
DT
8
1_555
F
DA
9
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
E
DT
32
A
O4
DT
8
1_555
F
DA
9
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
E
DC
33
A
N3
DC
9
1_555
F
DG
8
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
E
DC
33
A
N4
DC
9
1_555
F
DG
8
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
E
DC
33
A
O2
DC
9
1_555
F
DG
8
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
E
DA
34
A
N1
DA
10
1_555
F
DT
7
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
E
DA
34
A
N6
DA
10
1_555
F
DT
7
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
E
DC
35
A
N3
DC
11
1_555
F
DG
6
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
35
A
N4
DC
11
1_555
F
DG
6
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
35
A
O2
DC
11
1_555
F
DG
6
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
E
DT
36
A
N3
DT
12
1_555
F
DA
5
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
E
DT
36
A
O4
DT
12
1_555
F
DA
5
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
E
DT
37
A
N3
DT
13
1_555
F
DA
4
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
E
DT
37
A
O4
DT
13
1_555
F
DA
4
B
N6
DA
2
1_555
Transcription/DNA
Initiator, core promoter, transcription initation, IBP39, T. vaginalis, Transcription-DNA COMPLEX
Q95VR4_TRIVA
UNP
3
1
Q95VR4
MDSNDLEASFTSRLPPEIVAALKRKSSRDPNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTEFKMKKKNVALVMGIKL
NTLNVNLRDLAFEQLQHDKGGWTQWKRSGFTRNSVFEDPTQNDSPM
1PP7
PDB
1
1PP7
1PP7
PDB
2
1PP7
1
126
1PP7
1
126
Q95VR4
U
1
1
126
25
37
1PP7
25
37
1PP7
E
2
1
13
3
15
1PP7
3
15
1PP7
F
3
1
13
1
expression tag
HIS
127
1PP7
U
Q95VR4
UNP
127
1
expression tag
HIS
128
1PP7
U
Q95VR4
UNP
128
1
expression tag
HIS
129
1PP7
U
Q95VR4
UNP
129
1
expression tag
HIS
130
1PP7
U
Q95VR4
UNP
130
1
expression tag
HIS
131
1PP7
U
Q95VR4
UNP
131
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
U
LEU
57
C
LEU
57
U
TRP
59
C
TRP
59
U
PHE
65
C
PHE
65
U
MET
67
C
MET
67
U
TRP
102
C
TRP
102
U
LYS
106
C
LYS
106
U
GLU
93
C
GLU
93
U
LYS
99
C
LYS
99
U
PHE
110
C
PHE
110
U
THR
111
C
THR
111
U
SER
114
C
SER
114
U
VAL
115
C
VAL
115
BINDING SITE FOR RESIDUE ZN U 132
U
ZN
132
Software
5
BINDING SITE FOR RESIDUE ZN F 72
F
ZN
72
Software
1
BINDING SITE FOR RESIDUE ZN F 73
F
ZN
73
Software
1
BINDING SITE FOR RESIDUE ZN E 74
E
ZN
74
Software
1
BINDING SITE FOR RESIDUE ZN U 133
U
ZN
133
Software
1
BINDING SITE FOR RESIDUE ZN F 76
F
ZN
76
Software
1
BINDING SITE FOR RESIDUE ZN F 77
F
ZN
77
Software
1
U
HIS
39
C
HIS
39
5
1_555
U
GLU
93
C
GLU
93
5
3_556
U
LYS
106
C
LYS
106
5
3_556
U
HOH
143
M
HOH
5
3_556
U
HOH
144
M
HOH
5
1_555
F
DG
8
B
DG
6
1
1_555
F
DG
11
B
DG
9
1
1_555
E
DG
26
A
DG
2
1
1_555
U
GLU
7
C
GLU
7
1
1_555
F
DC
3
B
DC
1
1
1_555
F
DA
10
B
DA
8
1
1_555
18
P 21 21 2