0.013493
0.007790
0.000000
0.000000
0.015581
0.000000
0.000000
0.000000
0.012852
0.00000
0.00000
0.00000
RESIDUE 152 IS A CIS PROLINE.
Pickersgill, R.W.
Rizkallah, P.J.
Harris, G.W.
Goodenough, P.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
74.110
74.110
77.810
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
Hg 2
200.590
MERCURY (II) ION
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.B
ASBSDK
0622
0108-7681
47
766
771
-1
Determination of the Structure of Papaya Protease Omega
1991
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
23325.744
PROTEASE OMEGA
3.4.22.30
1
man
polymer
200.590
MERCURY (II) ION
1
syn
non-polymer
18.015
water
133
nat
water
no
no
LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGI
HLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHA
VTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN
LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGI
HLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHA
VTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
papaya
Carica
sample
3649
Carica papaya
2.64
53.46
pdbx_database_status
struct_conf
struct_conf_type
repository
Initial release
Version format compliance
Version format compliance
Database references
Structure summary
Derived calculations
Other
1
0
1993-10-31
1
1
2008-03-03
1
2
2011-07-13
1
3
2015-11-25
1
4
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1991-07-12
REL
REL
HG
MERCURY (II) ION
HOH
water
HG
217
2
HG
HG
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
263
3
HOH
HOH
263
A
HOH
264
3
HOH
HOH
264
A
HOH
265
3
HOH
HOH
265
A
HOH
266
3
HOH
HOH
266
A
HOH
267
3
HOH
HOH
267
A
HOH
268
3
HOH
HOH
268
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
HOH
275
3
HOH
HOH
275
A
HOH
276
3
HOH
HOH
276
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
280
3
HOH
HOH
280
A
HOH
281
3
HOH
HOH
281
A
HOH
282
3
HOH
HOH
282
A
HOH
283
3
HOH
HOH
283
A
HOH
284
3
HOH
HOH
284
A
HOH
285
3
HOH
HOH
285
A
HOH
286
3
HOH
HOH
286
A
HOH
287
3
HOH
HOH
287
A
HOH
288
3
HOH
HOH
288
A
HOH
289
3
HOH
HOH
289
A
HOH
290
3
HOH
HOH
290
A
HOH
291
3
HOH
HOH
291
A
HOH
292
3
HOH
HOH
292
A
HOH
293
3
HOH
HOH
293
A
HOH
294
3
HOH
HOH
294
A
HOH
295
3
HOH
HOH
295
A
HOH
296
3
HOH
HOH
296
A
HOH
297
3
HOH
HOH
297
A
HOH
298
3
HOH
HOH
298
A
HOH
299
3
HOH
HOH
299
A
HOH
300
3
HOH
HOH
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
LEU
1
n
1
LEU
1
A
PRO
2
n
2
PRO
2
A
GLU
3
n
3
GLU
3
A
ASN
4
n
4
ASN
4
A
VAL
5
n
5
VAL
5
A
ASP
6
n
6
ASP
6
A
TRP
7
n
7
TRP
7
A
ARG
8
n
8
ARG
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
GLY
11
n
11
GLY
11
A
ALA
12
n
12
ALA
12
A
VAL
13
n
13
VAL
13
A
THR
14
n
14
THR
14
A
PRO
15
n
15
PRO
15
A
VAL
16
n
16
VAL
16
A
ARG
17
n
17
ARG
17
A
HIS
18
n
18
HIS
18
A
GLN
19
n
19
GLN
19
A
GLY
20
n
20
GLY
20
A
SER
21
n
21
SER
21
A
CYS
22
n
22
CYS
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
CYS
25
n
25
CYS
25
A
TRP
26
n
26
TRP
26
A
ALA
27
n
27
ALA
27
A
PHE
28
n
28
PHE
28
A
SER
29
n
29
SER
29
A
ALA
30
n
30
ALA
30
A
VAL
31
n
31
VAL
31
A
ALA
32
n
32
ALA
32
A
THR
33
n
33
THR
33
A
VAL
34
n
34
VAL
34
A
GLU
35
n
35
GLU
35
A
GLY
36
n
36
GLY
36
A
ILE
37
n
37
ILE
37
A
ASN
38
n
38
ASN
38
A
LYS
39
n
39
LYS
39
A
ILE
40
n
40
ILE
40
A
ARG
41
n
41
ARG
41
A
THR
42
n
42
THR
42
A
GLY
43
n
43
GLY
43
A
LYS
44
n
44
LYS
44
A
LEU
45
n
45
LEU
45
A
VAL
46
n
46
VAL
46
A
GLU
47
n
47
GLU
47
A
LEU
48
n
48
LEU
48
A
SER
49
n
49
SER
49
A
GLU
50
n
50
GLU
50
A
GLN
51
n
51
GLN
51
A
GLU
52
n
52
GLU
52
A
LEU
53
n
53
LEU
53
A
VAL
54
n
54
VAL
54
A
ASP
55
n
55
ASP
55
A
CYS
56
n
56
CYS
56
A
GLU
57
n
57
GLU
57
A
ARG
58
n
58
ARG
58
A
ARG
59
n
59
ARG
59
A
SER
60
n
60
SER
60
A
HIS
61
n
61
HIS
61
A
GLY
62
n
62
GLY
62
A
CYS
63
n
63
CYS
63
A
LYS
64
n
64
LYS
64
A
GLY
65
n
65
GLY
65
A
GLY
66
n
66
GLY
66
A
TYR
67
n
67
TYR
67
A
PRO
68
n
68
PRO
68
A
PRO
69
n
69
PRO
69
A
TYR
70
n
70
TYR
70
A
ALA
71
n
71
ALA
71
A
LEU
72
n
72
LEU
72
A
GLU
73
n
73
GLU
73
A
TYR
74
n
74
TYR
74
A
VAL
75
n
75
VAL
75
A
ALA
76
n
76
ALA
76
A
LYS
77
n
77
LYS
77
A
ASN
78
n
78
ASN
78
A
GLY
79
n
79
GLY
79
A
ILE
80
n
80
ILE
80
A
HIS
81
n
81
HIS
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
SER
84
n
84
SER
84
A
LYS
85
n
85
LYS
85
A
TYR
86
n
86
TYR
86
A
PRO
87
n
87
PRO
87
A
TYR
88
n
88
TYR
88
A
LYS
89
n
89
LYS
89
A
ALA
90
n
90
ALA
90
A
LYS
91
n
91
LYS
91
A
GLN
92
n
92
GLN
92
A
GLY
93
n
93
GLY
93
A
THR
94
n
94
THR
94
A
CYS
95
n
95
CYS
95
A
ARG
96
n
96
ARG
96
A
ALA
97
n
97
ALA
97
A
LYS
98
n
98
LYS
98
A
GLN
99
n
99
GLN
99
A
VAL
100
n
100
VAL
100
A
GLY
101
n
101
GLY
101
A
GLY
102
n
102
GLY
102
A
PRO
103
n
103
PRO
103
A
ILE
104
n
104
ILE
104
A
VAL
105
n
105
VAL
105
A
LYS
106
n
106
LYS
106
A
THR
107
n
107
THR
107
A
SER
108
n
108
SER
108
A
GLY
109
n
109
GLY
109
A
VAL
110
n
110
VAL
110
A
GLY
111
n
111
GLY
111
A
ARG
112
n
112
ARG
112
A
VAL
113
n
113
VAL
113
A
GLN
114
n
114
GLN
114
A
PRO
115
n
115
PRO
115
A
ASN
116
n
116
ASN
116
A
ASN
117
n
117
ASN
117
A
GLU
118
n
118
GLU
118
A
GLY
119
n
119
GLY
119
A
ASN
120
n
120
ASN
120
A
LEU
121
n
121
LEU
121
A
LEU
122
n
122
LEU
122
A
ASN
123
n
123
ASN
123
A
ALA
124
n
124
ALA
124
A
ILE
125
n
125
ILE
125
A
ALA
126
n
126
ALA
126
A
LYS
127
n
127
LYS
127
A
GLN
128
n
128
GLN
128
A
PRO
129
n
129
PRO
129
A
VAL
130
n
130
VAL
130
A
SER
131
n
131
SER
131
A
VAL
132
n
132
VAL
132
A
VAL
133
n
133
VAL
133
A
VAL
134
n
134
VAL
134
A
GLU
135
n
135
GLU
135
A
SER
136
n
136
SER
136
A
LYS
137
n
137
LYS
137
A
GLY
138
n
138
GLY
138
A
ARG
139
n
139
ARG
139
A
PRO
140
n
140
PRO
140
A
PHE
141
n
141
PHE
141
A
GLN
142
n
142
GLN
142
A
LEU
143
n
143
LEU
143
A
TYR
144
n
144
TYR
144
A
LYS
145
n
145
LYS
145
A
GLY
146
n
146
GLY
146
A
GLY
147
n
147
GLY
147
A
ILE
148
n
148
ILE
148
A
PHE
149
n
149
PHE
149
A
GLU
150
n
150
GLU
150
A
GLY
151
n
151
GLY
151
A
PRO
152
n
152
PRO
152
A
CYS
153
n
153
CYS
153
A
GLY
154
n
154
GLY
154
A
THR
155
n
155
THR
155
A
LYS
156
n
156
LYS
156
A
VAL
157
n
157
VAL
157
A
ASP
158
n
158
ASP
158
A
HIS
159
n
159
HIS
159
A
ALA
160
n
160
ALA
160
A
VAL
161
n
161
VAL
161
A
THR
162
n
162
THR
162
A
ALA
163
n
163
ALA
163
A
VAL
164
n
164
VAL
164
A
GLY
165
n
165
GLY
165
A
TYR
166
n
166
TYR
166
A
GLY
167
n
167
GLY
167
A
LYS
168
n
168
LYS
168
A
SER
169
n
169
SER
169
A
GLY
170
n
170
GLY
170
A
GLY
171
n
171
GLY
171
A
LYS
172
n
172
LYS
172
A
GLY
173
n
173
GLY
173
A
TYR
174
n
174
TYR
174
A
ILE
175
n
175
ILE
175
A
LEU
176
n
176
LEU
176
A
ILE
177
n
177
ILE
177
A
LYS
178
n
178
LYS
178
A
ASN
179
n
179
ASN
179
A
SER
180
n
180
SER
180
A
TRP
181
n
181
TRP
181
A
GLY
182
n
182
GLY
182
A
THR
183
n
183
THR
183
A
ALA
184
n
184
ALA
184
A
TRP
185
n
185
TRP
185
A
GLY
186
n
186
GLY
186
A
GLU
187
n
187
GLU
187
A
LYS
188
n
188
LYS
188
A
GLY
189
n
189
GLY
189
A
TYR
190
n
190
TYR
190
A
ILE
191
n
191
ILE
191
A
ARG
192
n
192
ARG
192
A
ILE
193
n
193
ILE
193
A
LYS
194
n
194
LYS
194
A
ARG
195
n
195
ARG
195
A
ALA
196
n
196
ALA
196
A
PRO
197
n
197
PRO
197
A
GLY
198
n
198
GLY
198
A
ASN
199
n
199
ASN
199
A
SER
200
n
200
SER
200
A
PRO
201
n
201
PRO
201
A
GLY
202
n
202
GLY
202
A
VAL
203
n
203
VAL
203
A
CYS
204
n
204
CYS
204
A
GLY
205
n
205
GLY
205
A
LEU
206
n
206
LEU
206
A
TYR
207
n
207
TYR
207
A
LYS
208
n
208
LYS
208
A
SER
209
n
209
SER
209
A
SER
210
n
210
SER
210
A
TYR
211
n
211
TYR
211
A
TYR
212
n
212
TYR
212
A
PRO
213
n
213
PRO
213
A
THR
214
n
214
THR
214
A
LYS
215
n
215
LYS
215
A
ASN
216
n
216
ASN
216
A
author_defined_assembly
1
monomeric
A
HOH
229
C
O
HOH
1_555
A
HG
217
B
HG
HG
1_555
A
CYS
25
A
SG
CYS
25
1_555
113.9
A
HOH
229
C
O
HOH
1_555
A
HG
217
B
HG
HG
1_555
A
HIS
159
A
ND1
HIS
159
1_555
82.2
A
CYS
25
A
SG
CYS
25
1_555
A
HG
217
B
HG
HG
1_555
A
HIS
159
A
ND1
HIS
159
1_555
103.8
A
HOH
229
C
O
HOH
1_555
A
HG
217
B
HG
HG
1_555
A
LYS
64
A
NZ
LYS
64
5_455
79.5
A
CYS
25
A
SG
CYS
25
1_555
A
HG
217
B
HG
HG
1_555
A
LYS
64
A
NZ
LYS
64
5_455
160.8
A
HIS
159
A
ND1
HIS
159
1_555
A
HG
217
B
HG
HG
1_555
A
LYS
64
A
NZ
LYS
64
5_455
91.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
5
A
N
VAL
5
A
O
TYR
166
A
O
TYR
166
A
N
SER
169
A
N
SER
169
A
O
LYS
172
A
O
LYS
172
A
N
ILE
177
A
N
ILE
177
A
O
ILE
191
A
O
ILE
191
A
O
ARG
192
A
O
ARG
192
A
N
PHE
149
A
N
PHE
149
A
N
GLY
111
A
N
GLY
111
A
O
TYR
212
A
O
TYR
212
A
N
TYR
211
A
N
TYR
211
A
O
SER
131
A
O
SER
131
A
N
VAL
132
A
N
VAL
132
A
O
VAL
161
A
O
VAL
161
1
A
CA
ARG
58
WRONG HAND
1
A
CA
ASN
216
PLANAR
1
A
A
OXT
O
ASN
HOH
216
349
2.00
1
A
A
OG
O
SER
HOH
169
291
2.19
1
A
ASN
123
-13.13
1
A
A
SER
GLY
169
170
-121.85
1
A
ARG
17
0.108
SIDE CHAIN
1
A
ARG
41
0.264
SIDE CHAIN
1
A
ARG
58
0.235
SIDE CHAIN
1
A
ARG
112
0.210
SIDE CHAIN
1
A
ARG
139
0.113
SIDE CHAIN
1
A
ARG
195
0.083
SIDE CHAIN
1
13.98
1.70
111.00
124.98
A
A
A
CB
CG
CD2
LEU
LEU
LEU
1
1
1
N
1
7.25
0.90
118.30
125.55
A
A
A
CB
CG
OD1
ASP
ASP
ASP
6
6
6
N
1
-3.08
0.50
120.30
117.22
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
8
8
8
N
1
14.70
1.60
122.70
137.40
A
A
A
O
C
N
ARG
ARG
LYS
8
8
9
Y
1
-3.88
0.50
120.30
116.42
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
41
41
41
N
1
14.55
1.90
110.20
124.75
A
A
A
CB
CA
C
LEU
LEU
LEU
45
45
45
N
1
-8.87
1.20
123.30
114.43
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
57
57
57
N
1
3.23
0.50
120.30
123.53
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
58
58
58
N
1
-4.66
0.50
120.30
115.64
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
59
59
59
N
1
-7.88
0.60
121.00
113.12
A
A
A
CB
CG
CD1
TYR
TYR
TYR
67
67
67
N
1
-5.61
0.80
121.30
115.69
A
A
A
CG
CD2
CE2
TYR
TYR
TYR
67
67
67
N
1
-10.02
1.60
122.70
112.68
A
A
A
O
C
N
PRO
PRO
TYR
69
69
70
Y
1
-4.77
0.60
121.00
116.23
A
A
A
CB
CG
CD2
TYR
TYR
TYR
74
74
74
N
1
12.66
1.70
111.00
123.66
A
A
A
CB
CG
CD1
LEU
LEU
LEU
82
82
82
N
1
-3.60
0.50
120.30
116.70
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
83
83
83
N
1
-3.91
0.60
121.00
117.09
A
A
A
CB
CG
CD2
TYR
TYR
TYR
86
86
86
N
1
-3.98
0.60
121.00
117.02
A
A
A
CB
CG
CD2
TYR
TYR
TYR
88
88
88
N
1
-7.73
0.80
121.30
113.57
A
A
A
CG
CD2
CE2
TYR
TYR
TYR
88
88
88
N
1
-14.11
2.20
113.40
99.29
A
A
A
CA
CB
CG
GLN
GLN
GLN
92
92
92
N
1
19.37
2.10
111.80
131.17
A
A
A
CG
CD
NE
ARG
ARG
ARG
96
96
96
N
1
-3.69
0.50
120.30
116.61
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
96
96
96
N
1
4.31
0.50
120.30
124.61
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
96
96
96
N
1
14.39
1.50
110.90
125.29
A
A
A
CA
CB
CG2
VAL
VAL
VAL
100
100
100
N
1
-19.74
2.50
113.10
93.36
A
A
A
N
CA
C
GLY
GLY
GLY
102
102
102
N
1
17.19
1.50
119.30
136.49
A
A
A
C
N
CA
GLY
PRO
PRO
102
103
103
Y
1
-34.92
2.10
128.40
93.48
A
A
A
C
N
CD
GLY
PRO
PRO
102
103
103
Y
1
-11.71
1.60
122.70
110.99
A
A
A
O
C
N
LYS
LYS
GLN
127
127
128
Y
1
-13.98
1.60
110.90
96.92
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
134
134
134
N
1
12.14
1.50
110.90
123.04
A
A
A
CA
CB
CG1
VAL
VAL
VAL
134
134
134
N
1
-17.02
1.40
123.60
106.58
A
A
A
CD
NE
CZ
ARG
ARG
ARG
139
139
139
N
1
-3.86
0.50
120.30
116.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
139
139
139
N
1
8.42
1.40
111.50
119.92
A
A
A
CA
N
CD
PRO
PRO
PRO
152
152
152
N
1
5.75
0.90
118.30
124.05
A
A
A
CB
CG
OD2
ASP
ASP
ASP
158
158
158
N
1
-6.99
1.10
108.50
101.51
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
159
159
159
N
1
7.27
0.70
109.00
116.27
A
A
A
CE1
NE2
CD2
HIS
HIS
HIS
159
159
159
N
1
14.32
1.50
110.90
125.22
A
A
A
CA
CB
CG2
VAL
VAL
VAL
164
164
164
N
1
-10.39
1.60
122.70
112.31
A
A
A
O
C
N
GLY
GLY
TYR
165
165
166
Y
1
11.03
1.70
123.20
134.23
A
A
A
O
C
N
SER
SER
GLY
169
169
170
Y
1
12.71
2.10
122.30
135.01
A
A
A
C
N
CA
GLY
GLY
GLY
170
171
171
Y
1
-4.75
0.60
121.00
116.25
A
A
A
CB
CG
CD2
TYR
TYR
TYR
174
174
174
N
1
3.88
0.60
121.00
124.88
A
A
A
CB
CG
CD1
TYR
TYR
TYR
174
174
174
N
1
-8.32
1.20
123.30
114.98
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
187
187
187
N
1
-11.01
1.80
110.60
99.59
A
A
A
N
CA
CB
LYS
LYS
LYS
188
188
188
N
1
-4.45
0.60
121.00
116.55
A
A
A
CB
CG
CD1
TYR
TYR
TYR
190
190
190
N
1
-15.10
2.10
111.80
96.70
A
A
A
CG
CD
NE
ARG
ARG
ARG
192
192
192
N
1
-13.67
2.20
113.40
99.73
A
A
A
CA
CB
CG
LYS
LYS
LYS
208
208
208
N
1
-6.07
0.60
121.00
114.93
A
A
A
CB
CG
CD2
TYR
TYR
TYR
211
211
211
N
1
-4.45
0.60
121.00
116.55
A
A
A
CB
CG
CD2
TYR
TYR
TYR
212
212
212
N
1
14.53
1.80
110.60
125.13
A
A
A
N
CA
CB
ASN
ASN
ASN
216
216
216
N
1
18.20
2.20
113.40
131.60
A
A
A
CA
CB
CG
ASN
ASN
ASN
216
216
216
N
1
A
A
CG
CD2
HIS
HIS
61
61
0.062
0.009
1.354
1.416
N
1
A
A
N
CA
GLY
GLY
102
102
0.109
0.015
1.456
1.565
N
1
A
A
CD
OE1
GLN
GLN
114
114
0.136
0.022
1.235
1.371
N
1
A
A
O
O
HOH
HOH
329
329
1.58
1_555
6_565
1
A
ASN
116
75.04
33.18
1
A
ASP
158
-155.97
11.17
1
A
SER
209
-164.46
95.68
U**2 VALUES ARE GIVEN IN THE TEMPERATURE FACTOR FIELD OF
ATOM AND HETATM CARDS. THE TEMPERATURE FACTOR (B) IS GIVEN
BY: B = 8 * (PI)**2 * U**2.
0.155
1.8
1
1.8
133
1775
1
0
1641
0.025
0.050
refinement
RESTRAIN
PROTEASE OMEGA (E.C.3.4.22.30) (CYS 25 WITH BOUND MERCURY)
DETERMINATION OF THE STRUCTURE OF PAPAYA PROTEASE OMEGA
1
N
N
2
N
N
3
N
N
A
CYS
25
A
CYS
25
HELX_P
A
GLY
43
A
GLY
43
1
L1
19
A
GLU
50
A
GLU
50
HELX_P
A
CYS
56
A
CYS
56
1
L2
7
A
PRO
68
A
PRO
68
HELX_P
A
ASN
78
A
ASN
78
1
L3
11
A
GLU
118
A
GLU
118
HELX_P
A
GLN
128
A
GLN
128
1
R1
11
A
GLY
138
A
GLY
138
HELX_P
A
LEU
143
A
LEU
143
1
R2
6
disulf
1.994
A
CYS
22
A
SG
CYS
22
1_555
A
CYS
63
A
SG
CYS
63
1_555
disulf
2.014
A
CYS
56
A
SG
CYS
56
1_555
A
CYS
95
A
SG
CYS
95
1_555
disulf
2.050
A
CYS
153
A
SG
CYS
153
1_555
A
CYS
204
A
SG
CYS
204
1_555
metalc
2.754
A
HG
217
B
HG
HG
1_555
A
HOH
229
C
O
HOH
1_555
metalc
2.415
A
HG
217
B
HG
HG
1_555
A
CYS
25
A
SG
CYS
25
1_555
metalc
2.548
A
HG
217
B
HG
HG
1_555
A
HIS
159
A
ND1
HIS
159
1_555
metalc
2.892
A
HG
217
B
HG
HG
1_555
A
LYS
64
A
NZ
LYS
64
5_455
HYDROLASE(THIOL PROTEASE)
HYDROLASE(THIOL PROTEASE)
A
GLY
151
A
GLY
151
1
A
PRO
152
A
PRO
152
1.44
PAPA3_CARPA
UNP
1
1
P10056
MAMIPSISKLLFVAICLFVHMSVSFGDFSIVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYID
ETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAF
SAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTS
GVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEK
GYIRIKRAPGNSPGVCGLYKSSYYPTKN
133
348
1PPO
1
216
P10056
A
1
1
216
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
5
A
VAL
5
A
ASP
6
A
ASP
6
A
VAL
164
A
VAL
164
A
SER
169
A
SER
169
A
LYS
172
A
LYS
172
A
LYS
178
A
LYS
178
A
TYR
190
A
TYR
190
A
LYS
194
A
LYS
194
A
ILE
148
A
ILE
148
A
PHE
149
A
PHE
149
A
GLY
109
A
GLY
109
A
ARG
112
A
ARG
112
A
TYR
211
A
TYR
211
A
THR
214
A
THR
214
A
VAL
130
A
VAL
130
A
VAL
134
A
VAL
134
A
HIS
159
A
HIS
159
A
SER
169
A
SER
169
ACTIVE SITE
Author
3
BINDING SITE FOR RESIDUE HG A 217
Software
5
A
CYS
25
A
CYS
25
3
1_555
A
HIS
159
A
HIS
159
3
1_555
A
ASN
179
A
ASN
179
3
1_555
A
CYS
25
A
CYS
25
5
1_555
A
LYS
64
A
LYS
64
5
5_455
A
ASP
158
A
ASP
158
5
1_555
A
HIS
159
A
HIS
159
5
1_555
A
HOH
229
C
HOH
5
1_555
151
P 31 1 2