0.023057 0.000000 0.000000 0.000000 0.009771 0.000000 0.000000 0.000000 0.020020 0.00000 0.00000 0.00000 CIS PROLINE - PRO 152 THE BOND BETWEEN ATOMS O1 AND C2 IS BROKEN WHEN E-64-C BINDS TO PAPAIN IN THIS STRUCTURE. Ishida, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 43.370 102.340 49.950 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C15 H28 N2 O5 316.393 N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C H4 O 32.042 METHANOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N C N 90 S C N 91 N C N 92 N O N 93 N N N 94 S C N 95 N C N 96 N O N 97 N N N 98 N C N 99 N C N 100 N C N 101 N C N 102 N C N 103 N C N 104 N O N 105 N O N 106 N C N 107 N C N 108 N C N 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C N 143 N C N 144 N C N 145 N O N 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 N C N 163 N C N 164 N C N 165 N O N 166 N O N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N N N 178 N C N 179 N C N 180 N O N 181 N O N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N N N 188 S C N 189 N C N 190 N O N 191 N C Y 192 N C Y 193 N N Y 194 N C Y 195 N C Y 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N O N 209 N H N 210 N H N 211 N N N 212 S C N 213 N C N 214 N O N 215 S C N 216 N C N 217 N C N 218 N C N 219 N O N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N N N 234 S C N 235 N C N 236 N O N 237 N C N 238 N C N 239 N C N 240 N C N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N N N 256 S C N 257 N C N 258 N O N 259 N C N 260 N C N 261 N C N 262 N C N 263 N N N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N N N 287 S C N 288 N C N 289 N O N 290 N C Y 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N C Y 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C N 314 N C N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N O N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 R C N 345 N O N 346 N C N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N N Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C N 395 N O N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 N C N 413 N C N 414 N C N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing Y 189 N sing Y 190 N doub Y 191 N doub N 192 N sing Y 193 N sing N 194 N sing Y 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing Y 283 N doub Y 284 N sing Y 285 N sing N 286 N sing Y 287 N doub N 288 N sing Y 289 N doub N 290 N sing Y 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing Y 352 N doub Y 353 N sing Y 354 N sing N 355 N sing Y 356 N doub Y 357 N sing Y 358 N sing N 359 N sing Y 360 N sing Y 361 N doub N 362 N sing Y 363 N doub N 364 N sing Y 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing Y 380 N doub Y 381 N sing Y 382 N sing N 383 N sing Y 384 N doub N 385 N sing Y 386 N doub N 387 N sing Y 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing UK Biochem.J. BIJOAK 0043 0264-6021 287 797 803 1445241 Crystal structure of papain-E64-c complex. Binding diversity of E64-c to papain S2 and S3 subsites. 1992 US J.Biol.Chem. JBCHA3 0071 0021-9258 266 14771 Refined X-Ray Structure of Papain(Dot)E-64-C Complex at 2.1-Angstroms Resolution 1991 NE FEBS Lett. FEBLAL 0165 0014-5793 245 171 Mode of Binding of E-64-C, a Potent Thiol Protease Inhibitor, to Papain as Determined by X-Ray Crystal Analysis of the Complex 1989 NE FEBS Lett. FEBLAL 0165 0014-5793 253 134 The Importance of Val-157 Hydrophobic Interaction for Papain Inhibitory Activity of an Epoxysuccinyl Amino Acid Derivative; a Structure-Activity Relationship Based on the Crystal Structure of the Papain-E-64-C Complex 1990 10.2210/pdb1ppp/pdb pdb_00001ppp Chirality error at CB in residues 1 and 125 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 23449.346 PAPAIN 3.4.22.2 1 man polymer 316.393 N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE 1 syn non-polymer 32.042 METHANOL 1 syn non-polymer 18.015 water 205 nat water no no IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGI HYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHA VAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGI HYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHA VAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n papaya sample 3649 Carica papaya 2.36 47.94 chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Other Data collection Database references Derived calculations Other 1 0 1994-01-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2012-05-09 1 4 2024-06-05 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. STRANDS 4, 5, 6 OF S1A ARE IDENTICAL TO STRANDS 2, 3, 4 OF SHEET S1B. Y BNL 1993-03-17 REL REL E6C N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE MOH METHANOL HOH water E6C IS (2S,3S)-3-(1-(N-(3-METHYLBUTYL)AMINO)- LEUCYLCARBOXYL)OXIRANE-2-CARBOXYLATE. THIS COMPOUND WAS DESIGNED FROM THE NATURAL PRODUCT E-64. E-64-C CONSISTS OF L-TRANSEPOXYSUCCINYL, L-LEUCYL, AND ISOAMYLAMIDE MOIETIES, AND THE CARBON ATOMS OF THE EPOXY RING HAVE AN R CONFIGURATION IN THIS COMPLEX. NOTE THAT THE BOND BETWEEN ATOMS O1 AND C2 IS BROKEN WHEN E-64-C BINDS TO PAPAIN IN THIS STRUCTURE. E6C 213 2 E6C E6C 213 A MOH 214 3 MOH MOH 214 A HOH 215 4 HOH HOH 215 A HOH 216 4 HOH HOH 216 A HOH 217 4 HOH HOH 217 A HOH 218 4 HOH HOH 218 A HOH 219 4 HOH HOH 219 A HOH 220 4 HOH HOH 220 A HOH 221 4 HOH HOH 221 A HOH 222 4 HOH HOH 222 A HOH 223 4 HOH HOH 223 A HOH 224 4 HOH HOH 224 A HOH 225 4 HOH HOH 225 A HOH 226 4 HOH HOH 226 A HOH 227 4 HOH HOH 227 A HOH 228 4 HOH HOH 228 A HOH 229 4 HOH HOH 229 A HOH 230 4 HOH HOH 230 A HOH 231 4 HOH HOH 231 A HOH 232 4 HOH HOH 232 A HOH 233 4 HOH HOH 233 A HOH 234 4 HOH HOH 234 A HOH 235 4 HOH HOH 235 A HOH 236 4 HOH HOH 236 A HOH 237 4 HOH HOH 237 A HOH 238 4 HOH HOH 238 A HOH 239 4 HOH HOH 239 A HOH 240 4 HOH HOH 240 A HOH 241 4 HOH HOH 241 A HOH 242 4 HOH HOH 242 A HOH 243 4 HOH HOH 243 A HOH 244 4 HOH HOH 244 A HOH 245 4 HOH HOH 245 A HOH 246 4 HOH HOH 246 A HOH 247 4 HOH HOH 247 A HOH 248 4 HOH HOH 248 A HOH 249 4 HOH HOH 249 A HOH 250 4 HOH HOH 250 A HOH 251 4 HOH HOH 251 A HOH 252 4 HOH HOH 252 A HOH 253 4 HOH HOH 253 A HOH 254 4 HOH HOH 254 A HOH 255 4 HOH HOH 255 A HOH 256 4 HOH HOH 256 A HOH 257 4 HOH HOH 257 A HOH 258 4 HOH HOH 258 A HOH 259 4 HOH HOH 259 A HOH 260 4 HOH HOH 260 A HOH 261 4 HOH HOH 261 A HOH 262 4 HOH HOH 262 A HOH 263 4 HOH HOH 263 A HOH 264 4 HOH HOH 264 A HOH 265 4 HOH HOH 265 A HOH 266 4 HOH HOH 266 A HOH 267 4 HOH HOH 267 A HOH 268 4 HOH HOH 268 A HOH 269 4 HOH HOH 269 A HOH 270 4 HOH HOH 270 A HOH 271 4 HOH HOH 271 A HOH 272 4 HOH HOH 272 A HOH 273 4 HOH HOH 273 A HOH 274 4 HOH HOH 274 A HOH 275 4 HOH HOH 275 A HOH 276 4 HOH HOH 276 A HOH 277 4 HOH HOH 277 A HOH 278 4 HOH HOH 278 A HOH 279 4 HOH HOH 279 A HOH 280 4 HOH HOH 280 A HOH 281 4 HOH HOH 281 A HOH 282 4 HOH HOH 282 A HOH 283 4 HOH HOH 283 A HOH 284 4 HOH HOH 284 A HOH 285 4 HOH HOH 285 A HOH 286 4 HOH HOH 286 A HOH 287 4 HOH HOH 287 A HOH 288 4 HOH HOH 288 A HOH 289 4 HOH HOH 289 A HOH 290 4 HOH HOH 290 A HOH 291 4 HOH HOH 291 A HOH 292 4 HOH HOH 292 A HOH 293 4 HOH HOH 293 A HOH 294 4 HOH HOH 294 A HOH 295 4 HOH HOH 295 A HOH 296 4 HOH HOH 296 A HOH 297 4 HOH HOH 297 A HOH 298 4 HOH HOH 298 A HOH 299 4 HOH HOH 299 A HOH 300 4 HOH HOH 300 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 318 4 HOH HOH 318 A HOH 319 4 HOH HOH 319 A HOH 320 4 HOH HOH 320 A HOH 321 4 HOH HOH 321 A HOH 322 4 HOH HOH 322 A HOH 323 4 HOH HOH 323 A HOH 324 4 HOH HOH 324 A HOH 325 4 HOH HOH 325 A HOH 326 4 HOH HOH 326 A HOH 327 4 HOH HOH 327 A HOH 328 4 HOH HOH 328 A HOH 329 4 HOH HOH 329 A HOH 330 4 HOH HOH 330 A HOH 331 4 HOH HOH 331 A HOH 332 4 HOH HOH 332 A HOH 333 4 HOH HOH 333 A HOH 334 4 HOH HOH 334 A HOH 335 4 HOH HOH 335 A HOH 336 4 HOH HOH 336 A HOH 337 4 HOH HOH 337 A HOH 338 4 HOH HOH 338 A HOH 339 4 HOH HOH 339 A HOH 340 4 HOH HOH 340 A HOH 341 4 HOH HOH 341 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 344 4 HOH HOH 344 A HOH 345 4 HOH HOH 345 A HOH 346 4 HOH HOH 346 A HOH 347 4 HOH HOH 347 A HOH 348 4 HOH HOH 348 A HOH 349 4 HOH HOH 349 A HOH 350 4 HOH HOH 350 A HOH 351 4 HOH HOH 351 A HOH 352 4 HOH HOH 352 A HOH 353 4 HOH HOH 353 A HOH 354 4 HOH HOH 354 A HOH 355 4 HOH HOH 355 A HOH 356 4 HOH HOH 356 A HOH 357 4 HOH HOH 357 A HOH 358 4 HOH HOH 358 A HOH 359 4 HOH HOH 359 A HOH 360 4 HOH HOH 360 A HOH 361 4 HOH HOH 361 A HOH 362 4 HOH HOH 362 A HOH 363 4 HOH HOH 363 A HOH 364 4 HOH HOH 364 A HOH 365 4 HOH HOH 365 A HOH 366 4 HOH HOH 366 A HOH 367 4 HOH HOH 367 A HOH 368 4 HOH HOH 368 A HOH 369 4 HOH HOH 369 A HOH 370 4 HOH HOH 370 A HOH 371 4 HOH HOH 371 A HOH 372 4 HOH HOH 372 A HOH 373 4 HOH HOH 373 A HOH 374 4 HOH HOH 374 A HOH 375 4 HOH HOH 375 A HOH 376 4 HOH HOH 376 A HOH 377 4 HOH HOH 377 A HOH 378 4 HOH HOH 378 A HOH 379 4 HOH HOH 379 A HOH 380 4 HOH HOH 380 A HOH 381 4 HOH HOH 381 A HOH 382 4 HOH HOH 382 A HOH 383 4 HOH HOH 383 A HOH 384 4 HOH HOH 384 A HOH 385 4 HOH HOH 385 A HOH 386 4 HOH HOH 386 A HOH 387 4 HOH HOH 387 A HOH 388 4 HOH HOH 388 A HOH 389 4 HOH HOH 389 A HOH 390 4 HOH HOH 390 A HOH 391 4 HOH HOH 391 A HOH 392 4 HOH HOH 392 A HOH 393 4 HOH HOH 393 A HOH 394 4 HOH HOH 394 A HOH 395 4 HOH HOH 395 A HOH 396 4 HOH HOH 396 A HOH 397 4 HOH HOH 397 A HOH 398 4 HOH HOH 398 A HOH 399 4 HOH HOH 399 A HOH 400 4 HOH HOH 400 A HOH 401 4 HOH HOH 401 A HOH 402 4 HOH HOH 402 A HOH 403 4 HOH HOH 403 A HOH 404 4 HOH HOH 404 A HOH 405 4 HOH HOH 405 A HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A HOH 408 4 HOH HOH 408 A HOH 409 4 HOH HOH 409 A HOH 410 4 HOH HOH 410 A HOH 411 4 HOH HOH 411 A HOH 412 4 HOH HOH 412 A HOH 413 4 HOH HOH 413 A HOH 414 4 HOH HOH 414 A HOH 415 4 HOH HOH 415 A HOH 416 4 HOH HOH 416 A HOH 417 4 HOH HOH 417 A HOH 418 4 HOH HOH 418 A HOH 419 4 HOH HOH 419 A ILE 1 n 1 ILE 1 A PRO 2 n 2 PRO 2 A GLU 3 n 3 GLU 3 A TYR 4 n 4 TYR 4 A VAL 5 n 5 VAL 5 A ASP 6 n 6 ASP 6 A TRP 7 n 7 TRP 7 A ARG 8 n 8 ARG 8 A GLN 9 n 9 GLN 9 A LYS 10 n 10 LYS 10 A GLY 11 n 11 GLY 11 A ALA 12 n 12 ALA 12 A VAL 13 n 13 VAL 13 A THR 14 n 14 THR 14 A PRO 15 n 15 PRO 15 A VAL 16 n 16 VAL 16 A LYS 17 n 17 LYS 17 A ASN 18 n 18 ASN 18 A GLN 19 n 19 GLN 19 A GLY 20 n 20 GLY 20 A SER 21 n 21 SER 21 A CYS 22 n 22 CYS 22 A GLY 23 n 23 GLY 23 A SER 24 n 24 SER 24 A CYS 25 n 25 CYS 25 A TRP 26 n 26 TRP 26 A ALA 27 n 27 ALA 27 A PHE 28 n 28 PHE 28 A SER 29 n 29 SER 29 A ALA 30 n 30 ALA 30 A VAL 31 n 31 VAL 31 A VAL 32 n 32 VAL 32 A THR 33 n 33 THR 33 A ILE 34 n 34 ILE 34 A GLU 35 n 35 GLU 35 A GLY 36 n 36 GLY 36 A ILE 37 n 37 ILE 37 A ILE 38 n 38 ILE 38 A LYS 39 n 39 LYS 39 A ILE 40 n 40 ILE 40 A ARG 41 n 41 ARG 41 A THR 42 n 42 THR 42 A GLY 43 n 43 GLY 43 A ASN 44 n 44 ASN 44 A LEU 45 n 45 LEU 45 A ASN 46 n 46 ASN 46 A GLN 47 n 47 GLN 47 A TYR 48 n 48 TYR 48 A SER 49 n 49 SER 49 A GLU 50 n 50 GLU 50 A GLN 51 n 51 GLN 51 A GLU 52 n 52 GLU 52 A LEU 53 n 53 LEU 53 A LEU 54 n 54 LEU 54 A ASP 55 n 55 ASP 55 A CYS 56 n 56 CYS 56 A ASP 57 n 57 ASP 57 A ARG 58 n 58 ARG 58 A ARG 59 n 59 ARG 59 A SER 60 n 60 SER 60 A TYR 61 n 61 TYR 61 A GLY 62 n 62 GLY 62 A CYS 63 n 63 CYS 63 A ASN 64 n 64 ASN 64 A GLY 65 n 65 GLY 65 A GLY 66 n 66 GLY 66 A TYR 67 n 67 TYR 67 A PRO 68 n 68 PRO 68 A TRP 69 n 69 TRP 69 A SER 70 n 70 SER 70 A ALA 71 n 71 ALA 71 A LEU 72 n 72 LEU 72 A GLN 73 n 73 GLN 73 A LEU 74 n 74 LEU 74 A VAL 75 n 75 VAL 75 A ALA 76 n 76 ALA 76 A GLN 77 n 77 GLN 77 A TYR 78 n 78 TYR 78 A GLY 79 n 79 GLY 79 A ILE 80 n 80 ILE 80 A HIS 81 n 81 HIS 81 A TYR 82 n 82 TYR 82 A ARG 83 n 83 ARG 83 A ASN 84 n 84 ASN 84 A THR 85 n 85 THR 85 A TYR 86 n 86 TYR 86 A PRO 87 n 87 PRO 87 A TYR 88 n 88 TYR 88 A GLU 89 n 89 GLU 89 A GLY 90 n 90 GLY 90 A VAL 91 n 91 VAL 91 A GLN 92 n 92 GLN 92 A ARG 93 n 93 ARG 93 A TYR 94 n 94 TYR 94 A CYS 95 n 95 CYS 95 A ARG 96 n 96 ARG 96 A SER 97 n 97 SER 97 A ARG 98 n 98 ARG 98 A GLU 99 n 99 GLU 99 A LYS 100 n 100 LYS 100 A GLY 101 n 101 GLY 101 A PRO 102 n 102 PRO 102 A TYR 103 n 103 TYR 103 A ALA 104 n 104 ALA 104 A ALA 105 n 105 ALA 105 A LYS 106 n 106 LYS 106 A THR 107 n 107 THR 107 A ASP 108 n 108 ASP 108 A GLY 109 n 109 GLY 109 A VAL 110 n 110 VAL 110 A ARG 111 n 111 ARG 111 A GLN 112 n 112 GLN 112 A VAL 113 n 113 VAL 113 A GLN 114 n 114 GLN 114 A PRO 115 n 115 PRO 115 A TYR 116 n 116 TYR 116 A ASN 117 n 117 ASN 117 A GLN 118 n 118 GLN 118 A GLY 119 n 119 GLY 119 A ALA 120 n 120 ALA 120 A LEU 121 n 121 LEU 121 A LEU 122 n 122 LEU 122 A TYR 123 n 123 TYR 123 A SER 124 n 124 SER 124 A ILE 125 n 125 ILE 125 A ALA 126 n 126 ALA 126 A ASN 127 n 127 ASN 127 A GLN 128 n 128 GLN 128 A PRO 129 n 129 PRO 129 A VAL 130 n 130 VAL 130 A SER 131 n 131 SER 131 A VAL 132 n 132 VAL 132 A VAL 133 n 133 VAL 133 A LEU 134 n 134 LEU 134 A GLN 135 n 135 GLN 135 A ALA 136 n 136 ALA 136 A ALA 137 n 137 ALA 137 A GLY 138 n 138 GLY 138 A LYS 139 n 139 LYS 139 A ASP 140 n 140 ASP 140 A PHE 141 n 141 PHE 141 A GLN 142 n 142 GLN 142 A LEU 143 n 143 LEU 143 A TYR 144 n 144 TYR 144 A ARG 145 n 145 ARG 145 A GLY 146 n 146 GLY 146 A GLY 147 n 147 GLY 147 A ILE 148 n 148 ILE 148 A PHE 149 n 149 PHE 149 A VAL 150 n 150 VAL 150 A GLY 151 n 151 GLY 151 A PRO 152 n 152 PRO 152 A CYS 153 n 153 CYS 153 A GLY 154 n 154 GLY 154 A ASN 155 n 155 ASN 155 A LYS 156 n 156 LYS 156 A VAL 157 n 157 VAL 157 A ASP 158 n 158 ASP 158 A HIS 159 n 159 HIS 159 A ALA 160 n 160 ALA 160 A VAL 161 n 161 VAL 161 A ALA 162 n 162 ALA 162 A ALA 163 n 163 ALA 163 A VAL 164 n 164 VAL 164 A GLY 165 n 165 GLY 165 A TYR 166 n 166 TYR 166 A GLY 167 n 167 GLY 167 A PRO 168 n 168 PRO 168 A ASN 169 n 169 ASN 169 A TYR 170 n 170 TYR 170 A ILE 171 n 171 ILE 171 A LEU 172 n 172 LEU 172 A ILE 173 n 173 ILE 173 A LYS 174 n 174 LYS 174 A ASN 175 n 175 ASN 175 A SER 176 n 176 SER 176 A TRP 177 n 177 TRP 177 A GLY 178 n 178 GLY 178 A THR 179 n 179 THR 179 A GLY 180 n 180 GLY 180 A TRP 181 n 181 TRP 181 A GLY 182 n 182 GLY 182 A GLU 183 n 183 GLU 183 A ASN 184 n 184 ASN 184 A GLY 185 n 185 GLY 185 A TYR 186 n 186 TYR 186 A ILE 187 n 187 ILE 187 A ARG 188 n 188 ARG 188 A ILE 189 n 189 ILE 189 A LYS 190 n 190 LYS 190 A ARG 191 n 191 ARG 191 A GLY 192 n 192 GLY 192 A THR 193 n 193 THR 193 A GLY 194 n 194 GLY 194 A ASN 195 n 195 ASN 195 A SER 196 n 196 SER 196 A TYR 197 n 197 TYR 197 A GLY 198 n 198 GLY 198 A VAL 199 n 199 VAL 199 A CYS 200 n 200 CYS 200 A GLY 201 n 201 GLY 201 A LEU 202 n 202 LEU 202 A TYR 203 n 203 TYR 203 A THR 204 n 204 THR 204 A SER 205 n 205 SER 205 A SER 206 n 206 SER 206 A PHE 207 n 207 PHE 207 A TYR 208 n 208 TYR 208 A PRO 209 n 209 PRO 209 A VAL 210 n 210 VAL 210 A LYS 211 n 211 LYS 211 A ASN 212 n 212 ASN 212 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 113 A N VAL 113 A O SER 206 A O SER 206 A N PHE 207 A N PHE 207 A O SER 131 A O SER 131 A N LEU 134 A N LEU 134 A O HIS 159 A O HIS 159 A O GLY 165 A O GLY 165 A N LEU 172 A N LEU 172 A O ILE 171 A O ILE 171 A N ILE 189 A N ILE 189 A O VAL 5 A O VAL 5 A N TYR 166 A N TYR 166 A O GLY 165 A O GLY 165 A N LEU 172 A N LEU 172 A O ILE 171 A O ILE 171 A N ILE 189 A N ILE 189 1 A CB ILE 1 WRONG HAND 1 A CB ILE 125 WRONG HAND 1 A CB ILE 173 WRONG HAND 1 A A O NZ LYS LYS 106 211 2.07 1 A A NH2 O ARG HOH 58 357 2.17 1 A A O OG1 GLY THR 201 204 2.19 1 A ARG 145 0.075 SIDE CHAIN 1 14.63 2.00 111.60 126.23 A A A CB CA C ILE ILE ILE 1 1 1 N 1 5.48 0.90 118.30 123.78 A A A CB CG OD1 ASP ASP ASP 6 6 6 N 1 3.92 0.60 121.00 124.92 A A A CB CG CD1 TYR TYR TYR 48 48 48 N 1 13.75 2.00 110.40 124.15 A A A CB CA C ARG ARG ARG 59 59 59 N 1 -10.84 1.80 110.60 99.76 A A A N CA CB ARG ARG ARG 59 59 59 N 1 16.05 2.20 113.40 129.45 A A A CA CB CG ARG ARG ARG 59 59 59 N 1 -4.74 0.50 120.30 115.56 A A A NE CZ NH1 ARG ARG ARG 59 59 59 N 1 6.17 0.50 120.30 126.47 A A A NE CZ NH2 ARG ARG ARG 59 59 59 N 1 18.30 2.10 122.30 140.60 A A A C N CA ASN GLY GLY 64 65 65 Y 1 18.05 2.50 113.10 131.15 A A A N CA C GLY GLY GLY 65 65 65 N 1 6.17 0.60 121.00 127.17 A A A CB CG CD2 TYR TYR TYR 67 67 67 N 1 -5.70 0.60 121.00 115.30 A A A CB CG CD1 TYR TYR TYR 67 67 67 N 1 12.61 1.40 123.60 136.21 A A A CD NE CZ ARG ARG ARG 83 83 83 N 1 6.83 0.50 120.30 127.13 A A A NE CZ NH1 ARG ARG ARG 83 83 83 N 1 -8.71 0.50 120.30 111.59 A A A NE CZ NH2 ARG ARG ARG 83 83 83 N 1 4.81 0.60 121.00 125.81 A A A CB CG CD2 TYR TYR TYR 86 86 86 N 1 -3.80 0.60 121.00 117.20 A A A CB CG CD1 TYR TYR TYR 86 86 86 N 1 9.68 1.50 110.90 120.58 A A A CA CB CG1 VAL VAL VAL 91 91 91 N 1 5.78 0.50 120.30 126.08 A A A NE CZ NH1 ARG ARG ARG 93 93 93 N 1 -6.81 0.50 120.30 113.49 A A A NE CZ NH2 ARG ARG ARG 93 93 93 N 1 -7.79 1.10 119.40 111.61 A A A NH1 CZ NH2 ARG ARG ARG 96 96 96 N 1 3.90 0.50 120.30 124.20 A A A NE CZ NH1 ARG ARG ARG 96 96 96 N 1 3.89 0.50 120.30 124.19 A A A NE CZ NH2 ARG ARG ARG 96 96 96 N 1 9.90 1.40 123.60 133.50 A A A CD NE CZ ARG ARG ARG 98 98 98 N 1 17.63 2.20 113.40 131.03 A A A CA CB CG GLU GLU GLU 99 99 99 N 1 -15.74 1.80 120.60 104.86 A A A CA C O GLY GLY GLY 146 146 146 N 1 16.59 2.00 116.20 132.79 A A A CA C N GLY GLY GLY 146 146 147 Y 1 20.47 2.50 113.10 133.57 A A A N CA C GLY GLY GLY 147 147 147 N 1 -11.38 1.80 110.60 99.22 A A A N CA CB ASP ASP ASP 158 158 158 N 1 13.69 0.90 118.30 131.99 A A A CB CG OD1 ASP ASP ASP 158 158 158 N 1 -7.65 0.90 118.30 110.65 A A A CB CG OD2 ASP ASP ASP 158 158 158 N 1 13.62 2.00 116.20 129.82 A A A CA C N TRP TRP GLY 177 177 178 Y 1 -8.95 1.20 123.30 114.35 A A A OE1 CD OE2 GLU GLU GLU 183 183 183 N 1 12.75 2.00 118.30 131.05 A A A CG CD OE1 GLU GLU GLU 183 183 183 N 1 3.38 0.50 120.30 123.68 A A A NE CZ NH1 ARG ARG ARG 188 188 188 N 1 -4.55 0.60 121.00 116.45 A A A CB CG CD2 TYR TYR TYR 203 203 203 N 1 4.01 0.60 121.00 125.01 A A A CB CG CD1 TYR TYR TYR 203 203 203 N 1 -11.11 1.50 110.50 99.39 A A A N CA CB SER SER SER 205 205 205 N 1 -9.25 1.50 110.50 101.25 A A A N CA CB SER SER SER 206 206 206 N 1 4.70 0.60 121.00 125.70 A A A CB CG CD2 TYR TYR TYR 208 208 208 N 1 -5.56 0.60 121.00 115.44 A A A CB CG CD1 TYR TYR TYR 208 208 208 N 1 A A O O HOH HOH 242 307 1.69 1_555 1_655 1 A A OH O TYR HOH 94 275 1.78 1_555 4_456 1 A A O O HOH HOH 253 370 1.94 1_555 2_865 1 A SER 21 -76.96 25.79 1 A ASN 64 80.23 43.58 1 A TYR 78 -96.96 -93.51 1 A GLN 128 176.09 158.81 1 A ARG 145 -142.25 18.75 1 A ASP 158 -153.63 9.80 1 A SER 205 -166.83 100.61 0.194 1.9 1 1.9 205 1884 24 0 1655 0.049 refinement PROLSQ CRYSTAL STRUCTURE OF PAPAIN-E64-C COMPLEX. BINDING DIVERSITY OF E64-C TO PAPAIN S2 AND S3 SUBSITES 1 N N 2 N N 3 N N 4 N N A SER 24 A SER 24 HELX_P INCLUDING 3/10 REGION A THR 42 A THR 42 1 L1 19 A GLU 50 A GLU 50 HELX_P A ASP 57 A ASP 57 1 L2 8 A TYR 67 A TYR 67 HELX_P A TYR 78 A TYR 78 1 L3 12 A ASN 117 A ASN 117 HELX_P INCLUDING 3/10 REGION A ASN 127 A ASN 127 1 R1 11 A GLY 138 A GLY 138 HELX_P INCLUDING 3/10 REGION A GLN 142 A GLN 142 1 R2 5 disulf 2.042 A CYS 22 A SG CYS 22 1_555 A CYS 63 A SG CYS 63 1_555 disulf 2.053 A CYS 56 A SG CYS 56 1_555 A CYS 95 A SG CYS 95 1_555 disulf 2.080 A CYS 153 A SG CYS 153 1_555 A CYS 200 A SG CYS 200 1_555 covale 1.798 none A CYS 25 A SG CYS 25 1_555 A E6C 213 B C2 E6C 1_555 HYDROLASE(SULFHYDRYL PROTEINASE) HYDROLASE(SULFHYDRYL PROTEINASE) A GLY 151 A GLY 151 1 A PRO 152 A PRO 152 3.41 PAPA_CARPA UNP 1 1 P00784 MAMIPSISKLLFVAICLFVYMGLSFGDFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYID ETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWA FSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKT DGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKNSWGTGWGENGYI RIKRGTGNSYGVCGLYTSSFYPVKN 134 345 1PPP 1 212 P00784 A 1 1 212 1 GLU conflict GLN 47 1PPP A P00784 UNP 180 47 1 GLU conflict GLN 118 1PPP A P00784 UNP 251 118 1 GLU conflict GLN 135 1PPP A P00784 UNP 268 135 6 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 108 A ASP 108 A VAL 113 A VAL 113 A SER 206 A SER 206 A VAL 210 A VAL 210 A VAL 130 A VAL 130 A LEU 134 A LEU 134 A ASP 158 A ASP 158 A GLY 167 A GLY 167 A TYR 170 A TYR 170 A ASN 175 A ASN 175 A GLY 185 A GLY 185 A ARG 191 A ARG 191 A VAL 5 A VAL 5 A TRP 7 A TRP 7 A ASP 158 A ASP 158 A GLY 167 A GLY 167 A TYR 170 A TYR 170 A ASN 175 A ASN 175 A GLY 185 A GLY 185 A ARG 191 A ARG 191 BINDING SITE FOR RESIDUE E6C A 213 A E6C 213 Software 10 BINDING SITE FOR RESIDUE MOH A 214 A MOH 214 Software 3 A GLN 19 A GLN 19 10 1_555 A GLY 23 A GLY 23 10 1_555 A CYS 25 A CYS 25 10 1_555 A TRP 26 A TRP 26 10 1_555 A GLY 65 A GLY 65 10 1_555 A GLY 66 A GLY 66 10 1_555 A VAL 157 A VAL 157 10 1_555 A ASP 158 A ASP 158 10 1_555 A HIS 159 A HIS 159 10 1_555 A HOH 287 D HOH 10 1_555 A VAL 5 A VAL 5 3 1_555 A ASP 6 A ASP 6 3 1_555 A TYR 170 A TYR 170 3 1_555 19 P 21 21 21