0.016666 0.009622 0.000000 0.000000 0.019245 0.000000 0.000000 0.000000 0.010459 0.00000 0.00000 0.00000 Mooers, B.H. Datta, D. Baase, W.A. Zollars, E.S. Mayo, S.L. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 60.001 60.001 95.615 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N O N 77 N S N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N CL N 85 N N N 86 R C N 87 N C N 88 N O N 89 N C N 90 N S N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 S C N 101 N C N 102 N O N 103 N C N 104 N C N 105 N C N 106 N O N 107 N N N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N N N 120 S C N 121 N C N 122 N O N 123 N C N 124 N C N 125 N C N 126 N O N 127 N O N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 N C N 140 N C N 141 N O N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 N C Y 153 N C Y 154 N N Y 155 N C Y 156 N C Y 157 N N N 158 N O N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N O N 170 N H N 171 N H N 172 N N N 173 S C N 174 N C N 175 N O N 176 S C N 177 N C N 178 N C N 179 N C N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N K N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N C N 203 N O N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N C N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 S C N 244 N C N 245 N O N 246 N C N 247 N C N 248 N S N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N N N 263 S C N 264 N C N 265 N O N 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C Y 271 N C Y 272 N C N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C N 290 N C N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C N 307 N O N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N N N 317 S C N 318 N C N 319 N O N 320 R C N 321 N O N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N N Y 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C N 371 N O N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 N C N 389 N C N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing Y 257 N doub Y 258 N sing Y 259 N sing N 260 N sing Y 261 N doub N 262 N sing Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N sing Y 335 N doub N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N doub N 359 N sing Y 360 N doub N 361 N sing Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 332 741 756 10.1016/S0022-2836(03)00856-8 12963380 Repacking the Core of T4 Lysozyme by Automated Design 2003 10.2210/pdb1pqi/pdb pdb_00001pqi Chirality errors at CA center of Lys 162. 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298.0 1 MIRRORS IMAGE PLATE 2001-10-11 RIGAKU RAXIS IV YALE MIRRORS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 18724.449 Lysozyme 3.2.1.17 C54T/I78V/V87M/C97A/L118I/M120Y/L133F/V149I/T152V 1 man polymer 39.098 POTASSIUM ION 1 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 78.133 BETA-MERCAPTOETHANOL 1 syn non-polymer 18.015 water 180 nat water Lysis protein, Muramidase, Endolysin no no MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGVLR NAKLKPMYDSLDAVRRAALINMVFQMGETGVAGFTNSLRYLQQKRWDEAAVNFAKSRWYNQTPNRAKRIITVFRTGTWDA YKNL MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGVLR NAKLKPMYDSLDAVRRAALINMVFQMGETGVAGFTNSLRYLQQKRWDEAAVNFAKSRWYNQTPNRAKRIITVFRTGTWDA YKNL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n T4-like viruses Enterobacteria phage T4 sensu lato Escherichia sample E 10665 Enterobacteria phage T4 562 Escherichia coli RR1 plasmid PHS1403 1 2.67 53.59 6.70 2 M Na/K Phosphate, 550 mM NaCl, 40 mM BME, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 6.70 277 database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2003-10-07 1 1 2008-04-29 1 2 2011-07-13 1 3 2021-10-27 1 4 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id T4 Lysozyme Core Repacking Mutant V87I/TA Repacking of the Core of T4 Lysozyme by Automated Design Repacking of the Core of T4 Lysozyme by Automated Design T4 LYSOZYME CORE REPACKING BACK-REVERTANT L102M/CORE10 CORE REDESIGN BACK-REVERTANT I103V/CORE10 T4 LYSOZYME CORE REPACKING MUTANT L133F/TA T4 LYSOZYME CORE REPACKING MUTANT M120Y/TA T4 LYSOZYME CORE REPACKING MUTANT V103I/TA T4 LYSOZYME CORE REPACKING MUTANT CORE10/TA Repacking of the Core of T4 Lysozyme by Automated Design T4 Lysozyme Core Repacking Mutant V149I/T152V/TA T4 Lysozyme Core Repacking Mutant L118I/TA RCSB Y RCSB 2003-06-18 REL REL K POTASSIUM ION CL CHLORIDE ION BME BETA-MERCAPTOETHANOL HOH water 1L63 PDB ENTRY 1L63 PDB experimental model K 972 2 K K 972 A CL 973 3 CL CL 973 A CL 978 3 CL CL 978 A BME 966 4 BME BME 966 A HOH 171 5 HOH HOH 171 A HOH 172 5 HOH HOH 172 A HOH 174 5 HOH HOH 174 A HOH 175 5 HOH HOH 175 A HOH 177 5 HOH HOH 177 A HOH 179 5 HOH HOH 179 A HOH 180 5 HOH HOH 180 A HOH 181 5 HOH HOH 181 A HOH 182 5 HOH HOH 182 A HOH 183 5 HOH HOH 183 A HOH 184 5 HOH HOH 184 A HOH 185 5 HOH HOH 185 A HOH 186 5 HOH HOH 186 A HOH 187 5 HOH HOH 187 A HOH 188 5 HOH HOH 188 A HOH 190 5 HOH HOH 190 A HOH 191 5 HOH HOH 191 A HOH 192 5 HOH HOH 192 A HOH 193 5 HOH HOH 193 A HOH 194 5 HOH HOH 194 A HOH 195 5 HOH HOH 195 A HOH 196 5 HOH HOH 196 A HOH 197 5 HOH HOH 197 A HOH 200 5 HOH HOH 200 A HOH 202 5 HOH HOH 202 A HOH 204 5 HOH HOH 204 A HOH 206 5 HOH HOH 206 A HOH 207 5 HOH HOH 207 A HOH 208 5 HOH HOH 208 A HOH 209 5 HOH HOH 209 A HOH 211 5 HOH HOH 211 A HOH 213 5 HOH HOH 213 A HOH 214 5 HOH HOH 214 A HOH 215 5 HOH HOH 215 A HOH 216 5 HOH HOH 216 A HOH 217 5 HOH HOH 217 A HOH 218 5 HOH HOH 218 A HOH 219 5 HOH HOH 219 A HOH 220 5 HOH HOH 220 A HOH 221 5 HOH HOH 221 A HOH 223 5 HOH HOH 223 A HOH 224 5 HOH HOH 224 A HOH 225 5 HOH HOH 225 A HOH 226 5 HOH HOH 226 A HOH 227 5 HOH HOH 227 A HOH 228 5 HOH HOH 228 A HOH 230 5 HOH HOH 230 A HOH 231 5 HOH HOH 231 A HOH 232 5 HOH HOH 232 A HOH 233 5 HOH HOH 233 A HOH 234 5 HOH HOH 234 A HOH 236 5 HOH HOH 236 A HOH 237 5 HOH HOH 237 A HOH 238 5 HOH HOH 238 A HOH 239 5 HOH HOH 239 A HOH 240 5 HOH HOH 240 A HOH 242 5 HOH HOH 242 A HOH 244 5 HOH HOH 244 A HOH 245 5 HOH HOH 245 A HOH 247 5 HOH HOH 247 A HOH 248 5 HOH HOH 248 A HOH 249 5 HOH HOH 249 A HOH 250 5 HOH HOH 250 A HOH 251 5 HOH HOH 251 A HOH 256 5 HOH HOH 256 A HOH 257 5 HOH HOH 257 A HOH 259 5 HOH HOH 259 A HOH 260 5 HOH HOH 260 A HOH 261 5 HOH HOH 261 A HOH 262 5 HOH HOH 262 A HOH 266 5 HOH HOH 266 A HOH 269 5 HOH HOH 269 A HOH 270 5 HOH HOH 270 A HOH 272 5 HOH HOH 272 A HOH 273 5 HOH HOH 273 A HOH 274 5 HOH HOH 274 A HOH 276 5 HOH HOH 276 A HOH 278 5 HOH HOH 278 A HOH 279 5 HOH HOH 279 A HOH 281 5 HOH HOH 281 A HOH 282 5 HOH HOH 282 A HOH 283 5 HOH HOH 283 A HOH 284 5 HOH HOH 284 A HOH 285 5 HOH HOH 285 A HOH 286 5 HOH HOH 286 A HOH 288 5 HOH HOH 288 A HOH 292 5 HOH HOH 292 A HOH 293 5 HOH HOH 293 A HOH 295 5 HOH HOH 295 A HOH 296 5 HOH HOH 296 A HOH 297 5 HOH HOH 297 A HOH 299 5 HOH HOH 299 A HOH 304 5 HOH HOH 304 A HOH 306 5 HOH HOH 306 A HOH 308 5 HOH HOH 308 A HOH 311 5 HOH HOH 311 A HOH 312 5 HOH HOH 312 A HOH 313 5 HOH HOH 313 A HOH 314 5 HOH HOH 314 A HOH 317 5 HOH HOH 317 A HOH 320 5 HOH HOH 320 A HOH 403 5 HOH HOH 403 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 408 5 HOH HOH 408 A HOH 409 5 HOH HOH 409 A HOH 411 5 HOH HOH 411 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A HOH 415 5 HOH HOH 415 A HOH 417 5 HOH HOH 417 A HOH 418 5 HOH HOH 418 A HOH 420 5 HOH HOH 420 A HOH 421 5 HOH HOH 421 A HOH 423 5 HOH HOH 423 A HOH 424 5 HOH HOH 424 A HOH 425 5 HOH HOH 425 A HOH 427 5 HOH HOH 427 A HOH 428 5 HOH HOH 428 A HOH 429 5 HOH HOH 429 A HOH 430 5 HOH HOH 430 A HOH 432 5 HOH HOH 432 A HOH 435 5 HOH HOH 435 A HOH 437 5 HOH HOH 437 A HOH 439 5 HOH HOH 439 A HOH 440 5 HOH HOH 440 A HOH 442 5 HOH HOH 442 A HOH 443 5 HOH HOH 443 A HOH 444 5 HOH HOH 444 A HOH 445 5 HOH HOH 445 A HOH 448 5 HOH HOH 448 A HOH 450 5 HOH HOH 450 A HOH 456 5 HOH HOH 456 A HOH 457 5 HOH HOH 457 A HOH 458 5 HOH HOH 458 A HOH 461 5 HOH HOH 461 A HOH 462 5 HOH HOH 462 A HOH 463 5 HOH HOH 463 A HOH 466 5 HOH HOH 466 A HOH 467 5 HOH HOH 467 A HOH 471 5 HOH HOH 471 A HOH 473 5 HOH HOH 473 A HOH 474 5 HOH HOH 474 A HOH 475 5 HOH HOH 475 A HOH 476 5 HOH HOH 476 A HOH 477 5 HOH HOH 477 A HOH 480 5 HOH HOH 480 A HOH 482 5 HOH HOH 482 A HOH 492 5 HOH HOH 492 A HOH 495 5 HOH HOH 495 A HOH 497 5 HOH HOH 497 A HOH 498 5 HOH HOH 498 A HOH 500 5 HOH HOH 500 A HOH 501 5 HOH HOH 501 A HOH 502 5 HOH HOH 502 A HOH 503 5 HOH HOH 503 A HOH 504 5 HOH HOH 504 A HOH 505 5 HOH HOH 505 A HOH 506 5 HOH HOH 506 A HOH 507 5 HOH HOH 507 A HOH 508 5 HOH HOH 508 A HOH 510 5 HOH HOH 510 A HOH 512 5 HOH HOH 512 A HOH 513 5 HOH HOH 513 A HOH 514 5 HOH HOH 514 A HOH 515 5 HOH HOH 515 A HOH 516 5 HOH HOH 516 A HOH 518 5 HOH HOH 518 A HOH 519 5 HOH HOH 519 A HOH 520 5 HOH HOH 520 A HOH 521 5 HOH HOH 521 A HOH 522 5 HOH HOH 522 A HOH 524 5 HOH HOH 524 A HOH 525 5 HOH HOH 525 A HOH 526 5 HOH HOH 526 A HOH 527 5 HOH HOH 527 A HOH 528 5 HOH HOH 528 A HOH 529 5 HOH HOH 529 A HOH 530 5 HOH HOH 530 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A THR 21 n 21 THR 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A THR 54 n 54 THR 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A VAL 78 n 78 VAL 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A MET 87 n 87 MET 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A ALA 97 n 97 ALA 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A MET 102 n 102 MET 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLN 105 n 105 GLN 105 A MET 106 n 106 MET 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A SER 117 n 117 SER 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A TYR 120 n 120 TYR 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A PHE 133 n 133 PHE 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A THR 142 n 142 THR 142 A PRO 143 n 143 PRO 143 A ASN 144 n 144 ASN 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A ILE 149 n 149 ILE 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A VAL 152 n 152 VAL 152 A PHE 153 n 153 PHE 153 A ARG 154 n 154 ARG 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A ASN 163 n 163 ASN 163 A LEU 164 n 164 LEU 164 A 0.204 0.2 0.266 1341 3.0 author_defined_assembly 1 monomeric A GLU 11 A OE2 GLU 11 1_555 A K 972 B K K 1_555 A GLU 11 A O GLU 11 1_555 88.7 A GLU 11 A OE2 GLU 11 1_555 A K 972 B K K 1_555 A ARG 14 A NH2 ARG 14 1_555 152.3 A GLU 11 A O GLU 11 1_555 A K 972 B K K 1_555 A ARG 14 A NH2 ARG 14 1_555 65.8 A GLU 11 A OE2 GLU 11 1_555 A K 972 B K K 1_555 A TYR 18 A OH TYR 18 1_555 109.6 A GLU 11 A O GLU 11 1_555 A K 972 B K K 1_555 A TYR 18 A OH TYR 18 1_555 84.8 A ARG 14 A NH2 ARG 14 1_555 A K 972 B K K 1_555 A TYR 18 A OH TYR 18 1_555 79.9 A GLU 11 A OE2 GLU 11 1_555 A K 972 B K K 1_555 A HOH 204 F O HOH 1_555 58.1 A GLU 11 A O GLU 11 1_555 A K 972 B K K 1_555 A HOH 204 F O HOH 1_555 140.2 A ARG 14 A NH2 ARG 14 1_555 A K 972 B K K 1_555 A HOH 204 F O HOH 1_555 149.6 A TYR 18 A OH TYR 18 1_555 A K 972 B K K 1_555 A HOH 204 F O HOH 1_555 86.8 A GLU 11 A OE2 GLU 11 1_555 A K 972 B K K 1_555 A HOH 304 F O HOH 1_555 124.1 A GLU 11 A O GLU 11 1_555 A K 972 B K K 1_555 A HOH 304 F O HOH 1_555 121.4 A ARG 14 A NH2 ARG 14 1_555 A K 972 B K K 1_555 A HOH 304 F O HOH 1_555 66.9 A TYR 18 A OH TYR 18 1_555 A K 972 B K K 1_555 A HOH 304 F O HOH 1_555 118.3 A HOH 204 F O HOH 1_555 A K 972 B K K 1_555 A HOH 304 F O HOH 1_555 96.7 A GLU 11 A OE2 GLU 11 1_555 A K 972 B K K 1_555 A HOH 510 F O HOH 1_555 84.9 A GLU 11 A O GLU 11 1_555 A K 972 B K K 1_555 A HOH 510 F O HOH 1_555 156.8 A ARG 14 A NH2 ARG 14 1_555 A K 972 B K K 1_555 A HOH 510 F O HOH 1_555 114.2 A TYR 18 A OH TYR 18 1_555 A K 972 B K K 1_555 A HOH 510 F O HOH 1_555 118.4 A HOH 204 F O HOH 1_555 A K 972 B K K 1_555 A HOH 510 F O HOH 1_555 50.1 A HOH 304 F O HOH 1_555 A K 972 B K K 1_555 A HOH 510 F O HOH 1_555 48.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 18 A N TYR 18 A O THR 26 A O THR 26 A N TYR 25 A N TYR 25 A O LEU 33 A O LEU 33 1 8.94 0.90 118.30 127.24 A A A CB CG OD1 ASP ASP ASP 47 47 47 N 1 -7.66 0.90 118.30 110.64 A A A CB CG OD2 ASP ASP ASP 47 47 47 N 1 10.91 1.80 110.60 121.51 A A A N CA CB ASN ASN ASN 55 55 55 N 1 5.83 0.90 118.30 124.13 A A A CB CG OD1 ASP ASP ASP 61 61 61 N 1 -7.22 0.90 118.30 111.08 A A A CB CG OD2 ASP ASP ASP 61 61 61 N 1 6.64 0.90 118.30 124.94 A A A CB CG OD1 ASP ASP ASP 72 72 72 N 1 -9.67 0.90 118.30 108.63 A A A CB CG OD2 ASP ASP ASP 72 72 72 N 1 7.22 0.90 118.30 125.52 A A A CB CG OD1 ASP ASP ASP 89 89 89 N 1 -7.22 0.90 118.30 111.08 A A A CB CG OD2 ASP ASP ASP 89 89 89 N 1 5.89 0.90 118.30 124.19 A A A CB CG OD1 ASP ASP ASP 92 92 92 N 1 -6.88 0.90 118.30 111.42 A A A CB CG OD2 ASP ASP ASP 92 92 92 N 1 5.94 0.50 120.30 126.24 A A A NE CZ NH1 ARG ARG ARG 119 119 119 N 1 -5.24 0.50 120.30 115.06 A A A NE CZ NH2 ARG ARG ARG 119 119 119 N 1 7.67 0.90 118.30 125.97 A A A CB CG OD1 ASP ASP ASP 127 127 127 N 1 5.90 0.90 118.30 124.20 A A A CB CG OD1 ASP ASP ASP 159 159 159 N 1 -16.60 1.80 110.60 94.00 A A A N CA CB TYR TYR TYR 161 161 161 N 1 14.37 0.60 121.00 135.37 A A A CB CG CD2 TYR TYR TYR 161 161 161 N 1 -13.63 0.60 121.00 107.37 A A A CB CG CD1 TYR TYR TYR 161 161 161 N 1 13.93 1.80 110.60 124.53 A A A N CA CB LYS LYS LYS 162 162 162 N 1 A ASP 20 -76.85 -169.76 1 A ILE 29 -102.11 74.56 1 A PHE 114 -88.10 37.81 1 A LYS 162 -43.21 -19.05 1 A ASN 163 -152.14 47.14 WORKING AND TEST SET NOT COMBINED 0.266 0.2 0.204 0.204 1.57 22.83 1341 29013 29013 3.0 90.0 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT PDB ENTRY 1L63 TNT TNT 215.387 0.85 1.57 22.83 184 1511 7 0 1320 0.012 2.546 20.670 1.570 22.820 1PQI 29013 0.000 0.049 0.049 1 7.0000 4.500 90.0 0.204 1.57 1.64 3.500 0.204 3.20 90.7 data reduction MOSFLM data scaling SCALA refinement TNT data scaling CCP4 (SCALA) phasing TNT T4 LYSOZYME CORE REPACKING MUTANT I118L/CORE7/TA 1 N N 2 N N 3 N N 3 N N 4 N N 5 N N A ASN 2 A ASN 2 HELX_P A GLY 12 A GLY 12 1 1 11 A SER 38 A SER 38 HELX_P A GLY 51 A GLY 51 1 2 14 A THR 59 A THR 59 HELX_P A LEU 79 A LEU 79 1 3 21 A LEU 84 A LEU 84 HELX_P A LEU 91 A LEU 91 1 4 8 A ASP 92 A ASP 92 HELX_P A GLY 113 A GLY 113 1 5 22 A PHE 114 A PHE 114 HELX_P A LYS 124 A LYS 124 1 6 11 A ARG 125 A ARG 125 HELX_P A ALA 134 A ALA 134 1 7 10 A SER 136 A SER 136 HELX_P A THR 142 A THR 142 1 8 7 A THR 142 A THR 142 HELX_P A GLY 156 A GLY 156 1 9 15 A TRP 158 A TRP 158 HELX_P A LYS 162 A LYS 162 5 10 5 metalc 2.983 A GLU 11 A OE2 GLU 11 1_555 A K 972 B K K 1_555 metalc 2.988 A GLU 11 A O GLU 11 1_555 A K 972 B K K 1_555 metalc 3.412 A ARG 14 A NH2 ARG 14 1_555 A K 972 B K K 1_555 metalc 2.985 A TYR 18 A OH TYR 18 1_555 A K 972 B K K 1_555 metalc 3.079 A HOH 204 F O HOH 1_555 A K 972 B K K 1_555 metalc 2.994 A HOH 304 F O HOH 1_555 A K 972 B K K 1_555 metalc 3.589 A HOH 510 F O HOH 1_555 A K 972 B K K 1_555 HYDROLASE HYDROLASE (O-GLYCOSYL), T4 LYSOZYME, DESIGNED CORE MUTANT, AUTOMATED PROTEIN DESIGN, PROTEIN ENGINEERING, PROTEIN FOLDING, PROTEIN STABILITY, CORE REPACKING, BACK REVERTANT, DEAD-END ELIMINATION THEOREM, SIDE-CHAIN PACKING, OPTIMIZED ROTAMER COMBINATIONS, ORBIT, HYDROLASE LYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL 1 164 1PQI 1 164 P00720 A 1 1 164 1 CYS engineered mutation THR 54 1PQI A P00720 UNP 54 54 1 ILE engineered mutation VAL 78 1PQI A P00720 UNP 78 78 1 VAL engineered mutation MET 87 1PQI A P00720 UNP 87 87 1 CYS engineered mutation ALA 97 1PQI A P00720 UNP 97 97 1 MET engineered mutation TYR 120 1PQI A P00720 UNP 120 120 1 LEU engineered mutation PHE 133 1PQI A P00720 UNP 133 133 1 VAL engineered mutation ILE 149 1PQI A P00720 UNP 149 149 1 THR engineered mutation VAL 152 1PQI A P00720 UNP 152 152 3 anti-parallel anti-parallel A ARG 14 A ARG 14 A LYS 19 A LYS 19 A TYR 25 A TYR 25 A GLY 28 A GLY 28 A HIS 31 A HIS 31 A THR 34 A THR 34 BINDING SITE FOR RESIDUE K A 972 A K 972 Software 6 BINDING SITE FOR RESIDUE CL A 973 A CL 973 Software 4 BINDING SITE FOR RESIDUE CL A 978 A CL 978 Software 3 BINDING SITE FOR RESIDUE BME A 966 A BME 966 Software 4 A GLU 11 A GLU 11 6 1_555 A ARG 14 A ARG 14 6 1_555 A TYR 18 A TYR 18 6 1_555 A HOH 204 F HOH 6 1_555 A HOH 207 F HOH 6 1_555 A HOH 304 F HOH 6 1_555 A THR 142 A THR 142 4 1_555 A ASN 144 A ASN 144 4 1_555 A ARG 145 A ARG 145 4 1_555 A HOH 209 F HOH 4 1_555 A HIS 31 A HIS 31 3 1_555 A HOH 215 F HOH 3 1_555 A HOH 220 F HOH 3 3_665 A ILE 3 A ILE 3 4 5_555 A ASN 68 A ASN 68 4 1_555 A ALA 93 A ALA 93 4 5_555 A HOH 195 F HOH 4 5_555 154 P 32 2 1