0.016737
0.009663
0.000000
0.000000
0.019326
0.000000
0.000000
0.000000
0.010487
0.00000
0.00000
0.00000
Mooers, B.H.
Datta, D.
Baase, W.A.
Zollars, E.S.
Mayo, S.L.
Matthews, B.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
59.748
59.748
95.360
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C4 H10 O2 S2
154.251
2-HYDROXYETHYL DISULFIDE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
S
N
142
N
S
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
Y
161
N
C
Y
162
N
N
Y
163
N
C
Y
164
N
C
Y
165
N
N
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
S
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
K
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
N
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
S
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
P
N
294
N
O
N
295
N
O
N
296
N
O
N
297
N
O
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
O
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
R
C
N
334
N
O
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
N
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
C
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
Y
159
N
doub
N
160
N
sing
Y
161
N
sing
N
162
N
sing
Y
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
doub
Y
266
N
sing
Y
267
N
sing
N
268
N
sing
Y
269
N
doub
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
332
741
756
10.1016/S0022-2836(03)00856-8
12963380
Repacking the Core of T4 Lysozyme by Automated Design
2003
10.2210/pdb1pqm/pdb
pdb_00001pqm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRRORS
IMAGE PLATE
2000-08-22
RIGAKU RAXIS IV
YALE MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
18640.418
Lysozyme
3.2.1.17
C54T/C97A/V149I/T152V
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
39.098
POTASSIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
154.251
2-HYDROXYETHYL DISULFIDE
1
syn
non-polymer
18.015
water
228
nat
water
Lysis protein, Muramidase, Endolysin
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRIITVFRTGTWDA
YKNL
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRIITVFRTGTWDA
YKNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
Escherichia
sample
E
10665
Enterobacteria phage T4
562
Escherichia coli
RR1
PLASMID
PHS1403
1
2.64
53.33
6.70
Potassium phosphate, sodium PHOSPHATE, NaCl, BME, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 6.70
277
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2003-10-07
1
1
2008-04-29
1
2
2011-07-13
1
3
2021-10-27
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
T4 Lysozyme Core Repacking Mutant V87I/TA
Repacking of the Core of T4 Lysozyme by Automated Design
Repacking of the Core of T4 Lysozyme by Automated Design
T4 LYSOZYME CORE REPACKING BACK-REVERTANT L102M/CORE10
CORE REDESIGN BACK-REVERTANT I103V/CORE10
T4 LYSOZYME CORE REPACKING MUTANT L133F/TA
T4 LYSOZYME CORE REPACKING MUTANT M120Y/TA
T4 LYSOZYME CORE REPACKING MUTANT V103I/TA
T4 LYSOZYME CORE REPACKING MUTANT CORE10/TA
Repacking the Core of T4 Lysozyme by Automated Design
Repacking of the Core of T4 Lysozyme by Automated Design
Repacking of the Core of T4 Lysozyme by Automated Design
T4 Lysozyme Core Repacking Mutant L118I/TA
RCSB
Y
RCSB
2003-06-18
REL
REL
PO4
PHOSPHATE ION
K
POTASSIUM ION
CL
CHLORIDE ION
HED
2-HYDROXYETHYL DISULFIDE
HOH
water
1L63
PDB ENTRY 1L63
PDB
experimental model
PO4
168
2
PO4
PO4
168
A
K
972
3
K
K
972
A
CL
973
4
CL
CL
973
A
CL
978
4
CL
CL
978
A
HED
966
5
HED
HED
966
A
HOH
171
6
HOH
HOH
171
A
HOH
172
6
HOH
HOH
172
A
HOH
174
6
HOH
HOH
174
A
HOH
175
6
HOH
HOH
175
A
HOH
177
6
HOH
HOH
177
A
HOH
179
6
HOH
HOH
179
A
HOH
180
6
HOH
HOH
180
A
HOH
181
6
HOH
HOH
181
A
HOH
182
6
HOH
HOH
182
A
HOH
183
6
HOH
HOH
183
A
HOH
184
6
HOH
HOH
184
A
HOH
185
6
HOH
HOH
185
A
HOH
186
6
HOH
HOH
186
A
HOH
187
6
HOH
HOH
187
A
HOH
188
6
HOH
HOH
188
A
HOH
189
6
HOH
HOH
189
A
HOH
190
6
HOH
HOH
190
A
HOH
191
6
HOH
HOH
191
A
HOH
192
6
HOH
HOH
192
A
HOH
193
6
HOH
HOH
193
A
HOH
194
6
HOH
HOH
194
A
HOH
195
6
HOH
HOH
195
A
HOH
196
6
HOH
HOH
196
A
HOH
197
6
HOH
HOH
197
A
HOH
200
6
HOH
HOH
200
A
HOH
202
6
HOH
HOH
202
A
HOH
204
6
HOH
HOH
204
A
HOH
206
6
HOH
HOH
206
A
HOH
207
6
HOH
HOH
207
A
HOH
208
6
HOH
HOH
208
A
HOH
209
6
HOH
HOH
209
A
HOH
211
6
HOH
HOH
211
A
HOH
213
6
HOH
HOH
213
A
HOH
214
6
HOH
HOH
214
A
HOH
215
6
HOH
HOH
215
A
HOH
216
6
HOH
HOH
216
A
HOH
217
6
HOH
HOH
217
A
HOH
218
6
HOH
HOH
218
A
HOH
219
6
HOH
HOH
219
A
HOH
220
6
HOH
HOH
220
A
HOH
221
6
HOH
HOH
221
A
HOH
222
6
HOH
HOH
222
A
HOH
223
6
HOH
HOH
223
A
HOH
224
6
HOH
HOH
224
A
HOH
225
6
HOH
HOH
225
A
HOH
226
6
HOH
HOH
226
A
HOH
227
6
HOH
HOH
227
A
HOH
228
6
HOH
HOH
228
A
HOH
230
6
HOH
HOH
230
A
HOH
231
6
HOH
HOH
231
A
HOH
232
6
HOH
HOH
232
A
HOH
233
6
HOH
HOH
233
A
HOH
234
6
HOH
HOH
234
A
HOH
236
6
HOH
HOH
236
A
HOH
237
6
HOH
HOH
237
A
HOH
238
6
HOH
HOH
238
A
HOH
239
6
HOH
HOH
239
A
HOH
240
6
HOH
HOH
240
A
HOH
242
6
HOH
HOH
242
A
HOH
244
6
HOH
HOH
244
A
HOH
245
6
HOH
HOH
245
A
HOH
246
6
HOH
HOH
246
A
HOH
247
6
HOH
HOH
247
A
HOH
248
6
HOH
HOH
248
A
HOH
249
6
HOH
HOH
249
A
HOH
250
6
HOH
HOH
250
A
HOH
251
6
HOH
HOH
251
A
HOH
253
6
HOH
HOH
253
A
HOH
254
6
HOH
HOH
254
A
HOH
256
6
HOH
HOH
256
A
HOH
257
6
HOH
HOH
257
A
HOH
258
6
HOH
HOH
258
A
HOH
259
6
HOH
HOH
259
A
HOH
260
6
HOH
HOH
260
A
HOH
261
6
HOH
HOH
261
A
HOH
262
6
HOH
HOH
262
A
HOH
266
6
HOH
HOH
266
A
HOH
269
6
HOH
HOH
269
A
HOH
270
6
HOH
HOH
270
A
HOH
272
6
HOH
HOH
272
A
HOH
273
6
HOH
HOH
273
A
HOH
274
6
HOH
HOH
274
A
HOH
276
6
HOH
HOH
276
A
HOH
278
6
HOH
HOH
278
A
HOH
279
6
HOH
HOH
279
A
HOH
281
6
HOH
HOH
281
A
HOH
282
6
HOH
HOH
282
A
HOH
283
6
HOH
HOH
283
A
HOH
284
6
HOH
HOH
284
A
HOH
285
6
HOH
HOH
285
A
HOH
286
6
HOH
HOH
286
A
HOH
288
6
HOH
HOH
288
A
HOH
291
6
HOH
HOH
291
A
HOH
292
6
HOH
HOH
292
A
HOH
294
6
HOH
HOH
294
A
HOH
295
6
HOH
HOH
295
A
HOH
296
6
HOH
HOH
296
A
HOH
297
6
HOH
HOH
297
A
HOH
299
6
HOH
HOH
299
A
HOH
301
6
HOH
HOH
301
A
HOH
302
6
HOH
HOH
302
A
HOH
304
6
HOH
HOH
304
A
HOH
306
6
HOH
HOH
306
A
HOH
308
6
HOH
HOH
308
A
HOH
312
6
HOH
HOH
312
A
HOH
313
6
HOH
HOH
313
A
HOH
314
6
HOH
HOH
314
A
HOH
315
6
HOH
HOH
315
A
HOH
317
6
HOH
HOH
317
A
HOH
319
6
HOH
HOH
319
A
HOH
320
6
HOH
HOH
320
A
HOH
322
6
HOH
HOH
322
A
HOH
401
6
HOH
HOH
401
A
HOH
402
6
HOH
HOH
402
A
HOH
403
6
HOH
HOH
403
A
HOH
404
6
HOH
HOH
404
A
HOH
405
6
HOH
HOH
405
A
HOH
406
6
HOH
HOH
406
A
HOH
407
6
HOH
HOH
407
A
HOH
408
6
HOH
HOH
408
A
HOH
409
6
HOH
HOH
409
A
HOH
410
6
HOH
HOH
410
A
HOH
411
6
HOH
HOH
411
A
HOH
412
6
HOH
HOH
412
A
HOH
413
6
HOH
HOH
413
A
HOH
414
6
HOH
HOH
414
A
HOH
415
6
HOH
HOH
415
A
HOH
416
6
HOH
HOH
416
A
HOH
417
6
HOH
HOH
417
A
HOH
418
6
HOH
HOH
418
A
HOH
419
6
HOH
HOH
419
A
HOH
420
6
HOH
HOH
420
A
HOH
422
6
HOH
HOH
422
A
HOH
424
6
HOH
HOH
424
A
HOH
425
6
HOH
HOH
425
A
HOH
427
6
HOH
HOH
427
A
HOH
428
6
HOH
HOH
428
A
HOH
429
6
HOH
HOH
429
A
HOH
430
6
HOH
HOH
430
A
HOH
431
6
HOH
HOH
431
A
HOH
432
6
HOH
HOH
432
A
HOH
433
6
HOH
HOH
433
A
HOH
435
6
HOH
HOH
435
A
HOH
436
6
HOH
HOH
436
A
HOH
437
6
HOH
HOH
437
A
HOH
438
6
HOH
HOH
438
A
HOH
439
6
HOH
HOH
439
A
HOH
442
6
HOH
HOH
442
A
HOH
443
6
HOH
HOH
443
A
HOH
444
6
HOH
HOH
444
A
HOH
445
6
HOH
HOH
445
A
HOH
446
6
HOH
HOH
446
A
HOH
448
6
HOH
HOH
448
A
HOH
449
6
HOH
HOH
449
A
HOH
450
6
HOH
HOH
450
A
HOH
451
6
HOH
HOH
451
A
HOH
453
6
HOH
HOH
453
A
HOH
454
6
HOH
HOH
454
A
HOH
456
6
HOH
HOH
456
A
HOH
457
6
HOH
HOH
457
A
HOH
458
6
HOH
HOH
458
A
HOH
459
6
HOH
HOH
459
A
HOH
461
6
HOH
HOH
461
A
HOH
462
6
HOH
HOH
462
A
HOH
464
6
HOH
HOH
464
A
HOH
466
6
HOH
HOH
466
A
HOH
468
6
HOH
HOH
468
A
HOH
471
6
HOH
HOH
471
A
HOH
473
6
HOH
HOH
473
A
HOH
474
6
HOH
HOH
474
A
HOH
475
6
HOH
HOH
475
A
HOH
476
6
HOH
HOH
476
A
HOH
477
6
HOH
HOH
477
A
HOH
480
6
HOH
HOH
480
A
HOH
491
6
HOH
HOH
491
A
HOH
493
6
HOH
HOH
493
A
HOH
494
6
HOH
HOH
494
A
HOH
495
6
HOH
HOH
495
A
HOH
496
6
HOH
HOH
496
A
HOH
497
6
HOH
HOH
497
A
HOH
498
6
HOH
HOH
498
A
HOH
499
6
HOH
HOH
499
A
HOH
500
6
HOH
HOH
500
A
HOH
501
6
HOH
HOH
501
A
HOH
503
6
HOH
HOH
503
A
HOH
504
6
HOH
HOH
504
A
HOH
505
6
HOH
HOH
505
A
HOH
506
6
HOH
HOH
506
A
HOH
507
6
HOH
HOH
507
A
HOH
508
6
HOH
HOH
508
A
HOH
509
6
HOH
HOH
509
A
HOH
510
6
HOH
HOH
510
A
HOH
511
6
HOH
HOH
511
A
HOH
512
6
HOH
HOH
512
A
HOH
513
6
HOH
HOH
513
A
HOH
514
6
HOH
HOH
514
A
HOH
515
6
HOH
HOH
515
A
HOH
516
6
HOH
HOH
516
A
HOH
517
6
HOH
HOH
517
A
HOH
518
6
HOH
HOH
518
A
HOH
519
6
HOH
HOH
519
A
HOH
520
6
HOH
HOH
520
A
HOH
521
6
HOH
HOH
521
A
HOH
522
6
HOH
HOH
522
A
HOH
523
6
HOH
HOH
523
A
HOH
524
6
HOH
HOH
524
A
HOH
526
6
HOH
HOH
526
A
HOH
527
6
HOH
HOH
527
A
HOH
528
6
HOH
HOH
528
A
HOH
529
6
HOH
HOH
529
A
HOH
531
6
HOH
HOH
531
A
HOH
532
6
HOH
HOH
532
A
HOH
534
6
HOH
HOH
534
A
HOH
535
6
HOH
HOH
535
A
HOH
536
6
HOH
HOH
536
A
HOH
539
6
HOH
HOH
539
A
HOH
540
6
HOH
HOH
540
A
HOH
541
6
HOH
HOH
541
A
HOH
542
6
HOH
HOH
542
A
HOH
544
6
HOH
HOH
544
A
HOH
545
6
HOH
HOH
545
A
HOH
547
6
HOH
HOH
547
A
HOH
548
6
HOH
HOH
548
A
HOH
549
6
HOH
HOH
549
A
HOH
550
6
HOH
HOH
550
A
HOH
551
6
HOH
HOH
551
A
HOH
563
6
HOH
HOH
563
A
HOH
564
6
HOH
HOH
564
A
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
THR
54
n
54
THR
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
ILE
100
n
100
ILE
100
A
ASN
101
n
101
ASN
101
A
MET
102
n
102
MET
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
MET
106
n
106
MET
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
VAL
111
n
111
VAL
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
MET
120
n
120
MET
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
ASP
127
n
127
ASP
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
ILE
149
n
149
ILE
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
VAL
152
n
152
VAL
152
A
PHE
153
n
153
PHE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
LYS
162
n
162
LYS
162
A
ASN
163
n
163
ASN
163
A
LEU
164
n
164
LEU
164
A
0.179
0.177
0.219
1449
5
author_defined_assembly
1
monomeric
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
GLU
11
A
O
GLU
11
1_555
88.0
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
TYR
18
A
OH
TYR
18
1_555
116.4
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
TYR
18
A
OH
TYR
18
1_555
89.0
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
204
G
O
HOH
1_555
59.9
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
204
G
O
HOH
1_555
143.7
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
204
G
O
HOH
1_555
90.8
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
207
G
O
HOH
1_555
80.3
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
207
G
O
HOH
1_555
76.7
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
207
G
O
HOH
1_555
158.0
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
207
G
O
HOH
1_555
110.6
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
114.6
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
110.8
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
125.6
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
98.7
A
HOH
207
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
48.5
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
405
G
O
HOH
1_555
49.6
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
405
G
O
HOH
1_555
108.2
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
405
G
O
HOH
1_555
155.6
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
405
G
O
HOH
1_555
65.1
A
HOH
207
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
405
G
O
HOH
1_555
46.3
A
HOH
304
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
405
G
O
HOH
1_555
65.1
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
523
G
O
HOH
1_555
145.7
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
523
G
O
HOH
1_555
59.1
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
523
G
O
HOH
1_555
75.5
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
523
G
O
HOH
1_555
154.4
A
HOH
207
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
523
G
O
HOH
1_555
82.7
A
HOH
304
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
523
G
O
HOH
1_555
73.4
A
HOH
405
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
523
G
O
HOH
1_555
127.9
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
539
G
O
HOH
1_555
77.9
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
539
G
O
HOH
1_555
145.6
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
539
G
O
HOH
1_555
125.4
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
539
G
O
HOH
1_555
48.9
A
HOH
207
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
539
G
O
HOH
1_555
70.1
A
HOH
304
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
539
G
O
HOH
1_555
51.1
A
HOH
405
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
539
G
O
HOH
1_555
40.1
A
HOH
523
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
539
G
O
HOH
1_555
123.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
18
A
N
TYR
18
A
O
THR
26
A
O
THR
26
A
N
ILE
27
A
N
ILE
27
A
O
HIS
31
A
O
HIS
31
1
3.20
0.50
120.30
123.50
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
8
8
8
N
1
5.85
0.90
118.30
124.15
A
A
A
CB
CG
OD1
ASP
ASP
ASP
10
10
10
N
1
-4.47
0.60
121.00
116.53
A
A
A
CB
CG
CD2
TYR
TYR
TYR
24
24
24
N
1
7.14
0.90
118.30
125.44
A
A
A
CB
CG
OD1
ASP
ASP
ASP
47
47
47
N
1
-8.67
0.90
118.30
109.63
A
A
A
CB
CG
OD2
ASP
ASP
ASP
47
47
47
N
1
5.57
0.90
118.30
123.87
A
A
A
CB
CG
OD1
ASP
ASP
ASP
70
70
70
N
1
-5.72
0.90
118.30
112.58
A
A
A
CB
CG
OD2
ASP
ASP
ASP
70
70
70
N
1
-4.43
0.50
120.30
115.87
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
76
76
76
A
A
A
N
1
4.33
0.50
120.30
124.63
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
76
76
76
A
A
A
N
1
7.59
0.90
118.30
125.89
A
A
A
CB
CG
OD1
ASP
ASP
ASP
89
89
89
N
1
7.68
0.90
118.30
125.98
A
A
A
CB
CG
OD1
ASP
ASP
ASP
92
92
92
N
1
-8.14
0.90
118.30
110.16
A
A
A
CB
CG
OD2
ASP
ASP
ASP
92
92
92
N
1
-3.24
0.50
120.30
117.06
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
96
96
96
N
1
8.25
0.50
120.30
128.55
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
119
119
119
N
1
-6.98
0.50
120.30
113.32
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
119
119
119
N
1
6.95
0.90
118.30
125.25
A
A
A
CB
CG
OD1
ASP
ASP
ASP
127
127
127
N
1
-5.65
0.90
118.30
112.65
A
A
A
CB
CG
OD2
ASP
ASP
ASP
127
127
127
N
1
7.14
0.50
120.30
127.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
154
154
154
N
1
-5.49
0.50
120.30
114.81
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
154
154
154
N
1
A
ILE
29
-100.33
72.92
1
A
PHE
114
-89.02
45.87
1
A
ASN
163
79.35
30.61
0.219
0.177
0.179
0.179
1.52
28.50
1449
28880
28880
5
88
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
PDB ENTRY 1L63
TNT
TNT
333
0.9345
1.52
28.50
233
1578
16
0
1329
0.014
1361
0.680
2.475
1829
0.750
0
15.242
1.470
29.881
1PQM
31288
0.000
0.058
0.058
1
6.9000
4.400
91.7
0.096
1.45
1.55
6.900
0.096
1.70
62.7
data reduction
MOSFLM
data scaling
SCALA
refinement
TNT
data scaling
CCP4
(SCALA)
phasing
TNT
T4 Lysozyme Core Repacking Mutant V149I/T152V/TA
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
A
ASN
2
A
ASN
2
HELX_P
A
GLY
12
A
GLY
12
1
1
11
A
SER
38
A
SER
38
HELX_P
A
GLY
51
A
GLY
51
1
2
14
A
THR
59
A
THR
59
HELX_P
A
ASN
81
A
ASN
81
1
3
23
A
LYS
83
A
LYS
83
HELX_P
A
LEU
91
A
LEU
91
1
4
9
A
ASP
92
A
ASP
92
HELX_P
A
GLY
113
A
GLY
113
1
5
22
A
PHE
114
A
PHE
114
HELX_P
A
GLN
123
A
GLN
123
1
6
10
A
ARG
125
A
ARG
125
HELX_P
A
ALA
134
A
ALA
134
1
7
10
A
SER
136
A
SER
136
HELX_P
A
THR
142
A
THR
142
1
8
7
A
THR
142
A
THR
142
HELX_P
A
GLY
156
A
GLY
156
1
9
15
A
TRP
158
A
TRP
158
HELX_P
A
LYS
162
A
LYS
162
5
10
5
metalc
2.958
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
metalc
2.943
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
metalc
2.955
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
metalc
2.965
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
metalc
3.647
A
HOH
207
G
O
HOH
1_555
A
K
972
C
K
K
1_555
metalc
2.981
A
HOH
304
G
O
HOH
1_555
A
K
972
C
K
K
1_555
metalc
3.306
A
HOH
405
G
O
HOH
1_555
A
K
972
C
K
K
1_555
metalc
3.509
A
HOH
523
G
O
HOH
1_555
A
K
972
C
K
K
1_555
metalc
3.646
A
HOH
539
G
O
HOH
1_555
A
K
972
C
K
K
1_555
HYDROLASE
HYDROLASE (O-GLYCOSYL), T4 LYSOZYME, DESIGNED CORE MUTANT, AUTOMATED PROTEIN DESIGN, PROTEIN ENGINEERING, PROTEIN FOLDING, PROTEIN STABILITY, CORE REPACKING, BACK REVERTANT, DEAD-END ELIMINATION THEOREM, SIDE-CHAIN PACKING, OPTIMIZED ROTAMER COMBINATIONS, ORBIT, HYDROLASE
LYS_BPT4
UNP
1
1
P00720
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
1
164
1PQM
1
164
P00720
A
1
1
164
1
CYS
engineered mutation
THR
54
1PQM
A
P00720
UNP
54
54
1
CYS
engineered mutation
ALA
97
1PQM
A
P00720
UNP
97
97
1
VAL
engineered mutation
ILE
149
1PQM
A
P00720
UNP
149
149
1
THR
engineered mutation
VAL
152
1PQM
A
P00720
UNP
152
152
3
anti-parallel
anti-parallel
A
ARG
14
A
ARG
14
A
LYS
19
A
LYS
19
A
TYR
25
A
TYR
25
A
GLY
28
A
GLY
28
A
HIS
31
A
HIS
31
A
LEU
32
A
LEU
32
BINDING SITE FOR RESIDUE PO4 A 168
A
PO4
168
Software
10
BINDING SITE FOR RESIDUE K A 972
A
K
972
Software
4
BINDING SITE FOR RESIDUE CL A 973
A
CL
973
Software
5
BINDING SITE FOR RESIDUE CL A 978
A
CL
978
Software
3
BINDING SITE FOR RESIDUE HED A 966
A
HED
966
Software
7
A
ARG
14
A
ARG
14
10
4_545
A
TYR
18
A
TYR
18
10
4_545
A
LYS
19
A
LYS
19
10
4_545
A
ARG
125
A
ARG
125
10
1_555
A
TRP
126
A
TRP
126
10
1_555
A
ASP
127
A
ASP
127
10
1_555
A
GLU
128
A
GLU
128
10
1_555
A
HOH
192
G
HOH
10
1_555
A
HOH
247
G
HOH
10
1_555
A
HOH
468
G
HOH
10
1_555
A
GLU
11
A
GLU
11
4
1_555
A
TYR
18
A
TYR
18
4
1_555
A
HOH
204
G
HOH
4
1_555
A
HOH
304
G
HOH
4
1_555
A
THR
142
A
THR
142
5
1_555
A
ASN
144
A
ASN
144
5
1_555
A
ARG
145
A
ARG
145
5
1_555
A
HOH
209
G
HOH
5
1_555
A
HOH
291
G
HOH
5
1_555
A
HOH
182
G
HOH
3
1_555
A
HOH
215
G
HOH
3
1_555
A
HOH
220
G
HOH
3
3_665
A
ILE
3
A
ILE
3
7
5_555
A
PHE
4
A
PHE
4
7
1_555
A
ASN
68
A
ASN
68
7
1_555
A
VAL
71
A
VAL
71
7
1_555
A
ASP
72
A
ASP
72
7
1_555
A
VAL
75
A
VAL
75
7
1_555
A
ALA
93
A
ALA
93
7
5_555
154
P 32 2 1